BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020881
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 91/239 (38%), Gaps = 26/239 (10%)
Query: 34 IGGMLSAGTTHLVTTPLDVLKVNMQVN-----------PLKYYGMSSGFSTLWKEQGSSS 82
+G +A L+T PLD KV +Q+ +Y G+ T+ + +G S
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 83 LWKGWSAKFCGYGVQGGCKFGLYEYFKSLYPDILVDYNRTFIFFLSSASAQVFADIALCP 142
L+ G A + GLY+ K Y ++ L+ ++ A P
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-SEHAGIGSRLLAGSTTGALAVAVAQP 124
Query: 143 FESVKVRVQAQPHFAKGLS-----DGFPKVYKTEGLAGFYRGLFPLWCRNLPFSMIMFST 197
+ VKVR QAQ G + + + + EG+ G ++G P RN + T
Sbjct: 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 198 FEHSVDFIYQKLVQKRKEDCSRVQQLGVTCLAGYTAGAVGTLISNPADNIVASLYNKKA 256
++ D + + + C G AG T+I++P D +V + Y A
Sbjct: 185 YDLIKDTLLKANLMTDDLPCHFTSAFG--------AGFCTTVIASPVD-VVKTRYMNSA 234
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 73/183 (39%), Gaps = 21/183 (11%)
Query: 34 IGGMLSAGTTH-----LVTTPLDVLKVNMQVNPL-----KYYGMSSGFSTLWKEQGSSSL 83
IG L AG+T V P DV+KV Q +Y + T+ +E+G L
Sbjct: 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 84 WKGWSAKFCGYGVQGGCKFGLYEYFKS--LYPDILVDYNRTFIFFLSSASAQVFADIALC 141
WKG S + + Y+ K L +++ D F S+ A +
Sbjct: 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD--DLPCHFTSAFGAGFCTTVIAS 221
Query: 142 PFESVKVRVQ----AQPHFAKGLSDGFPKVYKTEGLAGFYRGLFPLWCRNLPFSMIMFST 197
P + VK R Q H A + + + EG FY+G P + R ++++MF T
Sbjct: 222 PVDVVKTRYMNSALGQYHSAGHCA---LTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 198 FEH 200
+E
Sbjct: 279 YEQ 281
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 124 IFFLSSASAQVFADIALCPFESVKVRVQAQPHFA-----------KGLSDGFPKVYKTEG 172
+ FL + +A AD+ P ++ KVR+Q Q +G+ + +TEG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 173 LAGFYRGLFPLWCRNLPFSMIMFSTFEHSVDFIYQKLVQKRKEDCSRVQQLGVTCLAGYT 232
Y GL R + F+ + ++ SV Y K S +G LAG T
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYD-SVKQFYTK--------GSEHAGIGSRLLAGST 113
Query: 233 AGAVGTLISNPADNI 247
GA+ ++ P D +
Sbjct: 114 TGALAVAVAQPTDVV 128
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 43 THLVTTPLDVLKVNMQVNPL-KYYGMSSGFSTLWKEQGSSSLWKGWSAKFCGYGVQGGCK 101
T ++ +P+DV+K + L +Y+ T+ +++G + +KG+ F G
Sbjct: 216 TTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVM 275
Query: 102 FGLYEYFK 109
F YE K
Sbjct: 276 FVTYEQLK 283
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 22/167 (13%)
Query: 34 IGGMLSAGTTHLVTTPLDVLKVNMQVN--------PLKYYGMSSGFSTLWKEQGSSSLWK 85
+ G ++A + P++ +K+ +QV +Y G+ + KEQG S W+
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 86 GWSAKFCGYGVQGGCKFGLYEYFKSLYPDILVDYNRTFIFFLSS--ASAQVFADIALC-- 141
G A Y F + +K ++ VD ++ F + + AS +LC
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIFLG-GVDRHKQFWRYFAGNLASGGAAGATSLCFV 130
Query: 142 -PFESVKVRV-------QAQPHFAKGLSDGFPKVYKTEGLAGFYRGL 180
P + + R+ AQ F GL + K++K++GL G Y+G
Sbjct: 131 YPLDFARTRLAADVGKGAAQREFT-GLGNCITKIFKSDGLRGLYQGF 176
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 28 YYAICTIGGMLSAGTTHLVTTPLDVLKVNMQVNPLK------YYGMSSGFSTLWKEQGSS 81
Y+A G + T+ PLD + + + K + G+ + + ++K G
Sbjct: 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLR 170
Query: 82 SLWKGWSAKFCGYGVQGGCKFGLYEYFKSLYPDILVDYNRTFIFFLSSASAQVFADIALC 141
L++G++ G + FG+Y+ K + PD + ++ + + A +
Sbjct: 171 GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--PKNVHIIVSWMIAQTVTAVAGLVSY 228
Query: 142 PFESVKVRVQAQPH------FAKGLSDGFPKVYKTEGLAGFYRGLFPLWCRNL--PFSMI 193
PF++V+ R+ Q G D + K+ K EG F++G + R + F ++
Sbjct: 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLV 288
Query: 194 MFSTFEHSV 202
++ + V
Sbjct: 289 LYDEIKKFV 297
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 126 FLSSASAQVFADIALCPFESVKVRVQAQPHFA---------KGLSDGFPKVYKTEGLAGF 176
FL+ A + A+ P E VK+ +Q Q H + KG+ D ++ K +G F
Sbjct: 11 FLAGGVAAAISKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 177 YRGLFPLWCRNLPFSMIMFSTFEHSVDFIYQKLVQKRKE 215
+RG R P + F+ F+ I+ V + K+
Sbjct: 70 WRGNLANVIRYFPTQALNFA-FKDKYKQIFLGGVDRHKQ 107
>pdb|3OPY|I Chain I, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|J Chain J, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|K Chain K, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|L Chain L, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 351
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 243 PADNIVASLYNKKAENVLQAVKKIGFLNLFTRSLPVRITIVGPVVTLQWFLYDSIKVL 300
P D ++ + YN NVL+ V ++G F+R L + + + WF+ D I L
Sbjct: 66 PVDKLLTNYYNNYEVNVLEFVLQMG----FSRDLSIPLNV--------WFVLDMISQL 111
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 245 DNIVASLYNKKAENVLQAVKKIGFLNL 271
D ASL N EN L+A+K++GF N+
Sbjct: 51 DTSFASLCNLVNENTLKAIKEMGFTNM 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,107,988
Number of Sequences: 62578
Number of extensions: 358903
Number of successful extensions: 968
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 9
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)