BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020889
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 40/312 (12%)
Query: 5 LESLSDATSGAIGALVSTTILYPLDTCKTKYQAEVRARH---QQKYRNISDVLWEAISTR 61
L L D +G + A +S T + P++ K Q + ++ +++Y+ I D + +
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 62 QVLSLYQGLGTKNLQSFISQFIYFYGYSFFKRLYLQKSGNKSIGTR---ANLIVAAAAGA 118
LS ++G ++ F +Q + F +K+++L R NL AAGA
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 119 CTVIVTQPLDTASSRMQTSEFGKSK------GLWKSLSESTWSEAFDGLGISLLLTSNPS 172
++ PLD A +R+ ++ GK GL +++ S+ GL ++
Sbjct: 125 TSLCFVYPLDFARTRL-AADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 173 IQYT-----VFDXXXXXXXXXXXXXETGKEPSPEALPAFSAFFLGALSKCVATFLTYP-- 225
I Y V+D G P P+ + ++ + VA ++YP
Sbjct: 184 IIYRAAYFGVYDTA------------KGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFD 231
Query: 226 AIRCKVMLQAAESDEDGINQAPQRNKNTVSDALCSIWKREGPLGFYKGIQAQILKTVLSS 285
+R ++M+Q+ D + TV D I K EGP F+KG + +L+ +
Sbjct: 232 TVRRRMMMQSGRKGADIMYTG------TV-DCWRKIAKDEGPKAFFKGAWSNVLRG-MGG 283
Query: 286 ALLLMIKEKITK 297
A +L++ ++I K
Sbjct: 284 AFVLVLYDEIKK 295
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 18 ALVSTTILYPLDTCKTKYQAE------VRARHQQKYRNISDVLWEAISTRQVLSLYQGL- 70
A ++ I +PLDT K + Q + VR +YR + + + T SLY GL
Sbjct: 12 ACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLV 71
Query: 71 -GTKNLQSFISQFIYFYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACTVIVTQPLDT 129
G + SF S I Y K+ Y + S + IG+R L+ + GA V V QP D
Sbjct: 72 AGLQRQMSFASVRIGL--YDSVKQFYTKGSEHAGIGSR--LLAGSTTGALAVAVAQPTDV 127
Query: 130 ASSRMQ 135
R Q
Sbjct: 128 VKVRFQ 133
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 8 LSDATSGAIGALVSTTILYPLDTCKTKYQAEVRARHQQKYRNISDVLWEAISTRQVLSLY 67
L+ +T+GA+ V+ P D K ++QA+ RA ++Y++ + + L+
Sbjct: 109 LAGSTTGALAVAVAQ----PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLW 164
Query: 68 QGLGTKNLQSFISQFIYFYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACTVIVTQPL 127
+G ++ I Y K L K+ + + A AG CT ++ P+
Sbjct: 165 KGTSPNVARNAIVNCAELVTYDLIKDTLL-KANLMTDDLPCHFTSAFGAGFCTTVIASPV 223
Query: 128 DTASSRMQTSEFGK 141
D +R S G+
Sbjct: 224 DVVKTRYMNSALGQ 237
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 210 FLGA-LSKCVATFLTYPAIRCKVMLQAAESDEDGINQAPQRNKNTVSDALCSIWKREGPL 268
FLGA + C+A +T+P KV LQ + + A V + ++ + EGP
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 269 GFYKGIQAQILK 280
Y G+ A + +
Sbjct: 65 SLYNGLVAGLQR 76
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 79/206 (38%), Gaps = 39/206 (18%)
Query: 112 VAAAAGACTV-IVTQPLDTASSRMQTSEFGKSKGLWKSLSESTWSEAFDGLGISLLLTSN 170
+ A AC ++T PLDTA R+Q G+S+GL ++ + + + G ++++ T
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQ--GESQGLVRTAASAQYRGVL-GTILTMVRTEG 62
Query: 171 P------------------SIQYTVFDXXXXXXXXXXXXXETGKEPSPEALPAFSAFFLG 212
P S++ ++D G S G
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIG-----------SRLLAG 111
Query: 213 ALSKCVATFLTYPAIRCKVMLQAAESDEDGINQAPQRNKNTVSDALCSIWKREGPLGFYK 272
+ + +A + P KV QA G +R ++TV +A +I + EG G +K
Sbjct: 112 STTGALAVAVAQPTDVVKVRFQAQARAGGG-----RRYQSTV-EAYKTIAREEGIRGLWK 165
Query: 273 GIQAQILKTVLSSALLLMIKEKITKT 298
G + + + + L+ + I T
Sbjct: 166 GTSPNVARNAIVNCAELVTYDLIKDT 191
>pdb|1XE3|A Chain A, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|B Chain B, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|C Chain C, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|D Chain D, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|E Chain E, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
pdb|1XE3|F Chain F, Crystal Structure Of Purine Nucleoside Phosphorylase Deod
From Bacillus Anthracis
Length = 245
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 20 VSTTILYPLDTCKTKYQAEVRARHQQKYRNISDVLW--EAISTRQVLSLYQGLGTKNLQS 77
++ +IL P D + KY AE Y N+ +L ++V G+G ++
Sbjct: 22 IAESILLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISI 81
Query: 78 FISQFIYFYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACT 120
++++ I YG R+ + K + R +I A ACT
Sbjct: 82 YVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVII---AMTACT 121
>pdb|2AC7|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus With Adenosine Bound In The Active Site
pdb|2AC7|B Chain B, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus With Adenosine Bound In The Active Site
pdb|3UAV|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus
pdb|3UAW|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus Complexed With Adenosine
pdb|3UAX|A Chain A, Crystal Structure Of Adenosine Phosphorylase From Bacillus
Cereus Complexed With Inosine
Length = 235
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 20 VSTTILYPLDTCKTKYQAEVRARHQQKYRNISDVLW--EAISTRQVLSLYQGLGTKNLQS 77
++ +IL P D + KY AE Y N+ +L ++V G+G ++
Sbjct: 12 IAESILLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISI 71
Query: 78 FISQFIYFYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACT 120
++++ I YG R+ + K + R +I A ACT
Sbjct: 72 YVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVII---AMTACT 111
>pdb|3UAY|A Chain A, Crystal Structure Of Bacillus Cereus Adenosine
Phosphorylase D204n Mutant Complexed With Adenosine
pdb|3UAZ|A Chain A, Crystal Structure Of Bacillus Cereus Adenosine
Phosphorylase D204n Mutant Complexed With Inosine
Length = 235
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 20 VSTTILYPLDTCKTKYQAEVRARHQQKYRNISDVLW--EAISTRQVLSLYQGLGTKNLQS 77
++ +IL P D + KY AE Y N+ +L ++V G+G ++
Sbjct: 12 IAESILLPGDPLRAKYIAETFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISI 71
Query: 78 FISQFIYFYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACT 120
++++ I YG R+ + K + R +I A ACT
Sbjct: 72 YVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVII---AMTACT 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,038,439
Number of Sequences: 62578
Number of extensions: 272667
Number of successful extensions: 489
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)