Query 020883
Match_columns 320
No_of_seqs 178 out of 1400
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:54:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-108 2E-113 784.3 25.1 297 21-320 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2E-101 4E-106 732.4 25.0 296 24-319 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 2.8E-73 6.2E-78 522.5 7.0 228 41-286 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 2.1E-69 4.5E-74 508.2 20.3 228 39-316 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.1E-67 2.3E-72 491.0 17.9 228 36-307 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 2E-66 4.3E-71 481.1 18.1 231 27-307 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 7.1E-65 1.5E-69 485.2 20.5 236 37-320 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 3.2E-64 6.9E-69 465.7 19.0 219 39-307 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 7.4E-60 1.6E-64 439.1 16.5 222 40-303 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.1E-56 2.3E-61 435.6 20.6 253 39-308 45-397 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 2.3E-54 5.1E-59 442.9 22.0 253 39-308 55-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.9E-50 4.1E-55 412.1 21.5 253 39-308 57-410 (726)
13 cd08201 plant_peroxidase_like_ 100.0 1.2E-50 2.6E-55 375.2 9.9 217 43-303 29-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.9E-39 6.3E-44 302.8 16.3 219 43-305 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 5.2E-34 1.1E-38 293.2 15.4 219 40-305 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 2E-33 4.3E-38 287.5 17.0 219 43-305 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.9E-30 4.1E-35 255.2 19.0 250 40-305 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.3 1.7E-11 3.6E-16 122.2 11.9 215 43-305 452-725 (730)
19 PTZ00411 transaldolase-like pr 52.0 1.1E+02 0.0024 30.0 9.4 48 133-180 179-230 (333)
20 PF11895 DUF3415: Domain of un 51.7 12 0.00026 29.1 2.2 20 289-308 2-21 (80)
21 PRK05269 transaldolase B; Prov 41.2 1.9E+02 0.004 28.3 9.1 135 132-292 168-311 (318)
22 COG3763 Uncharacterized protei 38.5 31 0.00067 26.3 2.5 28 40-67 24-51 (71)
23 TIGR00874 talAB transaldolase. 33.7 3.4E+02 0.0074 26.5 9.6 137 132-291 166-310 (317)
24 PRK12346 transaldolase A; Prov 22.1 71 0.0015 31.2 2.6 65 117-181 150-220 (316)
25 PF08782 c-SKI_SMAD_bind: c-SK 20.0 40 0.00087 27.2 0.4 14 63-77 4-17 (96)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=9.9e-109 Score=784.26 Aligned_cols=297 Identities=42% Similarity=0.739 Sum_probs=281.9
Q ss_pred cccccccchhhcCCccHHHHHHHHHHHHHhcCCCCccchheeeeecccCCCCCceeecCCCCCCCcCcCCCCCCCcchHH
Q 020883 21 AEAALNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQNKAEKDGPPNISVRSFY 100 (320)
Q Consensus 21 ~~~~l~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~L~g~~ 100 (320)
+.++|+++||++|||++|+||+++|++++.++++++|++|||+||||||+||||||||+++ ..||++++|.+|+||+
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~~l~Gf~ 97 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNLLLRGYD 97 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCcCcchHH
Confidence 4567999999999999999999999999999999999999999999999999999999965 3799999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCc
Q 020883 101 VIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGV 180 (320)
Q Consensus 101 ~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~ 180 (320)
+||.||++||++||++|||||||||||||||+++|||.|+|++||||+++|...++.+||+|+.++++|++.|+++||+.
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999877666789999999999999999999999
Q ss_pred ccchhhccCccccccccCccccccccCCCCC-CCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhc
Q 020883 181 QDLVALSGGHTLGFSHCSSFEARLRNFSSLL-DIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTV 259 (320)
Q Consensus 181 ~dlVaLsGaHTiG~~hc~~f~~rl~~f~g~~-~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~ 259 (320)
+|||+||||||||++||.+|.+|||||.+++ .+||+|||.|+..|++.||..++..+.+++|+.||.+|||+||+||+.
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~ 257 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKN 257 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHh
Confidence 9999999999999999999999999999875 589999999999999999953222346789999999999999999999
Q ss_pred CCcccccccccccCcchHHHHHHHhhCH----HHHHHHHHHHHHHHhcCCCCC--CCcccccCcCCC
Q 020883 260 GKGVFGSDQSLFGDFRTKWIVESFAIDQ----GLFFKEFVNSMVKLGNVGIIE--NGEVRLKCGVVN 320 (320)
Q Consensus 260 ~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~t--~GeiR~~C~~~n 320 (320)
++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||+|+|+| +|||||+|+++|
T Consensus 258 ~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 258 GRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred cCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999999999999999875 599999999999999999999 999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.7e-101 Score=732.41 Aligned_cols=296 Identities=53% Similarity=0.925 Sum_probs=285.1
Q ss_pred ccccchhhcCCccHHHHHHHHHHHHHhcCCCCccchheeeeecccCCCCCceeecCCCCCCCcCcCCCCCCCcchHHHHH
Q 020883 24 ALNAHYYDQTCPQAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDSTPQNKAEKDGPPNISVRSFYVID 103 (320)
Q Consensus 24 ~l~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~~~~~~E~~~~~N~~L~g~~~Id 103 (320)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.+..+|+++++|.+|+||++|+
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~i~ 80 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDVID 80 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHHHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCcccc
Q 020883 104 DAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDL 183 (320)
Q Consensus 104 ~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dl 183 (320)
.||+++|+.||++||||||||||||+||+++|||.|+|++||+|+++|.+.++..||.|+.+++++++.|+++||+++||
T Consensus 81 ~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d~ 160 (298)
T cd00693 81 DIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTDL 160 (298)
T ss_pred HHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999998876554789999999999999999999999999
Q ss_pred hhhccCccccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcCCcc
Q 020883 184 VALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKGV 263 (320)
Q Consensus 184 VaLsGaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~gl 263 (320)
|+|+||||||++||.+|.+|||+|+|++.+||+||+.|+..|++.||.+....+.+++|+.||.+|||+||++|+.++|+
T Consensus 161 VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~gl 240 (298)
T cd00693 161 VALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGRGL 240 (298)
T ss_pred eeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcccC
Confidence 99999999999999999999999999988999999999999999999754444578999999999999999999999999
Q ss_pred cccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCC--CCcccccCcCC
Q 020883 264 FGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE--NGEVRLKCGVV 319 (320)
Q Consensus 264 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t--~GeiR~~C~~~ 319 (320)
|+|||+|+.|++|+++|++||.||+.|+++|++||+||++|+|+| +||||++|+++
T Consensus 241 L~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 241 LTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred ccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999 99999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=2.8e-73 Score=522.47 Aligned_cols=228 Identities=50% Similarity=0.835 Sum_probs=208.2
Q ss_pred HHHHHHHHHhcCCCCccchheeeeecccC-CCCCceeecCCCCCCCcCcCCCCCCCcc-hHHHHHHHHHHHHhhCCCCCC
Q 020883 41 ILDAVRNASMHDPKVPARILRMFFHDCFI-RGCDASVLLDSTPQNKAEKDGPPNISVR-SFYVIDDAKAELEKACPHTVS 118 (320)
Q Consensus 41 Vr~~v~~~~~~~~~~aa~llRL~FHDcfv-~GcDgSill~~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~le~~cp~~VS 118 (320)
||++|++.+.++++++|+||||+|||||+ +|||||||+. ..|+++++|.||+ ++++|+.||+++|+.||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccCcceeeechhhHHhhhcccccCCCC
Confidence 79999999999999999999999999999 9999999983 4799999999999 999999999999999999999
Q ss_pred HHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCcccchhhccCccccccccC
Q 020883 119 CADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCS 198 (320)
Q Consensus 119 cADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaHTiG~~hc~ 198 (320)
|||||+||||+||+.+|||.|+|++||+|++++...++.+||.|+.++++|++.|+++|||++|||||+||||||++||.
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~ 155 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCS 155 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGG
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceec
Confidence 99999999999999999999999999999999987543469999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcCCcccccccccccCcchHH
Q 020883 199 SFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKW 278 (320)
Q Consensus 199 ~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~ 278 (320)
+|. ||| + .+||.||+.|+.. .|+ .++.+ .+++| ||.+|||+||++++.++|+|.||++|+.|++|++
T Consensus 156 ~f~-rl~-~----~~dp~~d~~~~~~---~C~-~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 156 SFS-RLY-F----PPDPTMDPGYAGQ---NCN-SGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP 222 (230)
T ss_dssp CTG-GTS-C----SSGTTSTHHHHHH---SSS-TSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH
T ss_pred ccc-ccc-c----cccccccccccee---ccC-CCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH
Confidence 999 999 5 5799999999988 993 33222 67888 9999999999999999999999999999999999
Q ss_pred HHHHHhhC
Q 020883 279 IVESFAID 286 (320)
Q Consensus 279 ~V~~yA~d 286 (320)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-69 Score=508.16 Aligned_cols=228 Identities=27% Similarity=0.427 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHhcCCCCccchheeeeeccc-------CCCCCceeecCCCCCCCcCcCCCCCCCcc-hHHHHHHHHHHHH
Q 020883 39 KIILDAVRNASMHDPKVPARILRMFFHDCF-------IRGCDASVLLDSTPQNKAEKDGPPNISVR-SFYVIDDAKAELE 110 (320)
Q Consensus 39 ~iVr~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~le 110 (320)
+.++++|++ +.++|.++|.+|||+||||| ++||||||+++ +|+++++|.||+ ++++|+.||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-
Confidence 356777754 77889999999999999999 99999999984 699999999995 899999999986
Q ss_pred hhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCcccchhhccCc
Q 020883 111 KACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGH 190 (320)
Q Consensus 111 ~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaH 190 (320)
++|||||||+||||+||+.+|||.|+|++||+|++++... .+||+|+.+++++++.|+++|||++|||+|+|||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAH 160 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEE--GRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGH 160 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCcc--CCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccc
Confidence 4899999999999999999999999999999999998522 6899999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcC--Ccc--ccc
Q 020883 191 TLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGS 266 (320)
Q Consensus 191 TiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~--~gl--L~S 266 (320)
|||++||. |+ +|.| ++ ..||.+|||+||++++.+ +|+ |+|
T Consensus 161 TiG~ahc~----r~-g~~g------------------------~~-------~~Tp~~FDN~Yy~~ll~~~~~gll~L~S 204 (289)
T PLN02608 161 TLGRAHPE----RS-GFDG------------------------PW-------TKEPLKFDNSYFVELLKGESEGLLKLPT 204 (289)
T ss_pred cccccccc----CC-CCCC------------------------CC-------CCCCCccChHHHHHHHcCCcCCcccccc
Confidence 99999995 54 3322 01 258999999999999999 788 799
Q ss_pred ccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCC--CCcccccC
Q 020883 267 DQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIE--NGEVRLKC 316 (320)
Q Consensus 267 D~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t--~GeiR~~C 316 (320)
||+|+.|++|+++|++||.|++.|+++|++||+||++|+|+| +||+.+.-
T Consensus 205 D~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 205 DKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred CHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 999999999999999999999999999999999999999999 99998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.1e-67 Score=490.97 Aligned_cols=228 Identities=24% Similarity=0.360 Sum_probs=207.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCccchheeeeecccCCCCCceeecCCC---CCCCcCcCCCCCCCc-chHHHHHHHHHHHHh
Q 020883 36 QAEKIILDAVRNASMHDPKVPARILRMFFHDCFIRGCDASVLLDST---PQNKAEKDGPPNISV-RSFYVIDDAKAELEK 111 (320)
Q Consensus 36 ~~e~iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~GcDgSill~~~---~~~~~E~~~~~N~~L-~g~~~Id~iK~~le~ 111 (320)
..++||+++|++.+. +++++|++|||+||||| +||+|+++++. ..+.+|+++++|.+| ++|++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 456799999999999 99999999999999999 48888877543 223479999999999 7999999999976
Q ss_pred hCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccC-CCCCCCCCCHHHHHHHHHHcCCCcccchhhccCc
Q 020883 112 ACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASET-RSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGH 190 (320)
Q Consensus 112 ~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaH 190 (320)
| +||||||||||||+||+.+|||.|+|++||||++++....+ .+||.|+.+++++++.|+++|||++|||+|+|||
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaH 162 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAH 162 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccc
Confidence 4 89999999999999999999999999999999999987666 7899999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcCCc--------
Q 020883 191 TLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKG-------- 262 (320)
Q Consensus 191 TiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~g-------- 262 (320)
|||++||.. ++|.|. |..||.+|||+||++|+.++|
T Consensus 163 TiG~a~c~~-----~~~~g~-------------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 163 TLGRCHKER-----SGYDGP-------------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred eeecccccC-----CCCCCC-------------------------------CCCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 999999953 233221 125899999999999999999
Q ss_pred ccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCC
Q 020883 263 VFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII 307 (320)
Q Consensus 263 lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 307 (320)
+|+||++|+.|++|+++|++||.|+++|+++|++||+||+++||.
T Consensus 207 ~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 207 MLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred echhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2e-66 Score=481.06 Aligned_cols=231 Identities=29% Similarity=0.464 Sum_probs=206.9
Q ss_pred cchhhcC--CccHHHHHHHHHHHHHhcCCCCccchheeeee-----cccCC--CCCceeecCCCCCCCcCcCCCCCCCc-
Q 020883 27 AHYYDQT--CPQAEKIILDAVRNASMHDPKVPARILRMFFH-----DCFIR--GCDASVLLDSTPQNKAEKDGPPNISV- 96 (320)
Q Consensus 27 ~~fY~~s--CP~~e~iVr~~v~~~~~~~~~~aa~llRL~FH-----Dcfv~--GcDgSill~~~~~~~~E~~~~~N~~L- 96 (320)
.+||..+ |+++++.++..+++.+ .+++++|.||||+|| ||+++ ||||||.. .+|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 3566644 7888999999999987 778999999999999 88887 99999944 379999999999
Q ss_pred chHHHHHHHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHH-
Q 020883 97 RSFYVIDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQ- 175 (320)
Q Consensus 97 ~g~~~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~- 175 (320)
++|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++... .+||.|+.++++|++.|++
T Consensus 76 ~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~--~~lP~p~~~~~~l~~~F~~~ 148 (250)
T PLN02364 76 IALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE--GRLPDATKGCDHLRDVFAKQ 148 (250)
T ss_pred HHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc--CCCCCCCcCHHHHHHHHHHh
Confidence 7999999999987 5899999999999999999999999999999999998532 6799999999999999997
Q ss_pred cCCCcccchhhccCccccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHH
Q 020883 176 RGLGVQDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYK 255 (320)
Q Consensus 176 ~Glt~~dlVaLsGaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~ 255 (320)
+|||++|||+|+||||||++||. |+ +|.|. + ..||.+|||+||+
T Consensus 149 ~Gl~~~d~VaLsGaHTiG~~hc~----r~-~~~g~------------------------~-------~~tp~~fDn~Yy~ 192 (250)
T PLN02364 149 MGLSDKDIVALSGAHTLGRCHKD----RS-GFEGA------------------------W-------TSNPLIFDNSYFK 192 (250)
T ss_pred cCCCHHHheeeecceeeccccCC----CC-CCCCC------------------------C-------CCCCCccchHHHH
Confidence 59999999999999999999993 43 33221 1 2589999999999
Q ss_pred HhhcC--Ccccc--cccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCC
Q 020883 256 QLTVG--KGVFG--SDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII 307 (320)
Q Consensus 256 ~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 307 (320)
+|+.+ +|+|. |||+|+.|++|+.+|+.||.|++.|+++|++||+||++||+.
T Consensus 193 ~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 193 ELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999 89875 999999999999999999999999999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7.1e-65 Score=485.21 Aligned_cols=236 Identities=28% Similarity=0.363 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHhcCC---CCccchheeeeecccC------------CCCCceeecCCCCCCCcCcCCCCCCCcchHHH
Q 020883 37 AEKIILDAVRNASMHDP---KVPARILRMFFHDCFI------------RGCDASVLLDSTPQNKAEKDGPPNISVRSFYV 101 (320)
Q Consensus 37 ~e~iVr~~v~~~~~~~~---~~aa~llRL~FHDcfv------------~GcDgSill~~~~~~~~E~~~~~N~~L~g~~~ 101 (320)
++..|+++|++.+..+. ..|+.+|||+||||++ +|||||||++.+ .|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~gL~--~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIGLD--EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCCHH--HH
Confidence 47789999999998553 5677799999999996 899999999854 699999999998 99
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhhhhHHhh-cCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCc
Q 020883 102 IDDAKAELEKACPHTVSCADIIAIASRDVVTM-SGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGV 180 (320)
Q Consensus 102 Id~iK~~le~~cp~~VScADilalAardAV~~-~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~ 180 (320)
|+.||..+|+.| ||||||||||||+||+. +|||.|+|++||+|++++... .+||.|+.++++|++.|+++||+.
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~--g~LP~p~~sv~~l~~~F~~~Gf~~ 164 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD--GLVPEPFDSVDKILARFADAGFSP 164 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc--cCCCCCCCCHHHHHHHHHHcCCCH
Confidence 999999999998 99999999999999995 699999999999999988532 679999999999999999999999
Q ss_pred ccchhhccCccccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhh-c
Q 020883 181 QDLVALSGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLT-V 259 (320)
Q Consensus 181 ~dlVaLsGaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~-~ 259 (320)
+|||+|+||||||++|. .||+++ .+++| .||.+|||+||++++ .
T Consensus 165 ~E~VaLsGAHTiG~a~~---------------~Dps~~-------------------g~p~D-~TP~~FDn~Yf~~ll~~ 209 (328)
T cd00692 165 DELVALLAAHSVAAQDF---------------VDPSIA-------------------GTPFD-STPGVFDTQFFIETLLK 209 (328)
T ss_pred HHHhhhcccccccccCC---------------CCCCCC-------------------CCCCC-CCcchhcHHHHHHHHHc
Confidence 99999999999999982 467664 14566 599999999999987 5
Q ss_pred CCc-------------------ccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCcccccCcCCC
Q 020883 260 GKG-------------------VFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGIIENGEVRLKCGVVN 320 (320)
Q Consensus 260 ~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t~GeiR~~C~~~n 320 (320)
+++ +|+||++|+.|++|+.+|++||+||++|+++|++||+||++|||. +....+|+.|+
T Consensus 210 ~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~--~~~l~dcs~v~ 287 (328)
T cd00692 210 GTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD--NISLTDCSDVI 287 (328)
T ss_pred CCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC--cchhccCcccC
Confidence 555 499999999999999999999999999999999999999999997 44778999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=3.2e-64 Score=465.74 Aligned_cols=219 Identities=28% Similarity=0.417 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHhcCCCCccchheeeeeccc-------CCCCCceeecCCCCCCCcCcCCCCCCCcc-hHHHHHHHHHHHH
Q 020883 39 KIILDAVRNASMHDPKVPARILRMFFHDCF-------IRGCDASVLLDSTPQNKAEKDGPPNISVR-SFYVIDDAKAELE 110 (320)
Q Consensus 39 ~iVr~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~~~~N~~L~-g~~~Id~iK~~le 110 (320)
+-++..+.+.+ ++...+|.+|||+||||. .+||||||.+. .|+++++|.||+ ++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc-
Confidence 34577888876 456999999999999995 48999999863 699999999999 899999999987
Q ss_pred hhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCcccchhhccCc
Q 020883 111 KACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSGGH 190 (320)
Q Consensus 111 ~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaH 190 (320)
++|||||||+||||+||+.+|||.|+|++||+|+.++.. ..+||.|+.++++|++.|++|||+++|||||||||
T Consensus 90 ----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~--~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaH 163 (251)
T PLN02879 90 ----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP--EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGH 163 (251)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc--ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccc
Confidence 489999999999999999999999999999999998742 26899999999999999999999999999999999
Q ss_pred cccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcC--Ccc--ccc
Q 020883 191 TLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVG--KGV--FGS 266 (320)
Q Consensus 191 TiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~--~gl--L~S 266 (320)
|||++||. | ++|.|. | +.||.+|||+||++|+.+ +|+ |+|
T Consensus 164 TiG~ah~~----r-~g~~g~------------------------~-------d~tp~~FDN~Yy~~ll~~~~~gll~L~S 207 (251)
T PLN02879 164 TLGRCHKE----R-SGFEGA------------------------W-------TPNPLIFDNSYFKEILSGEKEGLLQLPT 207 (251)
T ss_pred cccccccc----c-ccCCCC------------------------C-------CCCccceeHHHHHHHHcCCcCCCccchh
Confidence 99999996 3 333221 1 258999999999999999 888 679
Q ss_pred ccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCC
Q 020883 267 DQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVGII 307 (320)
Q Consensus 267 D~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 307 (320)
|++|+.|++|+++|++||.||++|+++|++||+||++||+.
T Consensus 208 D~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 208 DKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=7.4e-60 Score=439.11 Aligned_cols=222 Identities=32% Similarity=0.471 Sum_probs=204.7
Q ss_pred HHHHHHHHHHhcCCCCccchheeeeecccCC--------CCCceeecCCCCCCCcCcCCCCCCCc-chHHHHHHHHHHHH
Q 020883 40 IILDAVRNASMHDPKVPARILRMFFHDCFIR--------GCDASVLLDSTPQNKAEKDGPPNISV-RSFYVIDDAKAELE 110 (320)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDcfv~--------GcDgSill~~~~~~~~E~~~~~N~~L-~g~~~Id~iK~~le 110 (320)
.|+..|++.+.+++..++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||+++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~------~e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE------PELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc------ccccCcccccHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999996 999999997 39999999996 79999999999999
Q ss_pred hhCCCCCCHHHHHHHhhhhHHhhc--CCCcccccCCCcCCCCCC--cccC-CCCCCCCCCHHHHHHHHHHcCCCcccchh
Q 020883 111 KACPHTVSCADIIAIASRDVVTMS--GGPYWNVLKGRKDGRVSK--ASET-RSLPAPTFNVTQLIQSFAQRGLGVQDLVA 185 (320)
Q Consensus 111 ~~cp~~VScADilalAardAV~~~--GGP~~~v~~GRrD~~~s~--~~~~-~~lP~p~~~~~~l~~~F~~~Glt~~dlVa 185 (320)
. |++|||||||++|+++||+.+ |||.|+|++||+|++.+. ...+ ..+|.|..+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 2234 67888889999999999999999999999
Q ss_pred hc-cCccc-cccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcCC--
Q 020883 186 LS-GGHTL-GFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGK-- 261 (320)
Q Consensus 186 Ls-GaHTi-G~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~-- 261 (320)
|+ ||||| |++||..+..|+ | .+|+.||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~------------------------~----------~~~~~tp~~fDN~yy~~l~~~~~~ 199 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG------------------------S----------GLWTSTPFTFDNAYFKNLLDMNWE 199 (255)
T ss_pred hccCCeeccCcccCCCCCccc------------------------C----------CCCCCCCCccchHHHHHHhcCCcc
Confidence 99 99999 999998776653 2 1245799999999999999998
Q ss_pred --------------cccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhc
Q 020883 262 --------------GVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGN 303 (320)
Q Consensus 262 --------------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 303 (320)
++|+||++|+.|++|+.+|++||.|+++|+++|++||+||++
T Consensus 200 ~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 200 WRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999975
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.1e-56 Score=435.60 Aligned_cols=253 Identities=19% Similarity=0.240 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHhcC--------CCCccchheeeeecccC-------CCCC-ceeecCCCCCCCcCcCCCCCCCcc-hHHH
Q 020883 39 KIILDAVRNASMHD--------PKVPARILRMFFHDCFI-------RGCD-ASVLLDSTPQNKAEKDGPPNISVR-SFYV 101 (320)
Q Consensus 39 ~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~N~~L~-g~~~ 101 (320)
+.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+. +|++++.|.+|. ...+
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~~ 118 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARRL 118 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHHH
Confidence 67899999999865 37999999999999975 7996 788764 799999999997 6899
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCc----------------------------
Q 020883 102 IDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKA---------------------------- 153 (320)
Q Consensus 102 Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~---------------------------- 153 (320)
++.||+++ |..||+||+|+||+..||+.+|||.|++..||.|...+..
T Consensus 119 L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a 194 (409)
T cd00649 119 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAA 194 (409)
T ss_pred HHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhh
Confidence 99999986 4579999999999999999999999999999999975432
Q ss_pred ----------ccCCCCCCCCCCHHHHHHHHHHcCCCcccchhh-ccCccccccccCccccccccCCCCCCCCCCCCHHHH
Q 020883 154 ----------SETRSLPAPTFNVTQLIQSFAQRGLGVQDLVAL-SGGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFA 222 (320)
Q Consensus 154 ----------~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaL-sGaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~ 222 (320)
..+..||+|..++.+|++.|++||||++||||| +||||||++||..|.+||. +||.+++.|+
T Consensus 195 ~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~~ 267 (409)
T cd00649 195 VQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIEQ 267 (409)
T ss_pred hhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHHH
Confidence 111379999999999999999999999999999 5999999999999999982 6999999999
Q ss_pred HHHH--hcCCCCCCC-CCCCCcC---CCCCCccChHHHHHhhc------------------------------------C
Q 020883 223 EKLR--SKCPKPNKD-RNAGQFL---DSTSSAFDNNYYKQLTV------------------------------------G 260 (320)
Q Consensus 223 ~~L~--~~Cp~~~~~-~~~~~~d---~~tp~~FDN~Yy~~l~~------------------------------------~ 260 (320)
+.|+ ..||.+.+. +....+| +.||.+|||+||++|+. +
T Consensus 268 ~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~ 347 (409)
T cd00649 268 QGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHA 347 (409)
T ss_pred HhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccC
Confidence 9996 899975332 2345677 58999999999999998 5
Q ss_pred CcccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHH--hcCCCCC
Q 020883 261 KGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKL--GNVGIIE 308 (320)
Q Consensus 261 ~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~t 308 (320)
+|||+||++|+.|++++++|++||+|++.||++|++||+|| +.+|+++
T Consensus 348 ~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~ 397 (409)
T cd00649 348 PMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKS 397 (409)
T ss_pred cccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchh
Confidence 69999999999999999999999999999999999999999 6899988
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.3e-54 Score=442.90 Aligned_cols=253 Identities=19% Similarity=0.229 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHhcC--------CCCccchheeeeecccC-------CCC-CceeecCCCCCCCcCcCCCCCCCcc-hHHH
Q 020883 39 KIILDAVRNASMHD--------PKVPARILRMFFHDCFI-------RGC-DASVLLDSTPQNKAEKDGPPNISVR-SFYV 101 (320)
Q Consensus 39 ~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~Gc-DgSill~~~~~~~~E~~~~~N~~L~-g~~~ 101 (320)
+.|+++|++.+... ...+|.+|||+||++.+ +|| .|+|.+. +|++++.|.+|. .+.+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhHHHHHHH
Confidence 46899999999875 37899999999999975 788 4778764 799999999997 6899
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCC---------------c-------------
Q 020883 102 IDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSK---------------A------------- 153 (320)
Q Consensus 102 Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~---------------~------------- 153 (320)
++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+. .
T Consensus 129 L~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~ 204 (716)
T TIGR00198 129 LWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAAT 204 (716)
T ss_pred HHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhh
Confidence 9999985 8999999999999999999999999999999999994321 0
Q ss_pred ---------ccCCCCCCCCCCHHHHHHHHHHcCCCcccchhhc-cCccccccccCccccccccCCCCCCCCCCCCHHHHH
Q 020883 154 ---------SETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALS-GGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAE 223 (320)
Q Consensus 154 ---------~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~ 223 (320)
..+..+|+|..++++|++.|++||||++|||||+ ||||||++||.+|.+|| ++||++++.|++
T Consensus 205 ~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~~~ 277 (716)
T TIGR00198 205 EMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIEEQ 277 (716)
T ss_pred hccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHHHHH
Confidence 1113699999999999999999999999999996 99999999999999997 379999999999
Q ss_pred HHHhcCCCCC--C-CCCCCCcC---CCCCCccChHHHHHhhcC----------------------------------Ccc
Q 020883 224 KLRSKCPKPN--K-DRNAGQFL---DSTSSAFDNNYYKQLTVG----------------------------------KGV 263 (320)
Q Consensus 224 ~L~~~Cp~~~--~-~~~~~~~d---~~tp~~FDN~Yy~~l~~~----------------------------------~gl 263 (320)
.|+..||.+. + .+....+| +.||.+|||+||+||+.+ +++
T Consensus 278 gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~m 357 (716)
T TIGR00198 278 GLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIM 357 (716)
T ss_pred HhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCc
Confidence 9999998532 1 22245666 689999999999999975 689
Q ss_pred cccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHh--cCCCCC
Q 020883 264 FGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLG--NVGIIE 308 (320)
Q Consensus 264 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~t 308 (320)
|+||++|..|++++++|++||.|++.|+++|++||+||+ .+|++.
T Consensus 358 L~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 358 LDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred cchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 999999999999999999999999999999999999998 566654
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.9e-50 Score=412.10 Aligned_cols=253 Identities=18% Similarity=0.230 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHhcC--------CCCccchheeeeecccC-------CCCC-ceeecCCCCCCCcCcCCCCCCCcc-hHHH
Q 020883 39 KIILDAVRNASMHD--------PKVPARILRMFFHDCFI-------RGCD-ASVLLDSTPQNKAEKDGPPNISVR-SFYV 101 (320)
Q Consensus 39 ~iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcD-gSill~~~~~~~~E~~~~~N~~L~-g~~~ 101 (320)
+.|+++|++.+... ...+|.+|||+||++.+ +||+ |+|.+. +|.+++.|.+|. +..+
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~------pe~~w~~N~gL~ka~~~ 130 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA------PLNSWPDNVNLDKARRL 130 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc------ccccchhhhhHHHHHHH
Confidence 57999999999865 37999999999999975 7986 778664 799999999997 6899
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcc---------------------------
Q 020883 102 IDDAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKAS--------------------------- 154 (320)
Q Consensus 102 Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~--------------------------- 154 (320)
++.||+++ |..||+||+|+||+..|||.+|||.|++..||.|...+...
T Consensus 131 L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~ 206 (726)
T PRK15061 131 LWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLA 206 (726)
T ss_pred HHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchh
Confidence 99999987 45799999999999999999999999999999998654321
Q ss_pred ------------cCCCCCCCCCCHHHHHHHHHHcCCCcccchhhc-cCccccccccCccccccccCCCCCCCCCCCCHHH
Q 020883 155 ------------ETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALS-GGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDF 221 (320)
Q Consensus 155 ------------~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~ 221 (320)
.+..+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+|| ++||.+++.+
T Consensus 207 a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~~~ 279 (726)
T PRK15061 207 AVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAPIE 279 (726)
T ss_pred hhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CCCCCcCHHH
Confidence 112379999999999999999999999999995 99999999999999997 3799999999
Q ss_pred HHHHH--hcCCCCCCC-CCCCCcC---CCCCCccChHHHHHhhcC-----------------------------------
Q 020883 222 AEKLR--SKCPKPNKD-RNAGQFL---DSTSSAFDNNYYKQLTVG----------------------------------- 260 (320)
Q Consensus 222 ~~~L~--~~Cp~~~~~-~~~~~~d---~~tp~~FDN~Yy~~l~~~----------------------------------- 260 (320)
++.|. +.||.+.+. +.+..+| +.||++|||+||++|+.+
T Consensus 280 ~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~ 359 (726)
T PRK15061 280 EQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKH 359 (726)
T ss_pred HHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCccccccccc
Confidence 99985 899975332 2345676 689999999999999984
Q ss_pred -CcccccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhc--CCCCC
Q 020883 261 -KGVFGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGN--VGIIE 308 (320)
Q Consensus 261 -~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~t 308 (320)
.+||+||++|..||+++++|++||+|+++|+++|++||+||++ +|+++
T Consensus 360 ~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 360 APTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred CcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchh
Confidence 5899999999999999999999999999999999999999954 77665
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=1.2e-50 Score=375.16 Aligned_cols=217 Identities=25% Similarity=0.351 Sum_probs=178.8
Q ss_pred HHHHHHHhcCCCCccchheeeeeccc-------CCCCCceeecCCCCCCCcCcC-CCCCCCcchHHHHHHHHHHHHhhCC
Q 020883 43 DAVRNASMHDPKVPARILRMFFHDCF-------IRGCDASVLLDSTPQNKAEKD-GPPNISVRSFYVIDDAKAELEKACP 114 (320)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcf-------v~GcDgSill~~~~~~~~E~~-~~~N~~L~g~~~Id~iK~~le~~cp 114 (320)
..-......+++++|+||||+||||| ++||||||+++.. .+|+. .+.|.+|++|+.|+.+
T Consensus 29 ~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~--------- 96 (264)
T cd08201 29 PCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP--------- 96 (264)
T ss_pred cccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhhccccceeeccC---------
Confidence 33334455789999999999999999 8999999999843 46777 5667788888887553
Q ss_pred CCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCcccCCCCCCCCCCHHHHHHHHHHcCCCcccchhhcc-Ccccc
Q 020883 115 HTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKASETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALSG-GHTLG 193 (320)
Q Consensus 115 ~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLsG-aHTiG 193 (320)
+||||||||||||+||+.+|||.|+|++||+|++++... .||.|+.++++|++.|++|||+++|||+||| |||||
T Consensus 97 -~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG 172 (264)
T cd08201 97 -RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLG 172 (264)
T ss_pred -ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeee
Confidence 599999999999999999999999999999999987642 4999999999999999999999999999995 99999
Q ss_pred ccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccChHHHHHhhcCCc----------c
Q 020883 194 FSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFDNNYYKQLTVGKG----------V 263 (320)
Q Consensus 194 ~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FDN~Yy~~l~~~~g----------l 263 (320)
++||..|.++.- |. ...+...++| .||.+|||+||.+++.+.. -
T Consensus 173 ~ahc~~f~~~~~---------~g----------------~~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~ 226 (264)
T cd08201 173 GVHSEDFPEIVP---------PG----------------SVPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNT 226 (264)
T ss_pred ecccccchhhcC---------Cc----------------cccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCC
Confidence 999998765531 10 0000133455 5999999999999998742 3
Q ss_pred cccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhc
Q 020883 264 FGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGN 303 (320)
Q Consensus 264 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 303 (320)
+.||..+++... ...++..| ++..|.+.++..|.||.+
T Consensus 227 ~~sd~r~f~~d~-n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 227 TNSDLRIFSSDG-NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred ccchhhheecCc-cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 579999987654 45678887 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.9e-39 Score=302.79 Aligned_cols=219 Identities=18% Similarity=0.218 Sum_probs=178.8
Q ss_pred HHHHHHHhcCCCCccchheeeeecccC-------CCCCce-eecCCCCCCCcCcCCCCCCC--cc-hHHHHHHHHHHHHh
Q 020883 43 DAVRNASMHDPKVPARILRMFFHDCFI-------RGCDAS-VLLDSTPQNKAEKDGPPNIS--VR-SFYVIDDAKAELEK 111 (320)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--L~-g~~~Id~iK~~le~ 111 (320)
+.+++.+.......+.||||+||++.+ +|++|+ |.+ .+|++++.|.+ |. .+.++++||+++..
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 567777778788899999999999975 899999 655 47999999998 86 68999999998742
Q ss_pred h-CCC-CCCHHHHHHHhhhhHHhhcCC-----CcccccCCCcCCCCCCcccC---CCCCCCC------------CCHHHH
Q 020883 112 A-CPH-TVSCADIIAIASRDVVTMSGG-----PYWNVLKGRKDGRVSKASET---RSLPAPT------------FNVTQL 169 (320)
Q Consensus 112 ~-cp~-~VScADilalAardAV~~~GG-----P~~~v~~GRrD~~~s~~~~~---~~lP~p~------------~~~~~l 169 (320)
. -++ .||+||+|+||+..|||.+|| |.+++.+||.|.+.+..... ..+|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 1 111 699999999999999999999 99999999999987643211 1235332 234789
Q ss_pred HHHHHHcCCCcccchhhccCc-cccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCc
Q 020883 170 IQSFAQRGLGVQDLVALSGGH-TLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSA 248 (320)
Q Consensus 170 ~~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~ 248 (320)
++.|.++|||++|||||+||| ++|..|..+ +.| .| +.+|.+
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G------------------------~w-------T~~p~~ 212 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG------------------------VF-------TDRPGV 212 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCC-------CCC------------------------CC-------cCCCCc
Confidence 999999999999999999997 699887432 111 12 458999
Q ss_pred cChHHHHHhhcC--------------------Cc-----ccccccccccCcchHHHHHHHhhC--HHHHHHHHHHHHHHH
Q 020883 249 FDNNYYKQLTVG--------------------KG-----VFGSDQSLFGDFRTKWIVESFAID--QGLFFKEFVNSMVKL 301 (320)
Q Consensus 249 FDN~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 301 (320)
|||.||++|+.. .| .+.+|.+|.+|+++|++|+.||.| +++||+||++||.||
T Consensus 213 f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Kl 292 (297)
T cd08200 213 LTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKV 292 (297)
T ss_pred cccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 999999999951 01 267899999999999999999998 999999999999999
Q ss_pred hcCC
Q 020883 302 GNVG 305 (320)
Q Consensus 302 ~~lg 305 (320)
.++.
T Consensus 293 meld 296 (297)
T cd08200 293 MNLD 296 (297)
T ss_pred HhcC
Confidence 9874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=5.2e-34 Score=293.17 Aligned_cols=219 Identities=20% Similarity=0.259 Sum_probs=175.7
Q ss_pred HHHHHHHHH---HhcCCCCccchheeeeecccC-------CCCCce-eecCCCCCCCcCcCCCCC--CCcc-hHHHHHHH
Q 020883 40 IILDAVRNA---SMHDPKVPARILRMFFHDCFI-------RGCDAS-VLLDSTPQNKAEKDGPPN--ISVR-SFYVIDDA 105 (320)
Q Consensus 40 iVr~~v~~~---~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N--~~L~-g~~~Id~i 105 (320)
+|+++|++. +....-..+.|||++||++.+ +|++|+ |.+. +|++++.| .+|. .+++++.|
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~I 502 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEKI 502 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHHH
Confidence 456666664 455667889999999999975 899998 7664 79999999 7886 68999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHhhhhHHhhc---CCC--cccccCCCcCCCCCCcccCCCCC-----C----------CCCC
Q 020883 106 KAELEKACPHTVSCADIIAIASRDVVTMS---GGP--YWNVLKGRKDGRVSKASETRSLP-----A----------PTFN 165 (320)
Q Consensus 106 K~~le~~cp~~VScADilalAardAV~~~---GGP--~~~v~~GRrD~~~s~~~~~~~lP-----~----------p~~~ 165 (320)
|++... ..||.||+|+||+..|||.+ ||| .+++.+||.|.+..........| + ....
T Consensus 503 k~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~ 579 (716)
T TIGR00198 503 QAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTP 579 (716)
T ss_pred HHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCH
Confidence 998742 26999999999999999998 898 57899999999876432112222 1 1223
Q ss_pred HHHHHHHHHHcCCCcccchhhccC-ccccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCC
Q 020883 166 VTQLIQSFAQRGLGVQDLVALSGG-HTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDS 244 (320)
Q Consensus 166 ~~~l~~~F~~~Glt~~dlVaLsGa-HTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~ 244 (320)
...|++.|.++|||++|||||+|| |++|+.|..+ +.| .+ +.
T Consensus 580 ~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G------------------------~~-------T~ 621 (716)
T TIGR00198 580 EELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG------------------------VF-------TD 621 (716)
T ss_pred HHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC------------------------CC-------cC
Confidence 566899999999999999999999 5999998532 111 12 35
Q ss_pred CCCccChHHHHHhhcCC--------------------c---c--cccccccccCcchHHHHHHHhhCH--HHHHHHHHHH
Q 020883 245 TSSAFDNNYYKQLTVGK--------------------G---V--FGSDQSLFGDFRTKWIVESFAIDQ--GLFFKEFVNS 297 (320)
Q Consensus 245 tp~~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~Fa~A 297 (320)
+|.+|||.||++|+... | + ..+|.+|.+|++.|++|+.||.|+ ++|++||++|
T Consensus 622 ~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~A 701 (716)
T TIGR00198 622 RVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAA 701 (716)
T ss_pred CCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHH
Confidence 79999999999998621 1 2 267999999999999999999997 8999999999
Q ss_pred HHHHhcCC
Q 020883 298 MVKLGNVG 305 (320)
Q Consensus 298 m~Km~~lg 305 (320)
|.|+.+++
T Consensus 702 w~Klm~ld 709 (716)
T TIGR00198 702 WTKVMNLD 709 (716)
T ss_pred HHHHHhCC
Confidence 99999986
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2e-33 Score=287.49 Aligned_cols=219 Identities=19% Similarity=0.237 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCCCccchheeeeecccC-------CCCCce-eecCCCCCCCcCcCCCCCC--Ccc-hHHHHHHHHHHHHh
Q 020883 43 DAVRNASMHDPKVPARILRMFFHDCFI-------RGCDAS-VLLDSTPQNKAEKDGPPNI--SVR-SFYVIDDAKAELEK 111 (320)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~--~L~-g~~~Id~iK~~le~ 111 (320)
..+++.+....-..+.|||++||++.+ +|++|+ |.|. +|++++.|. +|. .+++++.||++...
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~ 515 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNA 515 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhh
Confidence 467777777778899999999999974 899998 8775 799999998 886 58999999999864
Q ss_pred hCC--CCCCHHHHHHHhhhhHHhhc---CC--CcccccCCCcCCCCCCcccC---CCCCCCC------------CCHHHH
Q 020883 112 ACP--HTVSCADIIAIASRDVVTMS---GG--PYWNVLKGRKDGRVSKASET---RSLPAPT------------FNVTQL 169 (320)
Q Consensus 112 ~cp--~~VScADilalAardAV~~~---GG--P~~~v~~GRrD~~~s~~~~~---~~lP~p~------------~~~~~l 169 (320)
.-. ..||.||+|+||+..|||.+ || |.+++..||.|.+....... ..+|.+. ...+.|
T Consensus 516 ~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 516 AQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred ccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHH
Confidence 321 25999999999999999998 68 99999999999987543211 1356543 124789
Q ss_pred HHHHHHcCCCcccchhhccCc-cccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCc
Q 020883 170 IQSFAQRGLGVQDLVALSGGH-TLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSA 248 (320)
Q Consensus 170 ~~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~ 248 (320)
++.|.++|||++|||||+||| ++|..|-.++ .| .+ +.+|.+
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~G------------------------~~-------T~~p~~ 637 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------HG------------------------VF-------TDRPGV 637 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC-------CC------------------------CC-------cCCCCc
Confidence 999999999999999999997 7888774320 11 12 357999
Q ss_pred cChHHHHHhhcC----------C----------c---c--cccccccccCcchHHHHHHHhhC--HHHHHHHHHHHHHHH
Q 020883 249 FDNNYYKQLTVG----------K----------G---V--FGSDQSLFGDFRTKWIVESFAID--QGLFFKEFVNSMVKL 301 (320)
Q Consensus 249 FDN~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 301 (320)
|||.||+||+.. . | + +.+|.+|.+|++.|++|+.||.| +++|++||++||.|+
T Consensus 638 fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kv 717 (726)
T PRK15061 638 LTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKV 717 (726)
T ss_pred cccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 999999999952 1 1 1 47899999999999999999999 999999999999999
Q ss_pred hcCC
Q 020883 302 GNVG 305 (320)
Q Consensus 302 ~~lg 305 (320)
.+++
T Consensus 718 meld 721 (726)
T PRK15061 718 MNLD 721 (726)
T ss_pred HhCC
Confidence 9986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=255.22 Aligned_cols=250 Identities=18% Similarity=0.211 Sum_probs=201.2
Q ss_pred HHHHHHHHHHhcC--------CCCccchheeeeecccC-------CCCCceeecCCCCCCCcCcCCCCCCCcc-hHHHHH
Q 020883 40 IILDAVRNASMHD--------PKVPARILRMFFHDCFI-------RGCDASVLLDSTPQNKAEKDGPPNISVR-SFYVID 103 (320)
Q Consensus 40 iVr~~v~~~~~~~--------~~~aa~llRL~FHDcfv-------~GcDgSill~~~~~~~~E~~~~~N~~L~-g~~~Id 103 (320)
.|+..++...... ...+|.+|||+||-+.+ +|..+ +..++.++.++|.|.+|+ ++.++.
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~-----G~qRFaPlnSWPDN~nLDKarRLLW 145 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGG-----GQQRFAPLNSWPDNANLDKARRLLW 145 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCC-----CceecccccCCCcccchHHHHHHhh
Confidence 5777788777764 25889999999999975 34433 223466888999999997 799999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHhhhhHHhhcCCCcccccCCCcCCCCCCc------------------------------
Q 020883 104 DAKAELEKACPHTVSCADIIAIASRDVVTMSGGPYWNVLKGRKDGRVSKA------------------------------ 153 (320)
Q Consensus 104 ~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~------------------------------ 153 (320)
.||+++ +..+|+||+++|++..|++.+|++.+.+..||.|-..+..
T Consensus 146 PIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaavq 221 (730)
T COG0376 146 PIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQ 221 (730)
T ss_pred hHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhe
Confidence 999987 6789999999999999999999999999999999877654
Q ss_pred --------ccCCCCCCCCCCHHHHHHHHHHcCCCcccchhhc-cCccccccccCccccccccCCCCCCCCCCCCHHHHHH
Q 020883 154 --------SETRSLPAPTFNVTQLIQSFAQRGLGVQDLVALS-GGHTLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEK 224 (320)
Q Consensus 154 --------~~~~~lP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~ 224 (320)
..++..|+|..+..+++..|++|+++++|.|||+ ||||+|.+|-..-.+- -+++|.-.+--.+.
T Consensus 222 MGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~-------vg~ePe~a~ie~qG 294 (730)
T COG0376 222 MGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASN-------VGPEPEAAPIEQQG 294 (730)
T ss_pred eeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhh-------cCCCccccchhhhc
Confidence 2235689999999999999999999999999999 6999999997642111 24677765555555
Q ss_pred HH--hcCCCCCCCCC----CCCcCCCCCCccChHHHHHhhcCC-----------------------------------cc
Q 020883 225 LR--SKCPKPNKDRN----AGQFLDSTSSAFDNNYYKQLTVGK-----------------------------------GV 263 (320)
Q Consensus 225 L~--~~Cp~~~~~~~----~~~~d~~tp~~FDN~Yy~~l~~~~-----------------------------------gl 263 (320)
|- ..|..+.+..+ ...-++.||++|||+||.+|+... .|
T Consensus 295 lGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~M 374 (730)
T COG0376 295 LGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMM 374 (730)
T ss_pred cccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCcee
Confidence 53 34544322211 223467799999999999998631 48
Q ss_pred cccccccccCcchHHHHHHHhhCHHHHHHHHHHHHHHHhcCC
Q 020883 264 FGSDQSLFGDFRTKWIVESFAIDQGLFFKEFVNSMVKLGNVG 305 (320)
Q Consensus 264 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 305 (320)
|++|.+|..||..+++.++|.+|++.|.+.|++||.||.+-.
T Consensus 375 lttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 375 LTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred eccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999997644
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.7e-11 Score=122.17 Aligned_cols=215 Identities=18% Similarity=0.264 Sum_probs=151.1
Q ss_pred HHHHHHHhcCCCCccchheeeeecccC-------CCCCce-eecCCCCCCCcCcCCCCCCC--cc-hHHHHHHHHHHHHh
Q 020883 43 DAVRNASMHDPKVPARILRMFFHDCFI-------RGCDAS-VLLDSTPQNKAEKDGPPNIS--VR-SFYVIDDAKAELEK 111 (320)
Q Consensus 43 ~~v~~~~~~~~~~aa~llRL~FHDcfv-------~GcDgS-ill~~~~~~~~E~~~~~N~~--L~-g~~~Id~iK~~le~ 111 (320)
..+++.+....-....|+-.+|-.+-+ +|.+|. |.|. +.|+++.|.. |. -+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 356667777777788888888887743 677776 5554 6889999964 43 3788888888875
Q ss_pred hCCCCCCHHHHHHHhhhhHHhhc---CCCc--ccccCCCcCCCCCCcccC-CCCCCC--------------CCCHHHHHH
Q 020883 112 ACPHTVSCADIIAIASRDVVTMS---GGPY--WNVLKGRKDGRVSKASET-RSLPAP--------------TFNVTQLIQ 171 (320)
Q Consensus 112 ~cp~~VScADilalAardAV~~~---GGP~--~~v~~GRrD~~~s~~~~~-~~lP~p--------------~~~~~~l~~ 171 (320)
..||.||+|+|++..+|+.+ +|-. +++..||.|.+....... ...-.| ...-.-|++
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 36999999999999999984 6665 466789999876543211 111111 112344677
Q ss_pred HHHHcCCCcccchhhccCc-cccccccCccccccccCCCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcCCCCCCccC
Q 020883 172 SFAQRGLGVQDLVALSGGH-TLGFSHCSSFEARLRNFSSLLDIDPSMDLDFAEKLRSKCPKPNKDRNAGQFLDSTSSAFD 250 (320)
Q Consensus 172 ~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~rl~~f~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~d~~tp~~FD 250 (320)
.=+-.+||..||++|+||- -+|.- |.|+ ...|. +..|..+.
T Consensus 602 kAqlL~LtapemtVLiGGlRvLg~n-----------~g~s-------------------------~~GVf--T~~pg~Lt 643 (730)
T COG0376 602 KAQLLTLTAPEMTVLIGGLRVLGAN-----------YGGS-------------------------KHGVF--TDRPGVLT 643 (730)
T ss_pred HHHHhccCCccceEEEcceEeeccC-----------CCCC-------------------------cccee--ccCccccc
Confidence 7778999999999999874 23321 2211 01121 22567777
Q ss_pred hHHHHHhhcC----------C----------cc-----cccccccccCcchHHHHHHHhhC--HHHHHHHHHHHHHHHhc
Q 020883 251 NNYYKQLTVG----------K----------GV-----FGSDQSLFGDFRTKWIVESFAID--QGLFFKEFVNSMVKLGN 303 (320)
Q Consensus 251 N~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~~ 303 (320)
|.||.||+.- + |- -..|..+-+++..|.+.+-||.| ++.|.+||..||.|..+
T Consensus 644 ndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn 723 (730)
T COG0376 644 NDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMN 723 (730)
T ss_pred chhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 7777777752 1 21 24788888899999999999975 78999999999999987
Q ss_pred CC
Q 020883 304 VG 305 (320)
Q Consensus 304 lg 305 (320)
+.
T Consensus 724 ~D 725 (730)
T COG0376 724 LD 725 (730)
T ss_pred cc
Confidence 64
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=52.05 E-value=1.1e+02 Score=30.04 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=28.8
Q ss_pred hcCCCcccccCCCcCCCCCCcccCCCCCC-CC---CCHHHHHHHHHHcCCCc
Q 020883 133 MSGGPYWNVLKGRKDGRVSKASETRSLPA-PT---FNVTQLIQSFAQRGLGV 180 (320)
Q Consensus 133 ~~GGP~~~v~~GRrD~~~s~~~~~~~lP~-p~---~~~~~l~~~F~~~Glt~ 180 (320)
.+|-..+..+.||-+...-........+. .. ..+.++.++|++.|+..
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 35778889999998654321111111221 22 24777888888888864
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=51.69 E-value=12 Score=29.13 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhcCCCCC
Q 020883 289 LFFKEFVNSMVKLGNVGIIE 308 (320)
Q Consensus 289 ~F~~~Fa~Am~Km~~lgv~t 308 (320)
...++|..||.||+.||...
T Consensus 2 ~m~~~F~~am~KlavLG~d~ 21 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDR 21 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-G
T ss_pred hHHHHHHHHHHHHHHhcCCh
Confidence 35689999999999998763
No 21
>PRK05269 transaldolase B; Provisional
Probab=41.21 E-value=1.9e+02 Score=28.25 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=67.2
Q ss_pred hhcCCCcccccCCCcCCCCCCcccCCCCC----CCCCCHHHHHHHHHHcCCCcccchhhccCccccccccCccccccc--
Q 020883 132 TMSGGPYWNVLKGRKDGRVSKASETRSLP----APTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEARLR-- 205 (320)
Q Consensus 132 ~~~GGP~~~v~~GRrD~~~s~~~~~~~lP----~p~~~~~~l~~~F~~~Glt~~dlVaLsGaHTiG~~hc~~f~~rl~-- 205 (320)
..+|-..+..+.||-|...-........+ ++-..+.++.+.|++.|+..+-|.| +|++..+
T Consensus 168 a~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~A-------------Sfrn~~~v~ 234 (318)
T PRK05269 168 AEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGA-------------SFRNTGQIL 234 (318)
T ss_pred HHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEee-------------ccCCHHHHH
Confidence 33588889999999875422110000011 1233578888899999997663332 2221110
Q ss_pred cCCCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCCCcC--CCCCCccChHHHHHhhcCCcccccccccccCcchHHHHHH
Q 020883 206 NFSSLLDIDPSMDLDFAEKLRSKC-PKPNKDRNAGQFL--DSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVES 282 (320)
Q Consensus 206 ~f~g~~~~dp~~d~~~~~~L~~~C-p~~~~~~~~~~~d--~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~ 282 (320)
...|... =+++|...+.|...- |... ...+.+ ...+..+|-..|+..++..+ ........-++.
T Consensus 235 ~laG~d~--vTi~p~ll~~l~~~~~~~~~---~l~~~~~~~~~~~~~~e~~f~~~~~~d~--------ma~ekl~egi~~ 301 (318)
T PRK05269 235 ELAGCDR--LTISPALLEELAASEGELER---KLSPPGEAKARPVPLTEAEFRWQHNEDA--------MATEKLAEGIRK 301 (318)
T ss_pred HHhCCCe--EECCHHHHHHHHhcCCCccc---cCCCccccccccccCCHHHHHHHhCccc--------chHHHHHHHHHH
Confidence 1111111 257788888887531 1110 000000 11245667777775443322 122334566777
Q ss_pred HhhCHHHHHH
Q 020883 283 FAIDQGLFFK 292 (320)
Q Consensus 283 yA~d~~~F~~ 292 (320)
|+.|+..-.+
T Consensus 302 F~~~~~~L~~ 311 (318)
T PRK05269 302 FAKDQEKLEK 311 (318)
T ss_pred HHHHHHHHHH
Confidence 7777654443
No 22
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.47 E-value=31 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCCCccchheeeeecc
Q 020883 40 IILDAVRNASMHDPKVPARILRMFFHDC 67 (320)
Q Consensus 40 iVr~~v~~~~~~~~~~aa~llRL~FHDc 67 (320)
|.|+.+++.+.++|.+-...||+.+---
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999987644
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=33.73 E-value=3.4e+02 Score=26.45 Aligned_cols=137 Identities=14% Similarity=0.134 Sum_probs=65.9
Q ss_pred hhcCCCcccccCCCcCCCCCCcccCCCCCC----CCCCHHHHHHHHHHcCCCcccchhhccCccccccccCccccccccC
Q 020883 132 TMSGGPYWNVLKGRKDGRVSKASETRSLPA----PTFNVTQLIQSFAQRGLGVQDLVALSGGHTLGFSHCSSFEARLRNF 207 (320)
Q Consensus 132 ~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~----p~~~~~~l~~~F~~~Glt~~dlVaLsGaHTiG~~hc~~f~~rl~~f 207 (320)
..+|-..+..+.||-|-..-........+. +-..+.++.+.|++.|+..+=|.|=. .+++... ..
T Consensus 166 a~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~Im~ASf--Rn~~qv~---------~l 234 (317)
T TIGR00874 166 AEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTEVMGASF--RNKEEIL---------AL 234 (317)
T ss_pred HHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcEEEeecc--CCHHHHH---------HH
Confidence 346888899999998663221110001111 23457778888888898754332210 0011100 00
Q ss_pred CCCCCCC-CCCCHHHHHHHHhcC-CCCCC-C-CCCCCcCCCCCCccChHHHHHhhcCCcccccccccccCcchHHHHHHH
Q 020883 208 SSLLDID-PSMDLDFAEKLRSKC-PKPNK-D-RNAGQFLDSTSSAFDNNYYKQLTVGKGVFGSDQSLFGDFRTKWIVESF 283 (320)
Q Consensus 208 ~g~~~~d-p~~d~~~~~~L~~~C-p~~~~-~-~~~~~~d~~tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~y 283 (320)
.| .| =+++|...+.|...- |-... . ...... ...|..+|...|+...+..++ .. ..+..-++.|
T Consensus 235 aG---~d~~Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~-~~~~~~~~e~~fr~~~~~d~m-------a~-ekl~~gir~F 302 (317)
T TIGR00874 235 AG---CDRLTISPALLDELKESTGPVERKLDPESAKKV-DKQPIILDESEFRFLHNEDAM-------AT-EKLAEGIRKF 302 (317)
T ss_pred HC---CCeEeCCHHHHHHHHhCCCCcCccCCccccccc-cccCCCCCHHHHHHHhCCCcc-------hH-HHHHHHHHHH
Confidence 11 11 246677777776532 11000 0 000000 113456788888754433221 11 2345667888
Q ss_pred hhCHHHHH
Q 020883 284 AIDQGLFF 291 (320)
Q Consensus 284 A~d~~~F~ 291 (320)
+.|+..-.
T Consensus 303 ~~d~~~Le 310 (317)
T TIGR00874 303 AADQEKLE 310 (317)
T ss_pred HHHHHHHH
Confidence 88776543
No 24
>PRK12346 transaldolase A; Provisional
Probab=22.07 E-value=71 Score=31.16 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=36.9
Q ss_pred CCHHHHHHHhhhhHH--hhcCCCcccccCCCcCCCCCCcccCCCCCCC----CCCHHHHHHHHHHcCCCcc
Q 020883 117 VSCADIIAIASRDVV--TMSGGPYWNVLKGRKDGRVSKASETRSLPAP----TFNVTQLIQSFAQRGLGVQ 181 (320)
Q Consensus 117 VScADilalAardAV--~~~GGP~~~v~~GRrD~~~s~~~~~~~lP~p----~~~~~~l~~~F~~~Glt~~ 181 (320)
|+|-=-+.+....|+ ..+|-..+..+.||-|-..........++.. -..+.++.++|++.|+..+
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 444444444444333 3468888999999988643221111112221 2347778888888887643
No 25
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=20.03 E-value=40 Score=27.20 Aligned_cols=14 Identities=43% Similarity=1.303 Sum_probs=9.3
Q ss_pred eeecccCCCCCceee
Q 020883 63 FFHDCFIRGCDASVL 77 (320)
Q Consensus 63 ~FHDcfv~GcDgSil 77 (320)
.+|+|| +||.|++.
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 479997 79999886
Done!