BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020890
         (320 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8C8W9|NS1_I67A2 Non-structural protein 1 (Fragment) OS=Influenza A virus (strain
           A/Swine/Wisconsin/1/1967 H1N1) GN=NS PE=3 SV=1
          Length = 219

 Score = 34.7 bits (78), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 70  CFGFDTFFATDVRRFGDGGI----FIGNLRKPIEEVIPK-----LEKKLSEAAGRDVVVW 120
            F  D F     +RF D G+    F+  LR+  + +  +     L  + +  AG+ +V W
Sbjct: 8   SFQVDCFLWHIRKRFADNGLGDAPFLDRLRRDQKSLRGRGSTLGLNIETATLAGKQIVEW 67

Query: 121 FMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPW 155
            ++E++N+  K   A  P +       L ++S  W
Sbjct: 68  ILKEESNETLKMTIASVPSSRYLADMTLEEMSRDW 102


>sp|Q9YAC7|PAN_AERPE Proteasome-activating nucleotidase OS=Aeropyrum pernix (strain ATCC
           700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=pan
           PE=3 SV=1
          Length = 409

 Score = 32.0 bits (71), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 115 RDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPWGYVSAIVLCVATFGTIAIM 174
           RDV +  +++K   +TK+  ++Q + E   + E+TKL +P  Y+ A+VL V     + + 
Sbjct: 21  RDVEIRILKDKVRSLTKEKISLQKELEY-YKNEITKLLSPP-YIEAVVLEVIDDNRVVVK 78

Query: 175 S 175
           S
Sbjct: 79  S 79


>sp|Q86564|CAPSD_RBDVR Capsid protein OS=Raspberry bushy dwarf virus (isolate Malling
           Jewel raspberry/R15) PE=4 SV=1
          Length = 274

 Score = 32.0 bits (71), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 2   GNPSIEAAIKLEKKRADTKLKELDRESTDN-----PIMRLFNRLVRDSLTREKERLE 53
           G P  + ++  + KR +T LK  DRE  DN     PI R   ++++ S ++ ++R E
Sbjct: 50  GKPHADMSMSAKVKRVNTWLKNFDREYWDNQFASKPIPRPAKQVLKGSSSKSQQRDE 106


>sp|O92564|NS1_I61A1 Non-structural protein 1 OS=Influenza A virus (strain
           A/Swine/Wisconsin/1/1961 H1N1) GN=NS PE=3 SV=1
          Length = 230

 Score = 32.0 bits (71), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 10/103 (9%)

Query: 62  LDLNKLRGCFGFDTFFATDVRRFGDGGI----FIGNLRKPIEEVIPK-----LEKKLSEA 112
           +D N +   F  D F     +RF D  +    F+  LR+  + +  +     L  + +  
Sbjct: 1   MDFNTV-SSFQVDCFLWHIRKRFADNELGDAPFLDRLRRDQKSLRGRGSTLGLNIETATL 59

Query: 113 AGRDVVVWFMEEKTNDITKQACAVQPKAEIDLQFELTKLSTPW 155
           AG+ +V W ++E++N+  K   A  P +       L ++S  W
Sbjct: 60  AGKQIVEWILKEESNEALKMTIASVPSSRYLADMTLEEMSRDW 102


>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5)
            GN=rep PE=3 SV=1
          Length = 7132

 Score = 31.6 bits (70), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 40   LVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIG 92
            L+RD L+       K  E     DL KL  CF F T F T+V      G  IG
Sbjct: 6989 LIRDKLSLGGSVAIKITEFSWNADLYKLMSCFAFWTVFCTNVNASSSEGFLIG 7041


>sp|P0C6X2|R1AB_CVHN1 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N1)
            GN=rep PE=3 SV=1
          Length = 7182

 Score = 31.6 bits (70), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 23/53 (43%)

Query: 40   LVRDSLTREKERLEKAEESFKALDLNKLRGCFGFDTFFATDVRRFGDGGIFIG 92
            L+RD L+       K  E     DL KL  CF F T F T+V      G  IG
Sbjct: 7039 LIRDKLSLGGSVAIKITEFSWNADLYKLMSCFAFWTVFCTNVNASSSEGFLIG 7091


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.139    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,487,253
Number of Sequences: 539616
Number of extensions: 4607910
Number of successful extensions: 13135
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 13123
Number of HSP's gapped (non-prelim): 27
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)