Query 020889
Match_columns 320
No_of_seqs 139 out of 1853
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.6E-54 1.2E-58 382.1 22.7 277 4-298 4-296 (297)
2 2lck_A Mitochondrial uncouplin 100.0 8.5E-55 2.9E-59 387.0 18.2 274 9-304 3-291 (303)
3 1okc_A ADP, ATP carrier protei 100.0 2.8E-33 9.6E-38 247.8 12.7 184 105-299 6-201 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.7E-33 1.3E-37 247.7 12.0 182 5-187 102-288 (303)
5 3tgu_G UQCRQ, mitochondrial ub 38.7 21 0.00071 24.0 2.5 34 266-299 33-66 (81)
6 3cx5_H Cytochrome B-C1 complex 27.2 64 0.0022 22.2 3.5 35 265-299 42-76 (93)
7 1pp9_G Ubiquinol-cytochrome C 23.0 44 0.0015 22.3 2.0 35 265-299 32-66 (81)
8 2acm_A Mucin-1; auto-catalytic 17.3 25 0.00084 21.9 -0.2 20 252-271 40-59 (66)
9 3vjj_A P9-1; 3.00A {Rice black 12.3 1.5E+02 0.0052 24.7 3.1 35 120-155 275-309 (368)
10 3bxl_B CAM, voltage-dependent 10.0 1.8E+02 0.0063 14.6 1.8 12 288-299 5-16 (26)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.6e-54 Score=382.08 Aligned_cols=277 Identities=21% Similarity=0.314 Sum_probs=235.8
Q ss_pred CcchHHHHHHHHHHHHHHHhhhchhhhhhhHhhhccccc---cccCCCCHHHHHHHHHHhcChhhhccccchhhhhHHHH
Q 020889 4 DLESLSDATSGAIGALVSTTILYPLDTCKTKYQAEVRAR---HQQKYRNISDVLWEAISTRQVLSLYQGLGTKNLQSFIS 80 (320)
Q Consensus 4 ~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 80 (320)
+.+.+..+++|++|++++.+++||+|+||+|+|++.+.. ....|++.++++++|+++||++|||||+.+++++.+++
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 456788999999999999999999999999999986422 23568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCC---CChHHHHHHHHHHHHhHhhhcCcHHHHHHhHhccCC---------CCchHHHHH
Q 020889 81 QFIYFYGYSFFKRLYLQKSGNKS---IGTRANLIVAAAAGACTVIVTQPLDTASSRMQTSEF---------GKSKGLWKS 148 (320)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~~~---------~~~~~~~~i 148 (320)
.+++|.+||.+++.+....+..+ ......+++|++||+++.++++|+|++|+|+|++.. +..+.++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 99999999999985433222111 124577899999999999999999999999998742 123678889
Q ss_pred HHhhchhhhcccccccccc-cccchhhHHHHHHHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhH
Q 020889 149 LSESTWSEAFDGLGISLLL-TSNPSIQYTVFDQLKQRLLRRRLKRETGKEPSPEALPAFSAFFLGALSKCVATFLTYPAI 227 (320)
Q Consensus 149 ~~~~G~~~ly~G~~~~~~~-~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~d 227 (320)
+++||+++||||+.++++| ++..+++|.+||.+|+.+.+. ...+....+++|++||+++.++++|+|
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~------------~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP------------KNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG------------GCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC------------CCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 9999999999999999999 999999999999999865322 124567889999999999999999999
Q ss_pred HhHHHHhcccCCcccCCCCCCCCCCCHHHHHHHHHhhcCccccccchhhhhHHHHhhhhHHHHHHHHHHHH
Q 020889 228 RCKVMLQAAESDEDGINQAPQRNKNTVSDALCSIWKREGPLGFYKGIQAQILKTVLSSALLLMIKEKITKT 298 (320)
Q Consensus 228 ~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~ 298 (320)
+||+|+|.+.... .....|.++++|+++|+++||++|||||+.++++|. +.++++|.+||.+|+.
T Consensus 232 vvktr~q~~~~~~-----~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 232 TVRRRMMMQSGRK-----GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp HHHHHHHTTTTCC-----GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred HHHHHHhhcCCCC-----CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 9999999975432 123469999999999999999999999999999996 5789999999999875
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.5e-55 Score=386.99 Aligned_cols=274 Identities=18% Similarity=0.244 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhhHhhhccccc------cccCCCCHHHHHHHHHHhcChhhhccccchhhhhHHHHHH
Q 020889 9 SDATSGAIGALVSTTILYPLDTCKTKYQAEVRAR------HQQKYRNISDVLWEAISTRQVLSLYQGLGTKNLQSFISQF 82 (320)
Q Consensus 9 ~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~ 82 (320)
.++++|++|++++.+++||+|+||+|+|++.... ....+++.++++++|+++||++|||||+.+++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999986432 2356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhHhhhcCcHHHHHHhHhccCC--------CCchHHHHHHHhhch
Q 020889 83 IYFYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACTVIVTQPLDTASSRMQTSEF--------GKSKGLWKSLSESTW 154 (320)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~~~--------~~~~~~~~i~~~~G~ 154 (320)
++|.+|+.+++.+....+ ..+....+++|++||+++.++++|+|++|+|+|.+.. +..+.+++++++||+
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 999999999998864422 3567889999999999999999999999999999763 223678899999999
Q ss_pred hhhcccccccccc-cccchhhHHHHHHHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHhHHHH
Q 020889 155 SEAFDGLGISLLL-TSNPSIQYTVFDQLKQRLLRRRLKRETGKEPSPEALPAFSAFFLGALSKCVATFLTYPAIRCKVML 233 (320)
Q Consensus 155 ~~ly~G~~~~~~~-~~~~~~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~d~vk~r~ 233 (320)
++||||+.+++++ ++..+++|.+||.+|+.+.+.. ....+....+++|++||++++++++|+|+||+|+
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~----------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrl 230 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN----------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRY 230 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT----------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999 9999999999999998765432 1234567889999999999999999999999999
Q ss_pred hcccCCcccCCCCCCCCCCCHHHHHHHHHhhcCccccccchhhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 020889 234 QAAESDEDGINQAPQRNKNTVSDALCSIWKREGPLGFYKGIQAQILKTVLSSALLLMIKEKITKTSWVLLL 304 (320)
Q Consensus 234 q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~~~~~~~ 304 (320)
|.+... .|.++++|+++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.....
T Consensus 231 q~~~~~----------~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 231 MNSALG----------QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp TTCCSS----------SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred Hhcccc----------ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 998643 3999999999999999999999999999999999999999999999988755443
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.8e-33 Score=247.79 Aligned_cols=184 Identities=14% Similarity=0.195 Sum_probs=155.6
Q ss_pred ChHHHHHHHHHHHHhHhhhcCcHHHHHHhHhccCC-----------CCchHHHHHHHhhchhhhcccccccccc-cccch
Q 020889 105 GTRANLIVAAAAGACTVIVTQPLDTASSRMQTSEF-----------GKSKGLWKSLSESTWSEAFDGLGISLLL-TSNPS 172 (320)
Q Consensus 105 ~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~~~-----------~~~~~~~~i~~~~G~~~ly~G~~~~~~~-~~~~~ 172 (320)
+.+..+++|++||+++.++++|+|++|+|+|.+.. +..+.+++++++||+++||||+.+++++ ++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 45678999999999999999999999999998752 1236778899999999999999999998 99999
Q ss_pred hhHHHHHHHHHHHHHhhccccCCCCCCCCCCChHHHHHHHHHHHHHHhhhcchhHHhHHHHhcccCCcccCCCCCCCCCC
Q 020889 173 IQYTVFDQLKQRLLRRRLKRETGKEPSPEALPAFSAFFLGALSKCVATFLTYPAIRCKVMLQAAESDEDGINQAPQRNKN 252 (320)
Q Consensus 173 ~~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~P~d~vk~r~q~~~~~~~~~~~~~~~~~~ 252 (320)
++|.+||.+|+.+.... + . ...........+++|++||+++.++++|+|+||+|+|.+.... .....|.
T Consensus 86 ~~f~~ye~~k~~~~~~~---~--~-~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----~~~~~~~ 154 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGV---D--R-HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-----AAQREFT 154 (297)
T ss_dssp HHHHHHHHHHHHHHTTC---C--T-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----TTTCSCS
T ss_pred HHHHHHHHHHHHhcccc---C--c-ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----CcCcCCC
Confidence 99999999998654321 0 0 0000123466889999999999999999999999999985421 2234689
Q ss_pred CHHHHHHHHHhhcCccccccchhhhhHHHHhhhhHHHHHHHHHHHHH
Q 020889 253 TVSDALCSIWKREGPLGFYKGIQAQILKTVLSSALLLMIKEKITKTS 299 (320)
Q Consensus 253 ~~~~~~~~i~~~eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~~ 299 (320)
++++|+++|+++||++|||||+.++++|.+|.++++|.+||.+++.+
T Consensus 155 ~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~ 201 (297)
T 1okc_A 155 GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201 (297)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999864
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.7e-33 Score=247.66 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=161.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhchhhhhhhHhhhccccccccCCCCHHHHHHHHHHhcChhhhccccchhhhhHHHHHHHH
Q 020889 5 LESLSDATSGAIGALVSTTILYPLDTCKTKYQAEVRARHQQKYRNISDVLWEAISTRQVLSLYQGLGTKNLQSFISQFIY 84 (320)
Q Consensus 5 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 84 (320)
.+....+++|++|++++.++++|+|+||+|+|++........|++.++++++|+++||++|||||+.+++++.+++.+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999986443445789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhHhhhcCcHHHHHHhHhccCCCC----chHHHHHHHhhchhhhccc
Q 020889 85 FYGYSFFKRLYLQKSGNKSIGTRANLIVAAAAGACTVIVTQPLDTASSRMQTSEFGK----SKGLWKSLSESTWSEAFDG 160 (320)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~~~~~----~~~~~~i~~~~G~~~ly~G 160 (320)
|.+||.+++.+..... .+.+....+++|++||+++.++++|+|+||+|+|.+.... .+++++++++||+++||||
T Consensus 182 f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 182 LVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 9999999998765432 2455678899999999999999999999999999986433 3677889999999999999
Q ss_pred ccccccc-cccchhhHHHHHHHHHHHHH
Q 020889 161 LGISLLL-TSNPSIQYTVFDQLKQRLLR 187 (320)
Q Consensus 161 ~~~~~~~-~~~~~~~f~~y~~~k~~~~~ 187 (320)
+.|+++| +|..+++|.+||.+|+.+..
T Consensus 261 ~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 261 FMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999976543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=38.74 E-value=21 Score=23.95 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=26.4
Q ss_pred CccccccchhhhhHHHHhhhhHHHHHHHHHHHHH
Q 020889 266 GPLGFYKGIQAQILKTVLSSALLLMIKEKITKTS 299 (320)
Q Consensus 266 G~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~~ 299 (320)
|+...+|-+..+++..+|..++.+.+|++-++..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3444444456778999999999999999988874
No 6
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=27.16 E-value=64 Score=22.18 Aligned_cols=35 Identities=6% Similarity=0.160 Sum_probs=30.7
Q ss_pred cCccccccchhhhhHHHHhhhhHHHHHHHHHHHHH
Q 020889 265 EGPLGFYKGIQAQILKTVLSSALLLMIKEKITKTS 299 (320)
Q Consensus 265 eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~~ 299 (320)
.|+...+|-+..+++..+|..++...+|++-++..
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 57777888888889999999999999999998875
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=22.97 E-value=44 Score=22.32 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=28.0
Q ss_pred cCccccccchhhhhHHHHhhhhHHHHHHHHHHHHH
Q 020889 265 EGPLGFYKGIQAQILKTVLSSALLLMIKEKITKTS 299 (320)
Q Consensus 265 eG~~glyrG~~~~~~r~~~~~~i~~~~ye~~~~~~ 299 (320)
.|+...+|-+..+++..+|..++.+.+|++-++..
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 34455566678888899999999999999988874
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=17.30 E-value=25 Score=21.86 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHhhcCccccc
Q 020889 252 NTVSDALCSIWKREGPLGFY 271 (320)
Q Consensus 252 ~~~~~~~~~i~~~eG~~gly 271 (320)
+++.+.+.+||+++|+.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56778899999999999886
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.32 E-value=1.5e+02 Score=24.74 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=27.0
Q ss_pred HhhhcCcHHHHHHhHhccCCCCchHHHHHHHhhchh
Q 020889 120 TVIVTQPLDTASSRMQTSEFGKSKGLWKSLSESTWS 155 (320)
Q Consensus 120 ~~~i~~P~d~ik~r~q~~~~~~~~~~~~i~~~~G~~ 155 (320)
+.+=-+|||.+|-.++... +....+.+.++++|+.
T Consensus 275 aTFdnypfdllRfqL~Sli-stp~~I~e~i~K~GLF 309 (368)
T 3vjj_A 275 ATFDNYPFDLLRFQLSSLI-STPALIREKIAKEGLF 309 (368)
T ss_dssp HHCTTCBHHHHHHHCSSCC-CCCHHHHHHHHHSCSE
T ss_pred ecCCCCCHHHHHHHhhhhc-cChHHHHHHHHhcCce
Confidence 3445689999988877665 6678999999998743
No 10
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=10.05 E-value=1.8e+02 Score=14.60 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 020889 288 LLMIKEKITKTS 299 (320)
Q Consensus 288 ~~~~ye~~~~~~ 299 (320)
.++++|+.++.-
T Consensus 5 a~mI~e~yrq~K 16 (26)
T 3bxl_B 5 AMMIMDYYKQSK 16 (26)
T ss_pred HHHHHHHHHHHH
Confidence 577888888764
Done!