BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020880
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii
GN=MAT2B PE=2 SV=1
Length = 334
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 154/313 (49%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 75 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 132 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ +MA +A+ +S ++P++ S V G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPV-LGAQRPRNAQLDCSKL-ETLGIG 306
Query: 304 PVT-YKDGVKLTL 315
T ++ G+K +L
Sbjct: 307 QRTPFRIGIKESL 319
>sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens
GN=MAT2B PE=1 SV=1
Length = 334
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 154/313 (49%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLVTGATGLLGRAVHK---EFQQNNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ + F QP V+V+CAA P V EN PD+A +NV +S L+ L
Sbjct: 75 SNAVHHIIHDF-QPHVIVHCAAERRPDVVENQPDAASQLNVDAS--GNLAKEAAAVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+EED AP+N+YGK+K+ EK + E A+LR I+YG +
Sbjct: 132 IYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ +MA +A+ +S ++P++ S V G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPV-LGAQRPRNAQLDCSKL-ETLGIG 306
Query: 304 PVT-YKDGVKLTL 315
T ++ G+K +L
Sbjct: 307 QRTPFRIGIKESL 319
>sp|Q5BJJ6|MAT2B_DANRE Methionine adenosyltransferase 2 subunit beta OS=Danio rerio
GN=mat2b PE=2 SV=1
Length = 323
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 148/313 (47%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVLV G TG LG+ + + E + +D ++ P F +L
Sbjct: 18 RRVLVTGATGLLGRAVYK---EFKNNDWDALGCGYNRARP-----------FFLKCNLLD 63
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
V F QP V+V+CAA P V E ++AM++NV + + E + L
Sbjct: 64 EDAVRGVIQSF-QPHVIVHCAAERRPDVVERHTEAAMNLNVHACA----TLAKEAGGSFL 118
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++STD V++G Y E D P+N+YGKSK+ E+ I C A+LR I++G +
Sbjct: 119 IYISTDYVFDGRNPPYGENDAPNPLNLYGKSKLEGEREILRHCPGAAVLRVPILFG--EV 176
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
V +S + V E H + R P Y DV ++ + R L +D+ ++ +
Sbjct: 177 EKVEESAVTVLFERVQEGAESCTIDHCQQRFPTYTNDVARVCRNMAERAL-QDQSLRGIF 235
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKL-VQTLNI 302
+ +++++ +M +A+ +S + P++ G Q P + ++ ++L + L++
Sbjct: 236 HYSAKEQMTKYEMTCAIADAFNLPSSHLIPMTEQPAGAGAQRPQNAQLECSRLELLGLSV 295
Query: 303 DPVTYKDGVKLTL 315
+ +K+ ++ +L
Sbjct: 296 ESTPFKNAIRDSL 308
>sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta OS=Bos taurus
GN=MAT2B PE=2 SV=1
Length = 334
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 154/316 (48%), Gaps = 23/316 (7%)
Query: 1 MSKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD 60
+ +RVL+ G TG LG+ + + E + + P+ F V+
Sbjct: 26 IPNRRVLITGATGLLGRAVYK---EFQQNNWHAVGCGFRRARPK-----------FEQVN 71
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
L + + F QP V+V+CAA P V EN PD+A +NV +S L+
Sbjct: 72 LLDSNAVHHIIYDF-QPHVIVHCAAERRPDVVENHPDAASQLNVDAS--GNLAKEAAAIG 128
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGP 180
LI++S+D V++G Y+EED P+N+YGK+K+ EK + E A+LR ++YG
Sbjct: 129 AFLIYISSDYVFDGTNPPYREEDIPNPLNLYGKTKLEGEKAVLENNLGAAVLRIPVLYG- 187
Query: 181 QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQ 240
+ + +S D V + H + R P +V+DV + L + + D ++
Sbjct: 188 -EVERLEESAVTIMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRML-DPSIK 245
Query: 241 LLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTL 300
+ G +++++ +MA +A+ +S ++P++ S V G Q P + +D ++L +TL
Sbjct: 246 GTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPV-VGAQRPRNAQLDCSRL-ETL 303
Query: 301 NIDPVT-YKDGVKLTL 315
I T ++ G+K +L
Sbjct: 304 GIGQRTPFRIGIKESL 319
>sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit beta OS=Mus musculus
GN=Mat2b PE=2 SV=1
Length = 334
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 152/313 (48%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQSNWHTVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ F QP V+V+CAA P V E+ PD+A +NV +S L+ L
Sbjct: 75 SEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 132 IYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ +MA +A+ +S ++P++ S V G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVI-GAQRPKNAQLDCSKL-ETLGIG 306
Query: 304 PVT-YKDGVKLTL 315
T ++ G+K +L
Sbjct: 307 QRTPFRTGIKESL 319
>sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit beta OS=Rattus norvegicus
GN=Mat2b PE=2 SV=1
Length = 334
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 152/313 (48%), Gaps = 23/313 (7%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+RVL+ G TG LG+ + + E + + P+ F V+L
Sbjct: 29 RRVLITGATGLLGRAVYK---EFQQSNWHAVGCGFRRARPK-----------FEQVNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ F QP V+V+CAA P V E+ PD+A +NV +S L+ L
Sbjct: 75 SEAVHHLIHDF-QPHVIVHCAAERRPDVVESQPDAASQLNVGAS--GNLAKEAAAIGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y EED +P+N+YGK+K+ EK + E A+LR ++YG +
Sbjct: 132 IYISSDYVFDGTNPPYTEEDIPSPLNLYGKTKLDGEKAVLENNLGAAVLRIPVLYG--EV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L + + D ++
Sbjct: 190 EKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVASVCRQLAEKRML-DPSIKGTF 248
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ +MA +A+ +S ++P++ S V G Q P + +D +KL +TL I
Sbjct: 249 HWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVI-GAQRPKNAQLDCSKL-ETLGIG 306
Query: 304 PVT-YKDGVKLTL 315
T ++ G+K +L
Sbjct: 307 QRTPFRIGIKESL 319
>sp|Q566L8|MAT2B_XENTR Methionine adenosyltransferase 2 subunit beta OS=Xenopus tropicalis
GN=mat2b PE=2 SV=1
Length = 334
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 149/312 (47%), Gaps = 21/312 (6%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+R L+ G TG LG+ + + E + + V +S P+ F ++L
Sbjct: 29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FEYLNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ A+ F +P V+++CAA P + E+ P+ A +NV +S L+ L
Sbjct: 75 AAAVKALIQDF-KPHVIIHCAAERRPDIVESQPEFASLLNVVAS--ENLAKEAAGVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+E+ P+N+YGK+K+ E+ + A+LR ++YG +
Sbjct: 132 IYVSSDYVFDGTSPPYREDSVPNPLNLYGKTKLEGERAVLHNNEGAAVLRVPVLYG--DV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P YV+DV + L LT R L +D ++ +
Sbjct: 190 EKLSESAVTILFDKVQFSNKSANMDHWQQRFPTYVKDVASVCLQLTERRL-QDPSIKGIY 248
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ +M +A+ +S ++P++ V P + +D +KL +
Sbjct: 249 HWSGNEQMTKYEMTCAMADAFNLPSSHLRPITDEPVG-ATPRPWNPQLDCSKLEKIGIGQ 307
Query: 304 PVTYKDGVKLTL 315
++ G++ +L
Sbjct: 308 RTPFRVGIRESL 319
>sp|Q4QQZ4|MAT2B_XENLA Methionine adenosyltransferase 2 subunit beta OS=Xenopus laevis
GN=mat2b PE=2 SV=1
Length = 334
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 151/312 (48%), Gaps = 21/312 (6%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
+R L+ G TG LG+ + + E + + V +S P+ F ++L
Sbjct: 29 RRALITGATGLLGRAVYK---EFKENSWHVLGCGYSRARPR-----------FECLNLLD 74
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
+ A+ F +P V+++CAA P + E+ P+ A +NV +S L+ L
Sbjct: 75 EAAVKALIQDF-KPHVIIHCAAERRPDIVESQPELASLLNVVAS--ENLAKVAAGVGAFL 131
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
I++S+D V++G Y+E+ P+N+YGK+K+ E+ + + A+LR ++YG +
Sbjct: 132 IYVSSDYVFDGTSPPYREDSIPHPLNLYGKTKLDGERAVLQNNEGAAVLRVPVMYG--DV 189
Query: 184 SPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLL 243
+ +S D V + H + R P +V+DV + L LT R + +D ++ +
Sbjct: 190 EKLSESAVTILFDKVQFSNKSANLDHCQQRFPTHVKDVATVCLQLTERKI-QDPSIKGIY 248
Query: 244 NVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNID 303
+ G +++++ ++A +A+ +S ++P++ V P + +D +KL +
Sbjct: 249 HWSGNEQMTKYEIACAMADAFNLPSSHLRPITDEPVG-ATPRPWNPQLDCSKLEKMGIGQ 307
Query: 304 PVTYKDGVKLTL 315
++ G++ TL
Sbjct: 308 RTPFRVGIRETL 319
>sp|P55463|RMLD_RHISN Probable dTDP-4-dehydrorhamnose reductase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03570 PE=3 SV=1
Length = 296
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 69 AVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLST 128
A +++ PD++V+ AA + E++P A ++N V L+ +IHLST
Sbjct: 43 ASSIRDAAPDIIVSLAAYTAVDKAESEPYEAFAVNRDG--VQALAEAAAGLGVPVIHLST 100
Query: 129 DQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVP 187
D V++G K Y EED P++VYG+SK+ E + N ILR+S +Y + V
Sbjct: 101 DYVFDGAKPVPYCEEDRTGPISVYGRSKLEGEFAVASANPNHTILRTSWVYSRYGQNFVK 160
Query: 188 KSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDK-QMQLLLNVG 246
K L + +++ D+ CP D+ ++ + R LS ++ + ++
Sbjct: 161 KMLRLA------DTNDELNVVADQLGCPTSADDISVAVMTIARRMLSSSSADLRGIFHLS 214
Query: 247 GPDRVSRVQMAE----VVAEIRGYSTSLIKPVSASSVDRGVQSPADISMDITKLVQTLNI 302
G S A+ V EI G + +SA+ + PA+ + KL +T I
Sbjct: 215 GSGEASWAAFAKYVFSVYDEITGRQIK-VHDISAAEYPTPARRPANSRLHCDKLERTFGI 273
>sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus
subtilis (strain 168) GN=spsK PE=3 SV=3
Length = 283
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 41/230 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLD-----ALPHSFVFFDV 59
+VLV G G LG L + L + Y+V A L + +++ ++ HSF +
Sbjct: 3 KVLVTGAGGQLGLELCRQLKQ---AGYEVIA------LTKKMMNIADQRSVRHSFGHY-- 51
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
QPD+VVN AA + CE + D A IN + L S
Sbjct: 52 ----------------QPDIVVNSAAFTSVDQCEKELDKAYLINGIGAYYTALESTRIGA 95
Query: 120 ENLLIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
+ +H+STD V+ G + Y+E+D + P +YGKSK E+ I + I+R+S +Y
Sbjct: 96 Q--YVHISTDYVFNGKGTQPYREDDPLDPKTIYGKSKRLGEELIRLTTKDSTIIRTSWVY 153
Query: 179 GPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILAL 228
G + V L + +++ D+ P Y +D+ + ++ L
Sbjct: 154 GHGGSNFVETMLKLA------ETKQELRVVSDQIGSPTYTKDLAEAVIKL 197
>sp|A0QTF8|RMLD_MYCS2 dTDP-4-dehydrorhamnose reductase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=rmlD PE=1 SV=1
Length = 327
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 20/225 (8%)
Query: 68 DAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKENLLIH 125
DAV DVV+NCAA + E++P+ A ++N P +L ++ LIH
Sbjct: 74 DAVRRFVANGDVVINCAAYTQVDKAEDEPERAHAVNAVGPGNLAKACAAVDAG----LIH 129
Query: 126 LSTDQVYEGVK--SFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTI 183
+STD V+ V + Y+ +DE PVN+YG++K+A E+ + + ++R++ +Y
Sbjct: 130 ISTDYVFGAVDRDTPYEVDDETGPVNIYGRTKLAGEQAVLAAKPDAYVVRTAWVYRGGDG 189
Query: 184 SPVPKSLPIQWIDSVLSKGE-KVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLL 242
S ++ L+ G+ ++ D+ P Y D+V +L + + + +
Sbjct: 190 SDFVATM------RRLAAGDGAIDVVADQVGSPTYTGDLVGALLQIVDGGVEPG-----I 238
Query: 243 LNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPA 287
L+ SR A E G ++P + R P+
Sbjct: 239 LHAANAGVASRFDQARATFEAVGADPERVRPCGSDRHPRPAPRPS 283
>sp|P26392|RMLD_SALTY dTDP-4-dehydrorhamnose reductase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=rfbD PE=1 SV=1
Length = 299
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL-LDALPHSFVFFDVDLKSG 64
+L+ G TG +G L + L+ P+ L+ LD HS F D +
Sbjct: 3 ILLFGKTGQVGWELQRSLA----------------PVGNLIALDV--HSKEFCG-DFSNP 43
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
G K +PDV+VN AA + E++P+ A +N S V ++ ++
Sbjct: 44 KGVAETVRKL-RPDVIVNAAAHTAVDKAESEPELAQLLNATS--VEAIAKAANETGAWVV 100
Query: 125 HLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIY 178
H STD V+ G ++E D +P+NVYGK+K+A EK + + C I R+S +Y
Sbjct: 101 HYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVY 155
>sp|P37760|RMLD_ECOLI dTDP-4-dehydrorhamnose reductase OS=Escherichia coli (strain K12)
GN=rfbD PE=3 SV=2
Length = 299
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 76 QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIHLSTDQVYEGV 135
+PD++VN AA + E++P+ A IN S V ++ +IH STD V+ G
Sbjct: 54 RPDIIVNAAAHTAVDKAESEPEFAQLINATS--VEAIAKAANEVGAWVIHYSTDYVFPGN 111
Query: 136 KSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
+ E D AP+NVYG++K+A EK + E C+ I R+S +Y
Sbjct: 112 GDMPWLETDATAPLNVYGETKLAGEKALQEYCAKHLIFRTSWVYA 156
>sp|P37778|RMLD_SHIFL dTDP-4-dehydrorhamnose reductase OS=Shigella flexneri GN=rfbD PE=1
SV=2
Length = 299
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLL-LDALPHSFVFFDVDLKSG 64
+L+ G TG +G L + L+ PL L+ LD HS + D +
Sbjct: 3 ILLFGKTGQVGWELQRALA----------------PLGNLIALDV--HSTDYCG-DFSNP 43
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
G A +K +PDV+VN AA + E++P+ A +N ++ V ++ +I
Sbjct: 44 EGV-AETVKKIRPDVIVNAAAHTAVDKAESEPNFAQLLN--ATCVEAIAKAANEVGAWVI 100
Query: 125 HLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYG 179
H STD V+ G + E D AP+NVYG++K+A EK + E C+ I R+S +Y
Sbjct: 101 HYSTDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYA 156
>sp|O34886|YTCB_BACSU Uncharacterized UDP-glucose epimerase YtcB OS=Bacillus subtilis
(strain 168) GN=ytcB PE=3 SV=1
Length = 316
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 140/326 (42%), Gaps = 34/326 (10%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDV-------AATHHSTPLPQLLLDALPHSFVFF 57
++LV G G++G HL + L ++ K ++V T S L L F F
Sbjct: 2 KILVTGAAGFIGSHLCEEL--LKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFI 59
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTE 117
+L + D +L G DV+ + AA+ R + + + +L L + E
Sbjct: 60 KENLLTA---DLASLLEGV-DVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACRE 115
Query: 118 NKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA----ILR 173
+ + ST VY + E ++P++ YG +K+ EK + +F ILR
Sbjct: 116 HSIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVTKLTGEKLCHVYKQSFGIPIVILR 175
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKIILALTNR 231
+YGP+ P + I L + + + F D + R Y+ D VK I A+
Sbjct: 176 FFTVYGPRQ---RPDMAFHRLIKQHLQQ-KPLTIFGDGQQSRDFTYISDCVKGITAV--- 228
Query: 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQSPADISM 291
L + + +N+GG +R S +++ ++ +I G +L D+ P++
Sbjct: 229 -LGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATL------HFSDKIAGEPSNTWA 281
Query: 292 DITKLVQTLNIDPVT-YKDGVKLTLA 316
DI+K Q L+ DP T KDG+ +A
Sbjct: 282 DISKAKQLLHYDPATSLKDGLTNEIA 307
>sp|Q46769|RMLD_ECOLX dTDP-4-dehydrorhamnose reductase OS=Escherichia coli GN=rfbD PE=1
SV=1
Length = 301
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+L+ G TG +G L + L+ PL L+ AL + D +
Sbjct: 3 ILLFGKTGQVGWELQRALA----------------PLGNLI--ALDVHSTDYCGDFSNPE 44
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
G A +K +PDV+VN AA + E++P+ A +N S V ++ +IH
Sbjct: 45 GV-AETVKKIRPDVIVNAAAHTDVDKAESEPEFAQLLNATS--VEAIAKAANEVGAWVIH 101
Query: 126 LSTDQVYEGVKS--FYKEEDEIAPVNVYGKSKVAAEKFIYEK-CSNFAILRSSIIY 178
STD V+ G + D AP+NVYG++K+++EK +K C I R+S +Y
Sbjct: 102 YSTDYVFPGTGEIPWQGGTDATAPLNVYGETKLSSEKKALQKHCGKHIIFRTSWVY 157
>sp|O95455|TGDS_HUMAN dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=2 SV=1
Length = 350
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 57/340 (16%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHMIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E +NV + V +S+
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFE-----FTYVNVYGTHV-LVSA 128
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA---PVNVYGKSKVAAEKFIYEKCSNF-- 169
E + I++STD+VY G S KE DE + P N Y SK AAE F+ +
Sbjct: 129 AHEARVEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKF 186
Query: 170 --AILRSSIIYGPQTISP--VPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVK 223
I RSS +YGP +PK + S+L K + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQYPEKVIPKFI------SLLQHNRKCCIHGSGLQTRNFLYATDVVE 240
Query: 224 IILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASS----- 278
L + L + K + + N+G +S VQ+A+ + + LIK ++ S
Sbjct: 241 AFLTV----LKKGKPGE-IYNIGTNFEMSVVQLAKELIQ-------LIKETNSESEMENW 288
Query: 279 VDRGVQSPA-DISMDI-TKLVQTLNIDP-VTYKDGVKLTL 315
VD P D+ + ++ + L P V +K+G+K T+
Sbjct: 289 VDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTI 328
>sp|P29781|RMLD_STRGR dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL
PE=1 SV=1
Length = 304
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ R LV G +G LG+ L L + G H +D+
Sbjct: 6 RPRWLVTGASGMLGRELTP-LLDRRGAAVTALGRGH--------------------LDIT 44
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
G+ + + +P VVVNCAA + E++P AM++N L+ +
Sbjct: 45 DGAAVRSAVAEH-RPAVVVNCAAWTAVDEAESEPALAMAVN--GEGPRHLAQACRAVGAV 101
Query: 123 LIHLSTDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA-ILRSSIIYG 179
L+ LSTD V+ G Y+E+ P VYG +K A E+ + E + I+R++ +YG
Sbjct: 102 LLQLSTDYVFPGSGGRPYREDHPTGPRTVYGCTKRAGERAVLEVLPDTGYIVRTAWLYG 160
>sp|A6QLW2|TGDS_BOVIN dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1
Length = 355
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 128/278 (46%), Gaps = 38/278 (13%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHMIVSL--VEDYPNYMIINLDKLDYCASLKNLETISNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E +NV + V +S+
Sbjct: 76 DI-CDSHFVKLLFETEKIDIVLHFAAQTHVDLSFVRAFE-----FTYVNVYGTHV-LVSA 128
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA---PVNVYGKSKVAAEKFIYEKCSNF-- 169
E + I++STD+VY G S KE DE + P N Y SK AAE F+ +
Sbjct: 129 AHEARVEKFIYVSTDEVYGG--SLDKEFDESSPKQPTNPYASSKAAAECFVQSYWEQYKF 186
Query: 170 --AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEK--VEFFHDECRCPVYVRDVVKII 225
I RSS +YGP P+ + ++I S+L K + + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQ---YPEKVIPKFI-SLLQHNRKCCIHGTGLQTRNFLYATDVVEAF 242
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEI 263
L + L + K + + N+G +S +Q+A+ + ++
Sbjct: 243 LTV----LKKGKPGE-IYNIGTNFEMSVLQLAKELIQL 275
>sp|P96871|RMLD_MYCTU dTDP-4-dehydrorhamnose reductase OS=Mycobacterium tuberculosis
GN=rmlD PE=1 SV=1
Length = 304
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 21/211 (9%)
Query: 78 DVVVNCAALSVPRVCENDPDSAMSINV--PSSLVNWLSSFTENKENLLIHLSTDQVYEG- 134
DVV+NCAA + E++ A ++N P L + LIH+STD V++G
Sbjct: 56 DVVINCAAYTDVDGAESNEAVAYAVNATGPQHLARACARVGAR----LIHVSTDYVFDGD 111
Query: 135 ----VKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSIIYGPQTISPVPKSL 190
Y+ DE AP VY +SK+A E+ + A++R++ +Y T
Sbjct: 112 FGGAEPRPYEPTDETAPQGVYARSKLAGEQAVLAAFPEAAVVRTAWVYTGGTGKDF---- 167
Query: 191 PIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDR 250
+ + + + +V+ D+ P YV D+ + +LAL + + +L+
Sbjct: 168 -VAVMRRLAAGHGRVDVVDDQTGSPTYVADLAEALLALADAGV-----RGRVLHAANEGV 221
Query: 251 VSRVQMAEVVAEIRGYSTSLIKPVSASSVDR 281
VSR A V E G ++PVS++ R
Sbjct: 222 VSRFGQARAVFEECGADPQRVRPVSSAQFPR 252
>sp|B8CVJ3|HLDD_SHEPW ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=hldD PE=3 SV=1
Length = 317
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 124/273 (45%), Gaps = 29/273 (10%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQL--LLDALPHSFVFFDVDLKS 63
++V G G++G +L++ L+++ G+ D+ A T ++ L D ++ D L+
Sbjct: 2 IVVTGAAGFIGSNLVKALNDM-GRN-DIIAVDDLTDGTKMFNLADCEIADYLDKDQFLEQ 59
Query: 64 GSGFDAVALKF-GQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
+A +F G+ +V+ + A S E D MS N S L F + +
Sbjct: 60 -----IIAGEFDGKIEVIFHQGACS--STTEWDGKFMMSNNYEYSKT--LLQFCDRTKCQ 110
Query: 123 LIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSN--FAILRSSIIYGP 180
I+ S+ VY G + F ++ D P+NVY SK ++++ ++ N A LR +YGP
Sbjct: 111 YIYASSASVYGGSEKFIEQRDLEKPLNVYAYSKFLFDQYVRQQKPNCQVAGLRYFNVYGP 170
Query: 181 QTISPVP-KSLPIQWIDSVLSKG-----EKVEFFHD--ECRCPVYVRDVVKIILALTNRW 232
+ S+ + + + + G E V+ + + + R VYV DVVK+ N W
Sbjct: 171 REQHKGGMASVAFHFNNQLNANGICRLFEGVDGYENGQQLRDFVYVEDVVKV-----NLW 225
Query: 233 LSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
L ++ ++ + N G S +A V G
Sbjct: 226 LWQNSEVSGIFNCGTGQAQSFNDVANAVIAHHG 258
>sp|P27830|RMLB2_ECOLI dTDP-glucose 4,6-dehydratase 2 OS=Escherichia coli (strain K12)
GN=rffG PE=1 SV=3
Length = 355
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 118/276 (42%), Gaps = 24/276 (8%)
Query: 4 KRVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+++L+ GG G++G L++ ++E V ++ L L A F F VD+
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDIC 61
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFT 116
+ V + QPD V++ AA S + P + + N+ + + ++ T
Sbjct: 62 DRAELARVFTEH-QPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALT 120
Query: 117 ENKENLLI--HLSTDQVYEGVKS---FYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFA- 170
E+K++ H+STD+VY + S F+ E AP + Y SK +++ + +
Sbjct: 121 EDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGL 180
Query: 171 ---ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRDVVKIILA 227
I S YGP K +P+ ++++ K V + R +YV D + +
Sbjct: 181 PTLITNCSNNYGPYHFP--EKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYC 238
Query: 228 LTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEI 263
++ ++ N+GG + + + E + E+
Sbjct: 239 -----VATTGKVGETYNIGGHNERKNLDVVETICEL 269
>sp|Q331Q7|GERKI_STRSQ dTDP-4-dehydro-6-deoxyglucose reductase OS=Streptomyces sp.
GN=gerKI PE=1 SV=1
Length = 326
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 155/335 (46%), Gaps = 46/335 (13%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHS-TPLPQLLLDALPHSFVFFDVD 60
+ + VLV G G++G H ++ +++ + +V A + + P Q L AL + +
Sbjct: 7 AGRTVLVTGALGFIGSHFVR---QLDARGAEVLALYRTERPEIQAELAAL-NRVRLVRTE 62
Query: 61 LKSGSGFDAVALKFGQP--DVVVNCAAL------SVPRVCENDPDSAMSINVPSSLVNWL 112
L+ S A K+ P D VV+CAA+ + R E + +I S+L+N +
Sbjct: 63 LRDESDVRG-AFKYLAPSIDTVVHCAAMDGNAQFKLERSAEILDSNQRTI---SNLLNCV 118
Query: 113 SSFTENKENLLIHLSTDQVYEGVKSF-YKEEDEIAPV-----NVYGKSKVAAE---KFIY 163
F + ++ +S+ ++Y + +EED+ N Y SK E +
Sbjct: 119 RDFGVGE---VVVMSSSELYSASPTVAAREEDDFRRSMRYTDNGYVLSKTYGEILARLHR 175
Query: 164 EK-CSNFAILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRD 220
E+ +N ++R +YGP + I + + GE++E + D + R V+V D
Sbjct: 176 EQFGTNVFLVRPGNVYGPGDGFDCSRGRVIPSMLAKADAGEEIEIWGDGSQTRSFVHVAD 235
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSL-IKPVSASSV 279
+V+ L R L K + +NV G ++VS +++A +V + G + + P
Sbjct: 236 LVRASL----RLLETGKYPE--MNVAGAEQVSILELAGMVMAVLGRPERIRLDP------ 283
Query: 280 DRGVQSPADISMDITKLVQTLNIDPVTYKDGVKLT 314
R V +P+ + +D++++ + ++ DP + G++ T
Sbjct: 284 SRPVGAPSRL-LDLSRMSEVIDFDPQPLRAGLEET 317
>sp|Q8VDR7|TGDS_MOUSE dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=2
Length = 355
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 150/333 (45%), Gaps = 43/333 (12%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHSFVFFDV 59
KRVLV GG G++ H++ L +E P ++ + L L + ++ F
Sbjct: 18 KRVLVTGGAGFIASHVIVSL--VEDYPDYMIVNLDKLDYCASLKNLEPVSNKQNYKFIQG 75
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAA-----LSVPRVCENDPDSAMSINVPSSLVNWLSS 114
D+ S F + + + D+V++ AA LS R E +NV + V ++
Sbjct: 76 DI-CDSHFVKLLFEVEKIDIVLHFAAQTHVDLSFVRAFE-----FTYVNVYGTHVLVNAA 129
Query: 115 FTENKENLLIHLSTDQVYEGVKSFYKEEDEIA---PVNVYGKSKVAAEKFIYEKCSNF-- 169
+ E I++STD+VY G S +E DE + P N Y SK AAE F+ +
Sbjct: 130 YEAGVEK-FIYVSTDEVYGG--SLDQEFDESSPKQPTNPYASSKAAAECFVQSYWERYKF 186
Query: 170 --AILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHD--ECRCPVYVRDVVKII 225
I RSS +YGP P+ + ++I S+L K + R +Y DVV+
Sbjct: 187 PVVITRSSNVYGPHQY---PEKVIPKFI-SLLQHNRKCCIHGSGLQRRNFLYAADVVEAF 242
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQS 285
L + + + + N+G +S VQ+A+ + ++ + S + + S VD
Sbjct: 243 LTVLTK-----GEPGEIYNIGTNFEMSVVQLAKELIQLIKETNS--ESETESWVDYVSDR 295
Query: 286 PA-DISMDI-TKLVQTLNIDP-VTYKDGVKLTL 315
P D+ + ++ + +L P V +++G+K T+
Sbjct: 296 PHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTV 328
>sp|Q59083|EXOB_AZOBR UDP-glucose 4-epimerase OS=Azospirillum brasilense GN=exoB PE=3
SV=1
Length = 348
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 46/192 (23%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDALPHSFVFFDVD 60
RVLV GG GY+G H+L L++ G P D++A +A+P + + D
Sbjct: 10 RVLVTGGAGYIGSHVLHALTD-AGIPAVTIDDLSAGRR---------EAIPAAVPLVEGD 59
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+ S D V ++ + D V++ A SI VP S+V L + N
Sbjct: 60 IGSAELLDRV-MRDHRVDAVMHFAG---------------SIVVPESVVKPLDYYRNNTA 103
Query: 121 NLLIHL--------------STDQVYEGVKSF-YKEEDEIAPVNVYGKSKVAAEKFIYEK 165
N L L ST VY +S +E+ P+N YG SK+ E+ + +
Sbjct: 104 NSLTLLGACLRAGIDKVVFSSTAAVYGAPESVPIREDAPTVPINPYGASKLMTEQMLRDA 163
Query: 166 CSNFAILRSSII 177
+ LRS I+
Sbjct: 164 GAAHG-LRSVIL 174
>sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain
NGR234) GN=NGR_a03580 PE=3 SV=1
Length = 350
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 11/167 (6%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
R+LV GG G++G L++ L I + +V ++ L L ++ F D+
Sbjct: 2 RILVTGGAGFIGSALVRYLVSINAEVLNVDKLTYAGNLASLKPVEGLRNYRFLRADICDR 61
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFTEN 118
+ F QPD V++ AA S D + NV + + S+ ++N
Sbjct: 62 VAINEAFETF-QPDYVIHLAAESHVDRSITGADDFVQTNVNGTFTMLETARQYWSNLSQN 120
Query: 119 KENL--LIHLSTDQVYE--GVKSFYKEEDEIAPVNVYGKSKVAAEKF 161
++ ++H+STD+VY G + ++E P + Y SK A++ F
Sbjct: 121 RKAFFKMLHVSTDEVYGSLGDRGQFEEVSPYDPSSPYSASKAASDHF 167
>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0211 PE=3 SV=1
Length = 305
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 117/273 (42%), Gaps = 23/273 (8%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSGS 65
+LV GG G++G H++ L E YDV + T + ++ F + D++
Sbjct: 2 ILVTGGAGFIGSHIVDKLIE---NNYDVIILDNLTTGNKNNINPKAE---FVNADIRD-K 54
Query: 66 GFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLIH 125
D + F +VV++ AA R +P INV + +N L + + ++
Sbjct: 55 DLDE-KINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGT-INILEMMRKYDIDKIVF 112
Query: 126 LSTDQVYEGVKSFY--KEEDEIAPVNVYGKSKVAAEKFI--YEKCSN--FAILRSSIIYG 179
S+ G ++ E I P++ YG SK E++I Y + +AILR S +YG
Sbjct: 113 ASSGGAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYG 172
Query: 180 PQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIILALTNRWLSEDKQ 238
+ + +ID +L + F ++ R VYV DV K L N W +E
Sbjct: 173 ERQDPKGEAGVISIFIDKMLKNQSPIIFGDGNQTRDFVYVGDVAKANLMALN-WKNE--- 228
Query: 239 MQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLI 271
++N+G S ++ +++ G+ I
Sbjct: 229 ---IVNIGTGKETSVNELFDIIKHEIGFRGEAI 258
>sp|A3QJB2|HLDD_SHELP ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella loihica
(strain ATCC BAA-1088 / PV-4) GN=hldD PE=3 SV=1
Length = 317
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 31/274 (11%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD----VDL 61
++V G G++G +L++ L+ + G+ D+ A T ++ A + D ++
Sbjct: 2 IIVTGAAGFIGSNLVKALNNL-GRS-DIIAVDDLTDGTKMFNLADCEIADYLDKADFIEQ 59
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+ FD G+ +V+ + A S E D M+ N S L F E +
Sbjct: 60 IAQGQFD------GKVEVIFHQGACS--STTEWDGKFMMANNYEYSKT--LLHFCERNGS 109
Query: 122 LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK--CSNFAILRSSIIYG 179
I+ S+ VY G F ++ + P+NVY SK ++++ + + A LR +YG
Sbjct: 110 QFIYASSASVYGGSDKFIEQRELEKPLNVYAYSKFLFDQYVRQHNFTTQVAGLRYFNVYG 169
Query: 180 PQTISPVP-KSLPIQWIDSVLSKG-----EKVEFFHD--ECRCPVYVRDVVKIILALTNR 231
P+ S+ + + + + G + + F D + R VYV DVVK+ N
Sbjct: 170 PREQHKGGMASVAFHFNNQIKASGICRLFQGHDGFEDGKQLRDFVYVEDVVKV-----NL 224
Query: 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
WL ++ + + N G S +A V G
Sbjct: 225 WLWQNPGISGVYNCGTGQAQSFNDVANAVIAYHG 258
>sp|Q21Y60|HLDD_RHOFD ADP-L-glycero-D-manno-heptose-6-epimerase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=hldD PE=3 SV=1
Length = 340
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 120/295 (40%), Gaps = 57/295 (19%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDALPHSFVFFDVD 60
R++V G G++G +++QGL+ D+ L L + + VF+D+
Sbjct: 3 RIVVTGAAGFIGSNIIQGLNARGLNDIIAIDDLTQGDKFRNLAHLKISDYVDASVFYDL- 61
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+G+ +GQ + V + A S E++ M N +S VN + + +
Sbjct: 62 FANGA--------YGQIEAVFHEGACS--DTMESNGKYMMDNNYATS-VNLFQA-CQKRG 109
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAILRSSI---- 176
L++ S+ Y G +F ++ P+NVYG SK+ ++ + +C N R S+
Sbjct: 110 ARLLYASSAATYGGSDTFREDPAFERPLNVYGYSKLLFDQRMRRECGN--DFRRSVAGKT 167
Query: 177 ----------IYGP-QTISPVPKSLPIQWIDSVLSKGEKVEFFHD--------ECRCPVY 217
+YGP + S+ ++G KV+ F D + R ++
Sbjct: 168 GQVVGFRYFNVYGPHEQHKGRMASVAFHQFHQFQAEG-KVKLFADYGGYAAGAQMRDFIF 226
Query: 218 VRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ-----MAEVVAEIRGYS 267
+ DVV + N W + + + N+G R Q + VV +RG S
Sbjct: 227 IDDVVAV-----NLWFFDHPGVSGIFNLG----TGRAQPFNDVASSVVNALRGLS 272
>sp|Q58461|Y1061_METJA Uncharacterized membrane protein MJ1061 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1061 PE=3 SV=1
Length = 333
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 103/232 (44%), Gaps = 35/232 (15%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
K +LV GGTG +G+ +++ L + K V + T L +L + F D++
Sbjct: 12 KTILVTGGTGSIGKEIVKTLLKFNPKTIRVLDINE-TALFELEHELNSEKIRCFIGDVRD 70
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLL 123
D + + DVV + AAL +CE +P A+ NV + N + + +
Sbjct: 71 K---DRLKRAIEEVDVVFHAAALKHVPLCEYNPFEAVKTNVIGTQ-NLIEVAMDEEVEKF 126
Query: 124 IHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKF-----IY--EKCSNFAILR-SS 175
I +STD+ + PVNV G +K+ AE+ +Y ++ + F+++R +
Sbjct: 127 ITISTDKA-------------VNPVNVMGATKLLAERLTISANLYKGKRKTAFSVVRFGN 173
Query: 176 IIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIIL 226
++ +I P+ K + KG V H D R + + + VK++L
Sbjct: 174 VLNSRGSILPLLKEQ--------IKKGGPVTLTHPDMTRFIMSINEAVKLVL 217
>sp|Q07W60|HLDD_SHEFN ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
frigidimarina (strain NCIMB 400) GN=hldD PE=3 SV=1
Length = 317
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 119/275 (43%), Gaps = 33/275 (12%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVD----- 60
++V G G++G +L++ L+ + G+ D+ A T Q+ A + D D
Sbjct: 2 IVVTGAAGFIGSNLVKQLNAM-GRN-DIIAVDDLTDGTQMFNLADCEIADYLDKDDFIKQ 59
Query: 61 LKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKE 120
+K+G FD + +V+ + A S E D M+ N S L +++
Sbjct: 60 IKAGD-FD------NKLEVIFHQGACS--STTEWDGKFMMANNFEYSKT--LLHYSQANN 108
Query: 121 NLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEK--CSNFAILRSSIIY 178
I+ S+ VY G + F ++ + P+NVY SK ++++ ++ A LR +Y
Sbjct: 109 CQFIYASSASVYGGSEKFIEQRELEKPLNVYAYSKFLFDQYVRQQKLTGQVAGLRYFNVY 168
Query: 179 GPQTISPVP-KSLPIQWIDSVLSKG-----EKVEFFHD--ECRCPVYVRDVVKIILALTN 230
GP+ S+ + + + + G E V+ + + + R V+V DVVK+ N
Sbjct: 169 GPREQHKGGMASVAFHFNNQINTNGVCRLFEGVDGYENGQQLRDFVFVEDVVKV-----N 223
Query: 231 RWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
WL ++ + + N G S +A V G
Sbjct: 224 LWLWQNPSVSGIYNCGTGQAQSFNDVANAVIAYHG 258
>sp|P37761|RMLB_NEIGO dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3
SV=1
Length = 346
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 2 SKKRVLVVGGTGYLG----QHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFF 57
KK +LV GG G++G +H++Q + ++ ++ L L A + F
Sbjct: 5 GKKNILVTGGAGFIGSAVVRHIIQNTRD---SVVNLDKLTYAGNLESLTDIADNPRYAFE 61
Query: 58 DVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINV-------PSSLVN 110
VD+ + D V ++ +PD V++ AA S + N+ ++
Sbjct: 62 QVDICDRAELDRVFAQY-RPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAY 120
Query: 111 WLSSFTENKENLLI-HLSTDQVY---EGVKSFYKEEDEIAPVNVYGKSKVAAEKFI 162
W +E +E H+STD+VY G + E AP + Y SK AA+ +
Sbjct: 121 WQQMPSEKREAFRFHHISTDEVYGDLHGTDDLFTETTPYAPSSPYSASKAAADHLV 176
>sp|P53199|ERG26_YEAST Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ERG26 PE=1 SV=1
Length = 349
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 1 MSK-KRVLVVGGTGYLGQHLLQGLSEIEGKP----YDVAATHHSTPLPQLLLDALPHS-- 53
MSK VL++GG+G+LG HL+Q +I KP +DV LP+ L +
Sbjct: 1 MSKIDSVLIIGGSGFLGLHLIQQFFDINPKPDIHIFDV------RDLPEKLSKQFTFNVD 54
Query: 54 -FVFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWL 112
F DL S + A+ + +VVV+CA+ P +N PD +NV + N +
Sbjct: 55 DIKFHKGDLTSPDDMEN-AINESKANVVVHCAS---PMHGQN-PDIYDIVNVKGTR-NVI 108
Query: 113 SSFTENKENLLIHLSTDQVYEGVKSFYKEEDEI----APVNVYGKSKVAAEKFIY---EK 165
+ N+L++ S+ V + + ++ P++ Y ++K AE + +
Sbjct: 109 DMCKKCGVNILVYTSSAGVIFNGQDVHNADETWPIPEVPMDAYNETKAIAEDMVLKANDP 168
Query: 166 CSNF--AILRSSIIYGPQTISPVP 187
S+F LR + I+GP VP
Sbjct: 169 SSDFYTVALRPAGIFGPGDRQLVP 192
>sp|Q31FG4|HLDD_THICR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Thiomicrospira
crunogena (strain XCL-2) GN=hldD PE=3 SV=1
Length = 323
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 119/280 (42%), Gaps = 41/280 (14%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV------ 59
++V GG G++G ++++ L+ +G+ D+ L++D L + F ++
Sbjct: 2 IVVTGGAGFIGSNIVKALN-AQGRT-DI-----------LVVDNLKNGKKFINIADCDIA 48
Query: 60 DLKSGSGFDA-VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTEN 118
D F + + + G PD+ + E D M N S L ++ N
Sbjct: 49 DYLDKEDFQSRIFAEEGLPDIDCVFHEGACSATTEWDGKYMMDNNYEYS--KDLLNYCLN 106
Query: 119 KENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYE----KCSNFAILRS 174
++ ++ S+ VY +F +E P+NVYG SK ++++ S A R
Sbjct: 107 RKIPFLYASSAAVYGDGPTFIEERQYEKPLNVYGYSKFQFDQYVRRILPLAESQVAGFRY 166
Query: 175 SIIYGPQTISPVP-KSLPIQWIDSVLSKGEKVEFF--HD------ECRCPVYVRDVVKII 225
+YGP+ S+ + + VL+ GEK++ F +D + R V++ DVV +
Sbjct: 167 FNVYGPREQHKGDMASVAFKLHNQVLA-GEKLKLFGAYDGYEAGMQTRDFVFIEDVVNV- 224
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
N W E+ + + N+G +A+ V + G
Sbjct: 225 ----NLWFMENPEQSGIFNLGPAAAEPFKHIADAVIDFHG 260
>sp|A4SQW9|ARNA_AERS4 Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
salmonicida (strain A449) GN=arnA PE=3 SV=1
Length = 663
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 53/287 (18%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
RVL++G G++G HL + L ++ Y++ S +D FV D+ + +
Sbjct: 319 RVLILGVNGFIGNHLTERL--LKDGRYEIYGLDISASALGRFIDHPHFHFVEGDISIHT- 375
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + DV++ A++ P +P ++ +L NK +I
Sbjct: 376 ---EWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKR--II 430
Query: 125 HLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFAIL 172
ST +VY +EDE + P++ +Y SK ++ I+ ++ NF +
Sbjct: 431 FPSTSEVYGMCDDHSFDEDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLF 490
Query: 173 RSSIIYGP-----------------QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215
R GP Q I + PIQ +D K RC
Sbjct: 491 RPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQK-----------RCF 539
Query: 216 VYVRDVVKIILALT-NRWLSEDKQMQLLLNVGGPD-RVSRVQMAEVV 260
+ D ++ + + N+ D Q ++N+G PD S +QMAEV+
Sbjct: 540 TDIEDGIEALFRIIENKGNRCDGQ---IINIGSPDNEASILQMAEVL 583
>sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GAL10 PE=1 SV=2
Length = 699
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 2 SKKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVA-------ATHHSTPLPQLLLDALPHSF 54
+ K VLV GG GY+G H + L E YD +T+ S ++L H
Sbjct: 10 TSKIVLVTGGAGYIGSHTVVELIE---NGYDCVVADNLSNSTYDSVARLEVLTK---HHI 63
Query: 55 VFFDVDLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSS 114
F++VDL G + V ++ + D V++ A L P N+ ++V L
Sbjct: 64 PFYEVDLCDRKGLEKVFKEY-KIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVV-LLEL 121
Query: 115 FTENKENLLIHLSTDQVYEGVKSF-----YKEEDEIAPVNVYGKSKVAAEKFIYE----- 164
+ + + S+ VY F EE + P N YG +K A E + +
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD 181
Query: 165 -KCSNFAILRSSIIYGPQTISP----------VPKSLPIQWIDSVLSKGEKVEFFHD--E 211
K FAILR + P P +P +L + + EK+ F D +
Sbjct: 182 KKSWKFAILR---YFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYD 238
Query: 212 CRCPVYVRDVVKII 225
R +RD + ++
Sbjct: 239 SRDGTPIRDYIHVV 252
>sp|Q56623|GALE_VIBCL UDP-glucose 4-epimerase OS=Vibrio cholerae GN=galE PE=3 SV=1
Length = 328
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 44/197 (22%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDV-DLK 62
K +L+ G TG++G +L++ L+ ++ +A H+ LL F+V D+
Sbjct: 10 KSILLTGSTGFVGTNLVKSLT-LKSDYIVKSAVRHAVNKDDGLL---------FEVGDIN 59
Query: 63 SGSGFDAVALKFGQPDVVVNCAALS--------VPRVCENDPDSAMSINVPSSLVN---- 110
+ + F+ L VVV+CAA + P + ++A ++N+ ++
Sbjct: 60 ASTDFE---LPLKNTTVVVHCAARAHVMDDKEAEPLTLYREVNTAGTVNLAKQAIDSGVK 116
Query: 111 ---WLSSFTENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEK----FIY 163
++SS N E L+ +K ED AP + YG SK AEK
Sbjct: 117 RFIFISSIKVNGEGTLVGCP-----------FKTEDNHAPEDDYGLSKSEAEKQLVALAK 165
Query: 164 EKCSNFAILRSSIIYGP 180
+ I+R +I+YGP
Sbjct: 166 DSSMEVVIIRPTIVYGP 182
>sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1
Length = 334
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 19/246 (7%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPY----DVAATHHSTPLPQLLLDAL-PHSFVFFDV 59
++L+ G G++G HL + L I+ Y D ++S L + L ++ +F F V
Sbjct: 2 KILITGTAGFIGSHLAKKL--IKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKV 59
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
L++ V + QP+VVVN AA + R +P + + N+ + S N
Sbjct: 60 KLENYDDLSKVFVD-EQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNI 118
Query: 120 ENLLIHLSTDQVY--EGVKSFYKEEDEIAPVNVYGKSKVAAE--KFIYEKCSNFAI--LR 173
+N LI+ S+ VY K F ++ P+++Y +K + E Y N LR
Sbjct: 119 QN-LIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLR 177
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH-DECRCPVYVRDVVKIILALTNRW 232
+YGP P ++ ++++ + H + R YV D+V+ I L +
Sbjct: 178 FFTVYGPWG---RPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIVEAISRLVKKP 234
Query: 233 LSEDKQ 238
S +K+
Sbjct: 235 ASPNKE 240
>sp|A5UIN9|HLDD_HAEIG ADP-L-glycero-D-manno-heptose-6-epimerase OS=Haemophilus influenzae
(strain PittGG) GN=hldD PE=3 SV=1
Length = 308
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 39/276 (14%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSG 64
++V GG G++G ++++ L+++ K D+ L++D L F + VDL
Sbjct: 2 IIVTGGAGFIGSNIVKALNDLGRK--DI-----------LVVDNLKDGTKFANLVDLDIA 48
Query: 65 SGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D +FG D V + A S E D M N S L +
Sbjct: 49 DYCDKEDFIASIIAGDEFGDIDAVFHEGACSA--TTEWDGKYIMHNNYEYS--KELLHYC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY----EKCSNFAIL 172
++E + S+ Y K F +E + P+NVYG SK ++++ E S
Sbjct: 105 LDREIPFFYASSAATYGDTKVFREEREFEGPLNVYGYSKFLFDQYVRNILPEAKSPVCGF 164
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE---CRCPVYVRDVVKIILALT 229
R +YGP+ + +++ + KGE + F R VYV DV A
Sbjct: 165 RYFNVYGPRENHKGSMASVAFHLNNQILKGENPKLFAGSEGFRRDFVYVGDV-----AAV 219
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
N W ++ + + N+G + S +A+ V + G
Sbjct: 220 NIWCWQN-GISGIYNLGTGNAESFRAVADAVVKFHG 254
>sp|Q4QLI0|HLDD_HAEI8 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Haemophilus influenzae
(strain 86-028NP) GN=hldD PE=3 SV=1
Length = 308
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 39/276 (14%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSG 64
++V GG G++G ++++ L+++ K D+ L++D L F + VDL
Sbjct: 2 IIVTGGAGFIGSNIVKALNDLGRK--DI-----------LVVDNLKDGTKFANLVDLDIA 48
Query: 65 SGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D +FG D V + A S E D M N S L +
Sbjct: 49 DYCDKEDFIASIIAGDEFGDIDAVFHEGACSA--TTEWDGKYIMHNNYEYS--KELLHYC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY----EKCSNFAIL 172
++E + S+ Y K F +E + P+NVYG SK ++++ E S
Sbjct: 105 LDREIPFFYASSAATYGDTKVFREEREFEGPLNVYGYSKFLFDQYVRNILPEAKSPVCGF 164
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE---CRCPVYVRDVVKIILALT 229
R +YGP+ + +++ + KGE + F R VYV DV A
Sbjct: 165 RYFNVYGPRENHKGSMASVAFHLNNQILKGENPKLFAGSEGFRRDFVYVGDV-----AAV 219
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
N W ++ + + N+G + S +A+ V + G
Sbjct: 220 NIWCWQN-GISGIYNLGTGNAESFRAVADAVVKFHG 254
>sp|P45048|HLDD_HAEIN ADP-L-glycero-D-manno-heptose-6-epimerase OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hldD PE=3
SV=1
Length = 308
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 112/276 (40%), Gaps = 39/276 (14%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSG 64
++V GG G++G ++++ L+++ K D+ L++D L F + VDL
Sbjct: 2 IIVTGGAGFIGSNIVKALNDLGRK--DI-----------LVVDNLKDGTKFANLVDLDIA 48
Query: 65 SGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D +FG D V + A S E D M N S L +
Sbjct: 49 DYCDKEDFIASIIAGDEFGDIDAVFHEGACSA--TTEWDGKYIMHNNYEYS--KELLHYC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY----EKCSNFAIL 172
++E + S+ Y K F +E + P+NVYG SK ++++ E S
Sbjct: 105 LDREIPFFYASSAATYGDTKVFREEREFEGPLNVYGYSKFLFDQYVRNILPEAKSPVCGF 164
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE---CRCPVYVRDVVKIILALT 229
R +YGP+ + +++ + KGE + F R VYV DV A
Sbjct: 165 RYFNVYGPRENHKGSMASVAFHLNNQILKGENPKLFAGSEHFRRDFVYVGDV-----AAV 219
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
N W ++ + + N+G + S +A+ V + G
Sbjct: 220 NIWCWQNG-ISGIYNLGTGNAESFRAVADAVVKFHG 254
>sp|A0KGY6|ARNA_AERHH Bifunctional polymyxin resistance protein ArnA OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=arnA PE=3 SV=1
Length = 663
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 51/286 (17%)
Query: 5 RVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKSG 64
RVL++G G++G HL + L + G Y+V + + FV D+ + +
Sbjct: 319 RVLILGVNGFIGNHLTERLLQDGG--YEVYGLDIGSSAVDRFIGHPNFHFVEGDISIHT- 375
Query: 65 SGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENLLI 124
+ + + DV++ A++ P +P ++ +L + + +I
Sbjct: 376 ---EWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLK--IVRYCVKYHKRII 430
Query: 125 HLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY----EKCSNFAIL 172
ST +VY +ED + P+N +Y SK ++ I+ ++ NF +
Sbjct: 431 FPSTSEVYGMCDDHSFDEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLF 490
Query: 173 RSSIIYGP-----------------QTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCP 215
R GP Q I + PIQ +D K RC
Sbjct: 491 RPFNWMGPRLDSLDSARIGSSRAITQLILNLVDGTPIQLVDGGAQK-----------RCF 539
Query: 216 VYVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRV-QMAEVV 260
+ D ++ + + E++ ++N+G PD + + QMAE++
Sbjct: 540 TDIEDGIEALFRIIEN--KENRCDGQIINIGNPDNEASIQQMAEIL 583
>sp|Q5QKR8|PSEB_CAMJJ UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
(strain 81-176) GN=pseB PE=3 SV=1
Length = 334
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 4 KRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHS--FVFFDVDL 61
K +L+ GGTG G+ + L E KP + + L Q + ++ +S +F D+
Sbjct: 5 KNILITGGTGSFGKTYTKVLLE-NYKPNKII-IYSRDELKQFEMSSIFNSNCMRYFIGDV 62
Query: 62 KSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKEN 121
+ +VA++ D V++ AA+ V E +P + N+ + N + + EN
Sbjct: 63 RDKERL-SVAMR--DVDFVIHAAAMKHVPVAEYNPMECIKTNIHGAQ-NVIDACFENGVK 118
Query: 122 LLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIY-------EKCSNFAILRS 174
I LSTD+ PVN+YG +K+A++K K + F++ R
Sbjct: 119 KCIALSTDKA-------------CNPVNLYGATKLASDKLFVAANNIAGNKQTRFSVTRY 165
Query: 175 SIIYGPQ-TISPVPKSLPIQ 193
+ G + ++ P K L Q
Sbjct: 166 GNVVGSRGSVVPFFKKLIAQ 185
>sp|Q3KCC1|ARNA_PSEPF Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1
Length = 668
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 113/274 (41%), Gaps = 28/274 (10%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + + Y+V + L FV D+ +
Sbjct: 318 RTRVLILGVNGFIGNHLSERL--LRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIH 375
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L L +
Sbjct: 376 S----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK--LVRYCVKYNKR 429
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY---EKCSNFAI 171
+I ST +VY + + +ED + P+N +Y SK ++ I+ K NF +
Sbjct: 430 VIFPSTSEVYGMCQDKHFDEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTL 489
Query: 172 LRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKII 225
R GP+ + + S I + L +G + F ++ RC + D V+ +
Sbjct: 490 FRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGVEAL 549
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRV-QMAE 258
+ + D ++N+G PD + + Q+ E
Sbjct: 550 ARIIDN--DNDVCNGQIINIGNPDNEASIRQLGE 581
>sp|A6VLD2|HLDD_ACTSZ ADP-L-glycero-D-manno-heptose-6-epimerase OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=hldD PE=3
SV=1
Length = 308
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 109/276 (39%), Gaps = 39/276 (14%)
Query: 6 VLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFD-VDLKSG 64
++V GG G++G ++++ L+++ K D+ L++D L F + VDL
Sbjct: 2 IIVTGGAGFIGSNIVKSLNDLGRK--DI-----------LVVDNLKDGTKFINLVDLDIA 48
Query: 65 SGFDA--------VALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFT 116
D FG D V + A S E D M N S L +
Sbjct: 49 DYCDKEDFIAQIIAGDDFGDIDAVFHEGACSA--TTEWDGKYIMHNNYEYS--KELLHYC 104
Query: 117 ENKENLLIHLSTDQVYEGVKSFYKEEDEIAPVNVYGKSKVAAEKFIYEKCSNFAI----L 172
++E + S+ Y F +E P+NVYG SK ++++ E N +
Sbjct: 105 LDREIPFFYASSAATYGDKTEFVEERQFEGPLNVYGYSKFLFDQYVREILPNASSPVCGF 164
Query: 173 RSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDE---CRCPVYVRDVVKIILALT 229
+ +YGP+ S +++ + KGE + F R VYV DV A
Sbjct: 165 KYFNVYGPREQHKGSMSSVAFHLNNQILKGENPKLFAGSEHFLRDFVYVGDV-----AAV 219
Query: 230 NRWLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRG 265
N W ++K + + N G S +AE V + G
Sbjct: 220 NIWAWQNK-ISGIFNCGTGHAESFKAVAEAVIKHHG 254
>sp|P55293|RMLB_ECOLX dTDP-glucose 4,6-dehydratase OS=Escherichia coli GN=rfbB PE=1 SV=1
Length = 361
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 55/348 (15%)
Query: 5 RVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQL--LLDALPHSFVFFDVDL 61
++LV GG G++G +++ ++ + +V ++ L L + D+ +SF D+
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLAEISDSERYSFENADICD 61
Query: 62 KSGSGFDAVALKFGQP--DVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLS 113
G G L FGQ D V++ AA S P + + N+ + V N+ S
Sbjct: 62 AEGDG-----LYFGQHQLDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWS 116
Query: 114 SF-TENKENLLI-HLSTDQVY------EGVKS-----FYKEEDEIAPVNVYGKSKVAAEK 160
E K+N H+STD+VY + V S + E AP + Y SK +++
Sbjct: 117 GLDDEKKKNFRFHHISTDEVYGDLPHPDEVNSNETLQLFTETTAYAPSSPYSASKASSDH 176
Query: 161 FIYEKCSNFA----ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216
+ + + S YGP K +P+ ++++ K + D+ R +
Sbjct: 177 LVRAWKRTYGLPTIVSNCSNNYGPYHFP--EKLIPLVILNALEGKALPIYGKGDQIRDWL 234
Query: 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ--------MAEVVAEIRGYST 268
YV D + + + ++E K + N+GG + + + E+V + + Y
Sbjct: 235 YVEDHARALYTV----VTEGKAGE-TYNIGGHNEKKNIDVVFTICDLLDEIVPKEKSYRE 289
Query: 269 SLIKPVSASSVDRGVQSPADISMDITKLVQTLNIDPV-TYKDGVKLTL 315
+ DR ++D K+ + L P T++ G++ T+
Sbjct: 290 QITYVADRPGHDR------RYAIDADKISRELGWKPQETFESGIRKTV 331
>sp|P37759|RMLB1_ECOLI dTDP-glucose 4,6-dehydratase 1 OS=Escherichia coli (strain K12)
GN=rfbB PE=3 SV=2
Length = 361
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 66/344 (19%), Positives = 137/344 (39%), Gaps = 47/344 (13%)
Query: 5 RVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
++LV GG G++G +++ ++ + +V ++ L + +VF D+
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLADVSDSERYVFEHADICD 61
Query: 64 GSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLSSFTE 117
+ + QPD V++ AA S P + + N+ + V N+ S+
Sbjct: 62 APAMARIFAQH-QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDS 120
Query: 118 NKEN--LLIHLSTDQVYEGVKS-----------FYKEEDEIAPVNVYGKSKVAAEKFIYE 164
+K+N H+STD+VY + + E AP + Y SK +++ +
Sbjct: 121 DKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 165 KCSNFA----ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPVYVRD 220
+ + S YGP K +P+ ++++ K + D+ R +YV D
Sbjct: 181 WKRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKALPIYGKGDQIRDWLYVED 238
Query: 221 VVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ--------MAEVVAEIRGYSTSLIK 272
+ + + ++E K + N+GG + + + E+V + + Y +
Sbjct: 239 HARALYTV----VTEGKAGE-TYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITY 293
Query: 273 PVSASSVDRGVQSPADISMDITKLVQTLNIDPV-TYKDGVKLTL 315
DR ++D K+ + L P T++ G++ T+
Sbjct: 294 VADRPGHDR------RYAIDAEKIGRALGWKPQETFESGIRKTV 331
>sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia
coli O111:H- PE=3 SV=1
Length = 334
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 132/339 (38%), Gaps = 49/339 (14%)
Query: 5 RVLVVGGTGYLGQH----LLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPH-SFVFFDV 59
+ LV G G++G H LL+ ++ G D ++ L Q L+ L F F +
Sbjct: 2 KYLVTGAAGFIGFHVSKRLLEAGHQVVG--IDNLNDYYDVSLKQARLELLAQPGFQFHKI 59
Query: 60 DLKSGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENK 119
DL G + V ++ L+V EN P + N+ + +N L NK
Sbjct: 60 DLADREGMTDLFASGHFERVFISPHRLAVRYSLEN-PHAYADSNL-TGFLNILEGCRHNK 117
Query: 120 ENLLIHLSTDQVYE-GVKSFYKEEDEI-APVNVYGKSKVAAEKFIYEKCSNFAI----LR 173
L++ S+ VY K + +D + PV++Y +K A E + + + LR
Sbjct: 118 IQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLR 177
Query: 174 SSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKIILALTNR 231
+YGP P ++ ++L +G+ ++ ++ R Y+ D+ + I+ L +
Sbjct: 178 FFTVYGPWG---RPDMALFKFTKAML-EGKSIDVYNYGKMKRDFTYIDDIAEAIIRLQDV 233
Query: 232 WLSEDKQMQLLLNVGGPDRVSRVQMAEVVAEIRGYSTSLIKPVSASSVDRGVQ------- 284
D Q + G P A +A R Y+ PV + ++
Sbjct: 234 IPHADTQWT--VETGTP--------AASIAPYRVYNIGNSSPVELMDYIQALEDALGIEA 283
Query: 285 -------SPADI---SMDITKLVQTLNIDP-VTYKDGVK 312
P D+ S D L + + P T KDGVK
Sbjct: 284 KKNMLPLQPGDVLETSADTKALYEVIGFTPETTVKDGVK 322
>sp|Q4KC82|ARNA_PSEF5 Bifunctional polymyxin resistance protein ArnA OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3
SV=1
Length = 668
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 112/274 (40%), Gaps = 28/274 (10%)
Query: 3 KKRVLVVGGTGYLGQHLLQGLSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLK 62
+ RVL++G G++G HL + L + YDV + + L FV D+ +
Sbjct: 318 RTRVLILGVNGFIGNHLSERL--LRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIH 375
Query: 63 SGSGFDAVALKFGQPDVVVNCAALSVPRVCENDPDSAMSINVPSSLVNWLSSFTENKENL 122
S + + + DVV+ A++ P +P ++ +L L +
Sbjct: 376 S----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK--LVRYCVKYNKR 429
Query: 123 LIHLSTDQVYEGVKSFYKEEDE----IAPVN----VYGKSKVAAEKFIY---EKCSNFAI 171
+I ST +VY + +ED + P+N +Y SK ++ I+ K NF +
Sbjct: 430 VIFPSTSEVYGMCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAKGLNFTL 489
Query: 172 LRSSIIYGPQ----TISPVPKSLPIQWIDSVLSKGEKVEFFH--DECRCPVYVRDVVKII 225
R GP+ + + S I + L +G + F ++ RC + D ++ +
Sbjct: 490 FRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKRCFTDIADGIEAL 549
Query: 226 LALTNRWLSEDKQMQLLLNVGGPDRVSRV-QMAE 258
+ + D ++N+G PD + + Q+ E
Sbjct: 550 ARIVDN--ENDCCNGQIINIGNPDNEASIRQLGE 581
>sp|P37777|RMLB_SHIFL dTDP-glucose 4,6-dehydratase OS=Shigella flexneri GN=rfbB PE=3 SV=2
Length = 361
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 70/348 (20%), Positives = 140/348 (40%), Gaps = 55/348 (15%)
Query: 5 RVLVVGGTGYLGQHLLQG-LSEIEGKPYDVAATHHSTPLPQLLLDALPHSFVFFDVDLKS 63
++LV GG G++G +++ ++ + +V ++ L L + + F D+
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYAFEHADI-- 59
Query: 64 GSGFDAVALK--FG--QPDVVVNCAALSVPRVCENDPDSAMSINVPSSLV------NWLS 113
DAVA+ F QPD V++ AA S P + + N+ + V N+ S
Sbjct: 60 ---CDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWS 116
Query: 114 SFTENKEN--LLIHLSTDQVYEGVKS-----------FYKEEDEIAPVNVYGKSKVAAEK 160
+ + K+ H+STD+VY + + E AP + Y SK +++
Sbjct: 117 ALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTAYAPSSPYSASKASSDH 176
Query: 161 FIYEKCSNFA----ILRSSIIYGPQTISPVPKSLPIQWIDSVLSKGEKVEFFHDECRCPV 216
+ + + S YGP K +P+ ++++ K + D+ R +
Sbjct: 177 LVRAWKRTYGLPTIVTNCSNNYGPYHFP--EKLIPLVILNALEGKALPIYGKGDQIRDWL 234
Query: 217 YVRDVVKIILALTNRWLSEDKQMQLLLNVGGPDRVSRVQ--------MAEVVAEIRGYST 268
YV D + + + ++E K + N+GG + + + E+V + + Y
Sbjct: 235 YVEDHARALYTV----VTEGKAGE-TYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYRE 289
Query: 269 SLIKPVSASSVDRGVQSPADISMDITKLVQTLNIDPV-TYKDGVKLTL 315
+ DR ++D K+ + L P T++ G++ T+
Sbjct: 290 QITYVADRPGHDR------RYAIDADKISRELGWKPQETFESGIRKTV 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,440,851
Number of Sequences: 539616
Number of extensions: 4912262
Number of successful extensions: 13830
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 219
Number of HSP's that attempted gapping in prelim test: 13710
Number of HSP's gapped (non-prelim): 299
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)