Query 020881
Match_columns 320
No_of_seqs 157 out of 1647
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 09:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.3E-54 7.8E-59 384.8 23.3 262 32-303 4-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 4.9E-53 1.7E-57 375.3 25.7 262 28-301 6-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 5.9E-35 2E-39 259.6 16.5 182 27-208 102-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 2.4E-33 8.1E-38 248.6 19.3 174 28-204 111-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 35.9 33 0.0011 23.0 3.1 35 266-301 32-66 (81)
6 3f2e_A SIRV coat protein; four 33.6 16 0.00055 24.0 1.2 39 150-188 1-43 (100)
7 1pp9_G Ubiquinol-cytochrome C 32.7 45 0.0015 22.3 3.4 35 266-301 32-66 (81)
8 3vjj_A P9-1; 3.00A {Rice black 18.7 99 0.0034 25.9 3.6 37 132-172 271-307 (368)
9 3vjj_A P9-1; 3.00A {Rice black 15.9 94 0.0032 26.0 2.8 34 235-268 273-308 (368)
10 3cx5_H Cytochrome B-C1 complex 15.3 65 0.0022 22.2 1.5 34 266-300 42-75 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-54 Score=384.80 Aligned_cols=262 Identities=21% Similarity=0.299 Sum_probs=237.3
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHHHHHcCCC-----------CCCCHHHHHHHHHhhhchhhhccchhHHHhhHhhhhhH
Q 020881 32 CTIGGMLSAGTTHLVTTPLDVLKVNMQVNPL-----------KYYGMSSGFSTLWKEQGSSSLWKGWSAKFCGYGVQGGC 100 (320)
Q Consensus 32 ~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 100 (320)
.+++|++|++++.+++||||++|+|+|++.. .+++.++++++++++||++|||||+.+++++.+++.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999999999743 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcchhhccccchHHHHHHHHHHHHHhhhhcCcHHHHHHHHHhCcC-----CCCChhhHHHHHHHhhCccc
Q 020881 101 KFGLYEYFKSLYPDILVDYNRTFIFFLSSASAQVFADIALCPFESVKVRVQAQPH-----FAKGLSDGFPKVYKTEGLAG 175 (320)
Q Consensus 101 ~f~~~~~l~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~iktr~q~~~~-----~~~~~~~~~~~i~~~~G~~g 175 (320)
+|++||.+++.+.+.. +..+....+++|++||+++.++++|+|++|+|+|++.. .|.+.++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999876531 24567788999999999999999999999999999853 68999999999999999999
Q ss_pred cccchHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhHHHHHHHHHHHHHHHhhcCcHHHHHHHHhccc
Q 020881 176 FYRGLFPLWCRNLPFSMIMFSTFEHSVDFIYQKLVQKRKEDCSRVQQLGVTCLAGYTAGAVGTLISNPADNIVASLYNKK 255 (320)
Q Consensus 176 lyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~Pldvv~tr~q~~~ 255 (320)
||||+.+++++.++..+++|.+||.+++.+.+.. ....+....+++|++||++++++++|+||||+|||.+.
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~ 234 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA 234 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc
Confidence 9999999999999999999999999998764321 01123456899999999999999999999999999864
Q ss_pred -------hhHHHHHHHhhchHHHhhcCchhHHHHhhhhHHHHHHHHHHHHHHcCC
Q 020881 256 -------AENVLQAVKKIGFLNLFTRSLPVRITIVGPVVTLQWFLYDSIKVLNGL 303 (320)
Q Consensus 256 -------~~~~~~i~~~eG~~~ly~~G~~~~~~~~~~~~~i~~~~~e~~~~~l~~ 303 (320)
++|+++++++||++|||| |+.|+++|.+|.++++|.+||.+++.+..
T Consensus 235 ~~~y~~~~~~~~~i~~~eG~~glyr-G~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 235 LGQYHSAGHCALTMLRKEGPRAFYK-GFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SSSCCSHHHHHHHHHHSSCTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccccCCHHHHHHHHHHHcChHHhhc-cHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999 99999999999999999999999988754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.9e-53 Score=375.28 Aligned_cols=262 Identities=19% Similarity=0.253 Sum_probs=227.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhchHHHHHHHHHcCC--------CCCCCHHHHHHHHHhhhchhhhccchhHHHhhHhhhhh
Q 020881 28 YYAICTIGGMLSAGTTHLVTTPLDVLKVNMQVNP--------LKYYGMSSGFSTLWKEQGSSSLWKGWSAKFCGYGVQGG 99 (320)
Q Consensus 28 ~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~--------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 99 (320)
.++..+++|++|++++.+++||+|++|+|+|++. ..|++.++++++++++||++|||||+.+++++.++.++
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 4677899999999999999999999999999974 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhccc----cchHHHHHHHHHHHHHhhhhcCcHHHHHHHHHhCc------CCCCChhhHHHHHHH
Q 020881 100 CKFGLYEYFKSLYPDILVDY----NRTFIFFLSSASAQVFADIALCPFESVKVRVQAQP------HFAKGLSDGFPKVYK 169 (320)
Q Consensus 100 ~~f~~~~~l~~~~~~~~~~~----~~~~~~~~~g~~a~~~~~~i~~P~d~iktr~q~~~------~~~~~~~~~~~~i~~ 169 (320)
++|++||.+++.+....... ......+++|++||+++.++++|+|++|+|+|++. ..|++.++++++|++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 99999999999543221111 12456789999999999999999999999999973 358999999999999
Q ss_pred hhCccccccchHHHHHhHhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhHHHHHHHHHHHHHHHhhcCcHHHHHH
Q 020881 170 TEGLAGFYRGLFPLWCRNLPFSMIMFSTFEHSVDFIYQKLVQKRKEDCSRVQQLGVTCLAGYTAGAVGTLISNPADNIVA 249 (320)
Q Consensus 170 ~~G~~glyrG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~Pldvv~t 249 (320)
+||++|||||+.+++++.+++.+++|.+||.+++.+.+. + ..+....+++|+++|++++++++|+||||+
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~------~----~~~~~~~~~~g~~ag~~a~~~t~P~dvvkt 235 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP------K----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRR 235 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG------G----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC------C----CccHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 999999999999999999999999999999999865211 1 123456789999999999999999999999
Q ss_pred HHhccc------------hhHHHHHHHhhchHHHhhcCchhHHHHhhhhHHHHHHHHHHHHHHc
Q 020881 250 SLYNKK------------AENVLQAVKKIGFLNLFTRSLPVRITIVGPVVTLQWFLYDSIKVLN 301 (320)
Q Consensus 250 r~q~~~------------~~~~~~i~~~eG~~~ly~~G~~~~~~~~~~~~~i~~~~~e~~~~~l 301 (320)
|||.+. +||+++++++||++|||| |+.|+++|. +.++++|.+||.+++.+
T Consensus 236 r~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyr-G~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 236 RMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFK-GAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGT-THHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEec-chHHHHHhh-ccceeeehHHHHHHhhC
Confidence 999752 689999999999999999 999999995 57899999999988753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.9e-35 Score=259.59 Aligned_cols=182 Identities=20% Similarity=0.314 Sum_probs=165.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhhchHHHHHHHHHcCCC-----CCCCHHHHHHHHHhhhchhhhccchhHHHhhHhhhhhHH
Q 020881 27 GYYAICTIGGMLSAGTTHLVTTPLDVLKVNMQVNPL-----KYYGMSSGFSTLWKEQGSSSLWKGWSAKFCGYGVQGGCK 101 (320)
Q Consensus 27 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~-----~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 101 (320)
......+++|++|++++.++++|+|++|+|+|++.. .+++.++++++|+++||++|||||+.+.+++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999753 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhccccchHHHHHHHHHHHHHhhhhcCcHHHHHHHHHhCc-CCCCChhhHHHHHHHhhCccccccch
Q 020881 102 FGLYEYFKSLYPDILVDYNRTFIFFLSSASAQVFADIALCPFESVKVRVQAQP-HFAKGLSDGFPKVYKTEGLAGFYRGL 180 (320)
Q Consensus 102 f~~~~~l~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~iktr~q~~~-~~~~~~~~~~~~i~~~~G~~glyrG~ 180 (320)
|.+||.+++.+.+...........+++|++||+++.++++|+|++|+|+|++. ..|.+.++++++|+++||++|||||+
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 261 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGF 261 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccH
Confidence 99999999988654333456677899999999999999999999999999985 46899999999999999999999999
Q ss_pred HHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 020881 181 FPLWCRNLPFSMIMFSTFEHSVDFIYQK 208 (320)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (320)
.|++++.+|..+++|.+||.+++.+.+.
T Consensus 262 ~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 262 MPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876544
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.4e-33 Score=248.59 Aligned_cols=174 Identities=20% Similarity=0.398 Sum_probs=155.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhchHHHHHHHHHcCC------CCCCCHHHHHHHHHhhhchhhhccchhHHHhhHhhhhhHH
Q 020881 28 YYAICTIGGMLSAGTTHLVTTPLDVLKVNMQVNP------LKYYGMSSGFSTLWKEQGSSSLWKGWSAKFCGYGVQGGCK 101 (320)
Q Consensus 28 ~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~ 101 (320)
.+...+++|++|++++.++++|+|++|+|+|++. ..|++.++++++++++||++|||||+.+++++.++..+++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999974 3578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhccccchHHHHHHHHHHHHHhhhhcCcHHHHHHHHHhCc------CCCCChhhHHHHHHHhhCccc
Q 020881 102 FGLYEYFKSLYPDILVDYNRTFIFFLSSASAQVFADIALCPFESVKVRVQAQP------HFAKGLSDGFPKVYKTEGLAG 175 (320)
Q Consensus 102 f~~~~~l~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~iktr~q~~~------~~~~~~~~~~~~i~~~~G~~g 175 (320)
|.+||.+++.+.+. +.......+++|+++++++.++++|+|++|+|+|++. ..|++.++++++|+++||++|
T Consensus 191 f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~g 268 (297)
T 1okc_A 191 FGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKA 268 (297)
T ss_dssp HHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCe
Confidence 99999999987543 3445677889999999999999999999999999874 258999999999999999999
Q ss_pred cccchHHHHHhHhhhHHHHHHHHHHHHHH
Q 020881 176 FYRGLFPLWCRNLPFSMIMFSTFEHSVDF 204 (320)
Q Consensus 176 lyrG~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
||||+.|++++. +..+++|.+||.+++.
T Consensus 269 lyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 269 FFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp GGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred EecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 999999999996 5788999999998864
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=35.90 E-value=33 Score=23.01 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.6
Q ss_pred hchHHHhhcCchhHHHHhhhhHHHHHHHHHHHHHHc
Q 020881 266 IGFLNLFTRSLPVRITIVGPVVTLQWFLYDSIKVLN 301 (320)
Q Consensus 266 eG~~~ly~~G~~~~~~~~~~~~~i~~~~~e~~~~~l 301 (320)
.|+...+| -+.-.++..+|..++.+.+|++..+..
T Consensus 32 ~~i~N~~R-R~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 32 DALPNVWR-RFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHH-HHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 46777788 777788999999999999999998873
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=33.64 E-value=16 Score=24.05 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=23.4
Q ss_pred HHhCcCCCCChhhHHHHHHHhhCc----cccccchHHHHHhHh
Q 020881 150 VQAQPHFAKGLSDGFPKVYKTEGL----AGFYRGLFPLWCRNL 188 (320)
Q Consensus 150 ~q~~~~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~~~ 188 (320)
||.+.+++.+.-+-+..++.+-|+ +..|+|++..+.|.+
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 456667777777777788877776 457888877776554
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=32.68 E-value=45 Score=22.32 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=29.5
Q ss_pred hchHHHhhcCchhHHHHhhhhHHHHHHHHHHHHHHc
Q 020881 266 IGFLNLFTRSLPVRITIVGPVVTLQWFLYDSIKVLN 301 (320)
Q Consensus 266 eG~~~ly~~G~~~~~~~~~~~~~i~~~~~e~~~~~l 301 (320)
.|+...+| -+.-.++.++|..++++.+|++..+..
T Consensus 32 ~~i~n~~R-R~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLR-RTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHH-HHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 56777788 677788899999999999999998873
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=18.67 E-value=99 Score=25.89 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHhhhhcCcHHHHHHHHHhCcCCCCChhhHHHHHHHhhC
Q 020881 132 AQVFADIALCPFESVKVRVQAQPHFAKGLSDGFPKVYKTEG 172 (320)
Q Consensus 132 a~~~~~~i~~P~d~iktr~q~~~~~~~~~~~~~~~i~~~~G 172 (320)
.-.++++=.+|||++|-.++.. -+....+.+.+.++|
T Consensus 271 yyqLaTFdnypfdllRfqL~Sl----istp~~I~e~i~K~G 307 (368)
T 3vjj_A 271 FYQLATFDNYPFDLLRFQLSSL----ISTPALIREKIAKEG 307 (368)
T ss_dssp HHHHHHCTTCBHHHHHHHCSSC----CCCCHHHHHHHHHSC
T ss_pred eeeeecCCCCCHHHHHHHhhhh----ccChHHHHHHHHhcC
Confidence 3445667789999998877543 456788899999987
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=15.85 E-value=94 Score=26.04 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHhhcCcHHHHHHHHhccc--hhHHHHHHHhhch
Q 020881 235 AVGTLISNPADNIVASLYNKK--AENVLQAVKKIGF 268 (320)
Q Consensus 235 ~~~~~~t~Pldvv~tr~q~~~--~~~~~~i~~~eG~ 268 (320)
.++++-.+|||.+|-.++..- ...+++.++++|+
T Consensus 273 qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcCc
Confidence 466778899999988877543 7789999999974
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=15.29 E-value=65 Score=22.16 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=27.0
Q ss_pred hchHHHhhcCchhHHHHhhhhHHHHHHHHHHHHHH
Q 020881 266 IGFLNLFTRSLPVRITIVGPVVTLQWFLYDSIKVL 300 (320)
Q Consensus 266 eG~~~ly~~G~~~~~~~~~~~~~i~~~~~e~~~~~ 300 (320)
.|+...+| -+.-.++.++|..++.+.+|++.++.
T Consensus 42 ~~i~N~~R-R~~~q~l~v~pPfv~~Y~i~~Wa~~~ 75 (93)
T 3cx5_H 42 NAVFNSFR-RFKSQFLYVLIPAGIYWYWWKNGNEY 75 (93)
T ss_dssp TTSSSCSH-HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHH-HHHhcceEEechHhHHHHHHHHHHHH
Confidence 35556666 56667788999999999999998876
Done!