BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020880
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YDX|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|B Chain B, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|C Chain C, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|D Chain D, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
pdb|2YDX|E Chain E, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit
Length = 315
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 154/313 (49%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 3 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 48
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 49 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 105
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 106 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 163
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 164 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 222
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ +MA +A+ +S ++P++ S V G Q P + +D +KL +TL I
Sbjct: 223 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPV-LGAQRPRNAQLDCSKL-ETLGIG 280
Query: 304 PVT-YKDGVKLTL 315
T ++ G+K +L
Sbjct: 281 QRTPFRIGIKESL 293
>pdb|2YDY|A Chain A, Crystal Structure Of Human S-Adenosylmethionine Synthetase
2, Beta Subunit In Orthorhombic Crystal Form
Length = 315
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 151/313 (48%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 3 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 48
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 49 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 105
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 106 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 163
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + D ++
Sbjct: 164 EKLEESAVTVXFDKVQFSNKSANXDHWQQRFPTHVKDVATVCRQLAEK-RXLDPSIKGTF 222
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G ++ ++ + A +A+ +S ++P++ S V G Q P + +D +KL +TL I
Sbjct: 223 HWSGNEQXTKYEXACAIADAFNLPSSHLRPITDSPV-LGAQRPRNAQLDCSKL-ETLGIG 280
Query: 304 PVT-YKDGVKLTL 315
T ++ G+K +L
Sbjct: 281 QRTPFRIGIKESL 293
>pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
pdb|2GGS|B Chain B, Crystal Structure Of Hypothetical Dtdp-4-Dehydrorhamnose
Reductase From Sulfolobus Tokodaii
Length = 273
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 141/306 (46%), Gaps = 46/306 (15%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R L+ G +G LG L + LSE ++V ++S+ + + +DL
Sbjct: 2 RTLITGASGQLGIELSRLLSE----RHEVIKVYNSSEIQG-----------GYKLDLTDF 46
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ +K +PDV++N AA++ CE + + A IN + V + + ++ ++
Sbjct: 47 PRLEDFIIK-KRPDVIINAAAMTDVDKCEIEKEKAYKINAEA--VRHIVRAGKVIDSYIV 103
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTIS 184
H+STD V++G K YKEED P+N YG SK+ E F + S I+R+S I+
Sbjct: 104 HISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQDDS--LIIRTSGIFR----- 156
Query: 185 PVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLN 244
K PI ++ L +G+ V F P+ R + IL L + + +++
Sbjct: 157 --NKGFPI-YVYKTLKEGKTV-FAFKGYYSPISARKLASAILELL------ELRKTGIIH 206
Query: 245 VGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVD--RG--VQSPADISMDITKLVQTL 300
V G +R+SR ++A + E P VD RG + P D S+D ++ + L
Sbjct: 207 VAG-ERISRFELALKIKE------KFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKIL 259
Query: 301 NIDPVT 306
+ D T
Sbjct: 260 STDFYT 265
>pdb|1KBZ|A Chain A, Crystal Structure Of Apo-dtdp-6-deoxy-l-lyxo-4-hexulose
Reductase (rmld) From Salmonella Enterica Serovar
Typhimurium
pdb|1KC1|A Chain A, Crystal Structure Of Dtdp-6-deoxy-l-lyxo-4-hexulose
Reductase (rmld) In Complex With Nadph
pdb|1KC3|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadph And
Dtdp-L-Rhamnose
pdb|1N2S|A Chain A, Crystal Structure Of Dtdp-6-Deoxy-L-Lyxo-4-Hexulose
Reductase (Rmld) In Complex With Nadh
Length = 299
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL-LDALPHSFVFFDVDLKSG 64
+L+ G TG +G L + L+ P+ L+ LD HS F D +
Sbjct: 3 ILLFGKTGQVGWELQRSLA----------------PVGNLIALDV--HSKEFCG-DFSNP 43
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
G K +PDV+VN AA + E++P+ A +N S V ++ ++
Sbjct: 44 KGVAETVRKL-RPDVIVNAAAHTAVDKAESEPELAQLLNATS--VEAIAKAANETGAWVV 100
Query: 125 HLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
H STD V+ G ++E D +P+NVYGK+K+A EK + + C I R+S +Y
Sbjct: 101 HYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVY 155
>pdb|3SC6|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|D Chain D, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|E Chain E, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
pdb|3SC6|F Chain F, 2.65 Angstrom Resolution Crystal Structure Of
Dtdp-4-Dehydrorhamnose Reductase (Rfbd) From Bacillus
Anthracis Str. Ames In Complex With Nadp
Length = 287
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 33/228 (14%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
K+RV++ G G LG+ L + E+ + YD+ P + LLD +
Sbjct: 5 KERVIITGANGQLGKQLQE---ELNPEEYDI------YPFDKKLLD------------IT 43
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSIN-VPSSLVNWLSSFTENKEN 121
+ S V + +P ++++CAA + E + D A IN + + V S K
Sbjct: 44 NISQVQQVVQEI-RPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAK-- 100
Query: 122 LLIHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
L+++STD V++G + Y E AP+N+YG SK A E+F+ E + + I+R+S +YG
Sbjct: 101 -LVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHNKYFIVRTSWLYGK 159
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
+ V + + + E++ D+ P YV D+ +I L
Sbjct: 160 YGNNFVKTMIRLG------KEREEISVVADQIGSPTYVADLNVMINKL 201
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 20/159 (12%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKENLLIHLSTDQVYE 133
+P+VV+NCAA + CE D A IN P +L ++++ E ++ +STD V++
Sbjct: 63 KPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLA--AAAYSVGAE--IVQISTDYVFD 118
Query: 134 G-VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSLPI 192
G K E DE+ P + YGK+K+ E F+ + I+R++ +YG
Sbjct: 119 GEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWLYGDGN---------- 168
Query: 193 QWIDSVLSKG---EKVEFFHDECRCPVYVRDVVKIILAL 228
++ + ++ G ++++ HD+ P D+ +++L +
Sbjct: 169 NFVKTXINLGKTHDELKVVHDQVGTPTSTVDLARVVLKV 207
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 39/325 (12%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R++V GG G++G HL+ L E+ Y+V + + + ++ V D G
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELG---YEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWG 58
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+G + DVV + AA R+ +P + NV ++ N L + ++
Sbjct: 59 AGI--------KGDVVFHFAANPEVRLSTTEPIVHFNENVVATF-NVLEWARQTGVRTVV 109
Query: 125 HLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAIL--------RSS 175
S+ VY EE+ P++VYG +K A E C+ +A L R +
Sbjct: 110 FASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVM----CATYARLFGVRCLAVRYA 165
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWL 233
+ GP+ + + +I + +E D + + +YVRD V+ LA ++
Sbjct: 166 NVVGPR----LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFE 221
Query: 234 SEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADI---S 290
D L LNVG D V + +A++VAE+ G I+ V ++ RG P D+ +
Sbjct: 222 EMDAPF-LALNVGNVDAVRVLDIAQIVAEVLGLRPE-IRLVPSTPDGRG--WPGDVKYMT 277
Query: 291 MDITKLVQTLNIDP-VTYKDGVKLT 314
+ +TKL++ P +T + VK T
Sbjct: 278 LAVTKLMKLTGWRPTMTSAEAVKKT 302
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 140/326 (42%), Gaps = 45/326 (13%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHST-PLPQLLLDALPHSFVFFDVDLKS 63
R++V GG G++G HL+ L E+ + V T +L + L D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRDLK--------DYSW 53
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
G+G + DVV + AA R+ +P + NV ++ N L + +
Sbjct: 54 GAGI--------KGDVVFHFAANPEVRLSTTEPIVHFNENVVATF-NVLEWARQTGVRTV 104
Query: 124 IHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAIL--------RS 174
+ S+ VY EE+ P++VYG +K A E C+ +A L R
Sbjct: 105 VFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVM----CATYARLFGVRCLAVRY 160
Query: 175 SIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRW 232
+ + GP+ + + +I + +E D + + +YVRD V+ LA ++
Sbjct: 161 ANVVGPR----LRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKF 216
Query: 233 LSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADI--- 289
D L LNVG D V + +A++VAE+ G I+ V ++ RG P D+
Sbjct: 217 EEMDAPF-LALNVGNVDAVRVLDIAQIVAEVLGLRPE-IRLVPSTPDGRG--WPGDVKYM 272
Query: 290 SMDITKLVQTLNIDP-VTYKDGVKLT 314
++ +TKL++ P +T + VK T
Sbjct: 273 TLAVTKLMKLTGWRPTMTSAEAVKKT 298
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 41/332 (12%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKP-YDV----AATHHSTPLPQLLLDALP-HSF 54
M ++LV GG G++G + ++ + +E P ++V + S P L+ P ++F
Sbjct: 1 MHSMKLLVTGGMGFIGSNFIRYI--LEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTF 58
Query: 55 VFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS 114
V DV + ++ V + D VV+ AA S + P+ + NV + S
Sbjct: 59 VKGDV-----ADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESI 113
Query: 115 FTENKENLLIHLSTDQVYEGV-KSFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSNF-- 169
EN E +H+STD+VY + K + E D + P + Y +K A++ + + + N
Sbjct: 114 RRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNA 173
Query: 170 AILRSSIIYGPQTISP--VPKSLPIQWIDSVLSKGEKVEFF--HDECRCPVYVRDVVKII 225
+I R + YGP +PK++ I + L G K+ + R +YV D V+ I
Sbjct: 174 SITRCTNNYGPYQFPEKLIPKTI----IRASL--GLKIPIYGTGKNVRDWLYVEDHVRAI 227
Query: 226 -LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQ 284
L L E ++ + N+ + + +++ +++ + G LI+ V DR
Sbjct: 228 ELVLLK---GESRE---IYNISAGEEKTNLEVVKIILRLMGKGEELIELVE----DRPGH 277
Query: 285 SPADISMDITKLVQTLNIDP-VTYKDGVKLTL 315
S+D K+ + L P T+ +G+K T+
Sbjct: 278 D-LRYSLDSWKITRDLKWRPKYTFDEGIKKTI 308
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 118/276 (42%), Gaps = 24/276 (8%)
Query: 4 KRVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+++L+ GG G++G L++ ++E V ++ L L A F F VD+
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFT 116
+ V + QPD V++ AA S + P + + N+ + + ++ T
Sbjct: 62 DRAELARVFTEH-QPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 117 ENKENLLI--HLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA- 170
E+K++ H+STD+VY + S F+ E AP + Y SK +++ + +
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180
Query: 171 ---ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227
I S YGP K +P+ ++++ K V + R +YV D + +
Sbjct: 181 PTLITNCSNNYGPYHFP--EKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYC 238
Query: 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEI 263
++ ++ N+GG + + + E + E+
Sbjct: 239 -----VATTGKVGETYNIGGHNERKNLDVVETICEL 269
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 129/322 (40%), Gaps = 43/322 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPY---DVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+L+ GG GY+G H ++ L + EG D T H DA+ F++ DL+
Sbjct: 4 ILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHE--------DAITEGAKFYNGDLR 54
Query: 63 SGSGFDAVALKFGQPDV--VVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ V F Q ++ V++ AA S+ V P + NV +L L E K
Sbjct: 55 DKAFLRDV---FTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALC-LLEVMDEFKV 110
Query: 121 NLLIHLSTDQVYEGVK-SFYKEEDEIAPVNVYGKSKVAAEKFI--YEKCSN--FAILRSS 175
+ I ST Y V EE P N YG++K+A EK + Y + SN + I R
Sbjct: 111 DKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
Query: 176 IIYG--PQTI-----SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP--VYVRDVVKIIL 226
+ G P I P +P+ + L + EK+ F D+ P +RD + +
Sbjct: 171 NVAGATPNGIIGEDHRPETHLIPLV-LQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229
Query: 227 ALTNRWLS----EDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRG 282
+ +L ++ N+G + S ++ + V E+ + + A R
Sbjct: 230 LVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHE------IPAEVAPRR 283
Query: 283 VQSPADISMDITKLVQTLNIDP 304
PA + K + L DP
Sbjct: 284 AGDPARLVASSQKAKEKLGWDP 305
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 138/326 (42%), Gaps = 38/326 (11%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
RVLV GG G++G H+++ ++ + +VA + L + +P FF VDL+
Sbjct: 2 RVLVTGGAGFIGSHIVE---DLLARGLEVAVLDN---LATGKRENVPKGVPFFRVDLRDK 55
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
G + +F +P V + AA + +V DP +N+ L + E L+
Sbjct: 56 EGVERAFREF-RPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVF 114
Query: 125 HLSTDQVYEGVKSFYKEEDEIAPV--NVYGKSKVAAEKFIYEKCSNFAI----LRSSIIY 178
+ +Y V + E+ P + Y SK A E ++ ++ + LR +Y
Sbjct: 115 ASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVY 174
Query: 179 GPQTISPVPKSLPIQWIDSVLSKGEKVEFF-----HDE--CRCPVYVRDVVKI-ILALTN 230
GP+ + + + VL KG V + DE R VYV DV + LAL +
Sbjct: 175 GPRQDPHGEAGVVAIFAERVL-KGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFS 233
Query: 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLI-KPVSASSVDRGVQSPADI 289
++ + NVG + + ++ VAE G + + P ++R V SP
Sbjct: 234 --------LEGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSP--- 282
Query: 290 SMDITKLVQTLNIDPVTYKDGVKLTL 315
KL+ V +++G++LT+
Sbjct: 283 ----LKLMAHGWRPKVGFQEGIRLTV 304
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 115/272 (42%), Gaps = 34/272 (12%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
++V GG G++G H++ LSE V + S+ + + +A DL +
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE---SNEIVVIDNLSSGNEEFVNEAAR----LVKADLAA-- 54
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
D + + V + AA R+ +PD NV ++ L + + + ++
Sbjct: 55 --DDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATY-RLLEAMRKAGVSRIVF 111
Query: 126 LSTDQVYEGVKSFYKEEDE-IAPVNVYGKSKVAAEKFIYEKCSNFA----ILRSSIIYGP 180
ST VY K ED P+++YG SK+A E I C F I R + + G
Sbjct: 112 TSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGR 171
Query: 181 QTISPVPKSLPIQWIDS-----VLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSE 235
++ V ++ + +L GE+ + + +Y+ D V +L L
Sbjct: 172 RSTHGVIYDFIMKLKRNPEELEILGNGEQNKSY-------IYISDCVDAMLF----GLRG 220
Query: 236 DKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYS 267
D+++ + N+G D++ ++AE+V E G S
Sbjct: 221 DERVN-IFNIGSEDQIKVKRIAEIVCEELGLS 251
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-------ATHHSTPLPQLLLDALPHSF 54
+ K VLV GG GY+G H + L E YD +T+ S ++L H
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIE---NGYDCVVADNLSNSTYDSVARLEVLTK---HHI 63
Query: 55 VFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS 114
F++VDL G + V ++ + D V++ A L P N+ ++V L
Sbjct: 64 PFYEVDLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVV-LLEL 121
Query: 115 FTENKENLLIHLSTDQVYEGVKSF-----YKEEDEIAPVNVYGKSKVAAEKFIYE----- 164
+ + + S+ VY F EE + P N YG +K A E + +
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 165 -KCSNFAILRSSIIYGPQTISP----------VPKSLPIQWIDSVLSKGEKVEFFHD--E 211
K FAILR + P P +P +L + + EK+ F D +
Sbjct: 182 KKSWKFAILR---YFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYD 238
Query: 212 CRCPVYVRDVVKII 225
R +RD + ++
Sbjct: 239 SRDGTPIRDYIHVV 252
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 135/346 (39%), Gaps = 40/346 (11%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFV-FFDV 59
M K+VL++G G++G HL + + +E ++V T L D + H + FF+
Sbjct: 22 MKAKKVLILGVNGFIGHHLSKRI--LETTDWEVFGMDMQT---DRLGDLVKHERMHFFEG 76
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+ + V + DV++ A++ P P ++ ++L S+ K
Sbjct: 77 DITINK--EWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGK 134
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIA----PVN----VYGKSKVAAEKFIYE---KCSN 168
L+ ST +VY + D A P+N +Y SK ++ I+ + N
Sbjct: 135 H--LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLN 192
Query: 169 FAILRSSIIYGPQTIS-PVPKSLPIQWIDSVLS---KGEKVEFFH--DECRCPVYVRDVV 222
F + R GP S PK + + L +GE + + R YV D +
Sbjct: 193 FTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGI 252
Query: 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ-----MAEVVAEIRGYSTS-----LIK 272
++ + S + N+G P+ V+ M E+ AE Y+ S L++
Sbjct: 253 SALMKIIEN--SNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVE 310
Query: 273 PVSASSVDRGVQSPADISMDITKLVQTLNIDP-VTYKDGVKLTLAA 317
S + G Q + I +Q L P T+ D ++ A
Sbjct: 311 TTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEA 356
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 126/282 (44%), Gaps = 23/282 (8%)
Query: 5 RVLVVGGTGYLGQHLLQ-GLSEIEG-KPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+LV GG G++G + + L E K + A +S L + ++ F +++
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQ 85
Query: 63 SGSGFDAVALKFGQPDVVVNCAALS-VPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+G + V +K V+VN AA S V R EN P NV + V L +
Sbjct: 86 NGELLEHV-IKERDVQVIVNFAAESHVDRSIEN-PIPFYDTNVIGT-VTLLELVKKYPHI 142
Query: 122 LLIHLSTDQVYE--GVKSFYKEEDEIAPVNVYGKSKVAAEK--FIYEKCSNFAIL--RSS 175
L+ +STD+VY G + EE +AP + Y SK +A+ Y K ++ R S
Sbjct: 143 KLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKASADXIALAYYKTYQLPVIVTRCS 202
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNRWL 233
YGP K +P+ +++ +G+K+ + D R ++V D I + ++
Sbjct: 203 NNYGPYQYP--EKLIPLXVTNAL--EGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHK-- 256
Query: 234 SEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVS 275
++ + N+GG + + V++ E + + G + I+ V+
Sbjct: 257 ---GRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVT 295
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 107/246 (43%), Gaps = 39/246 (15%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDAL--PHSFVFFDVD 60
K R+L+ GG G++G HL + L VA+ T L L + + P
Sbjct: 7 KHRILITGGAGFIGGHLARAL---------VASGEEVTVLDDLRVPPMIPPEG------- 50
Query: 61 LKSGSGFDAVALKFGQPDV-----VVNCAA-LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
+G + L+ + D+ V + A+ SVPR + D +++ L+ +S
Sbjct: 51 --TGKFLEKPVLELEERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTS 108
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDE-IAPVNVYGKSKVAAEKFI--YEKCS---N 168
K ++ ST +VY + ED ++P + Y SKV E +++ S
Sbjct: 109 VGVPK---VVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRASVAPE 165
Query: 169 FAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGE-KVEFFHDECRCPVYVRDVVKIILA 227
I+R +YGP P +L + ++L++ E VE ++ R Y+ DVV ++A
Sbjct: 166 VGIVRFFNVYGP---GERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVA 222
Query: 228 LTNRWL 233
L NR L
Sbjct: 223 LANRPL 228
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 70
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 71 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 124
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 185 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 244
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G P+ + ++
Sbjct: 245 LYRIIENAGNRCDGE------IINIGNPENEASIE 273
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 70
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 71 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 124
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 185 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 244
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G P+ + ++
Sbjct: 245 LYRIIENAGNRCDGE------IINIGNPENEASIE 273
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 70
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 71 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 124
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 185 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 244
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G P+ + ++
Sbjct: 245 LYRIIENAGNRCDGE------IINIGNPENEASIE 273
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 70
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 71 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 124
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 185 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 244
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G P+ + ++
Sbjct: 245 LYRIIENAGNRCDGE------IINIGNPENEASIE 273
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 315 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 372
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 373 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 426
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 427 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 487 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 546
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G P+ + ++
Sbjct: 547 LYRIIENAGNRCDGE------IINIGNPENEASIE 575
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 36/275 (13%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + Y+V + L+ FV D+ +
Sbjct: 13 RTRVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIH 70
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L + +
Sbjct: 71 S----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKR 124
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFA 170
+I ST +VY Y +ED + PVN +Y SK ++ I+ ++ F
Sbjct: 125 IIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 184
Query: 171 ILRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD---- 220
+ R GP+ + + S I + L +G ++ + RC +RD
Sbjct: 185 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 244
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+ +II NR E ++N+G P+ + ++
Sbjct: 245 LYRIIENAGNRCDGE------IINIGNPENEASIE 273
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/273 (21%), Positives = 110/273 (40%), Gaps = 36/273 (13%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
RVL++G G++G HL + L + Y+V + L+ FV D+ + S
Sbjct: 2 RVLILGVNGFIGNHLTERL--LREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHS- 58
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + DVV+ A++ P +P ++ +L + + +I
Sbjct: 59 ---EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR--IIRYCVKYRKRII 113
Query: 125 HLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFAIL 172
ST +VY Y +ED + PVN +Y SK ++ I+ ++ F +
Sbjct: 114 FPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLF 173
Query: 173 RSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRD----VV 222
R GP+ + + S I + L +G ++ + RC +RD +
Sbjct: 174 RPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALY 233
Query: 223 KIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ 255
+II NR E ++N+G P+ + ++
Sbjct: 234 RIIENAGNRCDGE------IINIGNPENEASIE 260
>pdb|3PVZ|A Chain A, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|B Chain B, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|C Chain C, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
pdb|3PVZ|D Chain D, Udp-N-Acetylglucosamine 4,6-Dehydratase From Vibrio
Fischeri
Length = 399
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 30/182 (16%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+S+ R LV+GG G +GQ + + + + + V + + L+ + SF + + D
Sbjct: 33 VSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNXVE--LVRDIRSSFGYINGD 90
Query: 61 LKS-----GS-GFDAVALKFGQPDVVVNCAALSVPRVCENDP---DSAMSINVPSSLVNW 111
++ GS +DA GQ D V+N +AL R E DP + +NV
Sbjct: 91 FQTFALDIGSIEYDAFIKADGQYDYVLNLSALKHVR-SEKDPFTLXRXIDVNV------- 142
Query: 112 LSSFTENKENLLIHLSTDQVYEGVKSFY--KEEDEIAPVNVYGKSKVAAEKFIYEKCSNF 169
F +K I S D G K ++ + PVN G SK E F+ K
Sbjct: 143 ---FNTDK---TIQQSIDA---GAKKYFCVSTDKAANPVNXXGASKRIXEXFLXRKSEEI 193
Query: 170 AI 171
AI
Sbjct: 194 AI 195
>pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|B Chain B, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|C Chain C, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|D Chain D, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|E Chain E, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|F Chain F, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|G Chain G, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|H Chain H, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|I Chain I, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
pdb|1EQ2|J Chain J, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6-
Epimerase
Length = 310
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 108/274 (39%), Gaps = 44/274 (16%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSG 64
++V GG G++G ++++ L+ D T L++D L F + VDL
Sbjct: 2 IIVTGGAGFIGSNIVKALN-------DKGIT------DILVVDNLKDGTKFVNLVDLNIA 48
Query: 65 SGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D +FG + + + A S E D M N S L +
Sbjct: 49 DYMDKEDFLIQIMAGEEFGDVEAIFHEGAXS--STTEWDGKYMMDNNYQYS--KELLHYC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKFIY----EKCSNFAI 171
+E ++ S+ Y G S + E E P+NVYG SK ++++ E S
Sbjct: 105 LEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVG 164
Query: 172 LRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFF---HDECRCPVYVRDVVKIILAL 228
R +YGP+ + +++ L+ GE + F + R VYV DV +
Sbjct: 165 FRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADV---- 220
Query: 229 TNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAE 262
N W E+ + + N+G R + + VA+
Sbjct: 221 -NLWFLENG-VSGIFNLG----TGRAESFQAVAD 248
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 63/344 (18%), Positives = 138/344 (40%), Gaps = 47/344 (13%)
Query: 5 RVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
++L+ GG G++G +++ + + ++ ++ L L + + + F D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFTE 117
+ + ++ QPD V++ AA S P + + N+ + + S+ E
Sbjct: 62 SAEITRIFEQY-QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 118 NKEN--LLIHLSTDQVYEGVKS-----------FYKEEDEIAPVNVYGKSKVAAEKFIYE 164
+K+N H+STD+VY + + E AP + Y SK +++ +
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 165 KCSNFA----ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220
+ + S YGP K +P+ ++++ K + D+ R +YV D
Sbjct: 181 WRRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ--------MAEVVAEIRGYSTSLIK 272
+ + + ++E K + N+GG + + + E+V + Y +
Sbjct: 239 HARALHMV----VTEGKAGE-TYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITY 293
Query: 273 PVSASSVDRGVQSPADISMDITKLVQTLNIDPV-TYKDGVKLTL 315
DR ++D K+ + L P+ T++ G++ T+
Sbjct: 294 VADRPGHDR------RYAIDAGKISRELGWKPLETFESGIRKTV 331
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 87 SVPRVCENDPDSA----MSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEE 142
+ P V +N D A M +P + + +FT E+L+ H S F+ +
Sbjct: 111 TYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWHFS----------FFAAD 160
Query: 143 DEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSII 177
D +A + GK + E FI SN + ++
Sbjct: 161 DRLAETLIAGKERFFLEHFIKSHASNTEVFSERLL 195
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 87 SVPRVCENDPDSA----MSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEE 142
+ P V +N D A M +P + + +FT E+L+ H S F+ +
Sbjct: 111 TYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWHFS----------FFAAD 160
Query: 143 DEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSII 177
D +A + GK + E FI SN + ++
Sbjct: 161 DRLAETLIAGKERFFLEHFIKSHASNTEVFSERLL 195
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ + +L+ GGTG G+ ++ + + + + ++ ++ FF D
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGD 78
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
++ + + D+ ++ AAL + E +P + N+ + N +++ +N
Sbjct: 79 VRD---LERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGA-SNVINACLKNAI 134
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNF 169
+ +I LSTD+ P+N+YG +K+ ++K ++ +NF
Sbjct: 135 SQVIALSTDKAAN-------------PINLYGATKLCSDK-LFVSANNF 169
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 108/276 (39%), Gaps = 44/276 (15%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLK 62
+ ++V GG G++G ++++ L+ D T L++D L F + VDL
Sbjct: 47 RMIIVTGGAGFIGSNIVKALN-------DKGIT------DILVVDNLKDGTKFVNLVDLN 93
Query: 63 SGSGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D +FG + + + A S E D M N S L
Sbjct: 94 IADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS--STTEWDGKYMMDNNYQYS--KELLH 149
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEI-APVNVYGKSKVAAEKFIY----EKCSNF 169
+ +E ++ S+ Y G S + E E P+NV+G SK ++++ E S
Sbjct: 150 YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEANSQI 209
Query: 170 AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE---CRCPVYVRDVVKIIL 226
R +YGP+ + +++ L+ GE + F R VYV DV +
Sbjct: 210 VGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADV-- 267
Query: 227 ALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAE 262
N W E+ + + N+G R + + VA+
Sbjct: 268 ---NLWFLENG-VSGIFNLG----TGRAESFQAVAD 295
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 35/218 (16%)
Query: 5 RVLVVGGTGYLGQHLL-----QGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV 59
++L+ GG G+LG +L QG+ I +D + +T L + +F F
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLI---VFDNLSRKGATDNLHWL--SSLGNFEFVHG 57
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
D+++ + + K+ PD + A ++P INV +L N L + +
Sbjct: 58 DIRNKNDVTRLITKY-MPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTL-NLLEAVRQYN 115
Query: 120 ENL-LIHLSTDQVYEGVKSFYKEEDEIAPVNV-----------------YGKSKVAAEKF 161
N +I+ ST++VY ++ + E E V YG SK AA+++
Sbjct: 116 SNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQY 175
Query: 162 IYEKCSNFA----ILRSSIIYGPQTISPVPKSLPIQWI 195
+ + F + R S +YG + + + + W
Sbjct: 176 MLDYARIFGLNTVVFRHSSMYGGRQFATYDQGW-VGWF 212
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 124/316 (39%), Gaps = 39/316 (12%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDV 59
+KR+L+ GG G++G HL L H T + + H +
Sbjct: 27 RKRILITGGAGFVGSHLTDKLX---------XDGHEVTVVDNFFTGRKRNVEHWIGHENF 77
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
+L + D V + + D + + A+ + P +P + N +L N L
Sbjct: 78 ELIN---HDVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTL-NXLGLAKRVG 133
Query: 120 ENLLIHLSTDQVYEGVKSFYKEED------EIAPVNVYGKSKVAAEK--FIYEKCSNFAI 171
LL+ ST +VY + + ED I P Y + K AE + Y K +
Sbjct: 134 ARLLL-ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEV 192
Query: 172 LRSSII--YGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALT 229
+ I +GP+ + + + ++ + V + R YV D+V ++AL
Sbjct: 193 RVARIFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALX 252
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADI 289
N +S +N+G P+ + ++ A+++ + G S S I+ +S + D P
Sbjct: 253 NSNVSSP------VNLGNPEEHTILEFAQLIKNLVG-SGSEIQFLSEAQDD-----PQKR 300
Query: 290 SMDITKLVQTLNIDPV 305
DI K L +PV
Sbjct: 301 KPDIKKAKLXLGWEPV 316
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 128/321 (39%), Gaps = 49/321 (15%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDA---LPHSFVFFDV 59
+KR+L+ GG G++G HL L + H T + + H +
Sbjct: 5 RKRILITGGAGFVGSHLTDKL---------MMDGHEVTVVDNFFTGRKRNVEHWIGHENF 55
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
+L + D V + + D + + A+ + P +P + N +L N L
Sbjct: 56 ELIN---HDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTL-NMLGLAKRVG 111
Query: 120 ENLLIHLSTDQVYEGVKSFYKEED------EIAPVNVYGKSKVAAEKFIY----EKCSNF 169
LL+ ST +VY + + ED I P Y + K AE Y ++
Sbjct: 112 ARLLL-ASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 170
Query: 170 AILRSSIIYGPQ---TISPVPKSLPIQWIDSVLSKGEKVEFF--HDECRCPVYVRDVVKI 224
+ R +GP+ V + +Q + +GE + + + R YV D+V
Sbjct: 171 RVARIFNTFGPRMHMNDGRVVSNFILQAL-----QGEPLTVYGSGSQTRAFQYVSDLVNG 225
Query: 225 ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQ 284
++AL N +S +N+G P+ + ++ A+++ + G S S I+ +S + D +
Sbjct: 226 LVALMNSNVSSP------VNLGNPEEHTILEFAQLIKNLVG-SGSEIQFLSEAQDDPQKR 278
Query: 285 SPADISMDITKLVQTLNIDPV 305
P DI K L +PV
Sbjct: 279 KP-----DIKKAKLMLGWEPV 294
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 147 PVNVYGKSKVAAEKFIYEKCSNFAIL----RSSIIYGP-QTISPVPKSLPIQWIDSVLSK 201
P + YG K+A E+ +F I R IYGP T ++ P + +
Sbjct: 172 PQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREAAPAAFCRKAQTS 231
Query: 202 GEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV 259
++ E + D + R ++ + V+ +L LT E +N+G + VS +MAE+
Sbjct: 232 TDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREP------VNIGSDEMVSMNEMAEM 285
Query: 260 V 260
V
Sbjct: 286 V 286
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 3 KKRVLVVGGTGYLGQHLLQG 22
K ++L+ GGTGY+G H+++G
Sbjct: 7 KSKILIFGGTGYIGNHMVKG 26
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 3 KKRVLVVGGTGYLGQHLLQG 22
K ++L+ GGTGY+G H+++G
Sbjct: 11 KSKILIFGGTGYIGNHMVKG 30
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 3 KKRVLVVGGTGYLGQHLLQG 22
K ++L+ GGTGY+G H+++G
Sbjct: 11 KSKILIFGGTGYIGNHMVKG 30
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 3 KKRVLVVGGTGYLGQHLLQG 22
K ++L+ GGTGY+G H+++G
Sbjct: 11 KSKILIFGGTGYIGNHMVKG 30
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 146 APVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQ-TISPVPKSLPIQWIDSVLSKGEK 204
AP YG SK A E F+ LR + + GP+ I P+P L G+K
Sbjct: 155 APFTSYGISKTAGEAFLMMSDVPVVSLRLANVTGPRLAIGPIPT------FYKRLKAGQK 208
Query: 205 VEFFHDECRCPVYVRDVVKI--ILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAE 262
C C VRD + + LA+ + L E + + NV + S ++ +VV +
Sbjct: 209 -------CFCSDTVRDFLDMSDFLAIADLSLQEGRPTG-VFNVSTGEGHSIKEVFDVVLD 260
Query: 263 IRGYSTSLIKPVSASSVD 280
G + + PV A D
Sbjct: 261 YVGATLAEPVPVVAPGAD 278
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 147 PVNVYGKSKVAAEKFIYEKCSNFAIL----RSSIIYGP-QTISPVPKSLPIQWIDSVLSK 201
P + YG K+A E+ +F I R IYGP T + P + +
Sbjct: 172 PQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTS 231
Query: 202 GEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV 259
++ E + D + R ++ + V+ +L LT E +N+G + VS +MAE+
Sbjct: 232 TDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREP------VNIGSDEMVSMNEMAEM 285
Query: 260 V 260
V
Sbjct: 286 V 286
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 14/95 (14%)
Query: 87 SVPRVCENDPDSA----MSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEE 142
+ P V +N D A M +P + + +FT E+L+ + S F+ +
Sbjct: 111 TYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWYFS----------FFAAD 160
Query: 143 DEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSII 177
D +A + GK + E FI SN + ++
Sbjct: 161 DRLAETLIAGKERFFLEHFIKSHASNTEVFSERLL 195
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEG--KPYDVAATHHSTPLPQLLLDALPHSFVFFDVDL 61
KRV V G TG+ G L L+E+ K Y + A + + L+ L S + D+
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMESHI---GDI 66
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE-NKE 120
+ + +F +P++V + AA + R+ P S NV + V+ L + +
Sbjct: 67 RDFEKLRSSIAEF-KPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGT-VHLLETVKQVGNI 124
Query: 121 NLLIHLSTDQVYEGVKSF--YKEEDEIAPVNVYGKSKVAAE 159
++++++D+ Y+ + Y+E + + + Y SK AE
Sbjct: 125 KAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAE 165
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 147 PVNVYGKSKVAAEKFIYEKCSNFAIL----RSSIIYGP-QTISPVPKSLPIQWIDSVLSK 201
P + YG ++A E+ +F I R IYGP T + P + +
Sbjct: 172 PQDAYGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTS 231
Query: 202 GEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV 259
++ E + D + R ++ + V+ +L LT E +N+G + VS +MAE+
Sbjct: 232 TDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREP------VNIGSDEMVSMNEMAEM 285
Query: 260 V 260
V
Sbjct: 286 V 286
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL---LLDALP---HSFVF 56
K RV V GGTG+LG +++ L E Y V T + P + L LP F
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLE---NGYSVNTTIRADPERKRDVSFLTNLPGASEKLHF 57
Query: 57 FDVDLKSGSGFDA 69
F+ DL + F A
Sbjct: 58 FNADLSNPDSFAA 70
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 147 PVNVYGKSKVAAEKFIYEKCSNFAIL----RSSIIYGP-QTISPVPKSLPIQWIDSVLSK 201
P + +G K+A E+ +F I R IYGP T + P + +
Sbjct: 172 PQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTS 231
Query: 202 GEKVEFFHD--ECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEV 259
++ E + D + R ++ + V+ +L LT E +N+G + VS +MAE+
Sbjct: 232 TDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREP------VNIGSDEMVSMNEMAEM 285
Query: 260 V 260
V
Sbjct: 286 V 286
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 32/230 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K+V + G G +G H+ + L E K V + +T + L D +FV
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV--VGIDNFATGRREHLKDHPNLTFV-------E 72
Query: 64 GSGFDAVALK--FG--QPDVVVNCAALSVPRVCENDPDSAMSINVPSSL--VNWLSSFTE 117
GS D + G QPD VV+ AA DPD + + + + N + + +
Sbjct: 73 GSIADHALVNQLIGDLQPDAVVHTAA------SYKDPDDWYNDTLTNCVGGSNVVQAAKK 126
Query: 118 NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVN----VYGKSKVAAEKFIYEKCSNFAILR 173
N ++ T Y GVK + P N Y SK A E ++ +F R
Sbjct: 127 NNVGRFVYFQTALCY-GVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVTFR 185
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVK 223
+ + GP+ +S LPI + LS+G+K F R V+V+D+ +
Sbjct: 186 LANVVGPRNVS---GPLPIFF--QRLSEGKKC-FVTKARRDFVFVKDLAR 229
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 101/240 (42%), Gaps = 27/240 (11%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ + +L+ GG G++G +L E K V + L + P S F
Sbjct: 8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSN--TLFSNNRPSSLGHF--- 62
Query: 61 LKSGSGF--DAVALKFGQP-----------DVVVNCAALSVPRVCENDPDSAMSINVPSS 107
K+ GF + +A P D + + AA+S + + + M N +
Sbjct: 63 -KNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTML--NQELVMKTNY-QA 118
Query: 108 LVNWLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCS 167
+N L +K+ +I+ S+ VY K+ +P NVYG SK+ ++F+ +
Sbjct: 119 FLNLLE-IARSKKAKVIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSN 177
Query: 168 -NFAI-LRSSIIYGPQTI-SPVPKSLPIQWIDSVLSKGE-KVEFFHDECRCPVYVRDVVK 223
N + LR +YGP+ S+ +Q ++ E K+ F ++ R VY+ DV++
Sbjct: 178 DNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQ 237
>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|B Chain B, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|C Chain C, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|1GY8|D Chain D, Trypanosoma Brucei Udp-Galactose 4' Epimerase
pdb|2CNB|A Chain A, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|B Chain B, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|C Chain C, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|2CNB|D Chain D, Trypanosoma Brucei Udp-Galactose-4-Epimerase In Ternary
Complex With Nad And The Substrate Analogue
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
Length = 397
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGL 23
S RVLV GG GY+G H ++ L
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRAL 22
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 2 SKKRVLVVGGTGYLGQHLLQG 22
S+ R+L++G TGY+G+H+ +
Sbjct: 3 SRSRILLIGATGYIGRHVAKA 23
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 3 KKRVLVVGGTGYLGQHLLQG 22
K RVL+VGGTGY+G+ ++
Sbjct: 4 KSRVLIVGGTGYIGKRIVNA 23
>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
pdb|1VL8|B Chain B, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
Length = 267
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVAATH--HSTPLPQLLLDALPHSFVFFDVDLKSG 64
LV GG+ LG + QGL+E G VA+ + ++ Q L + + F D+ +
Sbjct: 25 LVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY 83
Query: 65 SG----FDAVALKFGQPDVVVNCAALSVPRVCENDP 96
+AV KFG+ D VVN A ++ E P
Sbjct: 84 EEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFP 119
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
++ ++ LV G TG LG+ + + L +G + T L +L + FV F +
Sbjct: 5 LTGRKALVTGATGGLGEAIARAL-HAQGAIVGLHGTREE-KLKELAAELGERIFV-FPAN 61
Query: 61 LKSGSGFDAVALK----FGQPDVVVNCAALS----VPRVCENDPDSAMSINVPS 106
L A+ K G D++VN A ++ R+ + D D+ +++N+ S
Sbjct: 62 LSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTS 115
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
++ ++ LV G TG LG+ + + L +G + T L +L + FV F +
Sbjct: 8 LTGRKALVTGATGGLGEAIARAL-HAQGAIVGLHGTREE-KLKELAAELGERIFV-FPAN 64
Query: 61 LKSGSGFDAVALK----FGQPDVVVNCAALS----VPRVCENDPDSAMSINVPS 106
L A+ K G D++VN A ++ R+ + D D+ +++N+ S
Sbjct: 65 LSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTS 118
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 20/186 (10%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS----TPLPQLLL---DALPHSFVF 56
++VLV GG GY+G H + L E P + H++ LP+ L + S F
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
++D+ + K+ V++ A L P +N+ + + L
Sbjct: 63 EEMDILDQGALQRLFKKY-SFMAVIHFAGLKAMGESVQKPLDYYRVNLTGT-IQLLEIMK 120
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP----VNVYGKSKVAAEKFIYEKCS----- 167
+ L+ S+ VY + Y DE P N YGKSK E+ I + C
Sbjct: 121 AHGVKNLVFSSSATVYGNPQ--YLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 168 NFAILR 173
N +LR
Sbjct: 179 NVVLLR 184
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 20/186 (10%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS----TPLPQLLL---DALPHSFVF 56
++VLV GG GY+G H + L E P + H++ LP+ L + S F
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
++D+ + K+ V++ A L P +N+ + + L
Sbjct: 63 EEMDILDQGALQRLFKKY-SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGT-IQLLEIMK 120
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP----VNVYGKSKVAAEKFIYEKCS----- 167
+ L+ S+ VY + Y DE P N YGKSK E+ I + C
Sbjct: 121 AHGVKNLVFSSSATVYGNPQ--YLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 168 NFAILR 173
N +LR
Sbjct: 179 NVVLLR 184
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
E L H +QV ++ E P +N+Y ++ + C N +L ++ Y
Sbjct: 330 EELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFY 386
Query: 179 GPQTISP----VPKSLPIQWI 195
G +T+ P P S P++ +
Sbjct: 387 GTRTMEPYRIFFPGSHPVRGV 407
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 15/174 (8%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS----TPLPQLLL---DALPHSFVF 56
++VLV GG GY+G H + L E P + H++ LP+ L + S F
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 57 FDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
++D+ + K+ V++ A L P +N+ + + L
Sbjct: 63 EEMDILDQGALQRLFKKY-SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGT-IQLLEIMK 120
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAP----VNVYGKSKVAAEKFIYEKC 166
+ L+ S+ VY + Y DE P N YGKSK E+ I + C
Sbjct: 121 AHGVKNLVFSSSATVYGNPQ--YLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
E L H +QV ++ E P +N+Y ++ + C N +L ++ Y
Sbjct: 296 EELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFY 352
Query: 179 GPQTISP----VPKSLPIQWI 195
G +T+ P P S P++ +
Sbjct: 353 GTRTMEPYRIFFPGSHPVRGV 373
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
E L H +QV ++ E P +N+Y ++ + C N +L ++ Y
Sbjct: 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFY 351
Query: 179 GPQTISP----VPKSLPIQWI 195
G +T+ P P S P++ +
Sbjct: 352 GTRTMEPYRIFFPGSHPVRGV 372
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
E L H +QV ++ E P +N+Y ++ + C N +L ++ Y
Sbjct: 294 EELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFY 350
Query: 179 GPQTISP----VPKSLPIQWI 195
G +T+ P P S P++ +
Sbjct: 351 GTRTMEPYRIFFPGSHPVRGV 371
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
E L H +QV ++ E P +N+Y ++ + C N +L ++ Y
Sbjct: 294 EELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFY 350
Query: 179 GPQTISP----VPKSLPIQWI 195
G +T+ P P S P++ +
Sbjct: 351 GTRTMEPYRIFFPGSHPVRGV 371
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 80/215 (37%), Gaps = 39/215 (18%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL-------LDALPHSFVF 56
K ++V GG G++G + + + Y+ H T L +L L+A+ V
Sbjct: 5 KNIIVTGGAGFIGSNFVHYV-------YNNHPDVHVTVLDKLTYAGNKANLEAILGDRVE 57
Query: 57 FDV-DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSF 115
V D+ D +A K D +V+ AA S NDP + N + L
Sbjct: 58 LVVGDIADAELVDKLAAK---ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYT--LLEA 112
Query: 116 TENKENLLIHLSTDQVY-------------EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162
+ H+STD+VY EG + E P + Y +K A++ +
Sbjct: 113 ARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIV 172
Query: 163 YEKCSNFA----ILRSSIIYGPQTISPVPKSLPIQ 193
+F I S YGP + K +P Q
Sbjct: 173 KAWVRSFGVKATISNCSNNYGP--YQHIEKFIPRQ 205
>pdb|1JBO|A Chain A, The 1.45a Three-Dimensional Structure Of C-Phycocyanin
From The Thermophylic Cyanobacterium Synechococcus
Elongatus
pdb|3L0F|A Chain A, High Resolution Structure Of C-Phycocyanin From
Thermosynechococcus Elongatus
Length = 162
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 7 LVVGGTGYLGQHLLQGLSEI 26
LV GGTG + ++L+ GLSEI
Sbjct: 99 LVAGGTGPMDEYLIAGLSEI 118
>pdb|1I7Y|A Chain A, Crystal Structure Of C-Phycocyanin Of Synechococcus
Vulcanus At 2.5 Angstroms.
pdb|1KTP|A Chain A, Crystal Structure Of C-Phycocyanin Of Synechococcus
Vulcanus At 1.6 Angstroms
pdb|1ON7|A Chain A, Unmethylated Form Of C-Phycocyanin From Themosynechococcus
Vulcanus At 2.7a
pdb|3O18|A Chain A, Crystal Structure Of C-Phycocyanin From Themosynechococcus
Vulcanus At 1.35 Angstroms Resolution
pdb|3O2C|A Chain A, Crystal Structure Of A Rod Form Of C-Phycocyanin From
Themosynechococcus Vulcanus At 1.5 Angstroms
Length = 162
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 7 LVVGGTGYLGQHLLQGLSEI 26
LV GGTG + ++L+ GLSEI
Sbjct: 99 LVAGGTGPMDEYLIAGLSEI 118
>pdb|1PHN|A Chain A, Structure Of Phycocyanin From Cyanidium Caldarium At 1.65a
Resolution
Length = 162
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVA 34
LVVGGTG + ++L+ GL EI + +D++
Sbjct: 99 LVVGGTGPMDEYLIAGLEEIN-RTFDLS 125
>pdb|3BRP|A Chain A, Crystal Structure Of C-Phycocyanin From Galdieria
Sulphuraria
pdb|3KVS|A Chain A, The High Resolution Structure Of C-Phycocyanin From
Galdieria Sulphuraria
Length = 162
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 7 LVVGGTGYLGQHLLQGLSEIEGKPYDVA 34
LVVGGTG + ++L+ GL EI + +D++
Sbjct: 99 LVVGGTGPMDEYLIAGLEEIN-RTFDLS 125
>pdb|2JV5|A Chain A, Nogo54
Length = 54
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 130 QVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAI 171
++Y+GV ++ DE P Y +S+VA + + +K SN A+
Sbjct: 1 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSAL 42
>pdb|2G31|A Chain A, Human Nogo-A Functional Domain: Nogo60
Length = 60
Score = 27.7 bits (60), Expect = 7.8, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 130 QVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAI 171
++Y+GV ++ DE P Y +S+VA + + +K SN A+
Sbjct: 1 RIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSAL 42
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 120 ENLLIHLSTDQVYEGVKSFYKEEDEIAP-VNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
E L H +QV ++ E P +N+Y ++ + C N +L ++ Y
Sbjct: 295 EELKAHWKWEQVLAXCQAIISSNSERLPDINIY---QLKVLDCAXDACINLGLLEEALFY 351
Query: 179 GPQTISP----VPKSLPIQWI 195
G +T P P S P++ +
Sbjct: 352 GTRTXEPYRIFFPGSHPVRGV 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,499,265
Number of Sequences: 62578
Number of extensions: 388367
Number of successful extensions: 1144
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 83
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)