BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020883
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 186/302 (61%), Gaps = 6/302 (1%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +Y +TCP I+ + +AS DP++ A ++R+ FHDCF++GCD SVLL++T
Sbjct: 2 LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
++E+D PNI S+R V++D K +E +CP TVSCADI+AIA+ + GGP W V
Sbjct: 62 ESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPL 121
Query: 144 GRKDG-RVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEA 202
GR+D ++ ++LPAP FN+TQL SFA +GL DLV LSGGHT G + CS+F
Sbjct: 122 GRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFIN 181
Query: 203 RLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKG 262
RL NFS+ + DP+++ + E LR++CP+ N ST FDN YY L G
Sbjct: 182 RLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLNG 241
Query: 263 VFGSDQSLFGD--FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKCGV 318
+ SDQ LF T IV SF+ +Q FF F SM+K+GN+G++ + GE+RL+C
Sbjct: 242 LLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNF 301
Query: 319 VN 320
VN
Sbjct: 302 VN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 247 bits (630), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 126/302 (41%), Positives = 175/302 (57%), Gaps = 6/302 (1%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
LNA +Y TCP A I+ ++ A D ++ A ++R+ FHDCF+ GCDAS+LLD T
Sbjct: 3 LNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
++EK+ PN+ S R F V+D+ K LE ACP VSC+D++A+AS V+++GGP W VL
Sbjct: 63 QSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLL 122
Query: 144 GRKDGRVSK-ASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEA 202
GR+D + A S+P+P +++ + F+ GL DLVALSG HT G + C F
Sbjct: 123 GRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFNN 182
Query: 203 RLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKG 262
RL NFS + DP+++ L+ CP+ ST AFDNNY+ L G
Sbjct: 183 RLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDG 242
Query: 263 VFGSDQSLFGDF--RTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKCGV 318
+ SDQ LF T IV SFA +Q LFF+ F SM+ +GN+ + NGE+RL C
Sbjct: 243 LLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKK 302
Query: 319 VN 320
VN
Sbjct: 303 VN 304
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/307 (43%), Positives = 186/307 (60%), Gaps = 16/307 (5%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +Y+ +CP AE ++ AV A ++ + ++RM FHDCF+RGCDASVLLDST N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 85 KAEKDG-PPNISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
AEKD P N S+R F VI AK+ +E ACP TVSCADI+A A+RD ++G + V
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 144 GRKDGRVSKASETRS-LPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEA 202
GR+DG VS ASE + +P+P FN TQLI SFA + L ++V LSG H++G +HCSSF
Sbjct: 122 GRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTN 181
Query: 203 RLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQF------LD-STSSAFDNNYYK 255
RL NF+S IDP++ +A LR+ CP N+ +F LD T S DN YY
Sbjct: 182 RLYNFNSGSGIDPTLSPSYAALLRNTCPA-----NSTRFTPITVSLDIITPSVLDNMYYT 236
Query: 256 QLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVR 313
+ + G+ SDQ+L + V++ A++ + +F +MVK+G + ++ GE+R
Sbjct: 237 GVQLTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIR 296
Query: 314 LKCGVVN 320
C VVN
Sbjct: 297 TNCSVVN 303
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 178/300 (59%), Gaps = 11/300 (3%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L++++Y CP A I AV +A + ++ A +LR+ FHDCF++GCDASVLLD T
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
EK PN S+R F VID K+++E CP VSCADI+A+A+RD V GG WNVL
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 144 GRKDGRVSKASETRS-LPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEA 202
GR+D + S S LPAP FN++ LI +F+ +G ++LV LSG HT+G + C++F
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 203 RLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKG 262
R+ N S +IDP+ +A+ L++ CP D N F +T + FDN YY L KG
Sbjct: 182 RIYNES---NIDPT----YAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKG 234
Query: 263 VFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKCGVVN 320
+ SDQ LF T V +++ + F +F N+M+K+GN+ + +G++R C N
Sbjct: 235 LLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 176/304 (57%), Gaps = 6/304 (1%)
Query: 23 AALNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTP 82
+LNA +Y TCP A ++ V+ A D ++ A ++R+ FHDCF+ GCDAS+LLD++
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 83 QNKAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNV 141
+EK+ PN S R F V+D+ K LE ACP VSC D++A+AS+ V++SGGP W V
Sbjct: 62 SIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTV 121
Query: 142 LKGRKDG-RVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSF 200
GR+D ++A S+P+PT ++ + F+ GL DLVALSG HT G + C F
Sbjct: 122 DLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVF 181
Query: 201 EARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG 260
RL NFS + DP+++ L+ CP+ + + ST AFDNNY+ L
Sbjct: 182 SNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSN 241
Query: 261 KGVFGSDQSLFGDF--RTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T IV SFA +Q LFF+ F SM+ +GN+ + +GE+RL C
Sbjct: 242 NGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDC 301
Query: 317 GVVN 320
N
Sbjct: 302 KKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 174/301 (57%), Gaps = 8/301 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L+ Y ++CP +I+ V A + ++ A ++R+ FHDCF+ GCDAS+LLD
Sbjct: 2 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGA--- 58
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+EK PNI S R F VID KA +E ACP VSCADI+ +A+RD V +SGGP W V
Sbjct: 59 DSEKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 144 GRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEAR 203
GRKDG V+ + +LP+P + +I F L + D+VALSG HT G + C+ F R
Sbjct: 119 GRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNR 178
Query: 204 LRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKGV 263
L NF+ + D +++ L++ CP ST+ FDNNY+K L GKG+
Sbjct: 179 LFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGL 238
Query: 264 FGSDQSLFGD----FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIENGEVRLKCGVV 319
SDQ LF TK +VE+++ Q LFF++F +M+++GN+ +GEVR C V+
Sbjct: 239 LSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNISNGASGEVRTNCRVI 298
Query: 320 N 320
N
Sbjct: 299 N 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 170/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C S
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSIM 182
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 317 GVVN 320
VVN
Sbjct: 303 RVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 227 bits (578), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 169/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 317 GVVN 320
VVN
Sbjct: 302 RVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 169/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 317 GVVN 320
VVN
Sbjct: 302 RVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 169/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 317 GVVN 320
VVN
Sbjct: 303 RVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/304 (42%), Positives = 169/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 317 GVVN 320
VVN
Sbjct: 302 RVVN 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 174/305 (57%), Gaps = 10/305 (3%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLD-STSSAFDNNYYKQLTVG 260
RL NFS+ DP+++ + + LR CP N + +A +D T + FDN YY L
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPL-NGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 261 KGVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLK 315
KG+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 316 CGVVN 320
C VVN
Sbjct: 302 CRVVN 306
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 168/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LP P F + QL SF GL DLVALSGGHT G + C
Sbjct: 123 GRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 317 GVVN 320
VVN
Sbjct: 303 RVVN 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 169/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGH+ G + C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIM 181
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 317 GVVN 320
VVN
Sbjct: 302 RVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 224 bits (572), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 168/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LP P F + QL SF GL DLVALSGGHT G + C
Sbjct: 123 GRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 317 GVVN 320
VVN
Sbjct: 303 RVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 168/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ FHDCF+ GCDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVAL GGHT G + C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIM 181
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 317 GVVN 320
VVN
Sbjct: 302 RVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 223 bits (569), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 168/304 (55%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A ILR+ F DCF+ GCDAS+LLD+T
Sbjct: 3 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTSF 62
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 63 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 122
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 123 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 182
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 183 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 242
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 243 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 302
Query: 317 GVVN 320
VVN
Sbjct: 303 RVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/304 (42%), Positives = 167/304 (54%), Gaps = 8/304 (2%)
Query: 25 LNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQN 84
L +YD +CP I+ D + N DP++ A IL + F DCF+ GCDAS+LLD+T
Sbjct: 2 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSF 61
Query: 85 KAEKDGPPNI-SVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLK 143
+ EKD N S R F VID KA +E ACP TVSCAD++ IA++ VT++GGP W V
Sbjct: 62 RTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPL 121
Query: 144 GRKDGRVSKAS-ETRSLPAPTFNVTQLIQSFAQRGLG-VQDLVALSGGHTLGFSHCSSFE 201
GR+D + +LPAP F + QL SF GL DLVALSGGHT G + C
Sbjct: 122 GRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIM 181
Query: 202 ARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK 261
RL NFS+ DP+++ + + LR CP F T + FDN YY L K
Sbjct: 182 DRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQK 241
Query: 262 GVFGSDQSLFGD---FRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII--ENGEVRLKC 316
G+ SDQ LF T +V SFA FF FV +M ++GN+ + G++RL C
Sbjct: 242 GLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNC 301
Query: 317 GVVN 320
VVN
Sbjct: 302 RVVN 305
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 178/305 (58%), Gaps = 15/305 (4%)
Query: 24 ALNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQ 83
L+ +Y QTCP+AE I+ + V+ A D + A +LR+ FHDCF++GCDASVLLD +
Sbjct: 8 GLSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSAT 67
Query: 84 NKAEKDGPPNISVR--SFYVIDDAKAELEKACP-HTVSCADIIAIASRDVVTMSGGPYWN 140
E+ PPN+++R +F ++D + LE+ C VSC+DI+A+A+RD V +SGGP +
Sbjct: 68 GPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 141 VLKGRKDGR--VSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCS 198
V GR+D R S LP P+ NV L+ + GL DLV +SGGHT+G +HCS
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 199 SFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLD-STSSAFDNNYYKQL 257
SFE RL DP++ F +L+ CP DR LD T + FDN YY L
Sbjct: 188 SFEDRL-----FPRPDPTISPTFLSRLKRTCPAKGTDRRT--VLDVRTPNVFDNKYYIDL 240
Query: 258 TVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGI--IENGEVRLK 315
+G+F SDQ LF + T+ IVE FA Q FF++F S+ K+G + + + GEVR
Sbjct: 241 VNREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRN 300
Query: 316 CGVVN 320
C V N
Sbjct: 301 CSVRN 305
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 43/197 (21%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQ- 175
VS AD +A V ++GGP GR+D + E R LP T L F +
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGRED-KPEPPPEGR-LPDATKGSDHLRDVFGKA 147
Query: 176 RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKD 235
GL QD+VALSGGHT+G +H K RS P
Sbjct: 148 MGLSDQDIVALSGGHTIGAAH---------------------------KERSGFEGP--- 177
Query: 236 RNAGQFLDSTSSAFDNNYYKQLTVGK--GV--FGSDQSLFGDFRTKWIVESFAIDQGLFF 291
S FDN+Y+ +L G+ G+ SD++L D + +VE +A D+ +FF
Sbjct: 178 ------WTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFF 231
Query: 292 KEFVNSMVKLGNVGIIE 308
++ + +KL +G E
Sbjct: 232 ADYAEAHLKLSELGFAE 248
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKD-GRVSKASETRSLP--APTFNVTQLIQSF 173
V+ AD+ +AS + +GGP + GR D + E LP P L F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 174 AQRGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPN 233
+ GL +++VALSG HTLG S D K +K K
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRP--------------------DRSGWGKPETKYTKDG 186
Query: 234 KDRNAGQFLDSTSSAFDNNYYKQLTVGKG----VFGSDQSLFGDFRTKWIVESFAIDQGL 289
GQ + FDN+Y+K + + V +D +LF D K E +A D
Sbjct: 187 PGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEA 246
Query: 290 FFKEFVNSMVKLGNVG 305
FFK++ + KL N+G
Sbjct: 247 FFKDYAEAHAKLSNLG 262
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 180
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKG----VFGSD 267
K RS P S FDN+Y+ +L G+ SD
Sbjct: 181 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIENGEV 312
++L D + +V+ +A D+ FF ++ + KL +G + E+
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFADAHEM 264
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 180
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 181 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 260
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 180
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 181 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 260
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 180
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 181 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 260
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 180
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 181 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 260
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 74 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 124
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 125 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 168
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 169 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 248
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 74 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 124
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 125 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 168
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 169 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 248
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 74 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 124
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 125 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 168
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 169 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 248
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 74 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 124
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 125 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 168
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 169 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 248
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLL 211
E R LP T L F + GL QD+VALSGGHT+G +H
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH--------------- 180
Query: 212 DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGSD 267
K RS P S FDN+Y+ +L G +G+ SD
Sbjct: 181 ------------KERSGFEGP---------WTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 268 QSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 260
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 55/223 (24%)
Query: 93 NISVRSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK 152
+I+VR +++ KAE +S AD +A V ++GGP GR+D +
Sbjct: 86 DIAVR---LLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED-KPEP 136
Query: 153 ASETRSLPAPTFNVTQLIQSFAQ-RGLGVQDLVALSGGHTLGFSH--CSSFEARLRNFSS 209
E R LP T L F + GL QD+VALSGGHT+G +H S FE
Sbjct: 137 PPEGR-LPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWT---- 191
Query: 210 LLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FG 265
S FDN+Y+ +L G +G+
Sbjct: 192 ----------------------------------SNPLIFDNSYFTELLSGEKEGLLQLP 217
Query: 266 SDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE 308
SD++L D + +V+ +A D+ FF ++ + KL +G +
Sbjct: 218 SDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSELGFAD 260
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VALSG HTLG +H S +E +++ D ++L L
Sbjct: 162 NMNDREVVALSGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S Y QL +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKSG------YLQLP-------TDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 77/193 (39%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G HTLG +H S +E +++ D ++L L
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S Y QL +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKSG------YLQLP-------TDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G HTLG +H S +E +++ D ++L L
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNVFDNSFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G HTLG +H S +E +++ D ++L L
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNNVFDNSFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G HTLG +H S +E ++ D ++L L
Sbjct: 162 NMNDREVVALMGAHTLGKTHLKNSGYEGPWTANPNVFDNSFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 89/245 (36%), Gaps = 56/245 (22%)
Query: 87 EKDGPPNISVRSFY------------VIDDAKAELEKACPHTVSCADIIAIASRDVVTMS 134
+KDG PN + F + A L+K P +S AD+ +A+ +
Sbjct: 45 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYM 103
Query: 135 GGPYWNVLKGR---KDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHT 191
GGP GR KDG V LP + + + + F + G Q+ VAL G HT
Sbjct: 104 GGPTIPFCWGRVDAKDGSV--CGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHT 161
Query: 192 LGFSHC--SSFEARLRN---------FSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQ 240
G +H S + + F+ LLD D + N Q
Sbjct: 162 CGETHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVL---------------NPKVEQMQ 206
Query: 241 FLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVK 300
+D ++ + SD L D + VE +A D F K+F N+ K
Sbjct: 207 LMDRATTKL------------MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKK 254
Query: 301 LGNVG 305
L +G
Sbjct: 255 LTELG 259
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 88/245 (35%), Gaps = 56/245 (22%)
Query: 87 EKDGPPNISVRSFY------------VIDDAKAELEKACPHTVSCADIIAIASRDVVTMS 134
+KDG PN + F + A L+K P +S AD+ +A+ +
Sbjct: 44 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYM 102
Query: 135 GGPYWNVLKGR---KDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHT 191
GGP GR KDG V LP + + + + F + G Q+ VAL G HT
Sbjct: 103 GGPTIPFCWGRVDAKDGSV--CGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHT 160
Query: 192 LGFSHC--SSFEARLRN---------FSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQ 240
G H S + + F+ LLD D + N Q
Sbjct: 161 CGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVL---------------NPKVEQMQ 205
Query: 241 FLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVK 300
+D ++ + SD L D + VE +A D F K+F N+ K
Sbjct: 206 LMDRATTKL------------MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKK 253
Query: 301 LGNVG 305
L +G
Sbjct: 254 LTELG 258
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 88/245 (35%), Gaps = 56/245 (22%)
Query: 87 EKDGPPNISVRSFY------------VIDDAKAELEKACPHTVSCADIIAIASRDVVTMS 134
+KDG PN + F + A L+K P +S AD+ +A+ +
Sbjct: 45 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQ-ISYADLWVLAAYVAIEYM 103
Query: 135 GGPYWNVLKGR---KDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHT 191
GGP GR KDG V LP + + + + F + G Q+ VAL G HT
Sbjct: 104 GGPTIPFCWGRVDAKDGSV--CGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHT 161
Query: 192 LGFSHC--SSFEARLRN---------FSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQ 240
G H S + + F+ LLD D + N Q
Sbjct: 162 CGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVL---------------NPKVEQMQ 206
Query: 241 FLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVK 300
+D ++ + SD L D + VE +A D F K+F N+ K
Sbjct: 207 LMDRATTKL------------MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKK 254
Query: 301 LGNVG 305
L +G
Sbjct: 255 LTELG 259
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEKYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLENGI 271
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 160
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 161 NMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFYLNL-----LNEDWKLEKN 215
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 216 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDF 261
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 262 SKAFEKLLENGIT 274
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 154
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 155 NMNDREVVALMGAHALGKTHLKRSGYEGPFGAANNVFTNEFYLNL-----LNEDWKLEKN 209
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 210 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 255
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 256 SKAFEKLLENGIT 268
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGCANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEGYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNENWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALKGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLENGI 271
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPFGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEYYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLENGI 271
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL-----LNENWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 265 SKAFEKLLENGIT 277
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL-----LNENWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 74/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E ++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNCFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 160
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 161 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 215
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 216 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 261
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 262 SKAFEKLLENGIT 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 265 SKAFEKLLENGIT 277
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLEDGIT 275
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLENGI 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 219
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 220 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 265
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 266 SKAFEKLLENGI 277
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLENGI 271
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLEDGI 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPYGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLEDGI 271
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLEDGI 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S Y L +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKSG------YMHLP-------TDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLENGI 271
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPQGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLEDGI 271
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 27/194 (13%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRN--FSSLLDIDPSMDLDFAEKLRSKCPKP 232
+ +++VAL G H LG +H S +E N F++ +F L ++ K
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTN----------EFYLNLLNEDWKL 214
Query: 233 NKDRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFK 292
K+ + DS S G + +D SL D + IV+ +A DQ FFK
Sbjct: 215 EKNDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 261
Query: 293 EFVNSMVKLGNVGI 306
+F + KL GI
Sbjct: 262 DFSKAFEKLLENGI 275
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 27/194 (13%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRN--FSSLLDIDPSMDLDFAEKLRSKCPKP 232
+ +++VAL G H LG +H S +E N F++ +F L ++ K
Sbjct: 160 NMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTN----------EFYLNLLNEDWKL 209
Query: 233 NKDRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFK 292
K+ + DS S G + +D SL D + IV+ +A DQ FFK
Sbjct: 210 EKNDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 256
Query: 293 EFVNSMVKLGNVGI 306
+F + KL GI
Sbjct: 257 DFSKAFEKLLENGI 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 27/194 (13%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRN--FSSLLDIDPSMDLDFAEKLRSKCPKP 232
+ +++VAL G H LG +H S +E N F++ +F L ++ K
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGGGANNVFTN----------EFYLNLLNEDWKL 208
Query: 233 NKDRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFK 292
K+ + DS S G + +D SL D + IV+ +A DQ FFK
Sbjct: 209 EKNDANNEQWDSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 255
Query: 293 EFVNSMVKLGNVGI 306
+F + KL GI
Sbjct: 256 DFSKAFEKLLENGI 269
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 158
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 159 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNL-----LNEDWKLEKN 213
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 214 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 259
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 260 SKAFEKLLEDGI 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLEDGI 274
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 160 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNL-----LNEDWKLEKN 214
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + +D SL D + IV+ +A DQ FFK+F
Sbjct: 215 DANNEQW-DSKS-------------GYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 260
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 261 SKAFEKLLEDGI 272
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 219
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + ++ SL D + IV+ +A DQ FFK+F
Sbjct: 220 DANNEQW-DSKS-------------GYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDF 265
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 266 SKAFEKLLENGI 277
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 163
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 164 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 218
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + ++ SL D + IV+ +A DQ FFK+F
Sbjct: 219 DANNEQW-DSKS-------------GYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDF 264
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 265 SKAFEKLLENGI 276
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 21/193 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKRSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + + SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGII 307
+ KL GI
Sbjct: 263 SKAFEKLLENGIT 275
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 161
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 162 NMNDREVVALMGAHALGKTHLKNSGYEGPGGAANNVFTNEFYLNL-----LNEDWKLEKN 216
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + ++ SL D + IV+ +A DQ FFK+F
Sbjct: 217 DANNEQW-DSKS-------------GYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 263 SKAFEKLLENGI 274
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 21/192 (10%)
Query: 117 VSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQR 176
+S D+ ++ V GP GR D + LP + + F +
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 164
Query: 177 GLGVQDLVALSGGHTLGFSHC--SSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNK 234
+ +++VAL G H LG +H S +E +++ + ++L L
Sbjct: 165 NMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNL-----LNEDWKLEKN 219
Query: 235 DRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEF 294
D N Q+ DS S G + + SL D + IV+ +A DQ FFK+F
Sbjct: 220 DANNEQW-DSKS-------------GYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDF 265
Query: 295 VNSMVKLGNVGI 306
+ KL GI
Sbjct: 266 SKAFEKLLENGI 277
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
pdb|3Q8M|B Chain B, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a)
In Complex With Substrate 5'-Flap Dna And K+
Length = 341
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 104 DAKAELEKACPHTVSCADIIAIASRDVVTMS-GGPYWNVLKGRKDGRVSKASETRSLPAP 162
DA +E E +C V + A A+ D+ ++ G P R ASE + LP
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMACLTFGSPVLM--------RHLTASEAKKLPIQ 204
Query: 163 TFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFA 222
F++++++Q GL + V L LG +C S I P +D
Sbjct: 205 EFHLSRILQEL---GLNQEQFVDLC--ILLGSDYCESIRG----------IGPKRAVDLI 249
Query: 223 EKLRS 227
+K +S
Sbjct: 250 QKHKS 254
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Y Chain Y, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|Z Chain Z, Crystal Structure Of The Human Fen1-Pcna Complex
Length = 379
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 104 DAKAELEKACPHTVSCADIIAIASRDVVTMS-GGPYWNVLKGRKDGRVSKASETRSLPAP 162
DA +E E +C V + A A+ D+ ++ G P R ASE + LP
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLM--------RHLTASEAKKLPIQ 204
Query: 163 TFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFA 222
F++++++Q GL + V L LG +C S I P +D
Sbjct: 205 EFHLSRILQEL---GLNQEQFVDLC--ILLGSDYCESIRG----------IGPKRAVDLI 249
Query: 223 EKLRS 227
+K +S
Sbjct: 250 QKHKS 254
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Product 5'-Flap Dna, Sm3+, And K+
pdb|3Q8L|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In
Complex With Substrate 5'-Flap Dna, Sm3+, And K+
Length = 341
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 104 DAKAELEKACPHTVSCADIIAIASRDVVTMS-GGPYWNVLKGRKDGRVSKASETRSLPAP 162
DA +E E +C V + A A+ D+ ++ G P R ASE + LP
Sbjct: 153 DAPSEAEASCAALVKAGKVYAAATEDMDCLTFGSPVLM--------RHLTASEAKKLPIQ 204
Query: 163 TFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFA 222
F++++++Q GL + V L LG +C S I P +D
Sbjct: 205 EFHLSRILQEL---GLNQEQFVDLC--ILLGSDYCESIRG----------IGPKRAVDLI 249
Query: 223 EKLRS 227
+K +S
Sbjct: 250 QKHKS 254
>pdb|2J1W|A Chain A, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d
pdb|2J1W|B Chain B, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d
Length = 219
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C A + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPAQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 45/171 (26%)
Query: 115 HTVSCADIIAIA-SRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSF 173
H VS D + A + +GGP L GR + +S+ S +P PT + +++
Sbjct: 102 HGVSFGDFVQFAGAVGAANCAGGPRLQFLAGRSN--ISQPSPDGLVPDPTDSADKILARM 159
Query: 174 AQRGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPN 233
A G ++V L H++ + +D D
Sbjct: 160 ADIGFSPTEVVHLLASHSIAAQY-------------------EVDTDV------------ 188
Query: 234 KDRNAGQFLDSTSSAFDNNYY-KQLTVGKGVFGSDQS------LFGDFRTK 277
AG DST S FD ++ + L G GS Q + G+FR +
Sbjct: 189 ----AGSPFDSTPSVFDTQFFVESLLHGTQFTGSGQGGEVMSPIPGEFRLQ 235
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 55 VPARILRMFFHDCFIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVID 103
+P ++ F HD FI+GC + + DGP ++ V + Y D
Sbjct: 264 IPQSVVAAFTHDIFIKGCQVNFSI----------DGPEDVEVTTLYPED 302
>pdb|2AC0|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2AC0|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2AC0|C Chain C, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2AC0|D Chain D, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2ADY|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iv)
pdb|2ADY|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iv)
pdb|2AHI|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2AHI|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2AHI|C Chain C, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2AHI|D Chain D, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2ATA|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|2ATA|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|2ATA|C Chain C, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|2ATA|D Chain D, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|3IGL|A Chain A, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 1)
pdb|3KZ8|A Chain A, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 3)
pdb|3KZ8|B Chain B, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 3)
Length = 200
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 96
>pdb|1GZH|A Chain A, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound
To The P53 Tumor Supressor
Length = 198
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 45 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 95
>pdb|2FEJ|A Chain A, Solution Structure Of Human P53 Dna Binding Domain
Length = 204
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 96
>pdb|1YCS|A Chain A, P53-53bp2 Complex
Length = 199
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 96
>pdb|1TSR|A Chain A, P53 Core Domain In Complex With Dna
pdb|1TSR|B Chain B, P53 Core Domain In Complex With Dna
pdb|1TSR|C Chain C, P53 Core Domain In Complex With Dna
pdb|1TUP|A Chain A, Tumor Suppressor P53 Complexed With Dna
pdb|1TUP|B Chain B, Tumor Suppressor P53 Complexed With Dna
pdb|1TUP|C Chain C, Tumor Suppressor P53 Complexed With Dna
pdb|2OCJ|A Chain A, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|B Chain B, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|C Chain C, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|D Chain D, Human P53 Core Domain In The Absence Of Dna
Length = 219
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2YBG|A Chain A, Structure Of Lys120-Acetylated P53 Core Domain
pdb|2YBG|B Chain B, Structure Of Lys120-Acetylated P53 Core Domain
pdb|2YBG|C Chain C, Structure Of Lys120-Acetylated P53 Core Domain
pdb|2YBG|D Chain D, Structure Of Lys120-Acetylated P53 Core Domain
Length = 200
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 96
>pdb|2PCX|A Chain A, Crystal Structure Of P53dbd(R282q) At 1.54-Angstrom
Resolution
Length = 220
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 52 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 102
>pdb|2J21|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R282w
pdb|2J21|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R282w
Length = 219
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|3D09|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And
Second-Site Suppressor Mutations H168r And T123a
Length = 200
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|1GZH|C Chain C, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound
To The P53 Tumor Supressor
Length = 198
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 45 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 95
>pdb|3D08|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And
Second-Site Suppressor Mutation H168r
pdb|3D0A|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3D0A|B Chain B, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3D0A|C Chain C, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3D0A|D Chain D, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3IGK|A Chain A, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 2)
Length = 200
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGLA 96
>pdb|3D05|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (Ii)
pdb|3D06|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (I)
pdb|3D07|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (Iii)
pdb|3D07|B Chain B, Human P53 Core Domain With Hot Spot Mutation R249s (Iii)
Length = 200
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 96
>pdb|2XWR|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human P53
With Extended N Terminus
pdb|2XWR|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human P53
With Extended N Terminus
Length = 205
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 51 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 101
>pdb|2BIN|A Chain A, Human P53 Core Domain Mutant M133l-H168r-V203a-N239y-N268d
Length = 219
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2H1L|M Chain M, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|N Chain N, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|O Chain O, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|P Chain P, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|Q Chain Q, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|R Chain R, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|S Chain S, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|T Chain T, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|U Chain U, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|V Chain V, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|W Chain W, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|X Chain X, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 203
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 50 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 100
>pdb|2J1Z|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-F270l
pdb|2J1Z|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-F270l
Length = 219
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2BIP|A Chain A, Human P53 Core Domain Mutant
M133l-H168r-V203a-N239y-R249s- N268d
Length = 219
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|1UOL|A Chain A, Crystal Structure Of The Human P53 Core Domain Mutant
M133lV203AN239YN268D AT 1.9 A RESOLUTION.
pdb|1UOL|B Chain B, Crystal Structure Of The Human P53 Core Domain Mutant
M133lV203AN239YN268D AT 1.9 A RESOLUTION
Length = 219
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2QXB|A Chain A, Human P53 Core Domain Mutant N235k
pdb|2QXB|B Chain B, Human P53 Core Domain Mutant N235k
pdb|2QXB|C Chain C, Human P53 Core Domain Mutant N235k
pdb|2QXB|D Chain D, Human P53 Core Domain Mutant N235k
Length = 195
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 45 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 95
>pdb|2J1Y|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
pdb|2J1Y|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
pdb|2J1Y|C Chain C, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
pdb|2J1Y|D Chain D, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
Length = 200
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 46 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 96
>pdb|2BIM|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h
pdb|2BIM|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h
Length = 219
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|3KMD|A Chain A, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
pdb|3KMD|B Chain B, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
pdb|3KMD|D Chain D, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
pdb|3KMD|C Chain C, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
Length = 200
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 48 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 98
>pdb|2WGX|A Chain A, Human P53 Core Domain Mutant
M133l-V203a-Y236f-N239y-T253i- N268d
pdb|2WGX|B Chain B, Human P53 Core Domain Mutant
M133l-V203a-Y236f-N239y-T253i- N268d
Length = 219
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2BIO|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-R249s-N268d
Length = 219
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2QXC|A Chain A, Human P53 Core Domain Mutant N239y
pdb|2QXC|B Chain B, Human P53 Core Domain Mutant N239y
pdb|2QXC|C Chain C, Human P53 Core Domain Mutant N239y
pdb|2QXC|D Chain D, Human P53 Core Domain Mutant N239y
Length = 195
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 45 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 95
>pdb|2BIQ|A Chain A, Human P53 Core Domain Mutant
T123a-M133l-H168r-V203a-N239y- R249s-N268d
Length = 219
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|1KZY|A Chain A, Crystal Structure Of The 53bp1 Brct Region Complexed To
Tumor Suppressor P53
pdb|1KZY|B Chain B, Crystal Structure Of The 53bp1 Brct Region Complexed To
Tumor Suppressor P53
Length = 195
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 70 RGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAIA 126
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +A
Sbjct: 45 KTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLA 95
>pdb|2J1X|A Chain A, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d
pdb|2J1X|B Chain B, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d
pdb|2VUK|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small-molecule Drug Phikan083
pdb|2VUK|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small-molecule Drug Phikan083
pdb|2X0U|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To A
2- Amino Substituted Benzothiazole Scaffold
pdb|2X0U|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To A
2- Amino Substituted Benzothiazole Scaffold
pdb|2X0V|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To 4-(
Trifluoromethyl)benzene-1,2-Diamine
pdb|2X0V|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To 4-(
Trifluoromethyl)benzene-1,2-Diamine
pdb|2X0W|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To
5,6- Dimethoxy-2-Methylbenzothiazole
pdb|2X0W|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To
5,6- Dimethoxy-2-Methylbenzothiazole
pdb|4AGL|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan784
pdb|4AGL|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan784
pdb|4AGM|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5086
pdb|4AGM|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5086
pdb|4AGN|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5116
pdb|4AGN|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5116
pdb|4AGO|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5174
pdb|4AGO|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5174
pdb|4AGP|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5176
pdb|4AGP|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5176
pdb|4AGQ|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5196
pdb|4AGQ|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5196
Length = 219
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|2J20|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c
pdb|2J20|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c
Length = 219
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 68 FIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVIDDAK--AELEKACPHTVSCADIIAI 125
+ C + +DSTP PP VR+ + ++ E+ + CPH C+D +
Sbjct: 44 LAKTCPVQLWVDSTP--------PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL 95
Query: 126 A 126
A
Sbjct: 96 A 96
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 115 HTVSCADIIAIASRDVVTMS---GGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQ 171
H VS D+I A+ V MS G P L GR S+ S +P P VT ++
Sbjct: 109 HGVSFGDLIQFAA--AVGMSNCPGSPRLEFLTGRS--NSSQPSPPSLIPGPGNTVTAILD 164
Query: 172 SFAQRGLGVQDLVALSGGHTL 192
F G ++V L H+L
Sbjct: 165 RFGDAGFSPDEVVDLLAAHSL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,227,767
Number of Sequences: 62578
Number of extensions: 366968
Number of successful extensions: 1031
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 142
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)