BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020884
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZ45|Y1686_ARATH Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana
GN=At1g16860 PE=1 SV=1
Length = 474
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/296 (75%), Positives = 252/296 (85%), Gaps = 7/296 (2%)
Query: 1 MGSRYPSHQLSNGLFVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMFDIPMDSAK 60
MGSRYPSHQLSNGLFVSGRPEQPKE+APTMS+VAMPYTGGDIK+SGELGKMFDIP D K
Sbjct: 1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60
Query: 61 SRKSGPITGAPSRTGSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKKTNSGPL 120
SRKSGPI GAPSR+GSFAG A P A GR +SG ++S G S SMKKTNSGPL
Sbjct: 61 SRKSGPIPGAPSRSGSFAGTAQSGPGAPMATGR----MSGSLASAG--SVSMKKTNSGPL 114
Query: 121 NKHGEPIKKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLD 180
+KHGEP+KKSSGPQSGG TRQNSG IP LPATGLITSGPI+SGPLNSSGAPRK+SG LD
Sbjct: 115 SKHGEPLKKSSGPQSGGVTRQNSGSIP-ILPATGLITSGPITSGPLNSSGAPRKVSGPLD 173
Query: 181 SSGSIKMNSSSIAQNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVH 240
SSG +K + ++ NQAVTT+ EDD+S K+FPKPVLWLV+LIF+MGF+AGGFILGAVH
Sbjct: 174 SSGLMKSHMPTVVHNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGFILGAVH 233
Query: 241 NPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKVTGV 296
NPILL+VV +LF V+AA+FIWN CWGR+ ITDFI+ +PD DLRTAK+GQ VKVTGV
Sbjct: 234 NPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGV 289
>sp|P96989|OMPB_RICTY Outer membrane protein B OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=ompB PE=1 SV=1
Length = 1645
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 74 TGSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKKTNSGPLNKHGEPIKKSSGP 133
TG+F G A ++G N AG +N +G + SG ++ TN + G I + SG
Sbjct: 418 TGNFIGDAKNNG---NTAGVITFNANGTLVSGNT-DPNIVVTNIKAIEVEGAGIVQLSGI 473
Query: 134 QSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLDSSGSIKMNSSSIA 193
N+G I A G + +GP++ PL ++ A S LD S I + + A
Sbjct: 474 HGAELRLGNAGSIFK--LADGTVINGPVNQNPLVNNNALAAGSIQLDGSAIITGDIGNGA 531
Query: 194 QNQAVTTITQEDDYS 208
N A+ IT +D S
Sbjct: 532 VNAALQDITLANDAS 546
>sp|Q8IX21|F178A_HUMAN Protein FAM178A OS=Homo sapiens GN=FAM178A PE=1 SV=2
Length = 1173
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 28/198 (14%)
Query: 15 FVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMFDIPMDSAKSRKSGPITGAPSRT 74
F+ RP+ P +K + +A+ T GD+ + ++ K P D +G APS +
Sbjct: 360 FLEKRPDGPHQKEKFIKHIALK-TPGDVLRLEDISKE---PSDETDGSSAGL---APSNS 412
Query: 75 GSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKKTNSGPLNKHGEPIKKSSGPQ 134
G+ +T + S I G + M+K + PL++ IKK+S Q
Sbjct: 413 GNSGHHSTRN--------------SDQIQVAGTKETKMQKPHL-PLSQEKSAIKKASNLQ 457
Query: 135 SGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLDSSGSIKMNSSSIAQ 194
+ LP + S S PLN+ +L S K SSS
Sbjct: 458 KNKTASSTTKEKETKLPLLSRVPSAGSSLVPLNAKNC------ALPVSKKDKERSSSKEC 511
Query: 195 NQAVTTITQEDDYSFRKN 212
+ T T+ ++ + N
Sbjct: 512 SGHSTESTKHKEHKAKTN 529
>sp|P07898|PGCA_CHICK Aggrecan core protein OS=Gallus gallus GN=ACAN PE=1 SV=2
Length = 2109
Score = 33.5 bits (75), Expect = 2.4, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 17 SGRPEQPKEKA--PTMSSVA--MPYTGGDIKKSGEL-GKMFDIPMDSAKSRKSGPITGAP 71
SG PE E + P +S A +P G+ EL G+ +P S + ++G P
Sbjct: 1010 SGVPELSGEHSGVPGLSGEAFEVPELSGEHSGVTELSGEHSGLPELSGEPFGVPELSGFP 1069
Query: 72 SR---TGSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKK-TNSGPLNKHGEPI 127
S +G +GA SG + + +G + SG +S S+S+++ T + I
Sbjct: 1070 SGLDISGEPSGAPEVSGPVDVSGLTSGVDGSGEVSGVTFISTSLQEVTTPSVAEAEAKEI 1129
Query: 128 KKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLDSSG 183
+ SG SG + SG + S +G I G +SG L SG P G+++SSG
Sbjct: 1130 LEISGLPSGETSGMVSGSLDVSGQPSGHIGFGGSASGVLEMSGFP---GGAVESSG 1182
>sp|Q2J728|IF2_FRASC Translation initiation factor IF-2 OS=Frankia sp. (strain CcI3)
GN=infB PE=3 SV=1
Length = 1062
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 111 SMKKTNSGPLNKHGEPIKKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSG 170
S+ SGP + G + PQ GG R + P+PPS P G GP + GP ++G
Sbjct: 160 SVPSAPSGP--RPGPNAPRPGAPQGGGRPRPGT-PVPPSGPTAG----GPTAGGP--TAG 210
Query: 171 AP 172
P
Sbjct: 211 GP 212
>sp|Q6ZRV2|FA83H_HUMAN Protein FAM83H OS=Homo sapiens GN=FAM83H PE=1 SV=3
Length = 1179
Score = 32.0 bits (71), Expect = 5.8, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 2 GSRYPSHQLSNGLFVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMF----DIPMD 57
G+ H S G S PE+ P S+ T G I++ G + P+
Sbjct: 858 GAHQVLHNESKGSPTSAYPERKGSPTPGFSTRRGSPTTGFIEQKGSPTSAYPERRGSPVP 917
Query: 58 SAKSRKSGPITGAPSRTGSFAGAATHSGSIPNAAGRAGYNVSGPISSGGPGSSSMKK 114
R+S P+ P R GS T SG P AG A SGP+ GS +++
Sbjct: 918 PVPERRSSPVPPVPERRGSL--TLTISGESPK-AGPAEEGPSGPMEVLRKGSLRLRQ 971
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,211,380
Number of Sequences: 539616
Number of extensions: 5557680
Number of successful extensions: 23791
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 20688
Number of HSP's gapped (non-prelim): 2688
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)