BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020891
         (320 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356534864|ref|XP_003535971.1| PREDICTED: uncharacterized protein all1601-like [Glycine max]
          Length = 452

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 289/320 (90%), Positives = 313/320 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAV+CVQSDPDDR +PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 133 MLKSGMVEAVICVQSDPDDRFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 192

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVEHHLNL+KLYVLGTNCVDNGTR+GLDKFLKAAS  PETVLHYE
Sbjct: 193 RLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTRQGLDKFLKAASQSPETVLHYE 252

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 253 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 312

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GI MTQHPQY+TVRNERG+EMLSL++NLLEITPTIS+GDRRPFVMETVKADD AK+GRG
Sbjct: 313 SGIGMTQHPQYVTVRNERGREMLSLIENLLEITPTISTGDRRPFVMETVKADDEAKLGRG 372

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+GNL+AF +NL+GPKGLEFARYSLDYHTIRNYLHVNR WGK+RAD+HMP+YA
Sbjct: 373 PSQPAPKFIGNLLAFILNLIGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADRHMPTYA 432

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIV++YNQNGQI++MLS+K
Sbjct: 433 KKIVDLYNQNGQIEKMLSNK 452


>gi|225433343|ref|XP_002285592.1| PREDICTED: uncharacterized protein all1601 [Vitis vinifera]
 gi|297741879|emb|CBI33314.3| unnamed protein product [Vitis vinifera]
          Length = 457

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/320 (90%), Positives = 312/320 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK GMVEAV+CVQSDP+DRLSPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 138 MLKAGMVEAVICVQSDPEDRLSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEAAGVK 197

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNL+KLYVLGTNCVDNGTREGLDKFL AASSEPETVLHYE
Sbjct: 198 RLLFCGVGCQVQALRSVEQHLNLDKLYVLGTNCVDNGTREGLDKFLNAASSEPETVLHYE 257

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPAN+LVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 258 FMQDYKVHLKHLDGHIEEVPYFCLPANELVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 317

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQY+TVRNERG+EMLSLV+NLLEI PT SSGDRRPFVMETVKADDNAK+G+G
Sbjct: 318 PGVSMTQHPQYVTVRNERGREMLSLVENLLEIIPTTSSGDRRPFVMETVKADDNAKLGKG 377

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKFVGNLIAF +NL+GPKGLEFARYSLDYHTIRNY++VNR WGK+RAD+HMPSYA
Sbjct: 378 PSQPAPKFVGNLIAFILNLIGPKGLEFARYSLDYHTIRNYIYVNRMWGKQRADRHMPSYA 437

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KK+V++YNQNG+ID+MLS+K
Sbjct: 438 KKLVDLYNQNGEIDKMLSNK 457


>gi|255554300|ref|XP_002518190.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis]
 gi|223542786|gb|EEF44323.1| Coenzyme F420 hydrogenase subunit beta, putative [Ricinus communis]
          Length = 458

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AV+CVQSDP+DRLSPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVEA+GVK
Sbjct: 139 MLKADMVDAVICVQSDPEDRLSPRPVLARTPQEVLAAKGVKPTLSPNLNTLALVEASGVK 198

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAAS EPETVLHYE
Sbjct: 199 RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASDEPETVLHYE 258

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDG IEEVPYFCLPA DLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 259 FMQDYKVHLKHLDGRIEEVPYFCLPATDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQY+TVRN+RG+EML LV+ LLEITPTISSGDRRPFVMETVKADDNAK+G+G
Sbjct: 319 AGVSMTQHPQYVTVRNDRGREMLDLVRGLLEITPTISSGDRRPFVMETVKADDNAKLGKG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQ APKFVGN +AF +NL+GPKGLEFARYSLDYHTIRNYL+ NRAWGK RA++H PSYA
Sbjct: 379 PSQSAPKFVGNFLAFILNLIGPKGLEFARYSLDYHTIRNYLYTNRAWGKARAERHTPSYA 438

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYNQNGQIDQML +K
Sbjct: 439 KKIVEMYNQNGQIDQMLQNK 458


>gi|224110688|ref|XP_002315601.1| predicted protein [Populus trichocarpa]
 gi|222864641|gb|EEF01772.1| predicted protein [Populus trichocarpa]
          Length = 456

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 304/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAV+CVQSDP+DR SPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 137 MLKSGMVEAVICVQSDPEDRFSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEAAGVK 196

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVEHHLNL+KLYVLGTNCVDNGTREGLDKFLKAAS EPETVLHYE
Sbjct: 197 RLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASDEPETVLHYE 256

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDG IEEVPYFCLPAN+LVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 257 FMQDYKVHLKHLDGRIEEVPYFCLPANELVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 316

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRNERG+EM+ LVKNLLEITPTI+SGDRRPFVMETV ADDNAK+G+G
Sbjct: 317 PGVSMTQHPQYITVRNERGREMIGLVKNLLEITPTINSGDRRPFVMETVNADDNAKLGKG 376

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQP PKF+GN IAF +NLVGPKGLEFARYSLDYHTIRNYL+ NR WGK RAD+H PSYA
Sbjct: 377 PSQPLPKFIGNFIAFLLNLVGPKGLEFARYSLDYHTIRNYLYTNRTWGKDRADRHTPSYA 436

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVE YN+NGQID ML +K
Sbjct: 437 KKIVESYNKNGQIDLMLQNK 456


>gi|356577586|ref|XP_003556905.1| PREDICTED: uncharacterized protein all1601-like [Glycine max]
          Length = 452

 Score =  609 bits (1570), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 282/320 (88%), Positives = 307/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAV+CVQSDPDD+ +PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 133 MLKSGMVEAVICVQSDPDDKFAPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 192

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFC VGCQVQALRSVEHHLNL+KLYVLGTNCVDNGTREGLDKFLKAAS  PE VLHYE
Sbjct: 193 RLLFCVVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLKAASQSPEIVLHYE 252

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLP NDLVDVIAPSCYSCFDYTNAL DLVVGYMGVPK+
Sbjct: 253 FMQDYKVHLKHLDGHIEEVPYFCLPTNDLVDVIAPSCYSCFDYTNALVDLVVGYMGVPKH 312

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GI MTQHPQY+TVRN+RG+EMLSL++ LLEITPTIS+G+RRPFVMETVKADD AK+GRG
Sbjct: 313 SGIGMTQHPQYVTVRNKRGREMLSLIEKLLEITPTISTGNRRPFVMETVKADDEAKLGRG 372

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+G+L+AF +NLVGPKGLEFARYSLDYHTIRNYLHVNR WGK+RADKHMP+YA
Sbjct: 373 PSQPAPKFIGSLLAFILNLVGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADKHMPTYA 432

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIV+ YNQNGQI++MLS+K
Sbjct: 433 KKIVDSYNQNGQIEKMLSNK 452


>gi|449433213|ref|XP_004134392.1| PREDICTED: 7-hydroxymethyl chlorophyll a reductase,
           chloroplastic-like [Cucumis sativus]
          Length = 459

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/319 (88%), Positives = 311/319 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAVVCVQSDP+DRLSPRP+LARTPEEVLAA+GVKPTLSPNLNTLALVEAAGVK
Sbjct: 139 MLKSGMVEAVVCVQSDPEDRLSPRPILARTPEEVLAARGVKPTLSPNLNTLALVEAAGVK 198

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTREGLDKFLKAAS+EPETVLHYE
Sbjct: 199 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYE 258

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 259 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GISMTQHPQYITVRNERG+EML LV+  LEITPTIS+G+RRP VMETVKADD+AK+G+G
Sbjct: 319 SGISMTQHPQYITVRNERGREMLGLVEQYLEITPTISNGNRRPLVMETVKADDDAKLGKG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+GN+IAFF+NL+GPKGLEFARYSLDYHTIRN+L+V+R WGK+RADKH P+YA
Sbjct: 379 PSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVSRIWGKQRADKHEPTYA 438

Query: 301 KKIVEMYNQNGQIDQMLSS 319
           KKIV++YNQ G+ID++LS+
Sbjct: 439 KKIVDLYNQKGEIDRILSN 457


>gi|449487600|ref|XP_004157707.1| PREDICTED: LOW QUALITY PROTEIN: 7-hydroxymethyl chlorophyll a
           reductase, chloroplastic-like [Cucumis sativus]
          Length = 459

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/319 (88%), Positives = 311/319 (97%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+GMVEAVVCVQSDP+DRLSPRP+LARTPEEVLAA+GVKPTLSPNLNTLALVEAAGVK
Sbjct: 139 MLKSGMVEAVVCVQSDPEDRLSPRPILARTPEEVLAARGVKPTLSPNLNTLALVEAAGVK 198

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTREGLDKFLKAAS+EPETVLHYE
Sbjct: 199 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYE 258

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 259 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +GISMTQHPQYITVRNERG+EML LV+  LEITPTIS+G+RRP VMETVKADD+AK+G+G
Sbjct: 319 SGISMTQHPQYITVRNERGREMLGLVEQYLEITPTISNGNRRPLVMETVKADDDAKLGKG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAPKF+GN+IAFF+NL+GPKGLEFARYSLDYHTIRN+L+V+R WGK+RADKH P+YA
Sbjct: 379 PSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVSRIWGKQRADKHEPTYA 438

Query: 301 KKIVEMYNQNGQIDQMLSS 319
           KKIV++YNQ G+ID++LS+
Sbjct: 439 KKIVDLYNQKGEIDRILSN 457


>gi|297848696|ref|XP_002892229.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata]
 gi|297338071|gb|EFH68488.1| coenzyme F420 hydrogenase family [Arabidopsis lyrata subsp. lyrata]
          Length = 461

 Score =  607 bits (1566), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 286/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 142 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 201

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 202 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 261

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 262 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 321

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADDNAK GRG
Sbjct: 322 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDNAKFGRG 381

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+QPAP FVGN+IAF ++LVGPKGLEFARYSLDYHTIRNYLHVNR WGK+RA+ HMPSYA
Sbjct: 382 PAQPAPIFVGNIIAFILSLVGPKGLEFARYSLDYHTIRNYLHVNRKWGKQRANIHMPSYA 441

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYN+NG ID+MLS K
Sbjct: 442 KKIVEMYNKNGHIDKMLSRK 461


>gi|30678943|ref|NP_171956.2| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana]
 gi|75150253|sp|Q8GS60.1|HCAR_ARATH RecName: Full=7-hydroxymethyl chlorophyll a reductase,
           chloroplastic; Flags: Precursor
 gi|25083091|gb|AAN72040.1| unknown protein [Arabidopsis thaliana]
 gi|26451024|dbj|BAC42618.1| unknown protein [Arabidopsis thaliana]
 gi|30387563|gb|AAP31947.1| At1g04620 [Arabidopsis thaliana]
 gi|332189601|gb|AEE27722.1| coenzyme F420 hydrogenase beta subunit [Arabidopsis thaliana]
          Length = 462

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/320 (89%), Positives = 305/320 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 143 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 202

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 203 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 262

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 263 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 322

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+G
Sbjct: 323 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQG 382

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYA
Sbjct: 383 PAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYA 442

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYN+NGQID+MLS K
Sbjct: 443 KKIVEMYNKNGQIDKMLSKK 462


>gi|326525733|dbj|BAJ88913.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 471

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/317 (87%), Positives = 298/317 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDR +PRPVLARTPEEV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 151 MLKANMVDAVVCVQSDPDDRFAPRPVLARTPEEVIAAKGVKPTLSPNLNTLALVEAAGVK 210

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFL AASSEPETVLHYE
Sbjct: 211 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLNAASSEPETVLHYE 270

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 271 FMQDYKVHLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 330

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G+SMTQHPQYITVRNERG+EMLSLV++LLE TPT+SSG R+PFVMETVKADD AKMG+G
Sbjct: 331 SGVSMTQHPQYITVRNERGREMLSLVESLLESTPTVSSGARQPFVMETVKADDAAKMGKG 390

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PS PAP FVGN+IAF +NL+GPKGLEF RYSLDYHTIRNYL+VNRAWG  RA++HMPSYA
Sbjct: 391 PSNPAPIFVGNIIAFLLNLIGPKGLEFGRYSLDYHTIRNYLYVNRAWGSSRAEQHMPSYA 450

Query: 301 KKIVEMYNQNGQIDQML 317
           KKIVE YN++G+ID ML
Sbjct: 451 KKIVEAYNKDGRIDSML 467


>gi|326528691|dbj|BAJ97367.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 483

 Score =  588 bits (1517), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/317 (87%), Positives = 297/317 (93%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDR +PRPVLARTPEEV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 163 MLKANMVDAVVCVQSDPDDRFAPRPVLARTPEEVIAAKGVKPTLSPNLNTLALVEAAGVK 222

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFL AASSEPETVLHYE
Sbjct: 223 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLNAASSEPETVLHYE 282

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 283 FMQDYKVHLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 342

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G+SMTQHPQYITVRNERG+EMLSLV+ LLE TPT+SSG R+PFVMETVKADD AKMG+G
Sbjct: 343 SGVSMTQHPQYITVRNERGREMLSLVEGLLESTPTVSSGARQPFVMETVKADDAAKMGKG 402

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PS PAP FVGN+IAF +NL+GPKGLEF RYSLDYHTIRNYL+VNRAWG  RA++HMPSYA
Sbjct: 403 PSNPAPIFVGNIIAFLLNLIGPKGLEFGRYSLDYHTIRNYLYVNRAWGSSRAEQHMPSYA 462

Query: 301 KKIVEMYNQNGQIDQML 317
           KKIVE YN++G+ID ML
Sbjct: 463 KKIVEAYNKDGRIDSML 479


>gi|75144471|sp|Q7XTG7.2|HCAR_ORYSJ RecName: Full=7-hydroxymethyl chlorophyll a reductase,
           chloroplastic; Flags: Precursor
 gi|38344778|emb|CAE01504.2| OSJNBb0026L04.9 [Oryza sativa Japonica Group]
 gi|38347660|emb|CAE04699.2| OSJNBa0041M06.1 [Oryza sativa Japonica Group]
 gi|116309054|emb|CAH66165.1| H0107B07.4 [Oryza sativa Indica Group]
          Length = 471

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/317 (87%), Positives = 300/317 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDRL+P PVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 154 MLKANMVDAVVCVQSDPDDRLAPMPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 213

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE
Sbjct: 214 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 273

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPA DLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 274 FMQDYKVHLKHLDGHIEEVPYFCLPAKDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 333

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRN+RG+EMLSLV+ LLE TPT+SSG R+PFV+ETVKADD AK GRG
Sbjct: 334 PGVSMTQHPQYITVRNDRGREMLSLVEGLLESTPTVSSGVRQPFVIETVKADDEAKQGRG 393

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PSQPAP FVGN+IAF +NL+GPKGLEFARYSLDYHTIRNYLHVNRAWGK+RA++H+PSYA
Sbjct: 394 PSQPAPTFVGNVIAFLLNLIGPKGLEFARYSLDYHTIRNYLHVNRAWGKQRAEQHIPSYA 453

Query: 301 KKIVEMYNQNGQIDQML 317
           KKIVE Y+++G+I+ ML
Sbjct: 454 KKIVEAYDKDGRIESML 470


>gi|357144250|ref|XP_003573225.1| PREDICTED: uncharacterized protein all1601-like [Brachypodium
           distachyon]
          Length = 466

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 274/317 (86%), Positives = 298/317 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDP+DRL+PRPVLARTPEEV+AAKGVKPTLSPNL+TLALVEAAGVK
Sbjct: 145 MLKANMVDAVVCVQSDPEDRLAPRPVLARTPEEVIAAKGVKPTLSPNLDTLALVEAAGVK 204

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAAS+EPETVLHYE
Sbjct: 205 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYE 264

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 265 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 324

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G+SMTQHPQYITVRNERG+EMLSLV+ LLE TPT+SSG R  FVMETVKADD AKMG+G
Sbjct: 325 SGVSMTQHPQYITVRNERGREMLSLVEGLLESTPTVSSGAREAFVMETVKADDAAKMGKG 384

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+ PAP+FVGN+IAF +NL+GPKGLEF RYSLDYHTIRNYL+V RAWG  RA++HMPSYA
Sbjct: 385 PANPAPRFVGNIIAFLLNLIGPKGLEFGRYSLDYHTIRNYLYVKRAWGSTRAEQHMPSYA 444

Query: 301 KKIVEMYNQNGQIDQML 317
           KKIVE YN++G+ID ML
Sbjct: 445 KKIVEAYNKDGRIDSML 461


>gi|242079547|ref|XP_002444542.1| hypothetical protein SORBIDRAFT_07g023570 [Sorghum bicolor]
 gi|241940892|gb|EES14037.1| hypothetical protein SORBIDRAFT_07g023570 [Sorghum bicolor]
          Length = 478

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 269/318 (84%), Positives = 300/318 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  +V+AVVCVQSDPDDRL+PRPVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 157 MLKANLVDAVVCVQSDPDDRLAPRPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 216

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAAS+EPETV+HYE
Sbjct: 217 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASNEPETVMHYE 276

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 277 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 336

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRN+RG+EMLSLV  LLE TPTISSG R+PFVMETVKADD AK+G+ 
Sbjct: 337 AGVSMTQHPQYITVRNDRGREMLSLVDGLLESTPTISSGSRQPFVMETVKADDAAKLGKD 396

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PS+PAP+FVG+++AF +NLVGPKGLEFARYSLDYHTIRNYLHV R WGK+RA++H+P YA
Sbjct: 397 PSKPAPRFVGDILAFLLNLVGPKGLEFARYSLDYHTIRNYLHVRRVWGKQRAEQHIPGYA 456

Query: 301 KKIVEMYNQNGQIDQMLS 318
           KKIVE Y+++G+I+ M++
Sbjct: 457 KKIVEAYDKDGRIEAMVT 474


>gi|414869973|tpg|DAA48530.1| TPA: hypothetical protein ZEAMMB73_316791 [Zea mays]
          Length = 470

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 270/318 (84%), Positives = 300/318 (94%), Gaps = 1/318 (0%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDRL+PRPVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 150 MLKANMVDAVVCVQSDPDDRLAPRPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 209

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTN  DNGTREGLDKFLKAASSEPETV+HYE
Sbjct: 210 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTN-FDNGTREGLDKFLKAASSEPETVMHYE 268

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 269 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 328

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRN+RG+EML+LV  LLE TPTISSG R+PFVMETVKADD AK+G+G
Sbjct: 329 AGVSMTQHPQYITVRNDRGQEMLNLVAGLLESTPTISSGSRQPFVMETVKADDAAKLGKG 388

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PS+PAP+FVG+++AF +NLVGPKGLEFARYSLDYHTIRNYLHV RAWGK+RA++H+P YA
Sbjct: 389 PSKPAPRFVGDILAFLLNLVGPKGLEFARYSLDYHTIRNYLHVRRAWGKQRAEQHIPGYA 448

Query: 301 KKIVEMYNQNGQIDQMLS 318
           KKIVE Y+++G+I+ M++
Sbjct: 449 KKIVEAYDKDGRIEAMVT 466


>gi|212722724|ref|NP_001131424.1| uncharacterized protein LOC100192754 [Zea mays]
 gi|194691478|gb|ACF79823.1| unknown [Zea mays]
          Length = 470

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 269/318 (84%), Positives = 299/318 (94%), Gaps = 1/318 (0%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDRL+PRPVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 150 MLKANMVDAVVCVQSDPDDRLAPRPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 209

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTN  DNGTREGLDKFLKAASSEPETV+HYE
Sbjct: 210 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTN-FDNGTREGLDKFLKAASSEPETVMHYE 268

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 269 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 328

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+SMTQHPQYITVRN+RG+ ML+LV  LLE TPTISSG R+PFVMETVKADD AK+G+G
Sbjct: 329 AGVSMTQHPQYITVRNDRGQVMLNLVAGLLESTPTISSGSRQPFVMETVKADDAAKLGKG 388

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           PS+PAP+FVG+++AF +NLVGPKGLEFARYSLDYHTIRNYLHV RAWGK+RA++H+P YA
Sbjct: 389 PSKPAPRFVGDILAFLLNLVGPKGLEFARYSLDYHTIRNYLHVRRAWGKQRAEQHIPGYA 448

Query: 301 KKIVEMYNQNGQIDQMLS 318
           KKIVE Y+++G+I+ M++
Sbjct: 449 KKIVEAYDKDGRIEAMVT 466


>gi|2494116|gb|AAB80625.1| Similar to Synechocystis hypothetical protein (gb|D90915)
           [Arabidopsis thaliana]
          Length = 433

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/320 (85%), Positives = 294/320 (91%), Gaps = 12/320 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 126 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 185

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 186 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 245

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKV            PYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 246 FMQDYKV------------PYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 293

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
           +G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+G
Sbjct: 294 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQG 353

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYA
Sbjct: 354 PAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYA 413

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIVEMYN+NGQID+MLS K
Sbjct: 414 KKIVEMYNKNGQIDKMLSKK 433


>gi|218192630|gb|EEC75057.1| hypothetical protein OsI_11171 [Oryza sativa Indica Group]
          Length = 503

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/349 (79%), Positives = 300/349 (85%), Gaps = 32/349 (9%)

Query: 1   MLKTGMVEAVVCVQ--------------------------------SDPDDRLSPRPVLA 28
           MLK  MV+AVVCVQ                                SDPDDRL+P PVLA
Sbjct: 154 MLKANMVDAVVCVQRHLNNNQILHNCFPLQKDFFHGLEKTVVCLLCSDPDDRLAPMPVLA 213

Query: 29  RTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYV 88
           RTP+EV+AAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE +L LEKLYV
Sbjct: 214 RTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLYV 273

Query: 89  LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAND 148
           LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPA D
Sbjct: 274 LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAKD 333

Query: 149 LVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKN 208
           LVDVIAPSCYSCFDYTN LADLVVGYMGVPKY G+SMTQHPQYITVRN+RG+EMLSLV+ 
Sbjct: 334 LVDVIAPSCYSCFDYTNGLADLVVGYMGVPKYPGVSMTQHPQYITVRNDRGREMLSLVEG 393

Query: 209 LLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFA 268
           LLE TPT+SSG R+PFV+ETVKADD AK GRGPSQPAP FVGN+IAF +NL+GPKGLEFA
Sbjct: 394 LLESTPTVSSGVRQPFVIETVKADDEAKQGRGPSQPAPTFVGNVIAFLLNLIGPKGLEFA 453

Query: 269 RYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQML 317
           RYSLDYHTIRNYLHVNRAWGK+RA++H+PSYAKKIVE Y+++G+I+ ML
Sbjct: 454 RYSLDYHTIRNYLHVNRAWGKQRAEQHIPSYAKKIVEAYDKDGRIESML 502


>gi|414869974|tpg|DAA48531.1| TPA: hypothetical protein ZEAMMB73_316791 [Zea mays]
          Length = 512

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/359 (75%), Positives = 302/359 (84%), Gaps = 41/359 (11%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDRL+PRPVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 150 MLKANMVDAVVCVQSDPDDRLAPRPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 209

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV+HYE
Sbjct: 210 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVMHYE 269

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 270 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 329

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKM--- 237
            G+SMTQHPQYITVRN+RG+EML+LV  LLE TPTISSG R+PFVMETVKADD AK+   
Sbjct: 330 AGVSMTQHPQYITVRNDRGQEMLNLVAGLLESTPTISSGSRQPFVMETVKADDAAKLGTS 389

Query: 238 --------------------------------------GRGPSQPAPKFVGNLIAFFINL 259
                                                 G+GPS+PAP+FVG+++AF +NL
Sbjct: 390 PNHHLYGILVLSIGIELVVTMTIRLAYIHVNKQTNGSTGKGPSKPAPRFVGDILAFLLNL 449

Query: 260 VGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQMLS 318
           VGPKGLEFARYSLDYHTIRNYLHV RAWGK+RA++H+P YAKKIVE Y+++G+I+ M++
Sbjct: 450 VGPKGLEFARYSLDYHTIRNYLHVRRAWGKQRAEQHIPGYAKKIVEAYDKDGRIEAMVT 508


>gi|148906965|gb|ABR16627.1| unknown [Picea sitchensis]
          Length = 462

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 262/320 (81%), Positives = 289/320 (90%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML++  V+AV+CVQSD +DR SP+P LARTPEEVLA +GVKPTLSPNLNTLALVEAAGVK
Sbjct: 143 MLRSNKVDAVICVQSDAEDRFSPKPFLARTPEEVLAGRGVKPTLSPNLNTLALVEAAGVK 202

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALR+VE +L LEKLYVLGTNCVDNGTREGLDKFLK AS  P+TVLHYE
Sbjct: 203 RLLFCGVGCQVQALRTVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKVASDSPDTVLHYE 262

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYKVHLKHLDGH EEVPYFCLPA++L DVIAPSCYSCFDYTNALADLVVGYMGVPKY
Sbjct: 263 FMQDYKVHLKHLDGHTEEVPYFCLPADELTDVIAPSCYSCFDYTNALADLVVGYMGVPKY 322

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            GISMTQHPQYITVRNERG+EML + ++LLEITPT+SSG RR FVMETVKADD AK  +G
Sbjct: 323 PGISMTQHPQYITVRNERGREMLDMARHLLEITPTVSSGKRRSFVMETVKADDKAKTAKG 382

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
            SQP P+FVGN IAF +NL GPKGLEFARYSLDYHTIRNYLHV R WGK+RA+KH+PSYA
Sbjct: 383 NSQPVPRFVGNAIAFILNLFGPKGLEFARYSLDYHTIRNYLHVYRTWGKQRAEKHIPSYA 442

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIV MYN NG+ID++L +K
Sbjct: 443 KKIVTMYNDNGEIDKLLFTK 462


>gi|414869979|tpg|DAA48536.1| TPA: hypothetical protein ZEAMMB73_316791 [Zea mays]
          Length = 310

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 260/303 (85%), Positives = 289/303 (95%)

Query: 16  DPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALR 75
           DPDDRL+PRPVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALR
Sbjct: 4   DPDDRLAPRPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALR 63

Query: 76  SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGH 135
           SVE +L LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV+HYEFMQDYKVHLKHLDGH
Sbjct: 64  SVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVMHYEFMQDYKVHLKHLDGH 123

Query: 136 IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVR 195
           IEEVPYFCLPANDLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY G+SMTQHPQYITVR
Sbjct: 124 IEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKYAGVSMTQHPQYITVR 183

Query: 196 NERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAF 255
           N+RG+EML+LV  LLE TPTISSG R+PFVMETVKADD AK+G+GPS+PAP+FVG+++AF
Sbjct: 184 NDRGQEMLNLVAGLLESTPTISSGSRQPFVMETVKADDAAKLGKGPSKPAPRFVGDILAF 243

Query: 256 FINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQ 315
            +NLVGPKGLEFARYSLDYHTIRNYLHV RAWGK+RA++H+P YAKKIVE Y+++G+I+ 
Sbjct: 244 LLNLVGPKGLEFARYSLDYHTIRNYLHVRRAWGKQRAEQHIPGYAKKIVEAYDKDGRIEA 303

Query: 316 MLS 318
           M++
Sbjct: 304 MVT 306


>gi|168035893|ref|XP_001770443.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678320|gb|EDQ64780.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 448

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/317 (78%), Positives = 282/317 (88%), Gaps = 3/317 (0%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+  MV+AV+CVQSDP+DR  P PVLARTPEEVLAA+GVKPTLSPNL+TLA VEAAGVK
Sbjct: 130 MLRKDMVDAVICVQSDPEDRFKPNPVLARTPEEVLAARGVKPTLSPNLSTLAFVEAAGVK 189

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE HL LEKLYVLGTNCVDNG R+GLDKFLKAAS +P+TVLHYE
Sbjct: 190 RLLFCGVGCQVQALRSVEKHLGLEKLYVLGTNCVDNGPRQGLDKFLKAASDDPDTVLHYE 249

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDYK     L   +  VPYFCLPA+DL DVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 250 FMQDYKALYHKL---LYCVPYFCLPADDLTDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 306

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G+ MT+HPQYITVRN RGKEML LV+ LL++TPTISSG+R PFVMETVKADD AK+G+ 
Sbjct: 307 PGVPMTRHPQYITVRNGRGKEMLDLVRPLLDVTPTISSGNRGPFVMETVKADDKAKLGKE 366

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
            +QPAP+FVGN+IA+ +NLVGPKGLEF RYSLDYH IRNYLHV+RAWG+KRAD+H+PSYA
Sbjct: 367 KTQPAPRFVGNIIAWLLNLVGPKGLEFGRYSLDYHNIRNYLHVHRAWGQKRADQHIPSYA 426

Query: 301 KKIVEMYNQNGQIDQML 317
           KK+V +YN+NG+ID++L
Sbjct: 427 KKLVSLYNKNGEIDKIL 443


>gi|384250915|gb|EIE24393.1| hypothetical protein COCSUDRAFT_14021 [Coccomyxa subellipsoidea
           C-169]
          Length = 436

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 253/314 (80%), Gaps = 6/314 (1%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML++G VEAVVCVQ+D  DR SP+P +AR  E++L AKGVKPTLSPNLNTLA VEA  VK
Sbjct: 127 MLESGQVEAVVCVQNDEADRFSPKPFVARCKEDILKAKGVKPTLSPNLNTLATVEALDVK 186

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLF GV    QALRSVE +L LE LYVLGTNCVDNG REGL+KFL AASS+P+TVLHYE
Sbjct: 187 RLLFIGV----QALRSVEKYLGLEALYVLGTNCVDNGPREGLEKFLNAASSDPDTVLHYE 242

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDY+VH+KHLDG  E VPYFCLPANDL DVIAPSCYSCFDY NALADLVVGYMGVP Y
Sbjct: 243 FMQDYRVHIKHLDGSFEYVPYFCLPANDLTDVIAPSCYSCFDYPNALADLVVGYMGVP-Y 301

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G  MT HPQYITVRN RG+ M+  VK  L+I PT+++GDR PFVM+TV +DD  K+G  
Sbjct: 302 YGTDMTSHPQYITVRNARGRAMMDAVKPRLKILPTMAAGDRTPFVMQTVLSDDAGKLGTA 361

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P+ PAP+FVGN IA  +  +GPKGLEF RYS+DYH IRN+++VNR  G  RA +H P +A
Sbjct: 362 PN-PAPRFVGNAIAKVLTWLGPKGLEFGRYSIDYHYIRNWIYVNRHMGPARAQRHTPEFA 420

Query: 301 KKIVEMYNQNGQID 314
           K++V MYN+ G+ID
Sbjct: 421 KRLVAMYNEKGEID 434


>gi|302842339|ref|XP_002952713.1| hypothetical protein VOLCADRAFT_93375 [Volvox carteri f.
           nagariensis]
 gi|300262057|gb|EFJ46266.1| hypothetical protein VOLCADRAFT_93375 [Volvox carteri f.
           nagariensis]
          Length = 496

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/328 (64%), Positives = 265/328 (80%), Gaps = 10/328 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLA--------AKGVKPTLSPNLNTLA 52
           ML++G VEAVVCVQSD +DR +P+PV+ART E+++         A+GVKPTLSPNLN LA
Sbjct: 168 MLRSGKVEAVVCVQSDENDRFTPKPVVARTVEDIIKVGRGLWGRARGVKPTLSPNLNVLA 227

Query: 53  LVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSE 112
            VEA  VK+LLF GVGCQVQALRS+E +L L+KLYVLGTNCVDNG R GLDKFL+AAS+ 
Sbjct: 228 TVEALQVKKLLFIGVGCQVQALRSIEPYLGLDKLYVLGTNCVDNGPRAGLDKFLRAASTR 287

Query: 113 PETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           P+  LHYEFMQDY+VH+KH DG  E VPYFCLPA +L DVIAPSCYSCFDYTN LAD+VV
Sbjct: 288 PQEALHYEFMQDYRVHVKHTDGSFEYVPYFCLPAKELNDVIAPSCYSCFDYTNGLADMVV 347

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKAD 232
           GYMGVP Y  + M +HPQY+ VRNERG+E+L  VK+ LE++PT+S GDRR  VM+TV +D
Sbjct: 348 GYMGVP-YLDLDMIRHPQYLVVRNERGQELLDSVKHRLEMSPTVSMGDRRSVVMQTVASD 406

Query: 233 DNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA 292
           D AK+G     PAP+++GNL+A+ +NL+GPKGLEF +YS+DYH IRNYL+V+R WG KRA
Sbjct: 407 DQAKLGE-LRDPAPRWLGNLLAWLLNLIGPKGLEFGKYSIDYHYIRNYLYVHRNWGAKRA 465

Query: 293 DKHMPSYAKKIVEMYNQNGQIDQMLSSK 320
           ++H+PS+ K+IV  Y+++G + + L+ K
Sbjct: 466 EQHIPSFVKEIVRQYDKDGAVTKRLNLK 493


>gi|222628616|gb|EEE60748.1| hypothetical protein OsJ_14296 [Oryza sativa Japonica Group]
          Length = 455

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/349 (66%), Positives = 254/349 (72%), Gaps = 80/349 (22%)

Query: 1   MLKTGMVEAVVCVQ--------------------------------SDPDDRLSPRPVLA 28
           MLK  MV+AVVCVQ                                SDPDDRL+P PVLA
Sbjct: 154 MLKANMVDAVVCVQRHLNNNQILHNCFPLQKDFFHGLEKTVVCLLCSDPDDRLAPMPVLA 213

Query: 29  RTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYV 88
           RTP+EV+AAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVE +L LEKLYV
Sbjct: 214 RTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLYV 273

Query: 89  LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAND 148
           LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYK            VPYFCLPA D
Sbjct: 274 LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYK------------VPYFCLPAKD 321

Query: 149 LVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKN 208
           LVDVIAPSCY                                    RN+RG+EMLSLV+ 
Sbjct: 322 LVDVIAPSCY------------------------------------RNDRGREMLSLVEG 345

Query: 209 LLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFA 268
           LLE TPT+SSG R+PFV+ETVKADD AK GRGPSQPAP FVGN+IAF +NL+GPKGLEFA
Sbjct: 346 LLESTPTVSSGVRQPFVIETVKADDEAKQGRGPSQPAPTFVGNVIAFLLNLIGPKGLEFA 405

Query: 269 RYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMYNQNGQIDQML 317
           RYSLDYHTIRNYLHVNRAWGK+RA++H+PSYAKKIVE Y+++G+I+ ML
Sbjct: 406 RYSLDYHTIRNYLHVNRAWGKQRAEQHIPSYAKKIVEAYDKDGRIESML 454


>gi|255079718|ref|XP_002503439.1| predicted protein [Micromonas sp. RCC299]
 gi|226518706|gb|ACO64697.1| predicted protein [Micromonas sp. RCC299]
          Length = 530

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 206/317 (64%), Positives = 254/317 (80%), Gaps = 1/317 (0%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK+G VE VVCV SDPD+ + PRP+LA T EE+L++KGVKP LSPNL+ LA VEA G+K
Sbjct: 144 MLKSGKVEGVVCVASDPDNAMHPRPILATTVEEILSSKGVKPALSPNLSVLAEVEARGLK 203

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+LF GVGC VQALRSVE +L LEKLYV+GTNC DNG +E L KFL+ AS +P TV+HYE
Sbjct: 204 RVLFIGVGCAVQALRSVEKYLGLEKLYVMGTNCTDNGRKETLSKFLENASEDPATVVHYE 263

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDY+VHLKH DG  E+VPYFCLPAN L DVIAPSCYSCFDY N LAD+VVGYMGVP Y
Sbjct: 264 FMQDYQVHLKHTDGSFEKVPYFCLPANKLKDVIAPSCYSCFDYVNGLADIVVGYMGVPYY 323

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
               MT+HPQY+TVRNERGKEM  +++   ++TP++SSG+R+PFVM+TV +DD A +GRG
Sbjct: 324 H-TDMTRHPQYVTVRNERGKEMFDMIRGDCDVTPSVSSGERKPFVMQTVISDDEATLGRG 382

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P +PAP  VG  IA+ +  +GPKG EF  YSLDYHTIRNYL+V R +G++RA +H+P YA
Sbjct: 383 PEEPAPLPVGKAIAWLLEKIGPKGKEFGMYSLDYHTIRNYLYVKRTFGEERATRHVPDYA 442

Query: 301 KKIVEMYNQNGQIDQML 317
           + +V+ YN  G +D+ L
Sbjct: 443 RLVVDEYNVYGAVDERL 459


>gi|308805665|ref|XP_003080144.1| unnamed protein product [Ostreococcus tauri]
 gi|116058604|emb|CAL54311.1| unnamed protein product [Ostreococcus tauri]
          Length = 453

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/318 (62%), Positives = 251/318 (78%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML++GMVE V+CV SDPD+  +PRP+LA T EE+++A+GVKP+LSPNL+ L+ VEA G+K
Sbjct: 132 MLESGMVEGVICVASDPDEPRAPRPILATTVEEIVSARGVKPSLSPNLSVLSEVEARGLK 191

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+LF GVGC V ALR+VE +L  +KLYV+G NC DNG  E   KF++ +S  P TVLHYE
Sbjct: 192 RILFIGVGCAVSALRAVEPYLGFDKLYVMGVNCTDNGRLESFQKFIQLSSENPGTVLHYE 251

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FM DY+VH KHLDG  E+VPYFCLPANDLVDVIAPSCYSCFDY N LAD+VVGYMG    
Sbjct: 252 FMPDYQVHFKHLDGTYEKVPYFCLPANDLVDVIAPSCYSCFDYVNGLADVVVGYMGSEYD 311

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
               M +HPQY+TVRN RG+EM+ LV++ ++++P+ SSGDRRPFVM+TV ADD AK GRG
Sbjct: 312 PSKPMNEHPQYVTVRNSRGREMIDLVRDDMDVSPSTSSGDRRPFVMQTVVADDEAKFGRG 371

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
           P +PAP+FVG LIA+ +  +GPKG EF  YSLDYHTIRNYL+VNR WG +RA +H+P YA
Sbjct: 372 PEKPAPRFVGKLIAWLLTKIGPKGKEFGMYSLDYHTIRNYLYVNRVWGAERAREHVPEYA 431

Query: 301 KKIVEMYNQNGQIDQMLS 318
           K++V  Y+ NG +   L+
Sbjct: 432 KRVVREYDVNGAVSARLN 449


>gi|159482986|ref|XP_001699546.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158272813|gb|EDO98609.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 418

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 209/320 (65%), Positives = 261/320 (81%), Gaps = 11/320 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML++G V+AVVCVQSD +DR +P+PV+ART E+++ A+GVKPTLSPNLN LA VEA  VK
Sbjct: 107 MLQSGKVDAVVCVQSDENDRFTPKPVVARTVEDIIKARGVKPTLSPNLNVLATVEALQVK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LLF GVGCQVQALRS+E HL LEKLYVLGTNCVDNG R+GLDKFLKAAS+ P+  LHYE
Sbjct: 167 KLLFIGVGCQVQALRSIEPHLGLEKLYVLGTNCVDNGPRKGLDKFLKAASTRPDQALHYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDY+            VPYFCLPAN+L DVIAPSCYSCFDY NALAD+VVGYMGVP Y
Sbjct: 227 FMQDYRWGY---------VPYFCLPANELNDVIAPSCYSCFDYPNALADMVVGYMGVP-Y 276

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
               MT HPQY+ VRN+RG E+L  V++ L+ITPT+S+GDRR  VM+TV +DD AKMG+ 
Sbjct: 277 LNKDMTSHPQYVVVRNDRGNELLDSVRHRLQITPTVSTGDRRGIVMQTVASDDEAKMGQ- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
              PAP+++GN++A+ +NL+GPKGLEF +YS+DYH IRNYL+VNR WG KRA++H+PS+A
Sbjct: 336 LRDPAPRWLGNMLAWLLNLIGPKGLEFGKYSIDYHYIRNYLYVNRKWGAKRAEQHIPSFA 395

Query: 301 KKIVEMYNQNGQIDQMLSSK 320
           KKIV+ Y+++G + + +S K
Sbjct: 396 KKIVQQYDKDGAVSKRISLK 415


>gi|307102673|gb|EFN50942.1| hypothetical protein CHLNCDRAFT_55433 [Chlorella variabilis]
          Length = 454

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 212/329 (64%), Positives = 259/329 (78%), Gaps = 11/329 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML++G V+AVVCVQS  DDR SP+P++AR+ E++LAA+GVKPTLSPNL+ LA VEA  VK
Sbjct: 119 MLESGQVDAVVCVQSQEDDRFSPKPMVARSREDILAARGVKPTLSPNLSVLATVEALDVK 178

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLF GVGCQVQALRS+E HL LEKLYVLGTNCVDNG R+GL+KFL AASS+P+TVLHYE
Sbjct: 179 RLLFIGVGCQVQALRSIEPHLQLEKLYVLGTNCVDNGPRQGLEKFLNAASSDPDTVLHYE 238

Query: 121 FM---------QDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           FM          DYKVH+KH DG  E +PYFCLPAN+L DVIAPSCYSCFDY NA ADLV
Sbjct: 239 FMQARERQAAAADYKVHIKHTDGSFEYIPYFCLPANELNDVIAPSCYSCFDYPNATADLV 298

Query: 172 VGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKA 231
           +GYMGVP Y    MT H QY+TVRN RG+E+L  V++ L + P +SSG R  FV++TV A
Sbjct: 299 IGYMGVP-YQNTDMTSHLQYLTVRNPRGQELLDSVRHRLVVEPPVSSGSRGAFVLQTVLA 357

Query: 232 DDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKR 291
           DD AK+G+GP  PAP++VGNL+A+ +  VGPKGLEFA+YS+DYH IRNY+HV R WG KR
Sbjct: 358 DDQAKLGKGPD-PAPRWVGNLLAWVLERVGPKGLEFAKYSVDYHYIRNYIHVMRHWGPKR 416

Query: 292 ADKHMPSYAKKIVEMYNQNGQIDQMLSSK 320
           A +H+P +A++IV  YN  G + +  + K
Sbjct: 417 AAQHIPDFAQRIVAEYNPKGMVSERAALK 445


>gi|145342511|ref|XP_001416225.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576450|gb|ABO94518.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 428

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/319 (63%), Positives = 248/319 (77%), Gaps = 13/319 (4%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G VE VVCV S  DD  +PRP+LA T EE+L+A+GVKP+LSPNL+ LA VEA G+KR
Sbjct: 123 LRSGAVEGVVCVASREDDSRAPRPILATTEEEILSARGVKPSLSPNLSVLAEVEARGLKR 182

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           +LF GVGC V ALR+VE HL L+ LYV+GTNC DNG  EG +KF+ AAS +P+TV+HYEF
Sbjct: 183 VLFIGVGCAVSALRAVEPHLGLDALYVVGTNCTDNGRWEGFNKFIDAASDDPDTVMHYEF 242

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQDY            +VPYFCLPA DL DVIAPSCYSCFDY N LAD+VVGYMGVP Y 
Sbjct: 243 MQDY------------QVPYFCLPAKDLTDVIAPSCYSCFDYVNGLADVVVGYMGVP-YM 289

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
              M +HPQY+TVRNERG+EM+ L++N +EITP+ SSGDRRPFVM+TV ADD AK+GRGP
Sbjct: 290 DKPMDRHPQYVTVRNERGREMIDLIRNDMEITPSTSSGDRRPFVMQTVVADDEAKLGRGP 349

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
            +PAP+ VG L+A+ +  +GPKG EF  YSLDYHTIRNY++VNRAWG KRA++H+P YAK
Sbjct: 350 DKPAPRVVGKLLAWLLTKIGPKGKEFGMYSLDYHTIRNYMYVNRAWGAKRAEEHVPEYAK 409

Query: 302 KIVEMYNQNGQIDQMLSSK 320
           ++V  Y+ +G I   L  K
Sbjct: 410 RVVREYDVDGAISARLRLK 428


>gi|303272651|ref|XP_003055687.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463661|gb|EEH60939.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 524

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/319 (60%), Positives = 240/319 (75%), Gaps = 13/319 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML +G V+ V+CV SD  + + P+P+LA T EE+L+++GVKP LSPNL+ LA VEA G+K
Sbjct: 151 MLASGKVDGVICVASDDANPMLPKPILATTAEEILSSRGVKPALSPNLSVLAEVEARGIK 210

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LLF GVGC VQALRSVE +L LE LYV+GTNC DNG +E L KFL  AS +P+TV+HYE
Sbjct: 211 KLLFVGVGCAVQALRSVEKYLGLEALYVVGTNCTDNGRKETLSKFLDNASEDPKTVIHYE 270

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDY           ++VPYFCLPAN L DVIAPSCYSCFDY N LAD+VVGYMGVP +
Sbjct: 271 FMQDY-----------QKVPYFCLPANKLKDVIAPSCYSCFDYVNGLADIVVGYMGVP-W 318

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
             + MT HPQY+TVRNE+G EM  L++    +TP++SSGDRRPFVM+TV +DD A +GRG
Sbjct: 319 MNVDMTAHPQYVTVRNEKGAEMFDLIRERAVVTPSVSSGDRRPFVMQTVISDDEATLGRG 378

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAW-GKKRADKHMPSY 299
           P +PAP  VG  IA+ +  +GPKG EF  YSLDYHTIRNYLHV R + G+ RA  H+P Y
Sbjct: 379 PEEPAPIAVGKAIAWLLEKIGPKGKEFGMYSLDYHTIRNYLHVKRRFGGEARAAAHVPKY 438

Query: 300 AKKIVEMYNQNGQIDQMLS 318
           A+ +V+ YN+NG ID  L+
Sbjct: 439 ARLVVDEYNENGAIDARLA 457


>gi|255635378|gb|ACU18042.1| unknown [Glycine max]
          Length = 199

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 175/199 (87%), Positives = 195/199 (97%)

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQDYK+HLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY+
Sbjct: 1   MQDYKIHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYS 60

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
           GI MTQHPQY+TVRNERG+EMLSL++NLLEITPTIS+GDRRPFVMETVKADD AK+GRGP
Sbjct: 61  GIGMTQHPQYVTVRNERGREMLSLIENLLEITPTISTGDRRPFVMETVKADDEAKLGRGP 120

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
           SQPAPKF+GNL+AF +NL+GPKGLEFARYSLDYHTIRNYLHVNR WGK+RAD+HMP+YAK
Sbjct: 121 SQPAPKFIGNLLAFILNLIGPKGLEFARYSLDYHTIRNYLHVNRMWGKERADRHMPTYAK 180

Query: 302 KIVEMYNQNGQIDQMLSSK 320
           KIV++YNQNGQI++MLS+K
Sbjct: 181 KIVDLYNQNGQIEKMLSNK 199


>gi|412986215|emb|CCO17415.1| predicted protein [Bathycoccus prasinos]
          Length = 480

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/320 (59%), Positives = 234/320 (73%), Gaps = 3/320 (0%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           ML+T  V+ VV V S   D  +P P L  T E++LA +GVKP+LSPNL   A +E    +
Sbjct: 159 MLRTKTVDCVVAVGSGEADARNPEPKLCFTEEDILACRGVKPSLSPNLKVFAEIETNPEI 218

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 119
           K +L+ GVGC V ALR VE +L L+ LYVLGTNC DNG  +G  KF+  A+ +P+ VLHY
Sbjct: 219 KNVLYIGVGCSVVALREVEQYLGLDNLYVLGTNCADNGRTDGFYKFVNNATDKPDEVLHY 278

Query: 120 EFMQDYKVHLKHLDGHIEEVPYFCLPANDLVD-VIAPSCYSCFDYTNALADLVVGYMGVP 178
           EFM DYKVHLK  DG  E++PYF LPA +L   VIA SC SCFDY N LADLVVGYMGV 
Sbjct: 279 EFMPDYKVHLKMRDGSYEKIPYFSLPAKELSSGVIAESCKSCFDYVNGLADLVVGYMGVD 338

Query: 179 KYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMG 238
               I M  HPQY+TVRNERG++M+ L+KN L+ITP+ + GDR+PFV++TV +DD A +G
Sbjct: 339 YDESIPMNLHPQYVTVRNERGQKMVDLIKNDLQITPSTTRGDRKPFVLQTVISDDEAYLG 398

Query: 239 RGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPS 298
           RGP + AP+FVGNLIA+ +N VGPKG EF  YSLDYHTIRNYL+VNR +GK+RA +H+PS
Sbjct: 399 RGPEKGAPRFVGNLIAWVLNKVGPKGKEFGMYSLDYHTIRNYLYVNRIYGKERAKEHIPS 458

Query: 299 YAKKIVEMY-NQNGQIDQML 317
           YA KIVE Y  +NG I + L
Sbjct: 459 YAMKIVEEYEGKNGDISKRL 478


>gi|443478994|ref|ZP_21068668.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Pseudanabaena biceps PCC 7429]
 gi|443015623|gb|ELS30495.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Pseudanabaena biceps PCC 7429]
          Length = 398

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 214/308 (69%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE V+CVQS   DR +P+PV+AR  EE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLERGLVEGVICVQSSTSDRFTPQPVIARNREEILAARVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT C DN TR GL KFL   S  PETV+HYE
Sbjct: 163 RLLAIGVGCQIQALRTVESKLGLEKLYVLGTPCTDNVTRSGLQKFLDTTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ VH KH DG  E+VP+F L   +L DV APSC +CFDYTNALAD+VVGYMG    
Sbjct: 223 FMQDFNVHFKHSDGSTEQVPFFGLNTKELKDVFAPSCMTCFDYTNALADIVVGYMGA--- 279

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                T   Q+I VRNE GKEML L+K+ L++ P IS GDRR  V + + A DNA     
Sbjct: 280 -----TFGWQWIVVRNETGKEMLELIKDQLQVQPVISQGDRRAAVQQGISAYDNA----- 329

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P ++  +I+F +N VGPKGLE+ R+S+D H +RN+L+V R + KK  + H+P +A
Sbjct: 330 --MTLPIWLAWIISFVVNKVGPKGLEYGRFSIDSHFVRNFLYVRRNYPKK-LEAHVPEFA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVAHYQ 394


>gi|113474585|ref|YP_720646.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein
           [Trichodesmium erythraeum IMS101]
 gi|110165633|gb|ABG50173.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Trichodesmium erythraeum IMS101]
          Length = 401

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 211/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEEVLAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 107 MLNQGIVEGVVCVQNTKEDRFQPMPVIARTPEEVLAAKVNKPTLSPNLSVLEKIEKSGMK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           ++L  GVGCQ+QALR+VE  L+LEKLYVLGT CVDN TREGL KFL+  S  PETV+HYE
Sbjct: 167 KILAIGVGCQIQALRAVEKKLDLEKLYVLGTPCVDNVTREGLQKFLETTSKSPETVVHYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L    L D+ APSC SCFDY N LADLVVGYMG    
Sbjct: 227 FMQDFRVHFKHEDGTVEKVPFFGLNTKKLKDIFAPSCLSCFDYVNGLADLVVGYMGA--- 283

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                T   Q+ITVRNE GK+ML LV N LE  P +S GDR   V +++ A D A     
Sbjct: 284 -----TFGWQWITVRNETGKQMLDLVMNQLETQPLMSQGDRHQAVQQSIPAYDQAVT--- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+ R+S+D H  RNYL+V R + KK  D H+P +A
Sbjct: 336 ----LPMWAAKLMGVVIEKIGPKGLEYGRFSIDSHFTRNYLYVKRNYPKK-LDAHVPEFA 390

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 391 KKIVEQY 397


>gi|443325346|ref|ZP_21054045.1| coenzyme F420-reducing hydrogenase, beta subunit [Xenococcus sp.
           PCC 7305]
 gi|442795030|gb|ELS04418.1| coenzyme F420-reducing hydrogenase, beta subunit [Xenococcus sp.
           PCC 7305]
          Length = 397

 Score =  343 bits (879), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 169/308 (54%), Positives = 214/308 (69%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+  +DR  P P++ARTPEEVLAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLRRGLVEGVVCVQNTKEDRFQPFPIIARTPEEVLAAKVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +REGL KFL   S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEAELGLEKLYVLGTPCVDNVSREGLQKFLDTTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC SCFDY N+LAD+VVGYMG P  
Sbjct: 223 FMQDFRVHFKHQDGSVEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADIVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEMLSL+++ ++  P +S GDR+  V +++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLSLIQDQIDTQPVMSKGDRKQAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL++ R   +K AD H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYLKRNHPEKLAD-HVPDYA 386

Query: 301 KKIVEMYN 308
           +KIVE Y 
Sbjct: 387 RKIVEQYE 394


>gi|354566184|ref|ZP_08985357.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Fischerella sp. JSC-11]
 gi|353546692|gb|EHC16140.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Fischerella sp. JSC-11]
          Length = 399

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/308 (56%), Positives = 209/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  GMVE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 105 MLNRGMVEGVVCVQNTKEDRFGPMPVIARTPEEILAARVNKPTLSPNLSVLEQVEKSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 165 RLLVIGVGCQIQALRTVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPDTVVHYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFRVHFKHEDGSTETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 284

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNERG+EML LVK+ LE  P +S GDR   V +++ A D       
Sbjct: 285 W--------QWIVVRNERGREMLELVKDQLETQPVMSKGDRTAAVQQSIPAYDKGVT--- 333

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  ++H+P YA
Sbjct: 334 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LEEHVPEYA 388

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 389 KRIVGQYK 396


>gi|427731855|ref|YP_007078092.1| coenzyme F420-reducing hydrogenase subunit beta [Nostoc sp. PCC
           7524]
 gi|427367774|gb|AFY50495.1| coenzyme F420-reducing hydrogenase, beta subunit [Nostoc sp. PCC
           7524]
          Length = 397

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 212/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNRGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE+VP+F L  N L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFKHEDGSIEKVPFFGLKTNQLKDIFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L+  P +S G+R+  V + + A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLDLVKDQLDTQPVMSEGNRKEAVQQGIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  L+   I+ +GPKGLE+AR+S+D H  RNYL V R +G+K  + H+P +A
Sbjct: 332 ----LPMWVAKLMGVVIDKIGPKGLEYARFSIDSHFTRNYLFVKRNYGEK-LEAHVPEFA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVGQYK 394


>gi|434397144|ref|YP_007131148.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Stanieria cyanosphaera PCC 7437]
 gi|428268241|gb|AFZ34182.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Stanieria cyanosphaera PCC 7437]
          Length = 398

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 212/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+PV+A TPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLTRGLVEGVVCVQNTEEDRFQPKPVIATTPEEILAARVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +REGL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVSREGLQKFLETTSKSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV++ L+  P +S GDR+  V +++ A D A     
Sbjct: 283 W--------QWIVVRNQTGKEMLELVQDQLDTEPVMSQGDRKQAVQQSIPAYDKAVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  D H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRHHPEK-LDAHVPEYA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVGQYQ 394


>gi|428775162|ref|YP_007166949.1| coenzyme F420 hydrogenase [Halothece sp. PCC 7418]
 gi|428689441|gb|AFZ42735.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halothece sp. PCC 7418]
          Length = 398

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 174/308 (56%), Positives = 212/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G VE VVCVQ+ P+DR  P P++ARTPEEVLAA+  KPTLSPNL+ L  VE +G K
Sbjct: 103 MLQQGKVEGVVCVQNTPEDRFQPMPIIARTPEEVLAARVNKPTLSPNLSILEEVEQSGFK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+V+  L LEKLYVLGT CVDN TREGL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVQDKLGLEKLYVLGTPCVDNVTREGLQKFLETTSKSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEKVPFFGLNTKELKDVFAPSCMSCFDYVNSLADLVVGYMGAP-- 280

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
            G       Q+I VRN+ GKEML LV++ LE     S G+R+  V +++ A D       
Sbjct: 281 FGY------QWIVVRNDIGKEMLDLVQDQLETQAVSSKGNRKAAVQQSIPAYDQGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL+V R + +K  D H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIEQVGPKGLEYARFSIDSHFTRNYLYVKRNYPEK-LDDHVPEYA 386

Query: 301 KKIVEMYN 308
           K+IVE Y 
Sbjct: 387 KRIVEQYE 394


>gi|22299388|ref|NP_682635.1| hypothetical protein tll1845 [Thermosynechococcus elongatus BP-1]
 gi|22295571|dbj|BAC09397.1| tll1845 [Thermosynechococcus elongatus BP-1]
          Length = 398

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 171/312 (54%), Positives = 213/312 (68%), Gaps = 16/312 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G VE VVCVQ+   DR +P+PV+ART EE+LAA+  KPTLSPNL+ L  VE AG+K
Sbjct: 103 LLESGRVEGVVCVQNSQSDRFTPKPVIARTREEILAARVNKPTLSPNLSVLEQVEQAGLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+V+  L LEKLYVLGT CVDN TR GL KFL+  S  PETV++YE
Sbjct: 163 RLLVIGVGCQIQALRAVQDKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVIYYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHSDGSTETVPFFGLKTNQLKDVFAPSCMSCFDYVNGLADLVVGYMGAPLG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRNERG+EML LV++ LEI P  S+GDR   V +++ A D       
Sbjct: 283 W--------QWLVVRNERGQEMLDLVRDQLEIQPVTSAGDRHAAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P++A
Sbjct: 332 ----LPMWAAKLVGLVIERIGPKGLEYARFSIDSHFTRNYLYVRRNYPQKLA-AHVPAFA 386

Query: 301 KKIVEMYNQNGQ 312
           KKIV+ Y    Q
Sbjct: 387 KKIVDQYQLPAQ 398


>gi|428780667|ref|YP_007172453.1| coenzyme F420-reducing hydrogenase subunit beta [Dactylococcopsis
           salina PCC 8305]
 gi|428694946|gb|AFZ51096.1| coenzyme F420-reducing hydrogenase, beta subunit [Dactylococcopsis
           salina PCC 8305]
          Length = 398

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 173/308 (56%), Positives = 212/308 (68%), Gaps = 18/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G VE VVCVQ+ PDDR  P P++ARTPEEVLAA+  KPTLSPNL+ L  VE +G K
Sbjct: 103 MLTQGKVEGVVCVQNHPDDRFQPMPIIARTPEEVLAARVNKPTLSPNLSILEQVEQSGFK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALRSV+  + LEKLYVLGT CVDN TREGL KFL+  S  PETV+HYE
Sbjct: 163 RLLAIGVGCQIQALRSVQDKIGLEKLYVLGTPCVDNVTREGLQKFLETTSKSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP-K 179
           FMQD++VH KH DG IE+VP+F L    L DV APSC SCFDY N+LADLVVGYMG P +
Sbjct: 223 FMQDFRVHFKHEDGSIEKVPFFGLNTKKLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFQ 282

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
           Y         Q++ VRN+ GKEML+LV + LE  P  S G+R+  V +++ A D      
Sbjct: 283 Y---------QWLVVRNDIGKEMLNLVADQLETQPVSSQGNRKAAVQQSIPAYDQGVT-- 331

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
                 P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  D H+P +
Sbjct: 332 -----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLED-HVPEF 385

Query: 300 AKKIVEMY 307
           AK+IVE Y
Sbjct: 386 AKRIVEQY 393


>gi|428206145|ref|YP_007090498.1| coenzyme F420 hydrogenase [Chroococcidiopsis thermalis PCC 7203]
 gi|428008066|gb|AFY86629.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chroococcidiopsis thermalis PCC 7203]
          Length = 398

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 212/307 (69%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 104 MLNRGIVEGVVCVQNTKEDRFQPMPIIARTPEEILAARVNKPTLSPNLSVLEQIEQSGMK 163

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 164 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSKSPDTVVHYE 223

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG    
Sbjct: 224 FMQDFRVHFKHEDGSVETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGA--- 280

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                T   Q+I VRN+RG+EML LV++ LE+ P IS GDR   V +++ A D A     
Sbjct: 281 -----TFGWQWIVVRNDRGREMLDLVQDKLELQPVISQGDRHQAVQQSIPAYDKAVT--- 332

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P +A
Sbjct: 333 ----LPMWAAKLMGVVIERIGPKGLEYARFSIDSHFTRNYLYVKRNYLEK-LEAHVPEFA 387

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 388 KRIVGQY 394


>gi|428202925|ref|YP_007081514.1| coenzyme F420-reducing hydrogenase subunit beta [Pleurocapsa sp.
           PCC 7327]
 gi|427980357|gb|AFY77957.1| coenzyme F420-reducing hydrogenase, beta subunit [Pleurocapsa sp.
           PCC 7327]
          Length = 397

 Score =  340 bits (871), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 169/308 (54%), Positives = 210/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVC+Q+  +DR  P+PVLA+TPEEVLAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGIVEGVVCIQNTTEDRFQPKPVLAKTPEEVLAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL   S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRTVEKELGLEKLYVLGTPCVDNVTRAGLQKFLDTTSKSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+KVH KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFKVHFKHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNE+G+EML L +  L+  P +S GDR+  V +++ A D       
Sbjct: 283 W--------QWIVVRNEKGREMLELAREQLDTQPVMSKGDRKQAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P +A
Sbjct: 332 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEK-LESHLPEFA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVGQYK 394


>gi|428223919|ref|YP_007108016.1| coenzyme F420 hydrogenase [Geitlerinema sp. PCC 7407]
 gi|427983820|gb|AFY64964.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Geitlerinema sp. PCC 7407]
          Length = 398

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 212/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G VE VVCVQ+   DR  P+PV+ARTPEE+LAA+  KPTLSPNL+ L LVE +G+K
Sbjct: 103 MLNRGWVEGVVCVQNTESDRFGPQPVIARTPEEILAARVNKPTLSPNLSVLELVEQSGLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+V+  L LEKLYVLGT CVDN +R+GL KFL+  S  PETV+HYE
Sbjct: 163 KLLVIGVGCQIQALRAVQDKLGLEKLYVLGTPCVDNVSRDGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEKVPFFGLNTKELKDVFAPSCLSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+EML LV + LE  P +S GDRR  V +++ A +       
Sbjct: 283 W--------QWIVVRNDRGQEMLDLVMDQLETQPVMSKGDRRAAVQQSIPAYEKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K AD H+P YA
Sbjct: 332 ----LPMWAAQLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVQRNHPEKLAD-HVPDYA 386

Query: 301 KKIVEMYN 308
           ++IV  Y 
Sbjct: 387 QRIVGQYQ 394


>gi|425468516|ref|ZP_18847529.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
 gi|389884813|emb|CCI34912.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9701]
          Length = 397

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 213/307 (69%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L+    +SSGDR+  V  ++ A D     +G
Sbjct: 283 W--------QWIMVRNDTGKEMLELVKDQLDTQDVMSSGDRKQAVQNSIPAYD-----KG 329

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
            +   P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 330 VT--LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|220907665|ref|YP_002482976.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219864276|gb|ACL44615.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. PCC 7425]
          Length = 402

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 206/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+PV+ARTP E+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 108 MLSRGLVEGVVCVQNTAEDRFQPKPVIARTPAEILAARVNKPTLSPNLSVLEQVEQSGMK 167

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALRSVE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 168 RLLVIGVGCQIQALRSVEQQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPQTVVHYE 227

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N LADLVVGYMG P  
Sbjct: 228 FMQDFRVHFKHEDGSEETVPFFGLKTNQLKDVFAPSCMSCFDYVNGLADLVVGYMGAPFG 287

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRN+RG+EML LVK+ LE  P +S GDRR  V +++ A D       
Sbjct: 288 W--------QWLVVRNDRGREMLELVKDQLETQPVMSQGDRRAAVQQSIPAYDKGVT--- 336

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL V R +  K    H+P +A
Sbjct: 337 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLFVKRNYRDKLV-AHVPEFA 391

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 392 KRIVNQY 398


>gi|218437110|ref|YP_002375439.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Cyanothece sp. PCC 7424]
 gi|218169838|gb|ACK68571.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. PCC 7424]
          Length = 397

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 211/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+ P+DR  P P+LA TPEE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLTRGLVEGVVCVQNTPEDRFQPMPILATTPEEILAAKVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR+GL KFL+  S  P+T++HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVTRDGLQKFLETTSKSPDTIVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRN+ G+EML LV++ +E    +SSGDRR  V +++ A D       
Sbjct: 283 W--------QWLVVRNDTGREMLDLVRDQIETQGVMSSGDRRQAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIERIGPKGLEYARFSIDSHYTRNYLYVKRNYPEK-LEAHVPEYA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVGQYK 394


>gi|166366747|ref|YP_001659020.1| coenzyme F420 hydrogenase subunit beta [Microcystis aeruginosa
           NIES-843]
 gi|166089120|dbj|BAG03828.1| coenzyme F420 hydrogenase subunit beta [Microcystis aeruginosa
           NIES-843]
          Length = 397

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLDRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L+    +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLELVKDQLDTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|428303898|ref|YP_007140723.1| coenzyme F420 hydrogenase [Crinalium epipsammum PCC 9333]
 gi|428245433|gb|AFZ11213.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Crinalium epipsammum PCC 9333]
          Length = 401

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML +GMVE VVCVQ+  +DR  P PV+ARTPEE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNSGMVEGVVCVQNTKEDRFQPMPVIARTPEEILAAKVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN  R GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVNRAGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSVEMVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LVK+ LE  P  S GDR+  V +++ A D       
Sbjct: 283 W--------QWIVVRNDTGQEMLDLVKDQLETQPVTSKGDRKEAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNY+++ R   +K  D H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIERIGPKGLEYARFSIDSHFTRNYIYLKRNHPEK-LDAHVPEYA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGQY 393


>gi|427736999|ref|YP_007056543.1| coenzyme F420-reducing hydrogenase subunit beta [Rivularia sp. PCC
           7116]
 gi|427372040|gb|AFY55996.1| coenzyme F420-reducing hydrogenase, beta subunit [Rivularia sp. PCC
           7116]
          Length = 397

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEEVLAAK  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNRGIVEGVVCVQNTQEDRFQPMPVIARTPEEVLAAKVNKPTLSPNLSVLEQVEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSKSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LAD+VVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSTETVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADIVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNERGKEML LVK+ +++   +S G+R+  V +++ A D       
Sbjct: 283 W--------QWIVVRNERGKEMLDLVKDQIDVQEVMSQGNRQAAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+  R   +K  D H+P +A
Sbjct: 332 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYTKRNHPEK-LDNHVPEFA 386

Query: 301 KKIVEMY 307
           K+IVE Y
Sbjct: 387 KRIVEQY 393


>gi|428314173|ref|YP_007125150.1| coenzyme F420-reducing hydrogenase subunit beta [Microcoleus sp.
           PCC 7113]
 gi|428255785|gb|AFZ21744.1| coenzyme F420-reducing hydrogenase, beta subunit [Microcoleus sp.
           PCC 7113]
          Length = 402

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 107 MLNRGIVEGVVCVQNTKEDRFQPMPIIARTPEEILAARVNKPTLSPNLSVLEQIEQSGMK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR+GL KFL   S  PETV+HYE
Sbjct: 167 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRDGLQKFLDTTSRSPETVVHYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 227 FMQDFRVHFKHEDGSTETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 286

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV+N LE  P +S GDRR  V +++ A D       
Sbjct: 287 W--------QWIVVRNDTGQEMLDLVQNQLETQPVMSKGDRRNAVQQSIPAYDKGVT--- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GP+GLE+AR+S+D H  RNYL+V R   +K  ++H+P YA
Sbjct: 336 ----LPMWAAKLMGVVIERIGPQGLEYARFSIDSHFTRNYLYVKRNHPEK-LEEHVPEYA 390

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 391 KRIVGQY 397


>gi|86605899|ref|YP_474662.1| coenzyme F420 hydrogenase/dehydrogenase family protein
           [Synechococcus sp. JA-3-3Ab]
 gi|86554441|gb|ABC99399.1| coenzyme F420 hydrogenase/dehydrogenase family protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 402

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 213/307 (69%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L +G+VE VVCVQ+DP DR  PRPVLARTPE VLAA+  KPTLSPNL+ L  VE +G+KR
Sbjct: 108 LSSGLVEGVVCVQADPRDRFQPRPVLARTPEAVLAARVNKPTLSPNLSVLEQVEQSGLKR 167

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+VE +L LEKLYVLGT CVDN +R GL KFL+  S  P+TV+HYEF
Sbjct: 168 LLVIGVGCQIQALRAVEKNLGLEKLYVLGTPCVDNVSRAGLQKFLETTSRSPQTVVHYEF 227

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+ VH KH DG +E+VP+F L   +L DV APSC +CFDY N+LADLVVGYMG P   
Sbjct: 228 MQDFHVHFKHEDGSVEKVPFFGLKTKELKDVFAPSCLTCFDYVNSLADLVVGYMGSPFGW 287

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN RG+E+L LV   LE  P IS G RR  V + ++A + A      
Sbjct: 288 --------QWLLVRNARGRELLDLVWEELETQPVISRGSRRAAVQQGIQAYEQAL----- 334

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  L+A  I   GP+GLE+AR+S+D H +RNYL+V R +  K  ++H+P +A+
Sbjct: 335 --SLPMWLAQLLAVAIQRFGPRGLEYARFSIDSHFVRNYLYVRRHYPHK-LEQHVPPFAR 391

Query: 302 KIVEMYN 308
           +IVE Y 
Sbjct: 392 RIVEQYQ 398


>gi|422301428|ref|ZP_16388796.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
 gi|389790684|emb|CCI13466.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9806]
          Length = 397

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 172/308 (55%), Positives = 209/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK  L+    +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLELVKAQLDTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMYN 308
           KKIVE Y 
Sbjct: 387 KKIVEQYK 394


>gi|425452531|ref|ZP_18832348.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
 gi|389765618|emb|CCI08525.1| conserved hypothetical protein [Microcystis aeruginosa PCC 7941]
          Length = 397

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 172/307 (56%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLDRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIMVRNDTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|218246210|ref|YP_002371581.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257059259|ref|YP_003137147.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Cyanothece sp. PCC 8802]
 gi|218166688|gb|ACK65425.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. PCC 8801]
 gi|256589425|gb|ACV00312.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. PCC 8802]
          Length = 401

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 210/308 (68%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+ P+DR  P P++A+T EE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 106 MLTQGLVEGVVCVQNTPEDRFQPMPIIAKTTEEILAARVNKPTLSPNLSILEQVEQSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLY+LGT CVDN TREGL  FL+  S  PETV+HYE
Sbjct: 166 RLLVIGVGCQIQALRAVEKKLGLEKLYILGTPCVDNVTREGLQTFLQTTSKSPETVIHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG    
Sbjct: 226 FMQDFRVHFKHEDGSIEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAEFG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNE G+EML+LV+  ++  P IS GDR+  V +++ A D       
Sbjct: 286 W--------QWIMVRNETGREMLALVEEQIDTKPVISQGDRKQAVQQSIPAYDKGVT--- 334

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL++ R   +K AD H+P YA
Sbjct: 335 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYLKRNHPEKLAD-HVPEYA 389

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 390 KRIVNQYQ 397


>gi|425465794|ref|ZP_18845101.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9809]
 gi|389831913|emb|CCI24943.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9809]
          Length = 397

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSMEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L+    +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIMVRNDTGKEMLELVKDQLDTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|425442236|ref|ZP_18822491.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9717]
 gi|389716834|emb|CCH98976.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9717]
          Length = 397

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSMEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L+    +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIMVRNDTGKEMLELVKDQLDTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|425447724|ref|ZP_18827707.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
 gi|389731640|emb|CCI04319.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9443]
          Length = 397

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLARGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH +H DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFQHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|440755865|ref|ZP_20935066.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunit family
           protein [Microcystis aeruginosa TAIHU98]
 gi|440173087|gb|ELP52545.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunit family
           protein [Microcystis aeruginosa TAIHU98]
          Length = 295

 Score =  337 bits (864), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 1   MLDRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 60

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 61  RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 120

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 121 FMQDFRVHFKHEDGSMEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPF- 179

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 180 -------GWQWIVVRNDTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 229

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 230 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 284

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 285 KKIVEQY 291


>gi|434391958|ref|YP_007126905.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Gloeocapsa sp. PCC 7428]
 gi|428263799|gb|AFZ29745.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Gloeocapsa sp. PCC 7428]
          Length = 401

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/312 (54%), Positives = 210/312 (67%), Gaps = 16/312 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 106 MLNRGVVEGVVCVQNTKEDRFQPMPIIARTPEEILAARVNKPTLSPNLSILEQVEQSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 166 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPDTVVHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 226 FMQDFRVHFKHEDGSEETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+EML LV++ LE  P +S GDR   V +++ A D       
Sbjct: 286 W--------QWIVVRNDRGQEMLDLVQDQLETQPVMSKGDRTAAVQQSIPAYDKGVT--- 334

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P +A
Sbjct: 335 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRHYPEKLA-AHVPEFA 389

Query: 301 KKIVEMYNQNGQ 312
           K+IV  Y    Q
Sbjct: 390 KRIVNQYKLPSQ 401


>gi|390438179|ref|ZP_10226671.1| conserved hypothetical protein [Microcystis sp. T1-4]
 gi|389838407|emb|CCI30795.1| conserved hypothetical protein [Microcystis sp. T1-4]
          Length = 397

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH +G IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHENGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L+    +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIMVRNDTGKEMLELVKDQLDTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|307151243|ref|YP_003886627.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306981471|gb|ADN13352.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. PCC 7822]
          Length = 397

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 208/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  GMVE VVCVQ+  +DR  P P+LA TPE++LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLTRGMVEGVVCVQNTKEDRFQPMPILATTPEQILAARVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +REGL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVSREGLQKFLETTSKSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSIETVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV++ +E    +SSGDRR  V  ++ A D       
Sbjct: 283 W--------QWIVVRNDTGREMLDLVRDQIETQGVMSSGDRRQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIERIGPKGLEYARFSIDSHYTRNYLFVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVGQYK 394


>gi|332710426|ref|ZP_08430373.1| coenzyme F420-reducing hydrogenase, beta subunit [Moorea producens
           3L]
 gi|332350757|gb|EGJ30350.1| coenzyme F420-reducing hydrogenase, beta subunit [Moorea producens
           3L]
          Length = 401

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 211/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK G VE VVCVQ+  +DR  P P++ARTPEEVLAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 107 MLKQGKVEGVVCVQNTEEDRFQPMPIIARTPEEVLAARVNKPTLSPNLSVLEQVEQSGMK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALRSV++ L LEKLYVLGT CVDN  REGL KFL+  S  PETV+HYE
Sbjct: 167 RLLVIGVGCQIQALRSVQNELGLEKLYVLGTPCVDNVNREGLQKFLETTSRSPETVVHYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE+VP+F L  N L DV A SC SCFDY N+LADLVVGYMG P  
Sbjct: 227 FMQDFRIHFKHEDGSIEKVPFFGLKTNQLKDVFASSCMSCFDYVNSLADLVVGYMGAPFG 286

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV++ LE  P +S GDR+  V +++ A D       
Sbjct: 287 W--------QWILVRNDIGQEMLDLVQDQLETQPVMSKGDRKQAVQQSIPAYDKGVT--- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL++ R   +K  + H+P YA
Sbjct: 336 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYLKRNHPQK-LEAHVPEYA 390

Query: 301 KKIVEMY 307
           K+IVE Y
Sbjct: 391 KRIVEQY 397


>gi|443669256|ref|ZP_21134490.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunitfamily protein
           [Microcystis aeruginosa DIANCHI905]
 gi|159027297|emb|CAO86839.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|443330451|gb|ELS45165.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunitfamily protein
           [Microcystis aeruginosa DIANCHI905]
          Length = 397

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLDRGLVEGVVCVQNTAEDRFQPQPILARTIEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH +H DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFQHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A+ H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLAN-HVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|209524048|ref|ZP_03272599.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Arthrospira maxima CS-328]
 gi|376004211|ref|ZP_09781958.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
           containing protein [Arthrospira sp. PCC 8005]
 gi|209495423|gb|EDZ95727.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Arthrospira maxima CS-328]
 gi|375327417|emb|CCE17711.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain
           containing protein [Arthrospira sp. PCC 8005]
          Length = 400

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P+LARTPEEVLAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 106 MLNQGIVEGVVCVQNTKEDRFGPMPILARTPEEVLAARVNKPTLSPNLSVLEEVERSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+VE  + LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 166 KLLVIGVGCQIQALRAVEKQMGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 226 FMQDFRVHFKHEDGSTETVPFFGLKTNQLKDIFAPSCLSCFDYVNSLADLVVGYMGAPFG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+EML L+++ L+  P  S GDRR  V +++ A D A     
Sbjct: 286 W--------QWIVVRNDRGQEMLDLIQDQLDTQPVSSQGDRRAAVQQSIPAYDKAVT--- 334

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P +A
Sbjct: 335 ----IPMWAAKMMGVVIERIGPKGLEYARFSIDSHYTRNYLYVKRNYPEK-LENHVPDFA 389

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 390 KRIVAQY 396


>gi|425457410|ref|ZP_18837113.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
 gi|389801237|emb|CCI19572.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9807]
          Length = 397

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLDRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH +H DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFQHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|427717858|ref|YP_007065852.1| coenzyme F420 hydrogenase [Calothrix sp. PCC 7507]
 gi|427350294|gb|AFY33018.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Calothrix sp. PCC 7507]
          Length = 402

 Score =  337 bits (863), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 107 MLNRGIVEGVVCVQNTKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSVLEQIEQSGMK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 167 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPDTVVHYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 227 FMQDFRVHFKHEDGSTETVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 286

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ ++  P +S G+R+  V +++ A D       
Sbjct: 287 W--------QWIVVRNDTGKEMLDLVKDQIDTQPVMSQGNRKEAVQQSIPAYDKGVT--- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R +G+K  + H+P +A
Sbjct: 336 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYGEK-LEAHVPEFA 390

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 391 KRIVGQY 397


>gi|425438251|ref|ZP_18818656.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
 gi|389676634|emb|CCH94392.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9432]
          Length = 397

 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH +H DG IE VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFQHEDGSIEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN  GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIVVRNNTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|425460813|ref|ZP_18840294.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
 gi|389826458|emb|CCI23007.1| conserved hypothetical protein [Microcystis aeruginosa PCC 9808]
          Length = 397

 Score =  336 bits (862), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 171/307 (55%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P+LART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLDRGLVEGVVCVQNTAEDRFQPQPILARTTEEILAAKVNKPTLSPNLSVLEEIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRSGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSMEMVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L     +SSGDR+  V  ++ A D       
Sbjct: 283 W--------QWIMVRNDTGKEMLELVKDQLNTQDVMSSGDRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P YA
Sbjct: 332 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEYA 386

Query: 301 KKIVEMY 307
           KKIVE Y
Sbjct: 387 KKIVEQY 393


>gi|409991447|ref|ZP_11274708.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Arthrospira platensis str.
           Paraca]
 gi|291566576|dbj|BAI88848.1| 3,8-divinyl protochlorophyllide/chlorophyllide reductase
           [Arthrospira platensis NIES-39]
 gi|409937698|gb|EKN79101.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Arthrospira platensis str.
           Paraca]
          Length = 400

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/307 (54%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PVLARTPEEVLAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 106 MLNQGIVEGVVCVQNTKEDRFGPMPVLARTPEEVLAARVNKPTLSPNLSVLEEVERSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+VE  + LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 166 KLLVIGVGCQIQALRAVEKQMGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 226 FMQDFRVHFKHEDGSTETVPFFGLKTNQLKDIFAPSCLSCFDYVNSLADLVVGYMGAPFG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+EML L+++ L+  P  S GDR   V +++ A D A     
Sbjct: 286 W--------QWIVVRNDRGQEMLDLIQDQLDTQPVSSKGDRHQAVQQSIPAYDKAVT--- 334

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  D H+P +A
Sbjct: 335 ----IPMWAAKMMGVVIERIGPKGLEYARFSIDSHYTRNYLYVKRNYPEK-LDNHVPDFA 389

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 390 KRIVAQY 396


>gi|17229093|ref|NP_485641.1| hypothetical protein all1601 [Nostoc sp. PCC 7120]
 gi|20141923|sp|P46015.2|Y1601_ANASP RecName: Full=Uncharacterized protein all1601
 gi|17135421|dbj|BAB77967.1| all1601 [Nostoc sp. PCC 7120]
          Length = 397

 Score =  336 bits (861), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNHGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFKHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV+N L+  P +S G+R+  V + + A D       
Sbjct: 283 W--------QWILVRNDTGKEMLDLVQNQLDTQPVMSEGNRQEAVQQGISAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GPKGLE+AR+S+D H  RNYL V R   +K A  H+P +A
Sbjct: 332 ----LPMWVAKIMGVVIDKIGPKGLEYARFSIDSHFTRNYLFVKRNHPEKLA-AHVPEFA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGQY 393


>gi|440684233|ref|YP_007159028.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Anabaena cylindrica PCC 7122]
 gi|428681352|gb|AFZ60118.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Anabaena cylindrica PCC 7122]
          Length = 397

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 212/309 (68%), Gaps = 18/309 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTP E+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTKEDRFQPMPIIARTPAEILAAKVNKPTLSPNLSVLEQIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+ YE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVSYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP-K 179
           FMQD++VH KH DG  E VP+F L  N L D+ APSC SCFDY N+LAD+VVGYMG P K
Sbjct: 223 FMQDFRVHFKHEDGSEETVPFFGLKTNVLKDIFAPSCMSCFDYVNSLADIVVGYMGAPFK 282

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
           +         Q+I VRN+ GKEML LVK+ ++  P +S GDR+P V +++ A D A    
Sbjct: 283 W---------QWIVVRNDTGKEMLELVKDQIDTQPVMSKGDRKPAVQQSIPAYDQAVT-- 331

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
                 P +   L+   I+ +GPKGLE+AR+S+D H  RNYL+V R  G+K  + H+P +
Sbjct: 332 -----LPMWAAKLMGVVIDKIGPKGLEYARFSIDSHFARNYLYVKRNHGEK-LEAHVPEF 385

Query: 300 AKKIVEMYN 308
           AK+IV  Y 
Sbjct: 386 AKRIVGQYK 394


>gi|427711257|ref|YP_007059881.1| coenzyme F420-reducing hydrogenase subunit beta [Synechococcus sp.
           PCC 6312]
 gi|427375386|gb|AFY59338.1| coenzyme F420-reducing hydrogenase, beta subunit [Synechococcus sp.
           PCC 6312]
          Length = 404

 Score =  335 bits (860), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/307 (55%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G VE VVCVQ+ P+DR  PRP++ARTP E+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 109 MLNQGWVEGVVCVQNTPEDRFQPRPIIARTPAEILAARVNKPTLSPNLSVLEEIEKSGLK 168

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL   S  P+TV++YE
Sbjct: 169 RLLVIGVGCQIQALRAVEDKLGLEKLYVLGTPCVDNVTRAGLQKFLDTTSRSPDTVIYYE 228

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L   +L DV APSC SCFDY N LADLVVGYMG P  
Sbjct: 229 FMQDFRVHFKHEDGSTETVPFFGLNTKELKDVFAPSCMSCFDYVNGLADLVVGYMGAPF- 287

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+ITVRN+ G+EMLSLV++ LE  P IS G+R+  V +++ A D       
Sbjct: 288 -------GWQWITVRNQTGREMLSLVQDQLETQPMISQGNRQAAVQQSIPAYDKGVT--- 337

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL+  R +  K A  H+P +A
Sbjct: 338 ----LPMWAAKLMGVVIEKVGPKGLEYARFSIDSHFTRNYLYTLRNYPSKLA-AHVPEFA 392

Query: 301 KKIVEMY 307
           KKIV+ Y
Sbjct: 393 KKIVDQY 399


>gi|414079287|ref|YP_007000711.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Anabaena sp.
           90]
 gi|413972566|gb|AFW96654.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Anabaena sp.
           90]
          Length = 397

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPEE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNSKEDRFQPMPIIARTPEEILAAKVNKPTLSPNLSVLEQIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+ YE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPQTVVSYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L D+ APSC SCFDY N+LAD+VVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSEETVPFFGLKTNVLKDIFAPSCMSCFDYVNSLADIVVGYMGAP-- 280

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ L   P  S G+R+P V +++ A D A     
Sbjct: 281 ------YQWQWIVVRNDTGKEMLELVKDQLHTQPVTSQGNRKPAVQQSIPAYDQAVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I+ +GPKGLE+AR+S+D H  RNYL+V R  G+K  + H+P +A
Sbjct: 332 ----LPMWAAKLMGVVIDKIGPKGLEYARFSIDSHFARNYLYVKRNHGEK-LEAHVPEFA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGQY 393


>gi|428216898|ref|YP_007101363.1| coenzyme F420 hydrogenase [Pseudanabaena sp. PCC 7367]
 gi|427988680|gb|AFY68935.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Pseudanabaena sp. PCC 7367]
          Length = 396

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+  +VE VVCVQS   DR  P+PV+ART  EVLAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 101 MLEHKLVEGVVCVQSASHDRFQPKPVIARTAAEVLAARVNKPTLSPNLSVLEEIEQSGIK 160

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R GLDKFL   S  PETV+HYE
Sbjct: 161 RLLVIGVGCQIQALRTVEKELGLEKLYVLGTPCVDNVSRAGLDKFLNTTSRSPETVVHYE 220

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ VH KH DG IE VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 221 FMQDFNVHFKHEDGSIEMVPFFGLNTKELKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 280

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV++ L+  P  +SGDR   V + + A DNA     
Sbjct: 281 W--------QWIVVRNDTGKEMLDLVQDQLKTQPVDASGDRAAAVQQGIAAYDNATT--- 329

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P ++  +I+F +N +GPKGLE+ R+S+D H IRNYL+  R + +K A  H+P +A
Sbjct: 330 ----IPIWLAWIISFVVNKIGPKGLEYGRFSIDSHFIRNYLYTRRNYPQKLA-AHVPEFA 384

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 385 KRIVARY 391


>gi|172039575|ref|YP_001806076.1| hypothetical protein cce_4662 [Cyanothece sp. ATCC 51142]
 gi|354552165|ref|ZP_08971473.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. ATCC 51472]
 gi|171701029|gb|ACB54010.1| unknown [Cyanothece sp. ATCC 51142]
 gi|353555487|gb|EHC24875.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanothece sp. ATCC 51472]
          Length = 398

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/308 (55%), Positives = 209/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+  +DR  P PV+ART EEVLAA+  KPTLSPNL+ L  +E + +K
Sbjct: 103 MLEKGLVEGVVCVQNTKEDRFQPMPVIARTSEEVLAARVNKPTLSPNLSILEQIEKSNLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TREGL KFL+  S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVTREGLQKFLETTSQSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG    
Sbjct: 223 FMQDFRVHFKHEDGSVEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGA--- 279

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEMLSLV++ +   P IS GDR+  V +++ A D       
Sbjct: 280 -----EFGWQWIMVRNDTGKEMLSLVEDQINTKPVISQGDRKQAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL+V R   +K  D H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIEKVGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LDNHVPDYA 386

Query: 301 KKIVEMYN 308
           KKIV  Y 
Sbjct: 387 KKIVSQYQ 394


>gi|86608737|ref|YP_477499.1| coenzyme F420 hydrogenase/dehydrogenase family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557279|gb|ABD02236.1| coenzyme F420 hydrogenase/dehydrogenase family protein
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 402

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 209/307 (68%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L TG+VE VVCVQ+D  DR  PRP+LARTPE V AA+  KPTLSPNL+ L  VE +G+KR
Sbjct: 108 LTTGLVEGVVCVQADERDRFQPRPILARTPEAVWAARVNKPTLSPNLSVLEQVEQSGLKR 167

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R GL KFL+  S  P+TV+HYEF
Sbjct: 168 LLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVSRAGLQKFLETTSRSPQTVVHYEF 227

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+ +H KH DG +E+VP+F L   +L DV APSC SCFDY NALADLVVGYMG P   
Sbjct: 228 MQDFHIHFKHEDGSVEKVPFFGLKTKELKDVFAPSCLSCFDYVNALADLVVGYMGSPLGW 287

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN+RG+E+L LV   LE  P IS G RR  V + + A D A      
Sbjct: 288 --------QWLLVRNQRGQELLDLVWEELETQPVISQGSRRAAVQQGIPAYDQAL----- 334

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  L+   I   GP+GLE+AR+S+D H  RNYL+V R + +K  ++H+P +A+
Sbjct: 335 --SLPMWLARLLGAAIQRFGPRGLEYARFSIDSHFTRNYLYVRRHYPQK-LEQHVPPFAR 391

Query: 302 KIVEMYN 308
           +IVE Y 
Sbjct: 392 RIVEQYQ 398


>gi|282898594|ref|ZP_06306582.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196462|gb|EFA71371.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Cylindrospermopsis raciborskii CS-505]
          Length = 401

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 168/309 (54%), Positives = 213/309 (68%), Gaps = 18/309 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPE +LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLNRGLVEGVVCVQNSQEDRFQPMPIIARTPEAILAAKVNKPTLSPNLSVLEEIEQSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P TV+ YE
Sbjct: 165 KLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPGTVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E+VP+F L  N L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFRVHFKHEDGSEEKVPFFGLKTNILKDIFAPSCMSCFDYVNSLADLVVGYMGAP-- 282

Query: 181 TGISMTQHP-QYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +P Q+I VRN+ GK+ML LVK  LEI P +S G+R+P V + +KA D+A    
Sbjct: 283 -------YPWQWIVVRNDTGKQMLDLVKEQLEIQPVMSQGNRQPAVQQGIKAYDDAVT-- 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
                 P +V  L+   I+ +GPKGLE+ ++S+D H  RNYL+V R   +K  + H+P +
Sbjct: 334 -----LPMWVAQLMGIVIDRIGPKGLEYGKFSIDSHFARNYLYVKRHHPQK-LEAHVPEF 387

Query: 300 AKKIVEMYN 308
           AK+IV  YN
Sbjct: 388 AKRIVAQYN 396


>gi|427706065|ref|YP_007048442.1| coenzyme F420 hydrogenase [Nostoc sp. PCC 7107]
 gi|427358570|gb|AFY41292.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Nostoc sp. PCC 7107]
          Length = 397

 Score =  334 bits (856), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 211/307 (68%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFKHSDGSIEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LVK+ ++  P +S G+R+  V + + A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLDLVKDQIDTQPVMSQGNRQEAVQQGIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 332 ----LPMWVAKMMGVVIDKIGPKGLEYARFSIDSHFTRNYLYVKRNHHEK-LEAHVPEFA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGQY 393


>gi|428220142|ref|YP_007104312.1| coenzyme F420-reducing hydrogenase subunit beta [Synechococcus sp.
           PCC 7502]
 gi|427993482|gb|AFY72177.1| coenzyme F420-reducing hydrogenase, beta subunit [Synechococcus sp.
           PCC 7502]
          Length = 396

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML +G VE VVCVQ+   DR +P+P++A TPEE+LAA+  KPTLSPNL+ L LVE +G+K
Sbjct: 101 MLTSGKVEGVVCVQASDSDRFTPKPIIATTPEEILAARVNKPTLSPNLSVLELVERSGMK 160

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN  R GL KFL   S  P TV+ YE
Sbjct: 161 RLLVIGVGCQIQALRTVEKQLGLEKLYVLGTPCVDNVNRAGLQKFLDTTSRSPSTVVSYE 220

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ VH KH DG  E VP+F L   +L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 221 FMQDFNVHFKHEDGSTEMVPFFGLNTKELKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 280

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML  V++ LE  P +SSGDR   V + + A DNA     
Sbjct: 281 W--------QWIVVRNDTGKEMLESVQSQLESQPVMSSGDRHSAVQQGIAAYDNATT--- 329

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V ++I F +N +GPKGLE+ R+S+D H IRNYL+  R + +K  + H+P +A
Sbjct: 330 ----LPMWVASIINFVVNKIGPKGLEYGRFSIDSHFIRNYLYTKRNYPQK-LEAHVPEFA 384

Query: 301 KKIVEMY 307
           K+I+  Y
Sbjct: 385 KRIIAQY 391


>gi|254412391|ref|ZP_05026165.1| Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminal
           domain family protein [Coleofasciculus chthonoplastes
           PCC 7420]
 gi|196180701|gb|EDX75691.1| Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminal
           domain family protein [Coleofasciculus chthonoplastes
           PCC 7420]
          Length = 414

 Score =  333 bits (853), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 208/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML +G VE VVCVQ+  +DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 120 MLTSGKVEGVVCVQNTKEDRFQPMPIIARTPEEILAARVNKPTLSPNLSVLEQIEQSGMK 179

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 180 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVTRAGLQKFLETTSKSPDTVVHYE 239

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 240 FMQDFQVHFKHEDGSIEKVPFFGLNTKELKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 299

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+EML LV+N LE     S GDR   V +++ A D       
Sbjct: 300 W--------QWIVVRNDRGQEMLDLVQNQLETQSVTSKGDRHQAVQQSIPAYDKGVT--- 348

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K A  H+P +A
Sbjct: 349 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRHHPEKLA-AHIPEFA 403

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 404 KRIVGQYT 411


>gi|428215878|ref|YP_007089022.1| coenzyme F420-reducing hydrogenase subunit beta [Oscillatoria
           acuminata PCC 6304]
 gi|428004259|gb|AFY85102.1| coenzyme F420-reducing hydrogenase, beta subunit [Oscillatoria
           acuminata PCC 6304]
          Length = 401

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 207/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+ P+DR  P P+LART  EVLAAK  KPTLSPNL+ L  VE +G+K
Sbjct: 106 MLDRGLVEGVVCVQNTPEDRFGPMPILARTKAEVLAAKVNKPTLSPNLSVLEQVEQSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALRSV+  L LEKLYVLGT CVDN +REGL KFL+  S  PETV+HYE
Sbjct: 166 RLLVIGVGCQIQALRSVQKELGLEKLYVLGTPCVDNVSREGLQKFLETTSKSPETVVHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 226 FMQDFRIHFKHEDGSIEKVPFFGLNTKELKDVFAPSCLSCFDYVNSLADLVVGYMGAPYG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV   LE  P +S GDR   V +++ A +       
Sbjct: 286 W--------QWIVVRNQTGQEMLDLVTEQLETQPVMSRGDRHAAVQQSIPAYEKGVT--- 334

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 335 ----LPMWAAKLMGVAIERIGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LEAHVPEFA 389

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 390 KQIVSQYQ 397


>gi|158335991|ref|YP_001517165.1| coenzyme F420 hydrogenase subunit beta [Acaryochloris marina
           MBIC11017]
 gi|158306232|gb|ABW27849.1| coenzyme F420 hydrogenase beta subunit [Acaryochloris marina
           MBIC11017]
          Length = 399

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 206/308 (66%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK G V+ VVC+Q+  +DR  P+P++ARTPEEVLAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLKQGKVDGVVCIQNTDEDRFQPKPIIARTPEEVLAARVNKPTLSPNLSVLEQIEQSGLK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GVGCQ QALRSV+  L LEKLYVLGT CVDN  R GL  FL+  S  P+TV+HYE
Sbjct: 165 RLCVIGVGCQTQALRSVQDSLGLEKLYVLGTPCVDNVNRAGLQTFLETTSRSPDTVVHYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE VP+F L  N L D+ APSC SCFDYTN+LADLVVGYMG P  
Sbjct: 225 FMQDFRIHFKHEDGSIETVPFFGLKTNKLKDIFAPSCMSCFDYTNSLADLVVGYMGSP-- 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRNE G+EML LV + LE  P IS GDR   V  ++ A D       
Sbjct: 283 ------YGWQWLVVRNETGQEMLDLVMDQLETQPVISEGDRHAAVQNSIPAYDKGVT--- 333

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I+ +GP+GLE+AR+S+D H  RNYL+V R +  K  D H+P YA
Sbjct: 334 ----LPMWAAKLMGVVIDKIGPRGLEYARFSIDSHFTRNYLYVKRNYPDK-VDAHVPEYA 388

Query: 301 KKIVEMYN 308
           K+IV  Y+
Sbjct: 389 KRIVSQYD 396


>gi|359460880|ref|ZP_09249443.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Acaryochloris sp. CCMEE 5410]
          Length = 397

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 206/308 (66%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK G V+ VVC+Q+  +DR  P+P++ARTPEEVLAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLKQGKVDGVVCIQNTDEDRFQPKPIIARTPEEVLAARVNKPTLSPNLSVLEQIEQSGLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GVGCQ QALRSV+  L LEKLYVLGT CVDN  R GL  FL+  S  P+TV+HYE
Sbjct: 163 RLCVIGVGCQTQALRSVQDSLGLEKLYVLGTPCVDNVNRAGLQTFLETTSRSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE VP+F L  N L D+ APSC SCFDYTN+LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFKHEDGSIETVPFFGLKTNKLKDIFAPSCMSCFDYTNSLADLVVGYMGSP-- 280

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRNE G+EML LV + LE  P IS GDR   V  ++ A D       
Sbjct: 281 ------YGWQWLVVRNETGQEMLDLVMDQLETQPVISEGDRHAAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I+ +GP+GLE+AR+S+D H  RNYL+V R +  K  D H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIDKIGPRGLEYARFSIDSHFTRNYLYVKRNYPDK-VDAHVPEYA 386

Query: 301 KKIVEMYN 308
           K+IV  Y+
Sbjct: 387 KRIVSQYD 394


>gi|186685427|ref|YP_001868623.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Nostoc
           punctiforme PCC 73102]
 gi|186467879|gb|ACC83680.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Nostoc punctiforme PCC 73102]
          Length = 397

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 207/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLNRGLVEGVVCVQNTKEDRFQPMPIIARTPEEILAARVNKPTLSPNLSVLEQIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN  R GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVNRAGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSSETVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV++ L+  P  S G+R+  V +++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLDLVQDQLDTQPVTSKGNRKEAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 332 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LEAHVPEFA 386

Query: 301 KKIVEMY 307
           K+IVE Y
Sbjct: 387 KRIVEQY 393


>gi|282898451|ref|ZP_06306441.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Raphidiopsis brookii D9]
 gi|281196617|gb|EFA71523.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Raphidiopsis brookii D9]
          Length = 401

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/312 (54%), Positives = 212/312 (67%), Gaps = 18/312 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPE +LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLNCGLVEGVVCVQNSQEDRFQPMPIIARTPEAILAAKVNKPTLSPNLSVLEEIEQSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P TV+ YE
Sbjct: 165 KLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRTGLQKFLETTSHSPGTVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E+VP+F L  N L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFRVHFKHEDGSEEKVPFFGLKTNILKDIFAPSCMSCFDYVNSLADLVVGYMGAP-- 282

Query: 181 TGISMTQHP-QYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +P Q+I VRN  GKEML LVK  LEI P +S G+R+P V + +KA D+A    
Sbjct: 283 -------YPWQWIVVRNNTGKEMLDLVKEQLEIQPVMSQGNRQPAVQQGIKAYDDAVT-- 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
                 P +V  L+   I+ +GPKGLE+ ++S+D H  RNYL+V R    K  + H+P +
Sbjct: 334 -----LPMWVAQLMGIVIDRIGPKGLEYGKFSIDSHFARNYLYVKRHHPHK-LEAHVPEF 387

Query: 300 AKKIVEMYNQNG 311
           AK+IV  Y+  G
Sbjct: 388 AKRIVAQYDLPG 399


>gi|119487009|ref|ZP_01620881.1| hypothetical protein L8106_18871 [Lyngbya sp. PCC 8106]
 gi|119455938|gb|EAW37072.1| hypothetical protein L8106_18871 [Lyngbya sp. PCC 8106]
          Length = 400

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 167/308 (54%), Positives = 207/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 106 MLTQGIVEGVVCVQNTKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSVLEEIEKSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 166 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVTRAGLQKFLETTSKSPETVVHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L   +L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 226 FMQDFRVHFKHEDGSIEKVPFFGLNTKELKDIFAPSCLSCFDYVNSLADLVVGYMGAPFG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV   L+  P  S G R+P V +++ A D       
Sbjct: 286 W--------QWIVVRNDTGKEMLDLVSGQLDTQPVHSEGKRQPAVQQSIPAYDKGVT--- 334

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 335 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LEAHVPEFA 389

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 390 KRIVGQYE 397


>gi|126655028|ref|ZP_01726467.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Cyanothece sp. CCY0110]
 gi|126622507|gb|EAZ93212.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Cyanothece sp. CCY0110]
          Length = 398

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/308 (54%), Positives = 209/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ART EEVLAA+  KPTLSPNL+ L  ++ + +K
Sbjct: 103 MLDKGIVEGVVCVQNTKEDRFQPMPVIARTSEEVLAARVNKPTLSPNLSILEQIKESNLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L L+KLYVLGT CVDN TREGL KFL+  S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRTVEKELGLKKLYVLGTPCVDNVTREGLQKFLETTSQSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG    
Sbjct: 223 FMQDFRVHFKHEDGSIEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAEFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN++GKEM +LV++ +   P IS GDR+  V +++ A D       
Sbjct: 283 W--------QWIMVRNDKGKEMFALVEDQINTKPVISQGDRKQAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL+V R   +K  D H+P+YA
Sbjct: 332 ----LPMWAAKLMGVVIERVGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LDNHVPNYA 386

Query: 301 KKIVEMYN 308
           KKIV  Y 
Sbjct: 387 KKIVSQYQ 394


>gi|56750204|ref|YP_170905.1| hypothetical protein syc0195_d [Synechococcus elongatus PCC 6301]
 gi|81300168|ref|YP_400376.1| coenzyme F420 hydrogenase [Synechococcus elongatus PCC 7942]
 gi|56685163|dbj|BAD78385.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81169049|gb|ABB57389.1| coenzyme F420 hydrogenase [Synechococcus elongatus PCC 7942]
          Length = 401

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 208/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G VE VVCVQ+ P DR  P PV+ART +E+LAA+  KPTLSPNLN L L+E +G+K
Sbjct: 103 MLEQGWVEGVVCVQNSPSDRFQPMPVIARTTDEILAARVNKPTLSPNLNILDLIEQSGLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+V+  L L+KLYVLGT CVDN +R GL KFL+  S  PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVQDKLGLDKLYVLGTPCVDNVSRAGLQKFLETTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H KH DG IE VP+F L   +L DV APSC SCFDYTN LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFKHEDGSIEMVPFFGLKTKELKDVFAPSCLSCFDYTNGLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRNE G+EM  L+++ L + P  SSGDRR  V  ++ A +       
Sbjct: 283 W--------QWLVVRNEIGQEMFDLIQDDLRLQPVQSSGDRRAAVQNSIPAYEQGVQ--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RN L+V R + +K A+ H+P +A
Sbjct: 332 ----LPMWAAKLMGLVIERIGPKGLEYARFSIDSHFTRNALYVRRNYPEK-AETHIPEFA 386

Query: 301 KKIVEMYN 308
           K+IV  Y 
Sbjct: 387 KRIVSQYQ 394


>gi|411116284|ref|ZP_11388772.1| coenzyme F420-reducing hydrogenase, beta subunit [Oscillatoriales
           cyanobacterium JSC-12]
 gi|410713775|gb|EKQ71275.1| coenzyme F420-reducing hydrogenase, beta subunit [Oscillatoriales
           cyanobacterium JSC-12]
          Length = 403

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/313 (53%), Positives = 206/313 (65%), Gaps = 16/313 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  GMVE VVCVQ+  +DR  P+PV+ART +E+LAA+  KPTLSPNL+ L  +E + +K
Sbjct: 107 MLTRGMVEGVVCVQNTEEDRFQPKPVIARTTDEILAARVNKPTLSPNLSVLEQIEQSNMK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL   S  P TV+HYE
Sbjct: 167 RLLVIGVGCQIQALRTVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLDTTSRSPSTVIHYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 227 FMQDFRVHFKHEDGSTEMVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 286

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+EML LV++ +   P +S GDR+  V  ++ A D       
Sbjct: 287 W--------QWIVVRNDRGQEMLDLVRDQIATQPVMSQGDRKQAVQNSIPAYDKGVT--- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL+V R   +K  + H+P YA
Sbjct: 336 ----LPMWAAKLMGVVIERVGPKGLEYARFSIDSHFTRNYLYVKRHHPEK-LESHVPEYA 390

Query: 301 KKIVEMYNQNGQI 313
           K+IV  Y   G+ 
Sbjct: 391 KRIVSQYKLPGRF 403


>gi|416384585|ref|ZP_11684662.1| Coenzyme F420-reducing hydrogenase-like protein [Crocosphaera
           watsonii WH 0003]
 gi|357265028|gb|EHJ13841.1| Coenzyme F420-reducing hydrogenase-like protein [Crocosphaera
           watsonii WH 0003]
          Length = 404

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 167/308 (54%), Positives = 209/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+  +DR  P PV+ART EEVLAA+  KPTLSPNL+ L  +E + +K
Sbjct: 109 MLERGLVEGVVCVQNTKEDRFGPMPVIARTSEEVLAARVNKPTLSPNLSILEQIEKSNLK 168

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +REGL KFL+  S  P+TV+HYE
Sbjct: 169 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVSREGLQKFLETTSRSPDTVVHYE 228

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG    
Sbjct: 229 FMQDFRVHFKHEDGSVEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAEFG 288

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNE GKEML L+++ +   P IS G+R+  V +++ A D       
Sbjct: 289 W--------QWIMVRNETGKEMLGLIEDQINTKPVISHGNRKQAVQQSIPAYDQGVT--- 337

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL++ R   KK  + H+P+YA
Sbjct: 338 ----LPMWAAKLMGVVIERVGPKGLEYARFSIDSHFTRNYLYLKRNHPKK-LENHVPNYA 392

Query: 301 KKIVEMYN 308
           KKIV  Y 
Sbjct: 393 KKIVSQYQ 400


>gi|75910412|ref|YP_324708.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein
           [Anabaena variabilis ATCC 29413]
 gi|75704137|gb|ABA23813.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Anabaena variabilis ATCC 29413]
          Length = 397

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 166/307 (54%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNRGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPQTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+++H  H DG IE+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRIHFTHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN  GKEML LV++ L+  P +S G+R+  V + + A D       
Sbjct: 283 W--------QWILVRNNTGKEMLDLVQDQLDTQPVMSQGNRQEAVQQGISAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GPKGLE+AR+S+D H  RNYL V R   +K  + H+P +A
Sbjct: 332 ----LPMWVAKMMGVVIDKIGPKGLEYARFSIDSHFTRNYLFVKRNHPEK-LEAHVPEFA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGQY 393


>gi|67921512|ref|ZP_00515030.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit,
           N-terminal:Coenzyme F420 hydrogenase/dehydrogenase beta
           subunit, C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856624|gb|EAM51865.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit,
           N-terminal:Coenzyme F420 hydrogenase/dehydrogenase beta
           subunit, C-terminal [Crocosphaera watsonii WH 8501]
          Length = 404

 Score =  330 bits (845), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 167/308 (54%), Positives = 209/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+  +DR  P PV+ART EEVLAA+  KPTLSPNL+ L  +E + +K
Sbjct: 109 MLERGLVEGVVCVQNTKEDRFDPMPVIARTSEEVLAARVNKPTLSPNLSILEQIEKSNLK 168

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +REGL KFL+  S  P+TV+HYE
Sbjct: 169 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVSREGLQKFLETTSRSPDTVVHYE 228

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG    
Sbjct: 229 FMQDFRVHFKHEDGSVEKVPFFGLKTNKLKDVFAPSCMSCFDYVNSLADLVVGYMGAEFG 288

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNE GKEML L+++ +   P IS G+R+  V +++ A D       
Sbjct: 289 W--------QWIMVRNETGKEMLGLIEDQINTKPVISHGNRKQAVQQSIPAYDQGVT--- 337

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL++ R   KK  + H+P+YA
Sbjct: 338 ----LPMWAAKLMGVVIERVGPKGLEYARFSIDSHFTRNYLYLKRNHPKK-LENHVPNYA 392

Query: 301 KKIVEMYN 308
           KKIV  Y 
Sbjct: 393 KKIVSQYQ 400


>gi|428768872|ref|YP_007160662.1| coenzyme F420 hydrogenase [Cyanobacterium aponinum PCC 10605]
 gi|428683151|gb|AFZ52618.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanobacterium aponinum PCC 10605]
          Length = 397

 Score =  330 bits (845), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 167/307 (54%), Positives = 205/307 (66%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P++A T EE+L AK  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLTQGLVEGVVCVQNSDEDRFQPKPIIATTTEEILGAKVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  P+TV+ YE
Sbjct: 163 RLLVIGVGCQIQALRAVEDKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSKSPDTVVAYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSVEKVPFFGLKTNQLKDVFAPSCMTCFDYVNSLADLVVGYMGAPF- 281

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LVKN L   P IS GDR   V  ++ A D       
Sbjct: 282 -------GWQWIVVRNDIGREMLDLVKNQLHTQPVISRGDRTQAVQNSIPAYDQGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGPKGLE+AR+S+D H  RNYL+V R + +K  D H+P YA
Sbjct: 332 ----LPMWAAKLMGVVIEKVGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLKD-HVPEYA 386

Query: 301 KKIVEMY 307
           +KIV  Y
Sbjct: 387 EKIVSQY 393


>gi|407961454|dbj|BAM54694.1| hypothetical protein BEST7613_5763 [Bacillus subtilis BEST7613]
          Length = 405

 Score =  329 bits (844), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 208/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+ P+DR  P+ V+ARTP EVLAAK  KPTLSPNL+ L  VE +G+K
Sbjct: 110 MLNKGLVEGVVCVQNTPEDRFQPQVVIARTPAEVLAAKVNKPTLSPNLSVLEEVEKSGLK 169

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R GL KFL+  S  PETV++YE
Sbjct: 170 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVSRAGLQKFLETTSRSPETVVYYE 229

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L +V APSC SCFDY N LADLVVGYMG P  
Sbjct: 230 FMQDFRVHFKHEDGSTELVPFFGLKTNQLKEVFAPSCMSCFDYVNGLADLVVGYMGAPFG 289

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRN+ G+EML LV++ L I    SSGDR   V + + A D A     
Sbjct: 290 W--------QWLVVRNQTGQEMLDLVQDQLHIGQVSSSGDRHQAVQQGITAYDKAVT--- 338

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GP GLE+AR+S+D H  RNYL+V R   +K AD H+P +A
Sbjct: 339 ----LPMWVAKIMGLVIDKIGPTGLEYARFSIDSHFTRNYLYVKRNHPEKLAD-HVPPFA 393

Query: 301 KKIVEMYN 308
           KKIVE Y 
Sbjct: 394 KKIVEQYK 401


>gi|16331168|ref|NP_441896.1| hypothetical protein slr1923 [Synechocystis sp. PCC 6803]
 gi|383322911|ref|YP_005383764.1| hypothetical protein SYNGTI_2002 [Synechocystis sp. PCC 6803
           substr. GT-I]
 gi|383326080|ref|YP_005386933.1| hypothetical protein SYNPCCP_2001 [Synechocystis sp. PCC 6803
           substr. PCC-P]
 gi|383491964|ref|YP_005409640.1| hypothetical protein SYNPCCN_2001 [Synechocystis sp. PCC 6803
           substr. PCC-N]
 gi|384437232|ref|YP_005651956.1| hypothetical protein SYNGTS_2003 [Synechocystis sp. PCC 6803]
 gi|451815324|ref|YP_007451776.1| hypothetical protein MYO_120210 [Synechocystis sp. PCC 6803]
 gi|1653662|dbj|BAA18574.1| slr1923 [Synechocystis sp. PCC 6803]
 gi|339274264|dbj|BAK50751.1| hypothetical protein SYNGTS_2003 [Synechocystis sp. PCC 6803]
 gi|359272230|dbj|BAL29749.1| hypothetical protein SYNGTI_2002 [Synechocystis sp. PCC 6803
           substr. GT-I]
 gi|359275400|dbj|BAL32918.1| hypothetical protein SYNPCCN_2001 [Synechocystis sp. PCC 6803
           substr. PCC-N]
 gi|359278570|dbj|BAL36087.1| hypothetical protein SYNPCCP_2001 [Synechocystis sp. PCC 6803
           substr. PCC-P]
 gi|451781293|gb|AGF52262.1| hypothetical protein MYO_120210 [Synechocystis sp. PCC 6803]
          Length = 398

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/308 (55%), Positives = 208/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+ P+DR  P+ V+ARTP EVLAAK  KPTLSPNL+ L  VE +G+K
Sbjct: 103 MLNKGLVEGVVCVQNTPEDRFQPQVVIARTPAEVLAAKVNKPTLSPNLSVLEEVEKSGLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R GL KFL+  S  PETV++YE
Sbjct: 163 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVSRAGLQKFLETTSRSPETVVYYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L +V APSC SCFDY N LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSTELVPFFGLKTNQLKEVFAPSCMSCFDYVNGLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRN+ G+EML LV++ L I    SSGDR   V + + A D A     
Sbjct: 283 W--------QWLVVRNQTGQEMLDLVQDQLHIGQVSSSGDRHQAVQQGITAYDKAVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GP GLE+AR+S+D H  RNYL+V R   +K AD H+P +A
Sbjct: 332 ----LPMWVAKIMGLVIDKIGPTGLEYARFSIDSHFTRNYLYVKRNHPEKLAD-HVPPFA 386

Query: 301 KKIVEMYN 308
           KKIVE Y 
Sbjct: 387 KKIVEQYK 394


>gi|428772990|ref|YP_007164778.1| coenzyme F420 hydrogenase [Cyanobacterium stanieri PCC 7202]
 gi|428687269|gb|AFZ47129.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Cyanobacterium stanieri PCC 7202]
          Length = 398

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 207/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P+P++A T EE+L A+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLTEGLVEGVVCVQNSENDRFQPKPIIATTTEEILGARVNKPTLSPNLSVLEQIEQSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR VE  L LEKLYVLGT CVDN TREGL KFL   S  P+TV+ YE
Sbjct: 163 RLLVIGVGCQIQALREVEDKLGLEKLYVLGTPCVDNVTREGLQKFLDTTSDSPDTVVAYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGRVEKVPFFGLKTNQLKDVFAPSCMTCFDYVNSLADLVVGYMGSPF- 281

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV++ L+  P +S G+R+  V  ++ A D       
Sbjct: 282 -------GWQWIVVRNDTGKEMLDLVQDQLKTQPVMSKGNRKQAVQNSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  VGP+GLE+AR+S+D H  RNYL+V R + +K  D H+PSYA
Sbjct: 332 ----LPMWAAKLMGVVIEKVGPQGLEYARFSIDSHFTRNYLYVKRNYPEK-LDAHVPSYA 386

Query: 301 KKIVEMYN 308
           KKIV  Y 
Sbjct: 387 KKIVSQYQ 394


>gi|434404674|ref|YP_007147559.1| coenzyme F420-reducing hydrogenase, beta subunit [Cylindrospermum
           stagnale PCC 7417]
 gi|428258929|gb|AFZ24879.1| coenzyme F420-reducing hydrogenase, beta subunit [Cylindrospermum
           stagnale PCC 7417]
          Length = 399

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 206/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLNRGLVEGVVCVQNTKEDRFQPMPIIARTPEEILAARVNKPTLSPNLSVLEQIEKSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL   S  P+TV+ YE
Sbjct: 165 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLDTTSRSPDTVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFRVHFKHEDGSTETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPF- 283

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV++ L+  P +S G+R+  V +++ A D       
Sbjct: 284 -------RWQWIVVRNDTGKEMLDLVQDQLDTQPVMSQGNRKEAVQQSIPAYDKGVT--- 333

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 334 ----LPMWAAKLMGVVIERIGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LEAHVPEFA 388

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 389 KRIVGQY 395


>gi|298492095|ref|YP_003722272.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein ['Nostoc azollae' 0708]
 gi|298234013|gb|ADI65149.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           ['Nostoc azollae' 0708]
          Length = 399

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 165/309 (53%), Positives = 209/309 (67%), Gaps = 18/309 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ART EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLNRGLVEGVVCVQNTKEDRFQPMPIIARTTEEILAAKVNKPTLSPNLSVLEQIEESGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR++E  L LEKLYVLGT CVDN TR GL KFL+  S  P TV+ YE
Sbjct: 165 RLLVIGVGCQIQALRAIEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPATVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L D+ APSC SCFDY N+LAD+VVGYMG P  
Sbjct: 225 FMQDFRVHFKHEDGSEETVPFFGLKTNILKDIFAPSCMSCFDYVNSLADIVVGYMGAP-- 282

Query: 181 TGISMTQHP-QYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                   P Q+I VRN+ G+EML LVK+ LE  P +  GDR+P V + ++A D A    
Sbjct: 283 -------FPWQWILVRNDTGQEMLELVKDQLETQPVMFQGDRKPAVQQGIEAYDKAVT-- 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
                 P +V  L+   I+ +GPKGLE+ R+S+D H  RNYL+V R   +K  + H+P +
Sbjct: 334 -----LPMWVAKLMGVVIDKIGPKGLEYGRFSIDSHFARNYLYVKRNHPEK-LEAHLPEF 387

Query: 300 AKKIVEMYN 308
           A++IV  YN
Sbjct: 388 ARRIVGQYN 396


>gi|428302019|ref|YP_007140325.1| coenzyme F420 hydrogenase [Calothrix sp. PCC 6303]
 gi|428238563|gb|AFZ04353.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Calothrix sp. PCC 6303]
          Length = 404

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 207/308 (67%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  GMVE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 110 MLNRGMVEGVVCVQNTKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSVLEEIEKSGMK 169

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL   S  P+TV++YE
Sbjct: 170 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLDTTSKSPDTVVYYE 229

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 230 FMQDFRVHFKHEDGSLETVPFFGLNTKELKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 289

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRN+ GKEML LV++ +E  P  S G R+  V +++ A D       
Sbjct: 290 W--------QWLIVRNDTGKEMLELVQDQIETQPVTSQGKRQEAVQQSIPAYDKGVT--- 338

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 339 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRHHPEK-LESHVPEFA 393

Query: 301 KKIVEMYN 308
           K+IV+ Y 
Sbjct: 394 KQIVKQYK 401


>gi|119512109|ref|ZP_01631202.1| hypothetical protein N9414_07474 [Nodularia spumigena CCY9414]
 gi|119463267|gb|EAW44211.1| hypothetical protein N9414_07474 [Nodularia spumigena CCY9414]
          Length = 397

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 207/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  +E +G+ 
Sbjct: 103 MLNRGLVEGVVCVQNTKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSVLEQIEKSGMT 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL  FL+  S  P+TV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKELGLEKLYVLGTPCVDNVTRAGLQTFLETTSRSPDTVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L DV APSC +CFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFRVHFKHEDGSSETVPFFGLKTNKLKDVFAPSCMTCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ GKEML LV++ L+  P +S G+R+  V +++ A D       
Sbjct: 283 W--------QWIVVRNDTGKEMLDLVQDQLDTQPVMSQGNRKEAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+V R + +K A  H+P +A
Sbjct: 332 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVKRNYPEKLA-AHVPEFA 386

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 387 KRIVGGY 393


>gi|443322535|ref|ZP_21051555.1| coenzyme F420-reducing hydrogenase, beta subunit [Gloeocapsa sp.
           PCC 73106]
 gi|442787696|gb|ELR97409.1| coenzyme F420-reducing hydrogenase, beta subunit [Gloeocapsa sp.
           PCC 73106]
          Length = 397

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 165/308 (53%), Positives = 204/308 (66%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G VE VVCVQ+  +DR  P P+LA TPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 103 MLTQGKVEGVVCVQNTKEDRFQPMPILATTPEEILAARVNKPTLSPNLSILEQIEKSGMK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+L  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TREGL KFL   S  PETV+HYE
Sbjct: 163 RVLAIGVGCQIQALRTVEKKLGLEKLYVLGTPCVDNVTREGLQKFLDTTSRSPETVVHYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG +E+VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFQVHFKHEDGSVEKVPFFGLKTNQLKDVFAPSCLSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRN+ G+EML LV   LE    +S GDR   V +++ A D       
Sbjct: 283 W--------QWLVVRNDTGQEMLDLVWEQLETQAVMSKGDRHQAVQQSIPAYDKGVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL++ R + KK  +  +P YA
Sbjct: 332 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYLKRNYPKK-LESQVPEYA 386

Query: 301 KKIVEMYN 308
           +KIV  Y 
Sbjct: 387 QKIVNQYK 394


>gi|115457714|ref|NP_001052457.1| Os04g0320100 [Oryza sativa Japonica Group]
 gi|113564028|dbj|BAF14371.1| Os04g0320100 [Oryza sativa Japonica Group]
          Length = 327

 Score =  325 bits (833), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/168 (92%), Positives = 161/168 (95%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           MLK  MV+AVVCVQSDPDDRL+P PVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 154 MLKANMVDAVVCVQSDPDDRLAPMPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 213

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE
Sbjct: 214 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 273

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
           FMQDYKVHLKHLDGHIEEVPYFCLPA DLVDVIAPSCYSCFDYTN LA
Sbjct: 274 FMQDYKVHLKHLDGHIEEVPYFCLPAKDLVDVIAPSCYSCFDYTNGLA 321


>gi|443311444|ref|ZP_21041072.1| coenzyme F420-reducing hydrogenase, beta subunit [Synechocystis sp.
           PCC 7509]
 gi|442778482|gb|ELR88747.1| coenzyme F420-reducing hydrogenase, beta subunit [Synechocystis sp.
           PCC 7509]
          Length = 401

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/307 (53%), Positives = 203/307 (66%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++ARTPE++L A+  KPTLSPNL+ L  +E +G+K
Sbjct: 107 MLTKGLVEGVVCVQNTKEDRFQPMPIIARTPEDILKARVNKPTLSPNLSVLEQIEQSGMK 166

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL   S  P TV+ YE
Sbjct: 167 RLLVIGVGCQIQALRAVEKQLGLEKLYVLGTPCVDNVTRAGLQKFLDTTSKSPGTVVSYE 226

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQDY+VH KH DG  E VP+F L  N L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 227 FMQDYRVHFKHEDGSTETVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 286

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN  G+EML LV++ L++   +SSGDR   V +++ A D       
Sbjct: 287 W--------QWIVVRNNTGQEMLDLVQDQLQVQEVMSSGDRTAAVQQSIPAYDKGVT--- 335

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P +A
Sbjct: 336 ----LPMWAAKMMGVVIEKIGPKGLEYARFSIDSHFTRNYLYVQRQHPEK-LNAHVPEFA 390

Query: 301 KKIVEMY 307
           KKIV  Y
Sbjct: 391 KKIVAQY 397


>gi|170079232|ref|YP_001735870.1| putative coenzyme F420 hydrogenase/dehydrogenase subunit beta
           [Synechococcus sp. PCC 7002]
 gi|169886901|gb|ACB00615.1| putative coenzyme F420 hydrogenase/dehydrogenase, beta subunit
           [Synechococcus sp. PCC 7002]
          Length = 399

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/308 (53%), Positives = 198/308 (64%), Gaps = 16/308 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+  +VE VVCVQS PDDR  P P++A TPEE+LAA+  KPTLSPNL  L  +E  G K
Sbjct: 104 MLEEKLVEGVVCVQSSPDDRFQPMPIIATTPEEILAARVNKPTLSPNLTILEQIEQGGFK 163

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+V+  L LEKLYVLG  CVDN TR GL KFL   S  PETV++YE
Sbjct: 164 KLLVIGVGCQIQALRAVQDKLGLEKLYVLGLPCVDNVTRAGLQKFLDTTSRSPETVVYYE 223

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+KVH KH DG  E VP+F L  N L DV APSC SCFDYTN LADLVVGYMG P  
Sbjct: 224 FMQDFKVHFKHEDGSTETVPFFGLKTNQLKDVFAPSCMSCFDYTNGLADLVVGYMGAPFG 283

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VRNE G+EM  LV + +E  P  S GDRR  V  ++ A D       
Sbjct: 284 W--------QWMVVRNETGQEMFDLVADQIETQPVSSKGDRRAAVQNSIPAYDKGVT--- 332

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+A++S+D H  RNYL+  R +  K  + H+P +A
Sbjct: 333 ----LPMWAAKLMGIVIEKIGPKGLEYAKFSIDSHFTRNYLYTRRNYPGK-LEAHVPEFA 387

Query: 301 KKIVEMYN 308
           KKIV  Y 
Sbjct: 388 KKIVAQYE 395


>gi|434386930|ref|YP_007097541.1| coenzyme F420-reducing hydrogenase, beta subunit [Chamaesiphon
           minutus PCC 6605]
 gi|428017920|gb|AFY94014.1| coenzyme F420-reducing hydrogenase, beta subunit [Chamaesiphon
           minutus PCC 6605]
          Length = 397

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 161/307 (52%), Positives = 207/307 (67%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+ P+DR  P P++ART  E+LAAK  KPTLSPNL+ L  +  +G+K
Sbjct: 103 MLEQGLVEGVVCVQNTPEDRFQPMPIIARTRAEILAAKVNKPTLSPNLSILEQIAESGLK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+VE  L LE+LYVLGT C DN TR GL KFL+  S  PETV++YE
Sbjct: 163 KLLVIGVGCQIQALRAVEKELGLEQLYVLGTPCTDNVTRAGLQKFLETTSRSPETVVYYE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ VH KH DG  E VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 223 FMQDFNVHFKHEDGSTELVPFFGLNTKELKDVFAPSCLSCFDYVNSLADLVVGYMGAPFG 282

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG++ML LV N +E    +S GDR   V +++ A D A     
Sbjct: 283 W--------QWIVVRNDRGQQMLDLVNNAIETQAVMSKGDRTAAVQQSIPAYDKAVT--- 331

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +V  ++   I+ +GPKGLE+AR+S+D H  RNYL   R + +K  ++H+P +A
Sbjct: 332 ----LPMWVAKIMGVVIDKIGPKGLEYARFSIDSHFTRNYLFTKRNYPEK-LEQHVPEFA 386

Query: 301 KKIVEMY 307
           KKIV+ Y
Sbjct: 387 KKIVDRY 393


>gi|334119192|ref|ZP_08493279.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Microcoleus vaginatus FGP-2]
 gi|333458663|gb|EGK87280.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Microcoleus vaginatus FGP-2]
          Length = 400

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 162/307 (52%), Positives = 205/307 (66%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+  +DR  P P++AR  EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLEKGIVEGVVCVQNTKEDRFQPMPIIARNREEILAAKVNKPTLSPNLSVLEQIEQSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R GL KFL   S  PETV+ YE
Sbjct: 165 RLLVIGVGCQIQALRTVEKKLGLEKLYVLGTPCVDNVSRAGLQKFLDTTSRSPETVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ VH KH DG  E+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFNVHFKHEDGSEEQVPFFGLNTKELKDVFAPSCLSCFDYVNSLADLVVGYMGAPFG 284

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV + L   P +S G+R+  V +++ A +       
Sbjct: 285 W--------QWIVVRNDTGQEMLDLVTDQLNTQPVMSKGNRKEAVQQSIPAYEKGVT--- 333

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+  FI  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P YA
Sbjct: 334 ----LPMWAAKLMGVFIERIGPKGLEYARFSIDSHFTRNYLYVKRNYPEK-LEAHVPEYA 388

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 389 KRIVGQY 395


>gi|254422838|ref|ZP_05036556.1| Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminal
           domain family protein [Synechococcus sp. PCC 7335]
 gi|196190327|gb|EDX85291.1| Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminal
           domain family protein [Synechococcus sp. PCC 7335]
          Length = 353

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 162/307 (52%), Positives = 202/307 (65%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  DDR  P PV+ARTPEE+LAA+  KPTLSPNL+ L  +E +G+K
Sbjct: 58  MLDRGLVEGVVCVQNTEDDRFQPMPVIARTPEEILAARVNKPTLSPNLSVLDQIERSGMK 117

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+L  GVGCQ+QALR+V+  + LEKLYVLG  CVDN TR GL KFL+  S  PETV+ YE
Sbjct: 118 RVLVIGVGCQIQALRAVQDQIGLEKLYVLGMPCVDNVTRAGLQKFLETTSRSPETVVAYE 177

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E+VP+F L  N L DV APSC SCFDYTN+LAD+VVGYMG P  
Sbjct: 178 FMQDFQVHFKHEDGSEEKVPFFGLKTNKLKDVFAPSCMSCFDYTNSLADIVVGYMGAPFG 237

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRNE G +M  L+  ++E  P  SSGDR   V  ++ A D       
Sbjct: 238 W--------QWIVVRNETGAQMFELLDGIIETQPVESSGDRTQAVQNSIPAYDKGVT--- 286

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+   I  +GPKGLE+AR+S+D H  RNYL+  R   +K A  H+P +A
Sbjct: 287 ----LPMWAAKLMGVVIEKIGPKGLEYARFSIDSHFTRNYLYTRRNHPEKLA-AHVPEFA 341

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 342 KRIVGQY 348


>gi|300869262|ref|ZP_07113854.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Oscillatoria sp. PCC 6506]
 gi|300332718|emb|CBN59052.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Oscillatoria sp. PCC 6506]
          Length = 400

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/307 (53%), Positives = 204/307 (66%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+  +DR  P P++A TPEE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLNRGIVEGVVCVQNTKEDRFQPMPIIATTPEEILAAKVNKPTLSPNLSVLEQIEKSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R+GL KFL+  S   ETV+ YE
Sbjct: 165 RLLVIGVGCQIQALRTVEKKLGLEKLYVLGTPCVDNVSRDGLQKFLETTSRSHETVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ VH KH DG  E+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFNVHFKHEDGTTEKVPFFGLNTKELKDVFAPSCLSCFDYVNSLADLVVGYMGAPFG 284

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV   L   P +S G+R P V +++ A +       
Sbjct: 285 W--------QWIVVRNDTGQEMLDLVMEQLNTQPVMSQGNRMPAVQQSIPAYEKGVT--- 333

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+  FI  +GPKGLE+AR+S+D H  RNYL+V R   +K  + H+P YA
Sbjct: 334 ----LPMWAAKLMGVFIEKIGPKGLEYARFSIDSHFTRNYLYVKRNHPEK-LEAHVPEYA 388

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 389 KRIVGQY 395


>gi|428318671|ref|YP_007116553.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Oscillatoria nigro-viridis PCC 7112]
 gi|428242351|gb|AFZ08137.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Oscillatoria nigro-viridis PCC 7112]
          Length = 400

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 162/307 (52%), Positives = 205/307 (66%), Gaps = 16/307 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML+ G+VE VVCVQ+  +DR  P P++A   EE+LAAK  KPTLSPNL+ L  +E +G+K
Sbjct: 105 MLEKGIVEGVVCVQNTKEDRFQPMPIIATNREEILAAKVNKPTLSPNLSVLEQIEKSGMK 164

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN +R GL KFL   S  PETV+ YE
Sbjct: 165 RLLVIGVGCQIQALRTVEKKLGLEKLYVLGTPCVDNVSRAGLQKFLDTTSRSPETVVSYE 224

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+KVH KH DG  E+VP+F L   +L DV APSC SCFDY N+LADLVVGYMG P  
Sbjct: 225 FMQDFKVHFKHEDGSEEKVPFFGLNTKELKDVFAPSCLSCFDYVNSLADLVVGYMGAPF- 283

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+ G+EML LV + L   P +S G+R+  V +++ A +       
Sbjct: 284 -------GWQWIVVRNDTGQEMLDLVTDQLNTQPVMSKGNRKEAVQQSIPAYEKGVT--- 333

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
                P +   L+  FI  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P YA
Sbjct: 334 ----LPMWAAKLMGVFIERIGPKGLEYARFSIDSHFTRNYLYVKRNYPEK-LEAHVPEYA 388

Query: 301 KKIVEMY 307
           K+IV  Y
Sbjct: 389 KRIVGQY 395


>gi|449016811|dbj|BAM80213.1| similar to coenzyme F420-reducing hydrogenase, beta subunit
           [Cyanidioschyzon merolae strain 10D]
          Length = 508

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/317 (52%), Positives = 207/317 (65%), Gaps = 26/317 (8%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML++G+VE VVCVQS  DDR  P PV+AR   E+LAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 203 MLESGLVEGVVCVQSSKDDRFKPVPVIARNRAEILAARVNKPTLSPNLSVLDAVERSGIK 262

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLLF GVGCQV+ALRSV+  + LEKLYVLGT CVDN TR GL KFL   SS PETV++YE
Sbjct: 263 RLLFIGVGCQVEALRSVQDRIGLEKLYVLGTPCVDNVTRAGLQKFLDTTSSSPETVVYYE 322

Query: 121 FMQDYKVHLKHLDGHI--------EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           FMQD++VH KH D  I        E VP+F L   +L +V APSC SCFDY N LADLVV
Sbjct: 323 FMQDFRVHFKHDDSVIGGPGRKWDEIVPFFALNTQELKEVFAPSCLSCFDYVNGLADLVV 382

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNL--LEITPTISSGDRRPFVMETVK 230
           GYMG P           Q++  RNE G EML L + +  LE  P  + GDRR  V +++ 
Sbjct: 383 GYMGAPF--------GWQWLVARNETGLEMLELARQVCGLEEGPVDACGDRRAAVQQSIT 434

Query: 231 ADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKK 290
           A D A          P+++   +A  I  +GPKGLE+AR+S+D H  RNYL+V R + +K
Sbjct: 435 AYDRALT-------LPRWIAEFLAIIIGKIGPKGLEYARFSIDSHFTRNYLYVRRRYPEK 487

Query: 291 RADKHMPSYAKKIVEMY 307
             D H+P YAK+IV  Y
Sbjct: 488 -LDAHVPEYAKRIVSQY 503


>gi|443315201|ref|ZP_21044705.1| coenzyme F420-reducing hydrogenase, beta subunit [Leptolyngbya sp.
           PCC 6406]
 gi|442785212|gb|ELR95048.1| coenzyme F420-reducing hydrogenase, beta subunit [Leptolyngbya sp.
           PCC 6406]
          Length = 400

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/309 (52%), Positives = 202/309 (65%), Gaps = 17/309 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML  G+VE VVCVQ+   DR  P P++ARTPEE+LAA+  KPTLSPNL+ L  V  +G+K
Sbjct: 104 MLNRGLVEGVVCVQNTDRDRFQPMPIIARTPEEILAARVNKPTLSPNLSVLEQVAQSGMK 163

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RLL  GVGCQ+QALR+VE  L LE+LYVLGT CVDN TR GL KFL   S  PETV+HYE
Sbjct: 164 RLLVIGVGCQIQALRAVESQLGLEQLYVLGTPCVDNVTRAGLQKFLDTTSRSPETVVHYE 223

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L   +L DV APSC SCFDY N LADLVVGYMG P  
Sbjct: 224 FMQDFRVHFKHEDGSTETVPFFGLNTRELKDVFAPSCMSCFDYVNGLADLVVGYMGAPFG 283

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q+I VRN+RG+ ML  V + L+  P  S G+R   V +++ A D       
Sbjct: 284 W--------QWIVVRNDRGQAMLETVMDQLDTQPVASQGNRVDAVQQSIAAYDKGVT--- 332

Query: 241 PSQPAPKFVGNLIAFFIN-LVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
                P +   L+   I+ ++GPKGLE+AR+S+D H  RNYL+  R + +K A  H+P +
Sbjct: 333 ----LPMWAAKLLGIVIDKVLGPKGLEYARFSIDSHFTRNYLYTRRNYPEKLA-AHVPEF 387

Query: 300 AKKIVEMYN 308
           AK+IV  Y 
Sbjct: 388 AKRIVSRYK 396


>gi|37520447|ref|NP_923824.1| hypothetical protein gll0878 [Gloeobacter violaceus PCC 7421]
 gi|35211441|dbj|BAC88819.1| gll0878 [Gloeobacter violaceus PCC 7421]
          Length = 391

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 160/307 (52%), Positives = 207/307 (67%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G+V+AV+CV +D  DR +PRP+LARTPEEVLAA+  KPTLSPNL+ L  +   G+KR
Sbjct: 97  LESGLVDAVLCVGADKIDRFTPRPLLARTPEEVLAARVNKPTLSPNLSVLDEIPKLGIKR 156

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+V+  L LE LYVLGT CVDN TR+GL  FL + S  P TV+HYEF
Sbjct: 157 LLAIGVGCQIQALRTVQDKLGLEALYVLGTPCVDNVTRQGLQTFLDSTSRSPATVVHYEF 216

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H KH DG IE+VP+F L    L +V APSC SCFDY N LADLVVGYMG     
Sbjct: 217 MQDFRIHFKHEDGSIEKVPFFGLDTKALKEVFAPSCLSCFDYVNGLADLVVGYMGA---- 272

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q+I  RNE+G+ +L LV++ LE T  + SG R   V + ++A D A      
Sbjct: 273 ----QFGWQWIVERNEKGRVLLDLVRDELEFTDIVESGKRFAAVQQGIEAYDKAVT---- 324

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P +V  ++   I+ +GP+GLE+AR+S+D H  RNYL+V R +  K  D+H+P YAK
Sbjct: 325 ---LPMWVAKVMGAVIDKIGPRGLEYARFSIDSHFARNYLYVRRRYPGK-FDRHIPRYAK 380

Query: 302 KIVEMYN 308
           KIV  Y 
Sbjct: 381 KIVSRYK 387


>gi|427701554|ref|YP_007044776.1| coenzyme F420-reducing hydrogenase subunit beta [Cyanobium gracile
           PCC 6307]
 gi|427344722|gb|AFY27435.1| coenzyme F420-reducing hydrogenase, beta subunit [Cyanobium gracile
           PCC 6307]
          Length = 406

 Score =  313 bits (802), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 157/307 (51%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G+V+AV+CVQ  PDDR +P PVLARTP+EVLAA+  KPTLSPNL  L  +  +G++R
Sbjct: 112 LESGLVDAVLCVQQSPDDRFTPVPVLARTPQEVLAARVNKPTLSPNLEVLEQLPGSGIER 171

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+V+  L L+KLYVLG  CVDN +R+GL  FL++AS  P+TV+HYEF
Sbjct: 172 LLAIGVGCQIQALRAVQATLPLQKLYVLGLPCVDNVSRQGLQTFLESASRSPDTVVHYEF 231

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L DV APSC SCFDYTNA ADLVVGYMG     
Sbjct: 232 MQDFRIHFRHSDGQEETVPFFGLDTPALKDVFAPSCLSCFDYTNAGADLVVGYMGA---- 287

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
               T   Q++TVRN  G+E+L LV+  L++ P  SSGDRR  V + + A + A      
Sbjct: 288 ----TFGRQWVTVRNPLGQELLDLVEPELDLAPVTSSGDRRQAVQQGIDAYEKALK---- 339

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  L+  F+   GPKGLE+ R+S+D H  RN L + R   +K  D H+P++A+
Sbjct: 340 ---LPMWLAELVGVFVQRFGPKGLEYGRFSIDSHFTRNALWLQRHHPEK-VDAHIPAFAR 395

Query: 302 KIVEMYN 308
           +IV  Y 
Sbjct: 396 RIVARYR 402


>gi|88808927|ref|ZP_01124436.1| hypothetical protein WH7805_04526 [Synechococcus sp. WH 7805]
 gi|88786869|gb|EAR18027.1| hypothetical protein WH7805_04526 [Synechococcus sp. WH 7805]
          Length = 402

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/307 (50%), Positives = 207/307 (67%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G+V+AV+CVQ  PDDR +P PVLARTP EVLAA+  KPTLS NL+ L  +  +G+KR
Sbjct: 108 LESGLVDAVLCVQQSPDDRFTPMPVLARTPAEVLAARVNKPTLSNNLSVLEQLPGSGIKR 167

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQVQALR+V+  L L+ LYVLG  CVDN +REGL  FL++AS+ P+TV+HYEF
Sbjct: 168 LLAIGVGCQVQALRAVQDTLPLDALYVLGLPCVDNVSREGLQTFLESASASPDTVVHYEF 227

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DGH+E VP+F L    L DV APSC SCFDY NA ADLVVGYMG     
Sbjct: 228 MQDFRIHFRHSDGHVETVPFFGLDTPALKDVFAPSCLSCFDYVNAGADLVVGYMGAEFGR 287

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN RG+E+L LV+  L+  P  S GDRR  V + + A D A      
Sbjct: 288 --------QWLVVRNSRGEELLKLVEAELDQAPVSSRGDRRQAVQQGIDAYDKALR---- 335

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  L+ + +  VGPKGLE+ R+S+D H  RN L + R    +  ++H+P++A+
Sbjct: 336 ---LPMWLAELVGWIVQRVGPKGLEYGRFSIDSHFTRNALWLRRH-HPEMVERHLPAFAR 391

Query: 302 KIVEMYN 308
           +IVE Y 
Sbjct: 392 RIVERYR 398


>gi|148239886|ref|YP_001225273.1| coenzyme F420-reducing hydrogenase subunit beta [Synechococcus sp.
           WH 7803]
 gi|147848425|emb|CAK23976.1| Coenzyme F420-reducing hydrogenase, beta subunit [Synechococcus sp.
           WH 7803]
          Length = 402

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 156/307 (50%), Positives = 208/307 (67%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+TG+V+AV+CVQ  PDDR +P PVLARTPEEVLAA+  KPTLS NL+ L  +  +G+KR
Sbjct: 108 LETGLVDAVLCVQQSPDDRFTPMPVLARTPEEVLAARVNKPTLSNNLSVLEQLPGSGIKR 167

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQVQALR+V+  L LE LYVLG  CVDN +REGL  FL++AS+ P+TV+HYEF
Sbjct: 168 LLAIGVGCQVQALRAVQDTLPLEALYVLGLPCVDNVSREGLQTFLESASATPDTVVHYEF 227

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG +E VP+F L    L DV APSC SCFDY NA ADLVVGYMG     
Sbjct: 228 MQDFRIHFRHSDGRVETVPFFGLDTPALKDVFAPSCLSCFDYVNAGADLVVGYMGAEFGR 287

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN RG+++L LV+  L+  P +S GDRR  V + + A D A      
Sbjct: 288 --------QWLVVRNSRGEDLLKLVEAELDQAPVMSRGDRRQAVQQGIDAYDKALR---- 335

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  ++ + +  VGPKGLE+ R+S+D H  RN L + R    +  ++H+P++A+
Sbjct: 336 ---LPMWLAEVVGWIVQRVGPKGLEYGRFSIDSHFTRNALWLRRH-HPEVVERHLPAFAR 391

Query: 302 KIVEMYN 308
           +IVE Y 
Sbjct: 392 RIVERYR 398


>gi|452822609|gb|EME29627.1| coenzyme F420 hydrogenase beta subunit [Galdieria sulphuraria]
          Length = 485

 Score =  311 bits (796), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/315 (50%), Positives = 208/315 (66%), Gaps = 24/315 (7%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+ +VCV++D  DR  P+PVLA TPEE+ A++  KPTLSPNL+ L  VEA+G  
Sbjct: 182 LLETGKVQGIVCVRNDEQDRFQPKPVLATTPEEIYASRVNKPTLSPNLSVLDTVEASGFT 241

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   GVGCQV+ALRSV+  L LEKLYVLGT CVDN TR+GLDKFL+  S+ P+TV+HYE
Sbjct: 242 RIGVIGVGCQVEALRSVQSKLGLEKLYVLGTPCVDNVTRKGLDKFLRTTSTSPDTVVHYE 301

Query: 121 FMQDYKVHLKHLDGHI--------EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           FMQD++VH KH D  +        E VP+F L  N+L D+ APSC SCFDY N+LADLVV
Sbjct: 302 FMQDFRVHFKHDDKVVGGPGKQWTETVPFFGLKTNELKDIFAPSCLSCFDYVNSLADLVV 361

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKAD 232
           GYMG P           Q+I VRNE G EML LV + +E  P  SSG+R   V  ++ A 
Sbjct: 362 GYMGAPF--------GWQWIVVRNEIGMEMLDLVSSQIETMPLSSSGNRLQAVQNSIPAY 413

Query: 233 DNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA 292
           D            P ++  L+   I+ +GPKGLE+AR+S+D H  RNYL++ R +     
Sbjct: 414 DKG-------MTLPMWIAQLLGVVIDKLGPKGLEYARFSIDSHFTRNYLYMKRNF-PNIL 465

Query: 293 DKHMPSYAKKIVEMY 307
            +H+P YA++I+E Y
Sbjct: 466 QRHVPEYARRIIEQY 480


>gi|116073059|ref|ZP_01470321.1| coenzyme F420 hydrogenase [Synechococcus sp. RS9916]
 gi|116068364|gb|EAU74116.1| coenzyme F420 hydrogenase [Synechococcus sp. RS9916]
          Length = 381

 Score =  310 bits (793), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 157/306 (51%), Positives = 203/306 (66%), Gaps = 16/306 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           LKTG+V+AV+CVQ  PDDR +P PVLARTPEEV+AA+  KPTLS NL+ L  +  +G+KR
Sbjct: 87  LKTGLVDAVLCVQQSPDDRFTPMPVLARTPEEVMAARVNKPTLSNNLSVLEQLPGSGIKR 146

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALRSV+  L L++LYVLG  CVDN +REGL+ FL +AS  P+TV+HYEF
Sbjct: 147 LLAIGVGCQIQALRSVQDTLPLDELYVLGLPCVDNVSREGLNTFLNSASDSPDTVVHYEF 206

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L DV APSC SCFDYTNA ADLVVGYMG     
Sbjct: 207 MQDFRIHFRHRDGREETVPFFGLDTPKLKDVFAPSCLSCFDYTNAGADLVVGYMGAEF-- 264

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN RG ++L LV+  L+     S GDRR  V + + A D A      
Sbjct: 265 ------GRQWLVVRNARGAQLLKLVEADLDTASVTSRGDRRAAVQQGIDAYDKAL----- 313

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P +V   + + +  +GPKGLE+ R+S+D H  RN L V R    +   +H+P++A+
Sbjct: 314 --KLPMWVAEAVGWVVQRIGPKGLEYGRFSIDSHFTRNALWVRRNHSDQYT-RHLPAFAR 370

Query: 302 KIVEMY 307
           KIVE Y
Sbjct: 371 KIVERY 376


>gi|87303404|ref|ZP_01086192.1| hypothetical protein WH5701_10265 [Synechococcus sp. WH 5701]
 gi|87282052|gb|EAQ74014.1| hypothetical protein WH5701_10265 [Synechococcus sp. WH 5701]
          Length = 394

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 152/307 (49%), Positives = 207/307 (67%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G+V+AV+CVQ  PDDR +P PVLARTPEEVLAA+  KPTLSPNL  L  +  +G++R
Sbjct: 101 LESGLVDAVLCVQQSPDDRFTPVPVLARTPEEVLAARVNKPTLSPNLEVLQQLPGSGIRR 160

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+V+  L L++LYVLG  CVDN +R GL  FL++AS   +TV+HYEF
Sbjct: 161 LLAIGVGCQIQALRAVQDTLPLDELYVLGMPCVDNVSRSGLQTFLESASRSADTVVHYEF 220

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L   +L  V APSC SCFDYTNA ADLVVGYMG     
Sbjct: 221 MQDFRIHFRHSDGSEETVPFFGLDTPNLKSVFAPSCLSCFDYTNAGADLVVGYMGA---- 276

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
               +   Q++ VRN +G+++L LV+  L+  P  S G+RR  V + ++A D A      
Sbjct: 277 ----SFGRQWLVVRNPKGQQLLDLVEAELDTAPVTSQGNRRAAVQQGIEAYDKAVK---- 328

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  ++ FF+N  GPKGLE+ R+S+D H  RN + V R     +AD+H+P++AK
Sbjct: 329 ---LPLWLAEVVGFFVNRFGPKGLEYGRFSIDSHFTRNAIWVRRH-HPDQADRHIPAFAK 384

Query: 302 KIVEMYN 308
            I+  Y 
Sbjct: 385 AIISRYR 391


>gi|318040250|ref|ZP_07972206.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Synechococcus sp. CB0101]
          Length = 404

 Score =  303 bits (776), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 152/307 (49%), Positives = 206/307 (67%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+TG+V+AV+CV    DDR +P P LARTPEEVL+A+  KPTLSPNL  L  +  +G+KR
Sbjct: 111 LETGLVDAVLCVGQSEDDRFTPVPRLARTPEEVLSARVNKPTLSPNLEVLEQLPGSGIKR 170

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+V+  L L++L+VLG  CVDN +R+GL  FL++  S P+TV+HYEF
Sbjct: 171 LLAIGVGCQIQALRAVQPTLPLDELFVLGLPCVDNVSRQGLQTFLESTVSSPDTVVHYEF 230

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L DV APSC SCFDYTNA ADLVVGYMG     
Sbjct: 231 MQDFRIHFRHSDGREETVPFFGLDTPKLKDVFAPSCLSCFDYTNAGADLVVGYMGA---- 286

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
               T   Q++TVRN +G+++L LV+  L++ P  SSG R+  V + ++A D A      
Sbjct: 287 ----TFGRQWLTVRNPKGQQLLDLVEAELDVAPVSSSGQRQAAVQQGIEAYDKAVK---- 338

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P +V NLI FF+   GPKGLE+ R+S+D H  RN + + R    K  + H+P++A+
Sbjct: 339 ---LPIWVANLIGFFVERFGPKGLEYGRFSIDSHFTRNAVWLRRHHPDK-VEAHIPAFAR 394

Query: 302 KIVEMYN 308
           +I+  Y 
Sbjct: 395 RIISRYR 401


>gi|87124766|ref|ZP_01080614.1| hypothetical protein RS9917_01052 [Synechococcus sp. RS9917]
 gi|86167645|gb|EAQ68904.1| hypothetical protein RS9917_01052 [Synechococcus sp. RS9917]
          Length = 386

 Score =  302 bits (774), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 151/307 (49%), Positives = 205/307 (66%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+V+AV+CVQ  P+DR +P PVLARTPEEV+AA+  KPTLS NL+ L  +  +G++ 
Sbjct: 92  LERGLVDAVLCVQQSPEDRFTPVPVLARTPEEVMAARVNKPTLSNNLSVLEQLPGSGIRN 151

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+VE  L L+ LYVLG  CVDN +R+GL  FL++AS  PETV+HYEF
Sbjct: 152 LLAIGVGCQIQALRAVEDTLPLDALYVLGLPCVDNVSRQGLQTFLESASDSPETVVHYEF 211

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L DV APSC SCFDY NA ADLVVGYMG  +Y 
Sbjct: 212 MQDFRIHFRHRDGRQETVPFFGLDTPRLKDVFAPSCLSCFDYVNAGADLVVGYMGA-EYG 270

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN+RG  +L L++  L++ P  S GDRR  V + + A D A      
Sbjct: 271 -------RQWLVVRNQRGAALLDLIEADLDLAPVTSRGDRRAAVQQGIDAYDKAVR---- 319

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  L+ + +  +GPKGLE+ R+S+D H  RN L + R    +  D+H+P++A+
Sbjct: 320 ---LPMWLAELVGWVVQRIGPKGLEYGRFSIDSHFTRNALWLRRH-HPEVVDRHLPAFAR 375

Query: 302 KIVEMYN 308
           +IVE Y 
Sbjct: 376 RIVERYR 382


>gi|254432879|ref|ZP_05046582.1| coenzyme F420 hydrogenase [Cyanobium sp. PCC 7001]
 gi|197627332|gb|EDY39891.1| coenzyme F420 hydrogenase [Cyanobium sp. PCC 7001]
          Length = 381

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/307 (50%), Positives = 202/307 (65%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+TG+V+AV+CV     DR +P P LARTPEEVL+A+  KPTLSPNL  L  +  +G++R
Sbjct: 87  LETGLVDAVLCVGQSEHDRFTPVPRLARTPEEVLSARVNKPTLSPNLEVLEQLPGSGIRR 146

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+V+  L L+ LYVLG  CVDN +R GL  FL++  S PETV+HYEF
Sbjct: 147 LLAIGVGCQIQALRAVQPTLPLDALYVLGLPCVDNVSRAGLQTFLESTVSSPETVVHYEF 206

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L DV APSC SCFDYTNA ADLVVGYMG     
Sbjct: 207 MQDFRIHFRHSDGRTETVPFFGLDTPKLKDVFAPSCLSCFDYTNAGADLVVGYMGAEFGR 266

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q+ITVRN  G+++L LV+  L++ P  S GDRR  V + ++A D A      
Sbjct: 267 --------QWITVRNPLGQQLLDLVEPELDVAPVTSRGDRRAAVQQGIEAYDKAVK---- 314

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P+++  LI  F+   GPKGLE+ R+S+D H  RN L V R   +K A+ H+P++A+
Sbjct: 315 ---LPRWLAELIGVFVQRFGPKGLEYGRFSIDSHFTRNALWVRRHHPEK-AEAHIPAFAR 370

Query: 302 KIVEMYN 308
           +IV  Y 
Sbjct: 371 RIVSRYR 377


>gi|194477230|ref|YP_002049409.1| hypothetical protein PCC_0785 [Paulinella chromatophora]
 gi|171192237|gb|ACB43199.1| hypothetical protein PCC_0785 [Paulinella chromatophora]
          Length = 404

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 149/306 (48%), Positives = 208/306 (67%), Gaps = 16/306 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           LKTG+V+AV+CVQ    DR +P P+LARTPEEVLAA+  K TLSPNL  L  +  +G+K+
Sbjct: 111 LKTGLVDAVLCVQQGEQDRFTPVPILARTPEEVLAARVNKATLSPNLEALEQLSGSGIKK 170

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQVQALR+V+  L L++LYVLG  CVDN +R GL  FL++ S  P TV+HYEF
Sbjct: 171 LLAIGVGCQVQALRAVQSTLPLDELYVLGMPCVDNVSRTGLQTFLESTSKSPNTVVHYEF 230

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+ +H  H +G  E + +F L    + D+ APSC SCFDY NA ADLV+GYMG  K+ 
Sbjct: 231 MQDFYIHFHHSNGSKETISFFGLDTPKVKDIFAPSCLSCFDYVNAGADLVIGYMGA-KFG 289

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++TVRN RG+++LSL+++ L+I P  SSGDR   V + + A + A      
Sbjct: 290 -------YQWLTVRNTRGEKLLSLIESQLDILPVDSSGDRHSAVQQGIDAYNKA------ 336

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++ +L+A+++  +GP+GLE++R+S+D H  RN L + R   +K A++H+P++AK
Sbjct: 337 -LKLPIWIASLVAWWVKYIGPQGLEYSRFSIDSHFTRNALWLWRHHSEK-AEQHIPAFAK 394

Query: 302 KIVEMY 307
           KIV  Y
Sbjct: 395 KIVSRY 400


>gi|148241873|ref|YP_001227030.1| coenzyme F420-reducing hydrogenase subunit beta [Synechococcus sp.
           RCC307]
 gi|147850183|emb|CAK27677.1| Coenzyme F420-reducing hydrogenase, beta subunit [Synechococcus sp.
           RCC307]
          Length = 397

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 153/307 (49%), Positives = 204/307 (66%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+AV+CVQ  P+DR +P PVLARTP+EVLAA+  KPTLS NL+ L  +  +G+KR
Sbjct: 103 LEQNLVDAVLCVQQSPEDRFTPMPVLARTPQEVLAARVNKPTLSNNLSVLEQLPGSGIKR 162

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ QALR+V+  L LE+LYVLG  CVDN +REGL  FL++ S  PETV+HYEF
Sbjct: 163 LLAIGVGCQTQALRAVQDSLGLEELYVLGMPCVDNVSREGLQTFLESTSRSPETVVHYEF 222

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L DV APSC SCFDY NA ADLVVGYMG P   
Sbjct: 223 MQDFRIHFRHSDGSTETVPFFGLDTPKLKDVFAPSCLSCFDYVNACADLVVGYMGAPF-- 280

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
                   Q++ VRN+RG+++L LV+  L+  P +SSG R   V + + A D A      
Sbjct: 281 ------QWQWLVVRNQRGQKLLDLVEAELKTQPVMSSGQRAQAVQQGIDAYDKALR---- 330

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P+++  ++   +  VGPKGLE+AR+S+D H  RN   + R   +K A +H+P++A+
Sbjct: 331 ---LPRWLAEVVGVVVQRVGPKGLEYARFSIDSHFTRNATWLRRHHPEKLA-QHLPAFAQ 386

Query: 302 KIVEMYN 308
           KIV  Y 
Sbjct: 387 KIVSRYR 393


>gi|317970406|ref|ZP_07971796.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Synechococcus sp. CB0205]
          Length = 405

 Score =  295 bits (754), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 147/307 (47%), Positives = 202/307 (65%), Gaps = 16/307 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G+V+AV+CV    DDR +P P LARTPEEVL+A+  KPTLSPNL  L  +  +G+++
Sbjct: 111 LESGLVDAVLCVGQSEDDRFTPVPRLARTPEEVLSARVNKPTLSPNLEVLEQLPGSGIRK 170

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           LL  GVGCQ+QALR+VE  L L++LYVLG  C DN +REGL  FL+   S PETV+HYEF
Sbjct: 171 LLAIGVGCQIQALRAVESTLPLDQLYVLGLPCTDNVSREGLQTFLETTVSSPETVVHYEF 230

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
           MQD+++H +H DG  E VP+F L    L +V APSC SCFDYTNA ADLVVGYMG     
Sbjct: 231 MQDFRIHFRHSDGREETVPFFGLDTPKLKNVFAPSCLSCFDYTNAGADLVVGYMGA---- 286

Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGP 241
               T   Q++TVRN RG+++L LV+  L++ P  S G R+  V + ++A D A      
Sbjct: 287 ----TFGRQWLTVRNPRGQQLLDLVEAELDVAPVTSRGQRQAAVQQGIEAYDKALK---- 338

Query: 242 SQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAK 301
               P ++  +I  F+   GP+GLE+ R+S+D H  RN L + R   +K  + H+P++A+
Sbjct: 339 ---LPIWLAKIIGCFVGRFGPQGLEYGRFSIDSHFTRNALWLRRNHPEK-VEAHIPAFAQ 394

Query: 302 KIVEMYN 308
           +I+  Y 
Sbjct: 395 RIISRYK 401


>gi|423065981|ref|ZP_17054771.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Arthrospira platensis C1]
 gi|406712480|gb|EKD07665.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Arthrospira platensis C1]
          Length = 330

 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 136/229 (59%), Positives = 164/229 (71%), Gaps = 8/229 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ML   +VE VVCVQ+  +DR  P P+LARTPEEVLAA+  KPTLSPNL+ L  VE +G+K
Sbjct: 106 MLNQSIVEGVVCVQNTKEDRFGPMPILARTPEEVLAARVNKPTLSPNLSVLEEVERSGMK 165

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           +LL  GVGCQ+QALR+VE  + LEKLYVLGT CVDN TR GL KFL+  S  PETV+HYE
Sbjct: 166 KLLVIGVGCQIQALRAVEKQMGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 225

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD++VH KH DG  E VP+F L  N L D+ APSC SCFDY N+LADLVVGYMG P  
Sbjct: 226 FMQDFRVHFKHEDGSTETVPFFGLKTNQLKDIFAPSCLSCFDYVNSLADLVVGYMGAPFG 285

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETV 229
                    Q+I VRN+RG+EML L+++ L+  P  S GDRR  V ++ 
Sbjct: 286 W--------QWIVVRNDRGQEMLDLIQDQLDTQPVSSQGDRRAAVQQST 326


>gi|223996811|ref|XP_002288079.1| hypothetical protein THAPSDRAFT_14482 [Thalassiosira pseudonana
           CCMP1335]
 gi|220977195|gb|EED95522.1| hypothetical protein THAPSDRAFT_14482 [Thalassiosira pseudonana
           CCMP1335]
          Length = 419

 Score =  278 bits (712), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/327 (48%), Positives = 206/327 (62%), Gaps = 26/327 (7%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLS-PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAG 58
           ML+ GMV+AVVC+ S  DD  S P P+LART EEV+  +GVKP L+P+L  L  +E +  
Sbjct: 99  MLEAGMVDAVVCIASSGDDGWSNPEPILARTVEEVIRGRGVKPALAPSLRVLEELERSTD 158

Query: 59  VKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNG-TREGLDKFLKAAS---SEPE 114
           VKRLLFCGVGC VQA R++EH L LE++YVLGTNC DN  T E   +FL+      S  +
Sbjct: 159 VKRLLFCGVGCAVQAFRAIEHELPLEEVYVLGTNCADNSPTPEAAREFLRRIVPDVSREK 218

Query: 115 TVLHYEFMQDYKVHLKHLDG-----HIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
           T+L YEFMQD++VH+K+ +G       E +PYF LP +     I+ SC +CFDYTNALAD
Sbjct: 219 TILGYEFMQDFRVHVKY-EGINKILSYERLPYFSLPGDVAEFAISDSCLACFDYTNALAD 277

Query: 170 LVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI------TPTISSGDRRP 223
           +VVGYM  P  +  SM Q  Q ITVRN RG+ M   V++ LE       +    SG    
Sbjct: 278 VVVGYMAAPLDSN-SMEQSYQTITVRNSRGELM---VQSALEAGRLTLGSVATGSGSHES 333

Query: 224 FVMETVKADDNAKM---GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNY 280
           FV  TV AD+  +    G   ++  P+FVGN++A  +  VGPKG+ FARYSLDYH +RNY
Sbjct: 334 FVSATVSADNVVQAMVGGELKTEGMPRFVGNIVASVMRAVGPKGVNFARYSLDYHLLRNY 393

Query: 281 LHVNRAWGKKRADKHMPSYAKKIVEMY 307
           LHV   WG+      +P YA  IV+ Y
Sbjct: 394 LHVIDEWGEG-GKSMVPEYATTIVKKY 419


>gi|147799602|emb|CAN75142.1| hypothetical protein VITISV_038426 [Vitis vinifera]
          Length = 366

 Score =  275 bits (703), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 147/250 (58%), Positives = 164/250 (65%), Gaps = 50/250 (20%)

Query: 55  EAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           +AAGVKRLLFCGVGCQVQALRSVE HLNL+KLYVLGTNCVDNGTREGLDKFL AASSEPE
Sbjct: 94  KAAGVKRLLFCGVGCQVQALRSVEQHLNLDKLYVLGTNCVDNGTREGLDKFLNAASSEPE 153

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
           TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAN+LVDVIAPSCYSCFDYTNALA+     
Sbjct: 154 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANELVDVIAPSCYSCFDYTNALAE----- 208

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDN 234
               KY  + + +   +                    IT  +  G      +   K D  
Sbjct: 209 ----KYCNVLLLREVTWYAY-----------------ITSGLGGGIHGCAKIPWSKHDTT 247

Query: 235 AKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKK---- 290
           + +    SQ                +GPKGLEFARYSLDYHTIRNY++VNR WGK+    
Sbjct: 248 STI--CDSQ----------------IGPKGLEFARYSLDYHTIRNYIYVNRMWGKQSGVC 289

Query: 291 --RADKHMPS 298
             R   H P+
Sbjct: 290 KTRVQGHSPT 299


>gi|219113003|ref|XP_002186085.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582935|gb|ACI65555.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 536

 Score =  266 bits (681), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 141/316 (44%), Positives = 198/316 (62%), Gaps = 11/316 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           ML+T  V+AV CV S+ +   +P P+LA+T +EVL  +GVKP+L+P+LN L  V+    +
Sbjct: 205 MLETRQVDAVACVASNEETWSNPNPILAQTTDEVLKGRGVKPSLAPSLNILDEVKNDPSI 264

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFL--KAASSEPETVL 117
           +RLLFCGVGC VQALRS+E+ L +E +++LGTNCVDN    G       K A    ++V 
Sbjct: 265 RRLLFCGVGCSVQALRSIENELGIE-IFILGTNCVDNSPSPGAAAAFIEKGAKVFSDSVR 323

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
            YEFMQD++VH+K  + ++  +PYFCLP       IA SC SCFDYTNALAD+VVGYM  
Sbjct: 324 GYEFMQDFRVHVKTEETYLT-IPYFCLPGTIAESSIAKSCRSCFDYTNALADVVVGYMAA 382

Query: 178 PKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITPTI-SSGDRRPFVMETVKADDN 234
           P      M +  Q +TVRNERG +M+  ++ +  LE+   +  SGD +   + T K+D  
Sbjct: 383 PLDGKSRMDESWQTVTVRNERGNQMVETAITQGRLEVGDIVRGSGDHQQLAIATTKSDAL 442

Query: 235 AKM---GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKR 291
            +    G+      P ++GN++A  +  V  KG+ FARYS+DYH +RNY HV   WG+ R
Sbjct: 443 VQAMVGGKVQENGMPLWLGNIMATVLRKVSAKGIAFARYSIDYHIVRNYFHVLNEWGEHR 502

Query: 292 ADKHMPSYAKKIVEMY 307
           A    P +A +IV+ Y
Sbjct: 503 ARSSTPQFALEIVDEY 518


>gi|397613578|gb|EJK62303.1| hypothetical protein THAOC_17090 [Thalassiosira oceanica]
          Length = 472

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 151/327 (46%), Positives = 201/327 (61%), Gaps = 18/327 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLS-PRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAG 58
           ML++  V+AVVC+ +  D   S P P+LART ++VL  +GVKP L+P+L  L  L     
Sbjct: 137 MLESKKVDAVVCIATGSDGGWSNPEPILARTVDDVLRGRGVKPALAPSLRILDELKSDES 196

Query: 59  VKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNG-TREGLDKFLKAA--SSEPET 115
           +K+LL+CGVGC VQA R++E  L L+K+YVLGT C DN  T +    FLK    S     
Sbjct: 197 IKKLLYCGVGCSVQAFRAIEDELGLDKVYVLGTACADNSPTPKAARDFLKKGIPSIGDSN 256

Query: 116 VLHYEFMQDYKVHLKHLDG---HIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           VL YEFMQD++VH+K  D      +++PYF L  +     IA SC +CFDYTNALAD+VV
Sbjct: 257 VLAYEFMQDFRVHVKVGDEKSPSYKKLPYFSLEPSVAEFAIADSCLACFDYTNALADVVV 316

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITPTI-SSGDRRPFVMETV 229
           GYMG P      M ++ Q ITVRN RG+EM+  ++    LE+  T    G    F M TV
Sbjct: 317 GYMGAPLVD--DMDRNMQTITVRNNRGEEMIRCAIDGERLELGGTARGEGTHEKFAMSTV 374

Query: 230 KADDNA--KMGRG--PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNR 285
            A+DN   KM  G    +  P FVGN+IA     +GPKG+ FARYS+DYH +RNYLH  R
Sbjct: 375 -ANDNLVNKMTGGDVKEKGMPPFVGNIIASIATKLGPKGVAFARYSIDYHILRNYLHCLR 433

Query: 286 AWGKKRADKHMPSYAKKIVEMYNQNGQ 312
            +G+ RAD  +P Y + I++ Y ++ Q
Sbjct: 434 EFGRDRADTMIPEYTRVIIKEYEESDQ 460


>gi|193214920|ref|YP_001996119.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088397|gb|ACF13672.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 418

 Score =  237 bits (604), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/315 (41%), Positives = 188/315 (59%), Gaps = 14/315 (4%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++G VE VV VQ+  DD   P+PVLA +  +V  AKG KP L+P L +L       +KR
Sbjct: 105 LESGFVEGVVAVQNSQDDIFVPKPVLATSTADVFKAKGNKPALAPALLSLGEAYEKKLKR 164

Query: 62  LLFCGVGCQVQALRSV---EHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
           LL  G  C V  LR       +L   ++YVLG  C DN   E L   L+  SS  +T+ H
Sbjct: 165 LLVVGAPCHVHILRDFVKRSPYLKDAEIYVLGIPCTDNVKPEKLRWILERISSSHQTLCH 224

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPAN-DLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
           YEFMQD++VHLKH +G IE+VPYF LP     + V APSC SCFDY N+L+DL VGY+G 
Sbjct: 225 YEFMQDFQVHLKHDNGRIEKVPYFSLPQELSQIGVFAPSCMSCFDYVNSLSDLTVGYLGA 284

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFV-METVKADDNAK 236
           P        +  Q++ +R E+G+E+L  V++ L+  P  +SGD R  V M   +  +  K
Sbjct: 285 P----FMPNEKRQWVLLRTEKGEELLKFVEDELDTYPEETSGDAREAVKMNVERTIEQLK 340

Query: 237 MG-RGPSQPA---PKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA 292
           +G + P++     P +VG LI + ++  GPKGLEFARY++D+H +RNY +V   + +K  
Sbjct: 341 LGNKAPAKTGRRIPIWVGKLITYMMSKKGPKGLEFARYTIDFHILRNYYYVKLFYPEK-F 399

Query: 293 DKHMPSYAKKIVEMY 307
           +  +P +  K++E Y
Sbjct: 400 ETIVPKHVYKVLEEY 414


>gi|163848106|ref|YP_001636150.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526003|ref|YP_002570474.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|10198145|gb|AAG15211.1|AF288460_4 FrhB [Chloroflexus aurantiacus]
 gi|163669395|gb|ABY35761.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222449882|gb|ACM54148.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chloroflexus sp. Y-400-fl]
          Length = 429

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/310 (40%), Positives = 180/310 (58%), Gaps = 14/310 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G+VE V+   + P  R +P P+LARTP+EV A +G KP L+P L+ L  V  +G++
Sbjct: 114 LLEHGLVEGVITTGAVPGTRYAPLPILARTPDEVRATRGNKPCLAPTLDVLTQVRQSGLR 173

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+ + G GCQV ALR++E  L LE+LYV+G  C DN T   L +FL+  S  PETV+H+E
Sbjct: 174 RIAYIGTGCQVHALRAIEDQLGLERLYVIGIPCTDNTTYPDLQRFLQVVSRSPETVIHHE 233

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL---VDVIAPSCYSCFDYTNALADLVVGYMGV 177
           FMQD+++ LKH DG +E+V +  L  + L   + V  P+C SCFDY N L+DL +GYMG 
Sbjct: 234 FMQDFRIWLKHEDGSVEKVNFVDLDVDRLGGQLGVFPPACLSCFDYQNGLSDLTIGYMGA 293

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKM 237
           P    +   +  Q+  +R ERG E+  L+++ +E    IS GDR      T       +M
Sbjct: 294 P----LPPDERWQWTLIRTERGAELYDLLRSHVEEREPISGGDR------TRGMPAYIQM 343

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMP 297
            R P +  P  +  L+AF     GPKGLEFAR  ++   +RN   V    G+    + +P
Sbjct: 344 LRQPRKRPPWPIRQLVAFIQRRSGPKGLEFARSVIEMKLLRNLQFVRERHGRL-ERRIVP 402

Query: 298 SYAKKIVEMY 307
            Y  + +  Y
Sbjct: 403 GYVYRALARY 412


>gi|381160641|ref|ZP_09869873.1| coenzyme F420-reducing hydrogenase, beta subunit [Thiorhodovibrio
           sp. 970]
 gi|380878705|gb|EIC20797.1| coenzyme F420-reducing hydrogenase, beta subunit [Thiorhodovibrio
           sp. 970]
          Length = 453

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 129/308 (41%), Positives = 173/308 (56%), Gaps = 27/308 (8%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG VE V+   + P  R +PRPVLARTP+ V A+ G KP LSPNL  L  V AAG+K
Sbjct: 142 LLETGQVEGVITAAAAPGTRFAPRPVLARTPDAVRASAGNKPCLSPNLALLDEVRAAGIK 201

Query: 61  RLLFCGVGCQVQALRSVE----HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           RL F G GCQVQ LR+ E      + LE L V+G  C DN T   L  FL   S  PET+
Sbjct: 202 RLAFIGTGCQVQILRAAEPQLREQMGLEHLDVIGIPCSDNVTYPDLQFFLTQVSRSPETI 261

Query: 117 LHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
           +HYEFMQDY++ ++H DG IE V +   P + L  V   +C SCFDY N+LAD+ +GYMG
Sbjct: 262 VHYEFMQDYRLWMRHDDGDIERVNFIDFPMDKLDGVFPSACLSCFDYANSLADITIGYMG 321

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAK 236
                        Q++ VR ERG+ ML L+K  LE     S+GDR   +   ++      
Sbjct: 322 A--------RLGWQWVLVRTERGQAMLDLIKPQLEFRELDSAGDRNRGMPRYIRM----- 368

Query: 237 MGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHM 296
           +   P +P PK +  LIAF     GP+GLEFAR  ++   +RN  ++           H 
Sbjct: 369 LAEPPGKP-PKPIRRLIAFLQRRRGPRGLEFARAVIEMKLLRNLQYLR---------SHF 418

Query: 297 PSYAKKIV 304
           P + +++V
Sbjct: 419 PRFEQRVV 426


>gi|309790871|ref|ZP_07685415.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Oscillochloris trichoides DG-6]
 gi|308227158|gb|EFO80842.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Oscillochloris trichoides DG6]
          Length = 408

 Score =  230 bits (587), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/311 (40%), Positives = 183/311 (58%), Gaps = 14/311 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ GMVEAV+   + P    +P PVLARTPEEV A+   KP LSPNL+ L  V  +GVK
Sbjct: 96  LLERGMVEAVITTMAVPGTHHAPLPVLARTPEEVRASARNKPCLSPNLDLLDQVRESGVK 155

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL F G  CQV ALR++E HL LEKLYV+G  C DN     L +FL+ AS  P+T++H+E
Sbjct: 156 RLAFIGTSCQVHALRAIEDHLGLEKLYVIGIPCTDNVAYPDLLRFLQIASKSPDTIVHHE 215

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL---VDVIAPSCYSCFDYTNALADLVVGYMGV 177
           FMQD++V ++H DGHIE++ Y  L  + L   + +   +C SCFDY N+LAD+ VGY+  
Sbjct: 216 FMQDFRVWMRHEDGHIEKINYVDLDVSALGGELAIFPAACLSCFDYQNSLADITVGYLSA 275

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKM 237
           P    +   +  Q+  VR + G+E+  L++  LE+      G+R+  V E V      +M
Sbjct: 276 P----LPPPERWQWTMVRTKAGEELFELIRPFLEVGTLSERGNRQVGVSEYV------RM 325

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMP 297
            + P +  P  +  LIA+     GP+G+EFAR  ++   +RN  +V  A G+    + +P
Sbjct: 326 LKRPRKRPPFPIRKLIAWMQRNRGPRGMEFARSVIEMKLLRNLQYVRDAHGRLE-RRIVP 384

Query: 298 SYAKKIVEMYN 308
            Y  + +  Y 
Sbjct: 385 DYVYRALATYG 395


>gi|344342959|ref|ZP_08773829.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Marichromatium purpuratum 984]
 gi|343805511|gb|EGV23407.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Marichromatium purpuratum 984]
          Length = 420

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/313 (40%), Positives = 178/313 (56%), Gaps = 19/313 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G VEAV+   + P  R   +P+LARTPEEVLA  G KP+LSPNL  L LV   G+K
Sbjct: 111 LLERGEVEAVITTAAAPGTRFKAQPILARTPEEVLATAGNKPSLSPNLGLLDLVREQGIK 170

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL F G GCQV ALR++E  L LE LYV+G  C DN +   L+ FL+  S  P TV+H+E
Sbjct: 171 RLAFIGTGCQVHALRAIEAELGLEALYVIGIPCSDNVSYPDLEYFLEQISRSPATVVHHE 230

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ + L+H DG +E V Y   P + L  +   +C SCFDY NAL+DL +GYMG    
Sbjct: 231 FMQDFSLWLRHEDGTVERVNYIDFPMDKLHGIFPSACLSCFDYPNALSDLTIGYMGA--- 287

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRR---PFVMETVKADDNAKM 237
                    Q++  R ERG++M  +++  LE       GDR    P  ME +    N   
Sbjct: 288 -----ELGWQWVMARTERGEQMFEMLRPDLEFGTLTEGGDRTRGMPRFMERL----NHPP 338

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMP 297
           G G  +P P  +  L+ +     GP+GLEFAR  ++   +RN  HV R+  +++  + +P
Sbjct: 339 GTG--RP-PLLIRKLVVWLQRNRGPRGLEFARAVIEMKLLRNLNHV-RSKFERQESRVVP 394

Query: 298 SYAKKIVEMYNQN 310
            +  + +  Y ++
Sbjct: 395 GFVYRALAPYAEH 407


>gi|219850322|ref|YP_002464755.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Chloroflexus aggregans DSM
           9485]
 gi|219544581|gb|ACL26319.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chloroflexus aggregans DSM 9485]
          Length = 429

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 125/310 (40%), Positives = 179/310 (57%), Gaps = 14/310 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G+VE V+   + P  R +P P+LARTP+EV A +G KP L+P L+ L  V  AG++
Sbjct: 114 LLERGLVEGVITTGAVPGTRYAPLPILARTPDEVRATRGNKPCLAPTLDVLTQVRQAGLR 173

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+ + G GCQV ALR++E  L LE+LYV+G  C DN T   L +FL+  S  P+TV+H+E
Sbjct: 174 RIAYIGTGCQVHALRAIEDQLGLERLYVIGIPCTDNTTYPDLQRFLQVVSRSPDTVVHHE 233

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL---VDVIAPSCYSCFDYTNALADLVVGYMGV 177
           FMQD+++ LKH DG +E+V +  L    L   + V  P+C SCFDY N L+DL +GYMG 
Sbjct: 234 FMQDFRIWLKHEDGSVEKVNFVDLDVARLGGEIGVFPPACLSCFDYQNGLSDLTIGYMGA 293

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKM 237
           P    +   +  Q+  VR ERG E+ +L++  +E    IS GDR      T       +M
Sbjct: 294 P----LPPDERWQWTLVRTERGVELFNLLRPYIEERAPISGGDR------TRGMPAYIQM 343

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMP 297
            R P +  P  +  L+AF     GPKGLEFAR  ++   +RN   V    G+    + +P
Sbjct: 344 LRKPRRRPPWPIRQLVAFIQRRSGPKGLEFARSVIEMKLLRNLQFVRERHGRL-ERRIVP 402

Query: 298 SYAKKIVEMY 307
            Y  + +  Y
Sbjct: 403 GYVYRALARY 412


>gi|288940912|ref|YP_003443152.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Allochromatium vinosum DSM
           180]
 gi|288896284|gb|ADC62120.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Allochromatium vinosum DSM 180]
          Length = 423

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/308 (41%), Positives = 169/308 (54%), Gaps = 15/308 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G VEAV+   + P  R    PVLARTP EVLA  G KP LSPNL  L  V   G+K
Sbjct: 112 LLEQGRVEAVITTGAAPGTRFKSEPVLARTPAEVLATAGNKPCLSPNLRLLDQVREQGIK 171

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL F G  CQV  LR+VE  L LEKLYV+G  C DN T   L+ FL   S  P+T++HYE
Sbjct: 172 RLAFIGTSCQVHMLRAVEAELGLEKLYVIGIPCSDNVTYPDLEYFLTQVSRSPQTIVHYE 231

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ + ++H DGH E V Y   P + L  +   SC SCFDY N L DL VGYMG    
Sbjct: 232 FMQDFSLWMRHEDGHKERVNYIDFPMDKLHGIFPSSCLSCFDYPNTLCDLTVGYMGA--- 288

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++  R E G+E+  L++  LEI    SSGDR   +   +     A++ + 
Sbjct: 289 -----ELGWQWVLARTEIGEELFELIRPDLEIGELTSSGDRTRGMPHYI-----ARLTQP 338

Query: 241 PSQPAPKF-VGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
           P    P F V  L+A+     G KGLEFAR  ++   +RN  +V   + +  A + +P +
Sbjct: 339 PGAKKPPFLVRKLVAYMQRKKGSKGLEFARAIIEMKLLRNLNYVRSKFPRFEA-RVVPEH 397

Query: 300 AKKIVEMY 307
             + +E Y
Sbjct: 398 VYQTLEPY 405


>gi|390950184|ref|YP_006413943.1| coenzyme F420-reducing hydrogenase subunit beta [Thiocystis
           violascens DSM 198]
 gi|390426753|gb|AFL73818.1| coenzyme F420-reducing hydrogenase, beta subunit [Thiocystis
           violascens DSM 198]
          Length = 421

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 121/287 (42%), Positives = 158/287 (55%), Gaps = 18/287 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G VEAV+   + P  R   +P+LART  EVLA  G KP LSPNL+ L  V   G+K
Sbjct: 112 LLEQGKVEAVITTGAAPGTRFKAQPILARTAAEVLATAGNKPCLSPNLSLLDSVREQGIK 171

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G  CQV ALR+VE  L LE+LYV+G  C DN   E L  FL   S  PETV+H+E
Sbjct: 172 RLALIGTSCQVHALRAVEAELGLEQLYVIGIPCSDNVAYEDLTYFLTQVSRSPETVVHHE 231

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ + ++H DGH+E + +   P + L  +   +C SCFDY NAL+DL VGYMG    
Sbjct: 232 FMQDFSLWMRHEDGHVERLNFVDFPMDKLHGIFPSACLSCFDYPNALSDLTVGYMGA--- 288

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRR---PFVMETVKADDNAKM 237
                    Q++  R ERG+E+  L++  LEI      GDRR   P  ME +     AK 
Sbjct: 289 -----ELGWQWVLARTERGEELFELMRPDLEIGELTERGDRRRGMPRFMERLTHPPGAKR 343

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVN 284
                   P  +  L+A      GP GLEFAR  ++   +RN  +V 
Sbjct: 344 -------PPFLIRKLVAMLQRRKGPGGLEFARAVIEMKLLRNLNYVR 383


>gi|344337911|ref|ZP_08768844.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thiocapsa marina 5811]
 gi|343801965|gb|EGV19906.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thiocapsa marina 5811]
          Length = 428

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/313 (38%), Positives = 172/313 (54%), Gaps = 21/313 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G V+AV+   + P  R   +P+LARTP+EVLA  G KP LSP L+ +  V   G+K
Sbjct: 112 LLEQGKVDAVITTAAAPGTRFKAQPILARTPQEVLATAGNKPCLSPALSLIDAVREQGIK 171

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G GCQV  LR+ E  L LE+LYV+G  C DN +   L+ FL   S  PETV+H+E
Sbjct: 172 RLAVVGTGCQVHQLRAAEAELGLERLYVIGIPCSDNVSYPDLEYFLTQVSKSPETVVHHE 231

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ + ++H DGH+E + Y   P + L  +   SC SCFDY N L+D+ +GYMG P  
Sbjct: 232 FMQDFSLWMRHEDGHVERLNYIDFPMDKLHGIFPSSCLSCFDYANTLSDITIGYMGAPLG 291

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRR---PFVMETVKADDNAKM 237
                    Q++ VR   G+E+  +++  LEI     SGDR    P  ME        ++
Sbjct: 292 W--------QWVMVRTPTGEELFEMLRPELEIGALTESGDRNRGMPRYME--------RL 335

Query: 238 GRGPSQPAPKF-VGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHM 296
              P Q  P   +  L+A      GPKGLEFAR  ++   +RN  +V R+   K   + +
Sbjct: 336 SHPPGQKRPPMPIRKLVAMLQRTRGPKGLEFARAVIEMKLLRNLNYV-RSKFPKFESRVV 394

Query: 297 PSYAKKIVEMYNQ 309
           P +  + +E Y +
Sbjct: 395 PYHVYETLEPYAE 407


>gi|347756039|ref|YP_004863602.1| Coenzyme F420-reducing hydrogenase subunit beta [Candidatus
           Chloracidobacterium thermophilum B]
 gi|347588556|gb|AEP13085.1| Coenzyme F420-reducing hydrogenase, beta subunit [Candidatus
           Chloracidobacterium thermophilum B]
          Length = 433

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 180/312 (57%), Gaps = 14/312 (4%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+VE V+   ++P     P+PVLARTPEEVLA +G K  LSP L  +    AAG+KR
Sbjct: 98  LEQGLVEGVILTGTEPGTLNKPQPVLARTPEEVLACRGNKFGLSPTLEKIDDAIAAGLKR 157

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           ++  G  CQ  ALR +E  L  ++L+ LG  C DN T E    FLK+ S  P+TV+H EF
Sbjct: 158 VMVVGTPCQFHALRVIESTLPFDELWCLGILCSDNTTHENYMTFLKSVSRSPDTVVHMEF 217

Query: 122 MQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           M D+++ ++H +G +E++ +  +P +++  D+IAPSC  CF+YTN+LADL VGYMG    
Sbjct: 218 MPDFRLWMRHTNGEVEKLNFVEIPMHEIGPDLIAPSCRVCFNYTNSLADLSVGYMG---- 273

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ +RN +G  +L L+++ +E++    SG  R   M+       +++G+ 
Sbjct: 274 ---GGMPDNQWLLIRNAKGWRLLDLIRDDVELSEPTESGS-RALAMKGFL----SQLGKP 325

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
            ++ AP+ V  LIAF     GP+GLEFAR  ++         V R  G + A   +P YA
Sbjct: 326 YTKGAPRPVKKLIAFLQRRFGPRGLEFARTRVEMKLAEGLFTVRRKAGHREA-LLVPRYA 384

Query: 301 KKIVEMYNQNGQ 312
              +E Y   G+
Sbjct: 385 YVPLEKYVLPGE 396


>gi|91978240|ref|YP_570899.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Rhodopseudomonas palustris BisB5]
 gi|91684696|gb|ABE40998.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Rhodopseudomonas palustris BisB5]
          Length = 410

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 175/309 (56%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP D+  P PVL   PE +   +G++   +P+L  L    AAG K
Sbjct: 103 LLETGAVDAVLTMAQDPADKWKPMPVLVTKPEGMAQCRGMRMGYAPSLALLEPARAAGYK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQV ALRS+E  L  E+LYV+GT C DN T E    FL   S +PET+ + E
Sbjct: 163 RIAVIGIPCQVYALRSLEQKLGFERLYVIGTPCSDNTTTENFHGFLDLLSDKPETITYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG ++E+P+  LP + L  D    +C +C DYTN LAD+ VGYM    
Sbjct: 223 FRADYHVELRFTDGRVQEIPFLLLPISKLKPDFFPITCRTCVDYTNTLADITVGYMA--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRNERG+E+L+L+ + + ++   S+G+R   V   +K  + A  G 
Sbjct: 280 ------GRGEQWLLVRNERGEELLNLLGDEVRLSEPTSAGNRTAPVKGFLKNTELAAGGL 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++   + + +  VGP+GLEF R  ++   +   LH+ R + K++    +P++
Sbjct: 334 -PVRGMPNWLRPFMGWLMPKVGPRGLEFGRARVEMKAVETVLHLRRNY-KQKIKNMVPAH 391

Query: 300 AKKIVEMYN 308
              +V+ Y 
Sbjct: 392 VWALVKPYG 400


>gi|316935327|ref|YP_004110309.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Rhodopseudomonas palustris
           DX-1]
 gi|315603041|gb|ADU45576.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rhodopseudomonas palustris DX-1]
          Length = 407

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 180/316 (56%), Gaps = 15/316 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP D+  P PVL   PE +   +G++   +P+L  L    AAG K
Sbjct: 100 LLETGAVDAVIAMAPDPSDKWKPMPVLVTKPEGMAQCRGMRMGYAPSLALLEPAIAAGYK 159

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GV CQ+ ALR ++  L LEKLYV+GT C DN T E    FL   S +PET+ + E
Sbjct: 160 RLAVIGVPCQIYALRRLQDQLGLEKLYVIGTPCSDNTTTEAFHGFLDLLSDKPETITYLE 219

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V ++  DG ++ VP+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 220 FCADYHVEMRFDDGKVKRVPFLLLPISKLPPDFFPITCRTCVDYTNTLADITVGYMG--- 276

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRNERG+E+L L+ + ++++   S+G+R   V   +K  + A  G 
Sbjct: 277 ------GRGEQWLLVRNERGEELLRLLGDEVKLSEPTSAGNRVAPVKGFLKNTELAAGGL 330

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++  L+ + +  VGP+G+EFAR  ++   +   LH+ R + K +    +P++
Sbjct: 331 -PVRGMPNWLRPLMGWLMPKVGPRGIEFARARVEMKAVETVLHLRRHY-KHKMKNMIPAH 388

Query: 300 AKKIVEMYN---QNGQ 312
              +V+ Y    Q+G+
Sbjct: 389 VWALVKPYGLEPQDGE 404


>gi|189347280|ref|YP_001943809.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Chlorobium limicola DSM 245]
 gi|189341427|gb|ACD90830.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chlorobium limicola DSM 245]
          Length = 416

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 176/318 (55%), Gaps = 23/318 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+TG+V+ VV +Q        P+ VLA T EE+ AA+G KP LSP L  L       VK+
Sbjct: 98  LQTGLVDGVVTLQGT---TFQPKAVLATTAEEIHAARGNKPVLSPVLQALHTAWKKKVKK 154

Query: 62  LLFCGVGCQVQALR---SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
           LL  G  C V  LR   +    L+  +L V+G  C DN     L    +  S  P+TVL+
Sbjct: 155 LLVVGASCHVHVLRDFAATHPWLDGIELLVVGIPCTDNLEPAHLKWVFRHISRSPDTVLN 214

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGV 177
           +EFMQDYKVH+ H  G +E++P+F LPA  L V V + SC SCFDY N+LAD+ VGY G 
Sbjct: 215 FEFMQDYKVHIVHSTGKVEKIPFFSLPAAVLKVGVFSNSCMSCFDYINSLADITVGYFGA 274

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKM 237
           P YT        Q+I +R ++GK++  LVKN + + P   SGD        VKA     +
Sbjct: 275 P-YTA---DGKEQWILIRTDKGKKLFDLVKNDISVRPETGSGDS----FGAVKASIQPTI 326

Query: 238 G-------RGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKK 290
           G        G  +  P F G L++      GP+G+EFARYS+D H +RNY  V R +  +
Sbjct: 327 GPILQPHLLGDRRSMPLFFGKLLSALKAKKGPRGIEFARYSIDIHALRNYFFV-RHYTPE 385

Query: 291 RADKHMPSYAKKIVEMYN 308
           R D  +P + + +V++YN
Sbjct: 386 RLDVLVPEHIRHLVKLYN 403


>gi|39934573|ref|NP_946849.1| coenzyme F420 hydrogenase subunit beta [Rhodopseudomonas palustris
           CGA009]
 gi|39648422|emb|CAE26943.1| possible coenzyme F420 hydrogenase beta subunit [Rhodopseudomonas
           palustris CGA009]
          Length = 409

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP D+  P PVL   PE +   +G++   +P+L  +    AAG K
Sbjct: 102 LLETGAVDAVIAMAPDPSDKWKPMPVLVTKPEGMAQCRGMRMGYAPSLALIEPAIAAGYK 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GV CQ+ ALR ++  L LEKLYV+GT C DN T E    FL   S +PET+ + E
Sbjct: 162 RLAVIGVPCQIYALRRLQDQLGLEKLYVIGTPCSDNTTTEAFHGFLDLLSDKPETITYLE 221

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG+++ +P+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 222 FRADYHVELRFDDGNVKAIPFLLLPISKLPPDFFPITCRTCVDYTNTLADITVGYMG--- 278

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRNERG+E+L L+ + + ++   S+G+R   V   +K  + A  G 
Sbjct: 279 ------GRGEQWLLVRNERGEELLKLLGDDVRLSEPTSAGNRVAPVKGFLKNTELAAGGL 332

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++   + + +  VGP+G+EFAR  ++   +   LH+ R + K +    +P++
Sbjct: 333 -PVRGMPNWLRPFMGWLMPKVGPRGIEFARARVEMKAVETVLHLRRHY-KHKMKNMIPAH 390

Query: 300 AKKIVEMYN---QNGQ 312
              +V+ Y    Q+G+
Sbjct: 391 VWALVKPYGLEPQDGE 406


>gi|192290086|ref|YP_001990691.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein [Rhodopseudomonas palustris
           TIE-1]
 gi|192283835|gb|ACF00216.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 409

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/316 (36%), Positives = 179/316 (56%), Gaps = 15/316 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP D+  P PVL   PE +   +G++   +P+L  +    AAG K
Sbjct: 102 LLETGAVDAVIAMAPDPSDKWKPMPVLVTKPEGMAQCRGMRMGYAPSLALIEPAIAAGYK 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GV CQ+ ALR ++  L LEKLYV+GT C DN T E    FL   S +PET+ + E
Sbjct: 162 RLAVIGVPCQIYALRRLQDQLGLEKLYVIGTPCSDNTTTEAFHGFLDLLSDKPETITYLE 221

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG+++ +P+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 222 FRADYHVELRFDDGNVKAIPFLLLPISKLPPDFFPITCRTCVDYTNTLADITVGYMG--- 278

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRNERG+E+L L+ + + ++   S+G+R   V   +K  + A  G 
Sbjct: 279 ------GRGEQWLLVRNERGEELLKLLGDDVRLSEPTSAGNRVAPVKGFLKNTELAAGGL 332

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++   + + +  VGP+G+EFAR  ++   +   LH+ R + K +    +P++
Sbjct: 333 -PVRGMPNWLRPFMGWLMPKVGPRGIEFARARVEMKAVETVLHLRRHY-KHKMKNMIPAH 390

Query: 300 AKKIVEMYN---QNGQ 312
              +V+ Y    Q+G+
Sbjct: 391 VWALVKPYGLEPQDGE 406


>gi|86751131|ref|YP_487627.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Rhodopseudomonas palustris HaA2]
 gi|86574159|gb|ABD08716.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Rhodopseudomonas palustris HaA2]
          Length = 410

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 174/309 (56%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP D+  P PVL  +PE +   +G++   +P+L  L    AAG K
Sbjct: 103 LLETGAVDAVLTMAPDPADKWKPMPVLVTSPEGMAQCRGMRMGYAPSLALLEPARAAGYK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQV ALRS+E  L  E+LYV+GT C DN T E   +FL   S  PET+ + E
Sbjct: 163 RIAVIGIPCQVYALRSLERKLGFERLYVIGTPCSDNTTTENFHEFLDLLSDRPETITYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG ++ +P+  LP + L  D    +C +C DYTN LAD+ VGYM    
Sbjct: 223 FRADYHVELRFTDGRVQAIPFLLLPISKLKPDFFPITCRTCVDYTNTLADITVGYMA--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN+RG+E+L L+ + + ++   S+G+R   V   +K  + A  G 
Sbjct: 280 ------GRGEQWLLVRNQRGEELLDLLGDEVRLSEPTSAGNRTAPVKGFLKNTELAAGGL 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++   + + +  VGP+GLEF R  ++   +   LH+ R + K++    +P++
Sbjct: 334 -PVRGMPNWLRPFMGWLMPKVGPRGLEFGRARVEMKAVETVLHLRRNY-KQKIKNMVPAH 391

Query: 300 AKKIVEMYN 308
              +V+ Y 
Sbjct: 392 VWALVKPYG 400


>gi|209963491|ref|YP_002296406.1| coenzyme F420 hydrogenase [Rhodospirillum centenum SW]
 gi|209956957|gb|ACI97593.1| coenzyme F420 hydrogenase [Rhodospirillum centenum SW]
          Length = 423

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 171/310 (55%), Gaps = 14/310 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DPDD+  P PVL   PE +   +G++   +P L  L      G +
Sbjct: 103 LLETGAVDAVLTMAPDPDDKWRPVPVLVTKPEGMARCRGMRMGYAPLLALLEPARERGYR 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQV ALR +E  L  E+LYV+G  C DN T E   +FL   S  PET+ + E
Sbjct: 163 RLAVVGIPCQVHALRRLEAELGFERLYVIGIPCSDNTTTERFHQFLNLLSDRPETITYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  D+ V L+  DG ++E+P+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 223 FRADFYVELRFDDGRVKEIPFLLLPISKLPTDFFPLTCRTCVDYTNVLADITVGYMG--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  Q  Q++ VRNERG+E+LSL+ + + ++   S+G R+  V   ++    A  G 
Sbjct: 280 ------GQGEQWLLVRNERGEELLSLLGDEVRLSEPGSAGKRQGPVKGFIENTKRAAGGL 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHM-PS 298
            P +  P ++  L+ + +  VGPKGLEFAR  ++       LH+ R   + R  KHM P 
Sbjct: 334 -PLRQMPDWLRPLVGWLMPKVGPKGLEFARARVEMKASETVLHLRRE--QPRRMKHMVPP 390

Query: 299 YAKKIVEMYN 308
           +  ++V  Y 
Sbjct: 391 HVWELVRPYG 400


>gi|345873334|ref|ZP_08825247.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thiorhodococcus drewsii AZ1]
 gi|343917293|gb|EGV28098.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thiorhodococcus drewsii AZ1]
          Length = 424

 Score =  204 bits (520), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 123/311 (39%), Positives = 175/311 (56%), Gaps = 15/311 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G VEAV+   + P  R    PVLARTPEEVLA  G KP LSPNLN +  +   G+K
Sbjct: 112 LLEQGKVEAVITTGAAPGTRFKAEPVLARTPEEVLATAGNKPCLSPNLNLIDQIRDQGIK 171

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL F G  CQV +LR++E  L LE+LYV+G  C DN T   L+ FL   S  P+TV+H+E
Sbjct: 172 RLAFIGTSCQVHSLRAIEAELGLERLYVIGIPCSDNVTYPDLEYFLTQISRSPKTVVHHE 231

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FMQD+ + L+H +G +E V Y   P + L  +   +C SCFDY N+L DL VGYMG    
Sbjct: 232 FMQDFSLWLRHENGKVERVNYIDFPMDKLHGIFPSACLSCFDYPNSLCDLTVGYMGA--- 288

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
                    Q++ VR E G+E+L L+K  LE +     GDR   + + +     A++   
Sbjct: 289 -----ELGWQWVLVRTETGEELLELLKPDLEFSELTEGGDRSRGMPKFI-----ARLTHP 338

Query: 241 PSQPAPKF-VGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
           P    P F +  L+A+     GPKGLEFAR  ++   +RN  +V   + +  + + +P +
Sbjct: 339 PGAKKPPFLIRRLVAYLQRKKGPKGLEFARAIIEMKLLRNLNYVRSKFARVES-RVVPYH 397

Query: 300 AKKIVEMYNQN 310
             + +E Y + 
Sbjct: 398 VYQALEPYAET 408


>gi|115523321|ref|YP_780232.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           [Rhodopseudomonas palustris BisA53]
 gi|115517268|gb|ABJ05252.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 409

 Score =  204 bits (519), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 172/309 (55%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG VEAV+ +  DP D+  P PV+   P+ +   +G++   +P L+ L    A G K
Sbjct: 103 LLETGAVEAVLTMAQDPADKWKPMPVIVTDPKAMAQCRGMRMGYAPLLSLLEPARARGFK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQ+ ALR +E  L  EK+YV+GT C DN T E    FL   S +P+T+ + E
Sbjct: 163 RIAVIGIPCQIYALRQLEKSLGFEKIYVVGTPCSDNTTTENFHGFLDLLSDQPDTITYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG ++E+P+  LP + L     P +C +C DYTN LAD+ VGYMG   
Sbjct: 223 FRADYHVELRFDDGRVKEIPFLLLPISKLPSTFFPITCRTCVDYTNTLADITVGYMG--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  Q  Q++ VRNERG+E+L L+ + ++++   S+G R   V   +K  + A  G 
Sbjct: 280 ------GQGEQWLLVRNERGEEILKLLGDEVKLSEPGSAGKRAAPVKGFLKNTELAAGGL 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++   + + +  VGP+GLEFAR  L+   +   LH+ R +  +R    +P +
Sbjct: 334 -PVRGMPNWLRPFMGWLMPKVGPRGLEFARARLEMKAVETVLHLRRNY-PQRMKNMIPDH 391

Query: 300 AKKIVEMYN 308
              +V+ Y 
Sbjct: 392 VWALVKPYG 400


>gi|90422756|ref|YP_531126.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Rhodopseudomonas palustris BisB18]
 gi|90104770|gb|ABD86807.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Rhodopseudomonas palustris BisB18]
          Length = 409

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 180/318 (56%), Gaps = 19/318 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DPDD+  P PV+    E + A +G++   +P L+ L     AG K
Sbjct: 103 LLQTGAVDAVLTMAQDPDDKWKPMPVIVTKAEGMKACRGMRMGYAPLLSLLEPARDAGHK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQ+ ALR +E  L  EKLY +GT C DN T E   +FL   S +P+++ + E
Sbjct: 163 RIAVIGIPCQIYALRQLEQKLGFEKLYAIGTPCSDNTTTESFHQFLDLLSDKPDSITYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG ++E+P+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 223 FRADYHVELRFDDGRVKEIPFLLLPISKLPPDFFPMTCRTCVDYTNTLADITVGYMG--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  Q  Q++ +RNERG+E+L ++ + + ++   S+G R   V   +K   N ++  
Sbjct: 280 ------GQGEQWLLIRNERGEELLRVLGDEVRLSEPGSAGKRTAPVKGFMK---NVELAA 330

Query: 240 G--PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMP 297
           G  P +  P ++  L+ + +  VGP+GLEFAR  ++   I + LH+ R +  +R    +P
Sbjct: 331 GGLPVRGMPNWLRPLMGWLMPKVGPRGLEFARTRVEMKAIESVLHLRRQY-PQRIKNMVP 389

Query: 298 SYAKKIVEMYN---QNGQ 312
           ++   +V+ Y    Q+G+
Sbjct: 390 AHVWALVKPYGIEPQDGE 407


>gi|556606|gb|AAA50354.1| ORF, partial [Nostoc sp. PCC 7120]
          Length = 265

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 117/166 (70%), Gaps = 7/166 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS---PNLNTLALVEAA 57
           ML  G+VE VVCVQ+  +DR  P PV+ARTP    ++   KPTLS   P  N+      +
Sbjct: 103 MLNHGLVEGVVCVQNSKEDRFQPMPVIARTPRRNTSSCVNKPTLSQTFPYWNS----RKS 158

Query: 58  GVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           G+KRLL  GVGCQ+QALR+VE  L LEKLYVLGT CVDN TR GL KFL+  S  PETV+
Sbjct: 159 GMKRLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVV 218

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDY 163
           HYEFMQD+++H KH DG IE+VP+F L  N L DV APSC SCFDY
Sbjct: 219 HYEFMQDFRIHFKHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDY 264


>gi|383757271|ref|YP_005436256.1| hypothetical protein RGE_14160 [Rubrivivax gelatinosus IL144]
 gi|381377940|dbj|BAL94757.1| hypothetical protein RGE_14160 [Rubrivivax gelatinosus IL144]
          Length = 413

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 173/313 (55%), Gaps = 20/313 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP+DR  P P L   P E+   +G++   +P L+ L    AAG K
Sbjct: 103 LLETGAVDAVLTMAPDPEDRWRPVPTLVTKPGELARCRGMRMGYAPLLSLLEPAVAAGHK 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQV ALR++E  L LE+LYV+GT C DN T E   +FL   + +PE++ + E
Sbjct: 163 RLAVIGIPCQVYALRALEQELGLEQLYVIGTPCSDNTTTENFHRFLGLLTPKPESITYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V ++  DG    VP+  LP + L  D    +C +C DY+N LAD+ VGYMG   
Sbjct: 223 FRADYHVEIRFDDGRQRRVPFLQLPLSQLPTDFFPLTCRTCVDYSNVLADITVGYMG--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR----RPFVMETVKADDNA 235
                  +  Q++ VRNERG+++L L+ + + +    S+G R    + F+  T +A    
Sbjct: 280 ------GEGEQWLLVRNERGEKILGLLGDEVTLAEPGSAGKREGPVKGFLANTERAAGGL 333

Query: 236 KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKH 295
            + R PS     ++  ++ + +  VGP+GLEFAR  L+   +   LH+ R    K  +  
Sbjct: 334 PLRRMPS-----WLRPIVGWLMPKVGPRGLEFARARLEMKAVETVLHLRREQPAKMKN-M 387

Query: 296 MPSYAKKIVEMYN 308
           +P +  K+VE Y 
Sbjct: 388 VPPHVWKLVEPYG 400


>gi|194333446|ref|YP_002015306.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Prosthecochloris aestuarii
           DSM 271]
 gi|194311264|gb|ACF45659.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 381

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/316 (32%), Positives = 178/316 (56%), Gaps = 15/316 (4%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
            +   +EAVV +    +++   +PVLA T +E+  ++G KP LSP L +L      G+K+
Sbjct: 69  FENNTIEAVVTLHRTRENQFFSQPVLAETAQEIYDSRGNKPVLSPVLRSLETAYRKGIKK 128

Query: 62  LLFCGVGCQVQALRSVEH---HLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
           LL  G  C +  LR  +    +L   +++ +G  CVDN  R+     LK  S  P + +H
Sbjct: 129 LLVIGAACHLHVLRDFQERFTYLQDMEIFTIGIPCVDNIDRQRWPWVLKRMSRSPLSAMH 188

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVD--VIAPSCYSCFDYTNALADLVVGYMG 176
            EFMQD+++H++H +G +E+VP+F LP  +L D  +   +C SCFDY N+LAD+ VGY+ 
Sbjct: 189 MEFMQDFRIHIRHTNGMVEKVPFFSLP-QELSDPSIFPVACMSCFDYLNSLADVTVGYLA 247

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNA- 235
                 +   +  Q++ VR ++GK ++  ++N L   P     D + FVM T +A   + 
Sbjct: 248 AE----LRPDEKRQWVLVRTQKGKTLIDAIRNELTCYPEEGKWDCKKFVMNTAEATIASM 303

Query: 236 ---KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA 292
                   P +  P ++G++++  ++L GPKG+ FA YS D+H IR+Y +V   + ++  
Sbjct: 304 KVQSRTYSPDRKIPLWLGHILSGVLSLAGPKGIGFAHYSTDFHLIRHYYYVRERFPEQ-L 362

Query: 293 DKHMPSYAKKIVEMYN 308
           ++ +P + + I+E Y+
Sbjct: 363 ERLVPRHVRSILEEYD 378


>gi|402851269|ref|ZP_10899434.1| hydrogenase [Rhodovulum sp. PH10]
 gi|402498471|gb|EJW10218.1| hydrogenase [Rhodovulum sp. PH10]
          Length = 413

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/284 (37%), Positives = 160/284 (56%), Gaps = 11/284 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TGMV+AV+ +  DP D   P+PVL   PE +   +G++   +P L  L    A G +
Sbjct: 108 LLETGMVDAVLTMAPDPSDVWRPKPVLVTKPEAMAQCRGMRMGWAPLLALLEPARAQGFE 167

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           ++   G+ CQ+ ALR++E  L  EK+YV+GT C DN T E   +FL   + +P T+ + E
Sbjct: 168 KIAVIGIPCQIHALRALEDDLGFEKIYVVGTPCSDNTTTERFHEFLALLADDPSTITYLE 227

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLV-DVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG  + VP+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 228 FRADYCVELRFSDGSEKRVPFLMLPLSKLPRDFFPLTCRTCVDYTNTLADITVGYMG--- 284

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN+RG E+LSL+ + +   P  S+G R   V   +K  + A  G 
Sbjct: 285 ------GEGEQWLLVRNDRGAEILSLLGDEVRTAPPGSAGKRAAPVKGFLKNTERAAGGL 338

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHV 283
            P +  P F+  L+A+ +  +GP+GLEFAR  ++   I   LH+
Sbjct: 339 -PVRGTPNFLRPLVAWLMPKIGPRGLEFARARVEMKAIETILHL 381


>gi|374623268|ref|ZP_09695781.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Ectothiorhodospira sp. PHS-1]
 gi|373942382|gb|EHQ52927.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Ectothiorhodospira sp. PHS-1]
          Length = 398

 Score =  197 bits (501), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 173/310 (55%), Gaps = 14/310 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ + +DP DR  P+P+L    E++   +G++   +P L  L    A G +
Sbjct: 91  LLETGQVDAVLTMTADPQDRWRPQPILVTRAEDMARCRGMRMGYAPLLAHLEPALAQGYR 150

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQ+ ALR++E  L+L+ L+V+GT C DN T E   +FL   +  PETV + E
Sbjct: 151 RLAVIGLPCQIYALRAIEPELDLDALHVIGTPCSDNTTTEHFHEFLALLADRPETVTYLE 210

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG ++ +P+  LP + L  D    +C +C DYTN LAD+ VGYM    
Sbjct: 211 FRADYHVELRFEDGRVQTIPFLKLPISKLPRDFFPLTCQTCVDYTNVLADITVGYMA--- 267

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRNE+G+ +L L+ + +   P  S+G R+  V   +K  + A  G 
Sbjct: 268 ------GRGEQWLVVRNEKGEALLDLLGDEVRTAPCTSAGKRQGPVKGFMKNTERAAGGL 321

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHM-PS 298
            P +  P +   L AF +  +GP+GLEFAR  ++   +   LH+ RA   +   KHM P 
Sbjct: 322 -PLRGMPDWARPLAAFLMPRIGPRGLEFARARVEMKAVETVLHLRRAQPGRM--KHMIPD 378

Query: 299 YAKKIVEMYN 308
           +  ++V+ Y 
Sbjct: 379 HVWQLVKPYE 388


>gi|159045808|ref|YP_001534602.1| putative coenzyme F420 hydrogenase [Dinoroseobacter shibae DFL 12]
 gi|157913568|gb|ABV95001.1| putative coenzyme F420 hydrogenase [Dinoroseobacter shibae DFL 12]
          Length = 409

 Score =  196 bits (497), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 171/312 (54%), Gaps = 18/312 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G V+AV+ +  DP+D   PRPV+   P E+   +G++   +P L+ L      G++
Sbjct: 101 LLEDGAVDAVLGMGPDPEDSWRPRPVIITDPAEMAHLRGMRMGYAPLLSLLEPAAKTGLR 160

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQV ALR++E  L  E+LYV+GT C DN T E   +FL   S  PE + + E
Sbjct: 161 RLAIIGIPCQVYALRAMEAELGFERLYVIGTPCSDNTTTENFHQFLARLSPRPEDITYLE 220

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+ +DG   ++P+  LP +DL +   P +C +C DYTN LAD+ VGYM    
Sbjct: 221 FRADYHVELRFIDGSRRDIPFLKLPLSDLPNDFFPMTCRTCVDYTNTLADITVGYMA--- 277

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVK--ADDNAKM 237
                  +  Q++ VRN RG+E+L  + + + +    S+G R      +VK  A++ A+ 
Sbjct: 278 ------GEGDQWLIVRNARGQEILDRLGDEVRLETPGSAGKR----AGSVKGFAENTARA 327

Query: 238 GRG-PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHM 296
             G P +  P +   ++ + +  +GPKGLEFAR  ++   +   LH+ RA   KR    +
Sbjct: 328 AGGLPLRKMPDWARGIVGWLMPRIGPKGLEFARARVEMKAVETVLHLRRA-HPKRMRAMI 386

Query: 297 PSYAKKIVEMYN 308
           P +  ++ E Y 
Sbjct: 387 PDHVWRLAEPYG 398


>gi|312114853|ref|YP_004012449.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219982|gb|ADP71350.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 417

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 174/321 (54%), Gaps = 12/321 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ + +D  DR  P+P L     ++  A+G++   +P L  L     AG K
Sbjct: 101 LLETGAVDAVLTMVADDADRWRPKPALITRAADMAKARGMRMGYAPLLALLEPAREAGHK 160

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   GV CQ+ ALR +E  L  E++Y +GT C DN T E   KFL   S +PET+ + E
Sbjct: 161 RIAVIGVPCQIFALRGIEQELGFERVYAIGTPCSDNTTTENFHKFLNLLSDKPETITYLE 220

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  +G ++E+P+  LP + L  D    +C +C DYTN+L+D+ VGYM    
Sbjct: 221 FRADYHVELRFENGKVKEIPFLLLPISKLPADFFPLTCRTCVDYTNSLSDITVGYMA--- 277

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  Q  Q++ VRNE G+E+L L+ + + ++   ++G R   V   +K  + A  G 
Sbjct: 278 ------GQGQQWLIVRNETGEELLRLLGDEVSLSEPGTAGKRDGPVKGFLKNTELAAGGL 331

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P +   +  + +  VGP+GLEFAR  ++   +   LH+ RA   KR    +P +
Sbjct: 332 -PMRSMPNWARPIAGWLMPKVGPRGLEFARARVEMKAVETVLHL-RAKLPKRIHNMVPEH 389

Query: 300 AKKIVEMYNQNGQIDQMLSSK 320
              +VE Y     + + +SSK
Sbjct: 390 VWALVERYGLVPSLSERVSSK 410


>gi|332527610|ref|ZP_08403657.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332112013|gb|EGJ11990.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 404

 Score =  194 bits (492), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 171/309 (55%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DP+DR  P P L   P ++   +G++   +P L+ L    AAG K
Sbjct: 94  LLETGAVDAVLTMAPDPEDRWRPVPTLVTKPGDLARCRGMRMGYAPLLSLLEPAVAAGHK 153

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQV ALR++E  L LE+LYV+GT C DN T E   +FL   + +PE++ + E
Sbjct: 154 RLAVIGIPCQVYALRALEQELGLEQLYVIGTPCSDNTTTENFHRFLGLLTPKPESITYLE 213

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V ++  DG    VP+  LP + L  D    +C +C DY+N LAD+ VGYMG   
Sbjct: 214 FRADYHVEIRFDDGRQRRVPFLQLPLSQLPTDFFPLTCRTCVDYSNVLADITVGYMG--- 270

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRNERG+++L L+ + + +    S+G R   V   +   + A  G 
Sbjct: 271 ------GEGEQWLLVRNERGEKILGLLGDEVTLAEPGSAGKREGPVKGFLANTERAAGGL 324

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++  ++ + +  VGP+GLEFAR  L+   +   LH+ R    K  +  +P +
Sbjct: 325 -PLRRMPAWLRPIVGWLMPKVGPRGLEFARARLEMKAVETVLHLRREQPAKMKN-MVPPH 382

Query: 300 AKKIVEMYN 308
             ++V+ Y 
Sbjct: 383 VWELVQPYG 391


>gi|194337716|ref|YP_002019510.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310193|gb|ACF44893.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 391

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 165/295 (55%), Gaps = 32/295 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+T +V+AV+ +  +P   L P+ VLA+T +++  A+G KP LSP L  L        +R
Sbjct: 75  LQTNLVDAVLTLHGEP---LQPKAVLAKTAQDIHEARGNKPVLSPVLQALHTAYREKTRR 131

Query: 62  LLFCGVGCQVQALRSVE----HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           LL  G  C V  +R       +  +L+ LY++G  C DN     L    +  S  PETV+
Sbjct: 132 LLVVGAACHVHMVRDFTRKSPYFADLD-LYIVGIPCTDNLEPSHLQWVFRNISKNPETVI 190

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMG 176
           ++EFMQDY+VH+ H  G +E++P+FCLP+  + V V   SC SCFDY N+L+D+ VGY+G
Sbjct: 191 NFEFMQDYRVHILHKAGKVEKIPFFCLPSAVMKVGVFPNSCLSCFDYINSLSDITVGYLG 250

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR--------RPFVMET 228
            P     S  +  Q+I VR ERG+++L L+ + +E +P +  GD         +P +M  
Sbjct: 251 AP----YSKNRKTQWIIVRTERGEKLLDLINDEIETSPEVFFGDSHSAVQAALQPTLMPI 306

Query: 229 V---KADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNY 280
           +   K DD   M        PK++G  ++      GP G EFA+YS+D H IRN+
Sbjct: 307 LQPEKLDDRKAM--------PKWLGIYLSRKKAKSGPGGTEFAKYSIDIHAIRNF 353


>gi|119356035|ref|YP_910679.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353384|gb|ABL64255.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chlorobium phaeobacteroides DSM 266]
          Length = 428

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 165/295 (55%), Gaps = 32/295 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+T +V+AV+ +  +P   L P+ VLA+T +++  A+G KP LSP L  L        +R
Sbjct: 112 LQTNLVDAVLTLHGEP---LQPKAVLAKTAQDIHEARGNKPVLSPVLQALHTAYREKTRR 168

Query: 62  LLFCGVGCQVQALRSVE----HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           LL  G  C V  +R       +  +L+ LY++G  C DN     L    +  S  PETV+
Sbjct: 169 LLVVGAACHVHMVRDFTRKSPYFADLD-LYIVGIPCTDNLEPSHLQWVFRNISKNPETVI 227

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMG 176
           ++EFMQDY+VH+ H  G +E++P+FCLP+  + V V   SC SCFDY N+L+D+ VGY+G
Sbjct: 228 NFEFMQDYRVHILHKAGKVEKIPFFCLPSAVMKVGVFPNSCLSCFDYINSLSDITVGYLG 287

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR--------RPFVMET 228
            P     S  +  Q+I VR ERG+++L L+ + +E +P +  GD         +P +M  
Sbjct: 288 AP----YSKNRKTQWIIVRTERGEKLLDLINDEIETSPEVFFGDSHSAVQAALQPTLMPI 343

Query: 229 V---KADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNY 280
           +   K DD   M        PK++G  ++      GP G EFA+YS+D H IRN+
Sbjct: 344 LQPEKLDDRKAM--------PKWLGIYLSRKKAKSGPGGTEFAKYSIDIHAIRNF 390


>gi|89052791|ref|YP_508242.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein
           [Jannaschia sp. CCS1]
 gi|88862340|gb|ABD53217.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Jannaschia sp. CCS1]
          Length = 412

 Score =  191 bits (486), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 159/310 (51%), Gaps = 13/310 (4%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++  V AV+ V   PDDR  P PV+   P+E+   +G++   +P L  L    AAG  
Sbjct: 102 LLRSEAVTAVLAVAPHPDDRWKPLPVIVTDPDEMAKCRGMRMGYAPTLAALEPAIAAGHT 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQV ALR +E  L L++LYV+GT C DN T E    FL      PET+ + E
Sbjct: 162 RIAVIGIPCQVYALRQIEQTLGLDRLYVIGTPCSDNTTTENFHHFLSLLDDAPETISYLE 221

Query: 121 FMQDYKVHLKHLDGHIEE-VPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVP 178
           F  DYKV L+  DG     VP+  LP + L  D    +C +C DYTN LAD+ VGYMG  
Sbjct: 222 FRADYKVELRFDDGRAPRVVPFLKLPISKLDPDFFPLTCKTCVDYTNRLADITVGYMG-- 279

Query: 179 KYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMG 238
                      Q++  RN RG EML+ + + +  TP    G +R   ++   A+     G
Sbjct: 280 -------GDGDQWVITRNARGAEMLAAISDRITFTPLTDKG-KRGGAVKGFLANTERAAG 331

Query: 239 RGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPS 298
             P +  P ++  L++F    +GP+GLEFAR  ++   I   LH+ R     R    +P 
Sbjct: 332 GMPLRSMPDWLRPLVSFLQPRIGPRGLEFARARVEMKAIDTILHLRRT-HPARVKNMVPG 390

Query: 299 YAKKIVEMYN 308
           +   + E Y+
Sbjct: 391 HVWSVAEPYD 400


>gi|189346478|ref|YP_001943007.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Chlorobium limicola DSM 245]
 gi|189340625|gb|ACD90028.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chlorobium limicola DSM 245]
          Length = 381

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 169/312 (54%), Gaps = 15/312 (4%)

Query: 6   MVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFC 65
           +V+ VV +    + +    PVLA + +E+ A++G KP LSP L +L      G+K++L  
Sbjct: 73  LVDGVVTLHRHTEQQFFSVPVLACSSDEIYASRGNKPVLSPVLRSLQTAYRQGLKKILVI 132

Query: 66  GVGCQVQALRSVEH---HLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFM 122
           G  C +  LR       +L   +++ +G  CVDN  R      L+  S+ P T  H EFM
Sbjct: 133 GAACHLHMLRDFRERFPYLQEMEIFTIGIPCVDNIDRSRWTWVLERISASPATARHMEFM 192

Query: 123 QDYKVHLKHLDGHIEEVPYFCLPANDLVD--VIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           QD+++H++H DG  E++PYF LP  +L D  +   +C SCFDY N+L+D+ +GY+     
Sbjct: 193 QDFRIHIRHSDGSTEKIPYFSLP-QELSDPAIFPKACMSCFDYLNSLSDITIGYLAAE-- 249

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
             ++  Q  Q++ VR E+G+E+L LV + LE  P         F+ +T           G
Sbjct: 250 --LTPQQDRQWVLVRTEKGRELLDLVNHELERFPEWGEWKCEGFIRQTAGGIIEQMKDTG 307

Query: 241 PSQPA----PKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHM 296
            +  A    P+++G+L++  +  +GPKG+ FA YS DYH IR+Y +V R       ++ +
Sbjct: 308 KTYAAEPLIPQWIGHLLSTTMGFIGPKGIGFAHYSADYHMIRHYYYV-RYRLPDHLERLV 366

Query: 297 PSYAKKIVEMYN 308
           P++   I+E Y 
Sbjct: 367 PAHVPVILEEYG 378


>gi|110597779|ref|ZP_01386063.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340686|gb|EAT59166.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 399

 Score =  189 bits (480), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 168/315 (53%), Gaps = 15/315 (4%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L + +VE VV +    +D   P PVLA + +++L AKG  P LSP L +L    + G+KR
Sbjct: 87  LNSKLVEGVVTLHRHEEDFFHPIPVLAGSEKDILKAKGSIPVLSPVLRSLEEAHSKGLKR 146

Query: 62  LLFCGVGCQVQALRSVEHHL----NLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           LL  G  C + ALR          N+E +Y +G  CVDN   +     L+  S  P T  
Sbjct: 147 LLVIGAACHIHALRDFHRRFDYLRNME-IYTIGIPCVDNANEKKWPWILERISKSPATAR 205

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVGYMG 176
           H EFM DY+VH+KHLDGHIE++P+F LP       I P SC SCFDY N LAD+ VGY+ 
Sbjct: 206 HIEFMPDYRVHVKHLDGHIEKIPFFSLPEELTNPEIFPHSCLSCFDYLNGLADITVGYLA 265

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNA- 235
            P      +    Q++ VR E+G  + +L+ + LE  P     +   FV  + K+   + 
Sbjct: 266 APFKNRSKL----QWVLVRTEKGSVLNNLIADELETFPESGEWECFKFVAASAKSSAESM 321

Query: 236 ---KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA 292
              K     ++  P   G+LI+ F+   GP+G+ FA +S+D+H I++Y  V   +  +  
Sbjct: 322 KCQKKEFRTTRKIPVAAGHLISEFLFRTGPRGVGFAHFSVDHHLIKHYYFVKFNY-PQHL 380

Query: 293 DKHMPSYAKKIVEMY 307
           ++ +P +   I+E Y
Sbjct: 381 ERLVPPHVYTILEEY 395


>gi|37522112|ref|NP_925489.1| hypothetical protein glr2543 [Gloeobacter violaceus PCC 7421]
 gi|35213111|dbj|BAC90484.1| glr2543 [Gloeobacter violaceus PCC 7421]
          Length = 388

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 168/309 (54%), Gaps = 21/309 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L +G VEAV+  + +PD+  +  PVL R   E+    G +  L+P L+ +  V+  G++
Sbjct: 96  LLDSGKVEAVLTTRRNPDN--TGTPVLVRHAAELAHTGGSRWDLAPILDLVPEVKRQGIR 153

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GVGCQV ALR++E  L LEKLYV+G  C DN T     + +K  S  P TV   E
Sbjct: 154 RLAVVGVGCQVSALRAIEAQLGLEKLYVVGLVCTDNMTFANWQRLIKTTSRSPRTVKKLE 213

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
           FM D+++   H +G IE+V YF +P + L      +C SCFD TN LADL VGYM     
Sbjct: 214 FMADFRIWFWHENGAIEKVSYFEMPMDKLRGCFPQACLSCFDQTNGLADLSVGYMAA--- 270

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
             I      Q+  VRNE+G+ + +L+++ LE+      G+R   + + ++      +G+ 
Sbjct: 271 -DIGW----QWFLVRNEQGEALFNLLRDDLEMGRFTDRGNRSEAMKQILRY-----LGK- 319

Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRN--YLHVNRAWGKKRADKHMPS 298
           P+   P  +  L  + +   GP+GLEFAR +++    RN  YL  +R     +  K +P 
Sbjct: 320 PAITLPSLLAQLFTWQVEHFGPRGLEFARLAVENKQTRNWYYLKTHRP---DKLKKLIPR 376

Query: 299 YAKKIVEMY 307
           + + I++ Y
Sbjct: 377 HVQAILDQY 385


>gi|110681118|ref|YP_684125.1| coenzyme F420 hydrogenase, beta subunit [Roseobacter denitrificans
           OCh 114]
 gi|109457234|gb|ABG33439.1| coenzyme F420 hydrogenase, beta subunit, putative [Roseobacter
           denitrificans OCh 114]
          Length = 402

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 170/320 (53%), Gaps = 23/320 (7%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L  G V+AV+ +  D  DR  P+P L     ++  A+G++   +P L  L   +A G  
Sbjct: 91  LLTRGRVDAVLTMVPDDADRWRPKPALITEASDMARARGMRMGYAPLLALLEEAQAQGFN 150

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQ+ ALR++E  L LE+LYV+GT C DN T E   +FL      PET+ + E
Sbjct: 151 RLAVIGIPCQIYALRALEADLGLERLYVIGTPCSDNTTTENFHRFLALLDEAPETITYLE 210

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY+V L+  DG    +P+  LP +DL  D    +C +C DYTN+LAD+ VGYMG   
Sbjct: 211 FRADYQVELRFTDGRQRLIPFLSLPISDLPRDFFPLTCRTCVDYTNSLADITVGYMG--- 267

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR----RPFVMETVKADDNA 235
                  +  Q++ VRN RG EML+ + + +++    S+G R    + F+  T +A    
Sbjct: 268 ------GEGGQWLLVRNARGAEMLAGLGDRIQLQTPGSAGKRANAVKGFIANTARA---- 317

Query: 236 KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKH 295
             G  P +  P ++  ++++    +GP+GLEFAR  ++       LH+ R    K  +  
Sbjct: 318 -AGGLPLRRMPDWLRPIVSWLQPRIGPRGLEFARTRIEMKAAETILHLRREEPAKMKN-M 375

Query: 296 MPSYAKKIVEMYN---QNGQ 312
           +P +  K+   Y+   Q+G+
Sbjct: 376 IPDHVWKVAAPYDLTPQDGE 395


>gi|302383043|ref|YP_003818866.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193671|gb|ADL01243.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 415

 Score =  186 bits (473), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 110/309 (35%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  DPDD+  P PVL      +   +G++   +P L  L    A G +
Sbjct: 104 LLETGAVDAVLTMAPDPDDKWRPMPVLVTQASAMAEVRGMRMGYAPLLALLEAARAQGYR 163

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQV ALRS+E  L L+ LYV+GT C DN T E   +FL   S  P+T+ + E
Sbjct: 164 RLAVIGIPCQVYALRSLEADLGLDALYVVGTPCSDNTTTERFHEFLALLSEHPDTITYLE 223

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLV-DVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG ++ +P+  LP + L  D    +C +C DYTNALAD+ VGYM    
Sbjct: 224 FRADYHVELRFTDGRVKTIPFLSLPISQLAPDFFPLTCRTCVDYTNALADITVGYMA--- 280

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  Q  Q++ VRN+RG+E+L L+ + + ++     G R+  V   +   + A  G 
Sbjct: 281 ------GQGEQWLLVRNDRGEELLDLLGDEVVLSEPGDKGRRKVAVAGFITNVERAAGGL 334

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P +V  ++++     GP+GLEFAR  L+       +H+ R    +R    +P +
Sbjct: 335 -PLRRMPDWVRPIVSWLQPRTGPRGLEFARTRLEMKAAETVIHLRRE-EPRRMKSMIPDH 392

Query: 300 AKKIVEMYN 308
             K+VE Y 
Sbjct: 393 VWKLVEPYG 401


>gi|339502020|ref|YP_004689440.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Roseobacter
           litoralis Och 149]
 gi|338756013|gb|AEI92477.1| putative coenzyme F420 hydrogenase/dehydrogenase, subunit beta
           [Roseobacter litoralis Och 149]
          Length = 405

 Score =  186 bits (472), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 168/320 (52%), Gaps = 23/320 (7%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L  G V+AV+ +  D  D   P+P L     ++  A+G++   +P L  L   +A G K
Sbjct: 91  LLTRGRVDAVLTMVPDDADSWRPKPALITEASDMARARGMRMGYAPLLALLEEAQAQGFK 150

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQ+ ALR++E  L LE+LYV+GT C DN T E    FLK     PET+ + E
Sbjct: 151 RLAVIGIPCQIYALRALEADLGLERLYVIGTPCSDNTTTENFHTFLKLLDEAPETITYLE 210

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  D+KV L+  DG    +P+  LP +DL  D    +C +C DYTN+LAD+ VGYMG   
Sbjct: 211 FRADFKVELRFTDGRQRLIPFLSLPISDLPRDFFPLTCRTCVDYTNSLADITVGYMG--- 267

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR----RPFVMETVKADDNA 235
                  +  Q++ VRN RG EML  +   + +    S+G R    + F+  T +A    
Sbjct: 268 ------GEGDQWLLVRNARGAEMLEGLGARIHLQAPGSAGKRANAVKGFIANTARA---- 317

Query: 236 KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKH 295
             G  P +  P ++  ++++    +GP+GLEFAR  ++       LH+ R    K  +  
Sbjct: 318 -AGGLPLRRMPDWLRPIVSWLQPRIGPRGLEFARTRVEMKAAETILHLRREEPAKMKN-M 375

Query: 296 MPSYAKKIVEMYN---QNGQ 312
           +P +  K+ E Y+   Q+G+
Sbjct: 376 VPDHVWKVAEPYDLKPQDGE 395


>gi|254282622|ref|ZP_04957590.1| putative coenzyme F420 hydrogenase beta subunit [gamma
           proteobacterium NOR51-B]
 gi|219678825|gb|EED35174.1| putative coenzyme F420 hydrogenase beta subunit [gamma
           proteobacterium NOR51-B]
          Length = 412

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 167/309 (54%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+T  V  V+C+  DP+D   P+P L   P+ +   +G++   +P L  L    AAG +
Sbjct: 89  LLETEAVSGVLCIGPDPEDSWKPQPRLITEPDAMAGCRGMRMGYAPLLALLEPAIAAGHR 148

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQ+ ALR++E  L LE+LYV+GT C DN T E    FL+    +PE + + E
Sbjct: 149 RLAVIGIPCQIYALRALEEELGLERLYVIGTPCSDNTTTENFHHFLEKLDDKPEDITYLE 208

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVGYMGVPK 179
           F+ D+ V L+  DG    +P+  LP  DL     P +C +C DYTNALAD+ VGYMG   
Sbjct: 209 FLPDFHVELRFTDGRKRRIPFLMLPIADLPKDFFPLTCRTCVDYTNALADITVGYMG--- 265

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                     Q++  RN RG E+LSL+++ L + P  SSG+RR  V   ++    A  G 
Sbjct: 266 ------GSGEQWLITRNPRGVELLSLIEDELVLAPPTSSGNRRSAVAGFIENTRRA-CGG 318

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P ++  ++A  + + GPKGLEFAR  L+     + LH+ R    KR    +P Y
Sbjct: 319 LPLRRMPGWLRPIVARLMPITGPKGLEFARTRLEMKAAESVLHLRRE-APKRMRHMLPDY 377

Query: 300 AKKIVEMYN 308
              +   Y+
Sbjct: 378 IWTLTAPYD 386


>gi|84514573|ref|ZP_01001937.1| possible coenzyme F420 hydrogenase beta subunit [Loktanella
           vestfoldensis SKA53]
 gi|84511624|gb|EAQ08077.1| possible coenzyme F420 hydrogenase beta subunit [Loktanella
           vestfoldensis SKA53]
          Length = 410

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 154/288 (53%), Gaps = 15/288 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ + +DP DR  PRP +     ++  A+G++   +P L  L    AAG +
Sbjct: 94  LLETGAVDAVLTMVADPADRWRPRPAIITDAADMAEARGMRMGYAPLLALLEPARAAGHR 153

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQ+ ALR++E  L  E++YV+GT C DN T E    FL   +  P+TV + E
Sbjct: 154 RIAVIGIPCQIYALRALEAQLGFERIYVIGTPCSDNTTTENFHGFLARLTDAPDTVTYLE 213

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG    +P+  LP  DL  D    +C +C DYTN LAD+ VGYM    
Sbjct: 214 FRADYHVELRFADGSERLIPFLKLPIADLPRDFFPTTCRTCVDYTNRLADITVGYMA--- 270

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN RG+EML  +   + +    S G R   V   V   +N ++  
Sbjct: 271 ------GEGEQWLIVRNVRGQEMLDGLGAEVTLAAPGSRGKRAGAVKGFV---ENTRLAA 321

Query: 240 G--PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNR 285
           G  P +  P F+  ++ + +  +GP+GLEFAR  L+       LH+ R
Sbjct: 322 GGLPLRRMPDFMRGIMGWLMPKIGPRGLEFARARLEMKAAETILHLRR 369


>gi|384262343|ref|YP_005417530.1| coenzyme F420 hydrogenase [Rhodospirillum photometricum DSM 122]
 gi|378403444|emb|CCG08560.1| Coenzyme F420 hydrogenase [Rhodospirillum photometricum DSM 122]
          Length = 397

 Score =  183 bits (465), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 102/316 (32%), Positives = 166/316 (52%), Gaps = 12/316 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G VEAV+ + +DP DR  P P L   P ++   +G++   +P L  L    A G++
Sbjct: 91  LLESGQVEAVLAMAADPADRWRPVPTLVTDPADMKRCRGMRMGYAPLLAELEPARARGIR 150

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GV CQ+  LR +E  L  +++ V+G  C DN T E   +FL   +  PETV + E
Sbjct: 151 RLAVIGVPCQIYPLRELEESLGFDEITVIGIPCSDNTTTENFHRFLGVLTPAPETVTYLE 210

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F+ +Y V ++  DG +  +P+  LP + L  D    +C +C DYTNALADL VGYMG   
Sbjct: 211 FLANYHVEMRFTDGRVRHIPFLKLPLSTLPADFFPLTCRACVDYTNALADLTVGYMG--- 267

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN RG+ +L L+ + + ++   S+G R   V   +   + A  G 
Sbjct: 268 ------GRGEQWVLVRNARGQAVLDLLGDEVRLSAPTSAGKRFSAVKGFLANVERAAGGL 321

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P +   ++A+ +   GP+GLEFAR  ++   +   +H+ + +  KR    +P +
Sbjct: 322 -PLRSMPDWARPIVAWLMPRTGPRGLEFARTRVEMKALEAIVHLRQHY-PKRLKAMIPPH 379

Query: 300 AKKIVEMYNQNGQIDQ 315
              +V  Y      D+
Sbjct: 380 LWTLVAPYGLTPGPDE 395


>gi|304393680|ref|ZP_07375608.1| coenzyme F420 hydrogenase [Ahrensia sp. R2A130]
 gi|303294687|gb|EFL89059.1| coenzyme F420 hydrogenase [Ahrensia sp. R2A130]
          Length = 454

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G V+AV+ +    DD+  P+P L     ++  A+G++   +P L  L     AG K
Sbjct: 142 LLEQGKVDAVLAMVPSDDDKWRPKPALITDAADMTRARGMRMGYAPLLALLEPALEAGHK 201

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQ+ ALR +E  L LE+LYV+GT C DN T E    FL+     PE + + E
Sbjct: 202 RLAVIGIPCQIHALRKLEAELGLERLYVIGTPCSDNTTTENFHTFLELLDDRPERITYLE 261

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY+V L+  DG   E+P+  LP + L  D    +C +C DYTN LAD+ VGYMG   
Sbjct: 262 FRADYQVELRFDDGTKREIPFLKLPISKLPSDFFPLTCRTCVDYTNRLADITVGYMG--- 318

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
            TG       Q++ VRNERG+E+L+ + + +   P  S G R   V   +   + A  G 
Sbjct: 319 GTG------EQWLIVRNERGEELLADLDDKIITGPVASKGKRESHVRGFMANVERAAGGL 372

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P +V  ++AF +  +GPKG EFAR  ++   I   LH+ RA   K+    +P++
Sbjct: 373 -PLRAMPDWVRPIVAFMMPKIGPKGQEFARTRVEMKAIETVLHL-RAAMPKKMRSMVPAH 430

Query: 300 AKKIVEMYN 308
             K+V  Y 
Sbjct: 431 IWKLVAPYG 439


>gi|381166492|ref|ZP_09875706.1| Coenzyme F420 hydrogenase [Phaeospirillum molischianum DSM 120]
 gi|380684065|emb|CCG40518.1| Coenzyme F420 hydrogenase [Phaeospirillum molischianum DSM 120]
          Length = 411

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 165/309 (53%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G V+AV+ + +DP D   P PVL   PE +   +G++   +P L+ L      G +
Sbjct: 103 LLESGKVDAVLTMAADPQDSWRPMPVLVTRPEGMAVCRGMRMGYAPLLSGLEPALERGYR 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   GV CQ+  LR +E  L  E+LYV+G  C DN T E    FL   +  P+ V + E
Sbjct: 163 RLAVIGVPCQIHPLRVLEPDLGFEQLYVIGIPCSDNTTTEKFHDFLALLTDTPDRVTYLE 222

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V ++  DG  +E+P+  LP + L  D    +C +C DY N+L+DL VGYM    
Sbjct: 223 FRADYHVEMRFADGGKKEIPFLKLPISKLPPDFFPLTCRTCVDYVNSLSDLTVGYMA--- 279

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN +G+E+LSL+ + + +T   S+G R+  V   +K  + A  G 
Sbjct: 280 ------GRGEQWLLVRNRKGEEILSLLGDEVRLTEPTSAGKRQGAVSGFIKNTERAAGGL 333

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P +   ++A+ +  +GP+GLE AR  L+     + +H+ R    +R    +P++
Sbjct: 334 -PMRGMPDWARPIVAWLMPKIGPRGLELARARLEMKAAESVIHL-RLQQPRRMAAMIPAH 391

Query: 300 AKKIVEMYN 308
              +VE Y 
Sbjct: 392 VWTLVEPYG 400


>gi|126734589|ref|ZP_01750335.1| coenzyme F420 hydrogenase, beta subunit, putative [Roseobacter sp.
           CCS2]
 gi|126715144|gb|EBA12009.1| coenzyme F420 hydrogenase, beta subunit, putative [Roseobacter sp.
           CCS2]
          Length = 404

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/288 (34%), Positives = 156/288 (54%), Gaps = 15/288 (5%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+TG V+AV+ +  D  D+  PRP +     ++  A+G++   +P L  L    AAG +
Sbjct: 95  LLETGAVDAVLTMVPDDADKWRPRPAIITKAADMKHARGMRMGYAPLLALLEPAHAAGHR 154

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           ++   G+ CQ+ ALR++E  L  E++YV+GT C DN T E    FL   +  PETV + E
Sbjct: 155 KIAVIGIPCQIYALRALEADLGFERIYVIGTPCSDNTTTENFHSFLARLTDAPETVTYLE 214

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG    +P+  LP +DL  D    +C +C DYTN LAD+ VGYM    
Sbjct: 215 FRADYHVELRFTDGTQRLIPFLKLPLSDLPADFFPTTCRTCVDYTNRLADITVGYMA--- 271

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN+RG EML+ + + + + P  S G R   V   V   +N ++  
Sbjct: 272 ------GEGDQWLIVRNDRGAEMLASLGDEVTLAPPGSRGKRAGSVKGFV---ENTRLAA 322

Query: 240 G--PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNR 285
           G  P +  P ++  ++ + +  +GP+G+EFAR  ++       LH+ R
Sbjct: 323 GGLPLRRMPSWLRGIMGWLMPRIGPRGVEFARARVEMKAAETILHLRR 370


>gi|83592273|ref|YP_426025.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta-like protein
           [Rhodospirillum rubrum ATCC 11170]
 gi|386348985|ref|YP_006047233.1| coenzyme F420 hydrogenase [Rhodospirillum rubrum F11]
 gi|83575187|gb|ABC21738.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
           [Rhodospirillum rubrum ATCC 11170]
 gi|346717421|gb|AEO47436.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Rhodospirillum rubrum F11]
          Length = 410

 Score =  180 bits (457), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+T  V+AV+ + +DP DR  P PV+     ++   +G++   +P L+ +    AAG K
Sbjct: 100 LLETRTVDAVLAMAADPADRWKPLPVIITQAADMARCRGMRMGHAPLLSLIEPAIAAGHK 159

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL   G+ CQV ALR++E  L LE+L V+GT C DN T      FL   + +P++V + E
Sbjct: 160 RLAVIGLPCQVHALRAIEADLGLERLLVIGTPCSDNTTTPRFHDFLGLLADDPDSVTYLE 219

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  +G  + +P+  LP + L  D    +C +C DYTN LAD+ VGYM    
Sbjct: 220 FRADYHVELRFREGGRKLIPFLKLPLSKLPADFFPLTCKTCVDYTNVLADITVGYMA--- 276

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q++ VRN+RG +ML L+ + + +T   S+G RR  V   +K    A  G 
Sbjct: 277 ------GRGEQWLLVRNDRGADMLGLLGDRIRLTEPTSAGKRRGPVAGFLKNVARAAGGM 330

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            P +  P +   L A+ +  +GP+GLEFAR  ++   I   LH+ +    +R    +P++
Sbjct: 331 -PVRAMPDWARPLAAWLMPKIGPRGLEFARARVEMKAIETVLHLRKD-RPRRLRTMVPAH 388

Query: 300 AKKIVEMYN 308
              +V  Y 
Sbjct: 389 VWALVAPYG 397


>gi|119356531|ref|YP_911175.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353880|gb|ABL64751.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Chlorobium phaeobacteroides DSM 266]
          Length = 352

 Score =  180 bits (456), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 107/323 (33%), Positives = 171/323 (52%), Gaps = 29/323 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
            K  +VE VV +Q  PD     +PVLA++ +E+ + +G KP LS  L +L      G+K+
Sbjct: 40  FKEKLVEGVVSLQRTPDHHFFSQPVLAQSFDEIHSTRGNKPVLSHVLYSLQTASRQGMKK 99

Query: 62  LLFCGVGCQVQALRSVEHHLNLEK---LYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
           +L  G  C +  LR  +   +  K   +  +G  CVDN  R      LK  S  P+T  H
Sbjct: 100 ILVIGAACHLHTLRDFQERFDYFKEMEILTIGIPCVDNIARSKWPWVLKRMSQSPDTARH 159

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVD--VIAPSCYSCFDYTNALADLVVGYMG 176
            EFMQD+++H++H  G +E++P+F LP  +L +  +  P+C SC D  N+LAD+ VGY+ 
Sbjct: 160 IEFMQDFRIHIRHDGGRVEKIPFFSLP-EELANPGIFPPACMSCVDDLNSLADITVGYLE 218

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFV-------METV 229
                 +   Q+ Q++ VR E GK++  L++  L+      + + R FV       +E++
Sbjct: 219 ----AKLLPDQNRQWVLVRTETGKKLPKLIEAELDRFEEFGNRECRSFVQSSSKRIIESM 274

Query: 230 KADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGK 289
           K  D     R   +  P + G+ +A    ++GPKG  FARYS+D+H IR+Y +V     K
Sbjct: 275 KELDKEYSSR---RKIPVWFGHTLAGVFGMIGPKGKGFARYSVDFHLIRHYYYV-----K 326

Query: 290 KRADKHM----PSYAKKIVEMYN 308
            R  +H+    P + + I+E Y 
Sbjct: 327 FRYPEHLETLVPRHVRVILEEYR 349


>gi|374618889|ref|ZP_09691423.1| coenzyme F420-reducing hydrogenase, beta subunit [gamma
           proteobacterium HIMB55]
 gi|374302116|gb|EHQ56300.1| coenzyme F420-reducing hydrogenase, beta subunit [gamma
           proteobacterium HIMB55]
          Length = 401

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 165/320 (51%), Gaps = 20/320 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L +G V AV+CV  D +D   P P L    +++ + +G++   +P L  L    A G K
Sbjct: 96  LLASGDVSAVLCVGPDANDPWKPVPRLITDAQDMASCRGMRMGYAPLLELLEPAIADGHK 155

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           R+   G+ CQ+ ALRS+E  L LE L V+GT C DN T E   +FL      PE + + E
Sbjct: 156 RIAVIGIPCQIYALRSLEKELGLEHLVVIGTPCSDNTTTENFHEFLSLLDRNPERINYLE 215

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVGYMGVPK 179
           FM D+ V L+   G    +P+  LP  DL D   P +C +C DY N L+D+ VGYMG   
Sbjct: 216 FMPDFHVELRFDTGKKRRIPFLQLPIADLRDDFFPLTCRTCVDYVNTLSDITVGYMG--- 272

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR----RPFVMETVKADDNA 235
                  +  Q++ VRN++G++ L+ +++ L +    +SG R    R F+  T +A    
Sbjct: 273 ------GRGDQWLLVRNQKGEKALNAIRSELTLKAPSTSGKRHAAVRGFIENTRRA---- 322

Query: 236 KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKH 295
             G  P +  P+++  ++   + L GPKGLEFAR  L+     + LH+ R    KR    
Sbjct: 323 -TGGLPLRRMPQWLRPIVGKIMPLTGPKGLEFARTRLEMKAAESILHLRRT-APKRLRTM 380

Query: 296 MPSYAKKIVEMYNQNGQIDQ 315
           +P +  K+ E Y      D+
Sbjct: 381 VPPHVWKLAEPYGLTPSEDE 400


>gi|350553887|ref|ZP_08923041.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thiorhodospira sibirica ATCC 700588]
 gi|349789527|gb|EGZ43476.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thiorhodospira sibirica ATCC 700588]
          Length = 429

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/312 (34%), Positives = 154/312 (49%), Gaps = 20/312 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+T  V+AV+ V  DP D   P PVL   P  +   +G++   +P L  L    A G  
Sbjct: 118 LLETQAVDAVLTVAPDPQDSWRPVPVLVTDPAALRECRGMRMGYAPLLALLEPALAQGYT 177

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL    V CQV ALR +E  L  E+L V+G  C DN T      FL      PE + + E
Sbjct: 178 RLAVIAVPCQVHALRVLEPELGFERLEVIGIPCSDNTTTAHFHHFLSLLDPHPEQITYLE 237

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVGYMGVPK 179
           F  DY+V L+  DG    +P+  LP + L     P  C +C DYTN+LAD+ VGYMG   
Sbjct: 238 FRADYQVELRFTDGQKRTIPFLQLPLSTLSPHFFPLPCKTCVDYTNSLADITVGYMG--- 294

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDR----RPFVMETVKADDNA 235
                  +  Q++ VRN +G+ +L  V   L      S G R    R F+  T +A    
Sbjct: 295 ------GRGEQWLLVRNTKGQALLQQVDGELRKKDPSSEGKRHTAVRGFIQNTQRA---- 344

Query: 236 KMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKH 295
             G  P +  PK++  L+A+ +  +GPKGLEFAR  ++     + LH+ RA    R  + 
Sbjct: 345 -AGGLPLRSTPKWIRPLVAWLMPKIGPKGLEFARARVEMKAAESVLHLRRA-RPNRVAQM 402

Query: 296 MPSYAKKIVEMY 307
           +P +   I++ Y
Sbjct: 403 IPPHLWTILKPY 414


>gi|121998419|ref|YP_001003206.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           [Halorhodospira halophila SL1]
 gi|121589824|gb|ABM62404.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halorhodospira halophila SL1]
          Length = 419

 Score =  149 bits (377), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G V+AV+ V    +D   P+PVL   P ++   +G++   +P L  L    A G K
Sbjct: 98  LLESGRVDAVLTVTGASEDPWHPQPVLVTDPAKLSQCRGMRMGYAPLLALLEPALAQGYK 157

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           RL    + CQ   LR++E  L LE+L ++GT C DN       +FL+  +  PE V + E
Sbjct: 158 RLGVIALPCQTYPLRALEEELGLERLEIIGTPCSDNTPTAHFHRFLELLTPSPEAVTYLE 217

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDL-VDVIAPSCYSCFDYTNALADLVVGYMGVPK 179
           F  DY V L+  DG   E+P+  LP + L  D    +C +C DYTNALAD+ VGYM    
Sbjct: 218 FRADYYVELRFQDGSKREIPFLQLPISRLPADFWPLTCRTCVDYTNALADITVGYMA--- 274

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGR 239
                  +  Q+I VRNERG+ ML L+ + + +    SSG RR   ++    +     G 
Sbjct: 275 ------GRGEQWILVRNERGEAMLELLGDEVRLG-APSSGGRRDGPVQGFIDNTERAAGG 327

Query: 240 GPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSY 299
            PS+  P ++  +I   +  VGP+GLE AR  L+       +H+      +RA   +P +
Sbjct: 328 MPSRGMPNWLRPIIGRLMPFVGPRGLELARARLEMKAAETLIHLQHQ-APRRARAMVPEH 386

Query: 300 AKKIVEMYN 308
             ++VE Y 
Sbjct: 387 VYRLVEGYR 395


>gi|147799603|emb|CAN75143.1| hypothetical protein VITISV_038427 [Vitis vinifera]
          Length = 240

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 56/59 (94%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGV 59
           MLK GMVEAV+CVQSDP+DRLSPRPVLARTP+EVLAAKGVKPTLSPNLNTLALVE  GV
Sbjct: 138 MLKAGMVEAVICVQSDPEDRLSPRPVLARTPDEVLAAKGVKPTLSPNLNTLALVEIDGV 196


>gi|116753495|ref|YP_842613.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Methanosaeta
           thermophila PT]
 gi|116664946|gb|ABK13973.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosaeta thermophila PT]
          Length = 362

 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 17/185 (9%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+TG+++  V   +D + R    P +A TPEE++AA G K T++P++  + +   +G  +
Sbjct: 123 LETGVIDCAVV--TDRNSRWQTTPKVATTPEEIIAAAGTKYTIAPSIAGVQMAINSGFTK 180

Query: 62  LLFCGVGCQVQALRSVE-----HHLNLEKL-YVLGTNCVDNGTREGLDKFL--KAASSEP 113
           + F G  CQ+QALR  +     +    E++  ++G  C++N   + L   L  +  + +P
Sbjct: 181 IGFTGTPCQIQALRKAQLLDEPYQFGQERIALMIGLFCMENFDYQRLMTGLVKEKMNLQP 240

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
             V  +E +Q     +   +G  E      +P  +  +   P C  CFD+T  LAD+ VG
Sbjct: 241 TDVERFE-IQRGMFRVISKEGTKE------VPLQETDEFTWPGCGPCFDFTAELADVSVG 293

Query: 174 YMGVP 178
            +G P
Sbjct: 294 SVGSP 298


>gi|20094365|ref|NP_614212.1| coenzyme F420-reducing hydrogenase subunit beta [Methanopyrus
           kandleri AV19]
 gi|19887430|gb|AAM02142.1| Coenzyme F420-reducing hydrogenase, beta subunit [Methanopyrus
           kandleri AV19]
          Length = 305

 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 33/227 (14%)

Query: 2   LKTGMVEAVVCVQSDPDDR---LSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAA 57
           L+ G+ + V+   +DPDD      PRPV+   P+EVL A G K T  PN++ L   V + 
Sbjct: 50  LEEGLFDGVIAAVADPDDPEEPWKPRPVVITDPDEVLEAAGTKYTYCPNVSVLKEAVRSY 109

Query: 58  GVKRLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASS 111
           G +++   G  CQ++A+R  +       H+  +   ++G  C++N   EG+   ++    
Sbjct: 110 GCEKVAMVGTPCQIRAVRKAQLCPIGMRHVPDKIELLIGIICMENFPYEGMKTIIEQLCG 169

Query: 112 EPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP----SCYSCFDYTNAL 167
                +    + + K  +   DG ++ +P         +D   P     C+ C DY   L
Sbjct: 170 VWIREVTKMDIGNGKFWVYTKDGEVKSIP---------IDETHPFEGEPCHVCTDYCAEL 220

Query: 168 ADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEI 212
           +DL  G +G P   G S       + VR E+ KE+L   + + LLE+
Sbjct: 221 SDLTAGSVGSPD--GWST------VIVRTEKAKEILDDMVEQGLLEV 259


>gi|340624110|ref|YP_004742563.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis X1]
 gi|339904378|gb|AEK19820.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis X1]
          Length = 282

 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 24/211 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++ V+   ++  D     P +A TPEEVL+A G K T+SPN++ L   V    ++
Sbjct: 38  LENGLLDGVIVANTE--DGFKAAPKIATTPEEVLSAAGTKYTVSPNVSVLKDAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQV+A+R +        H + +   V+G  C++N + EG+   ++  A    
Sbjct: 96  KVGIVGTPCQVRAIRKLMKYPMGFRHTDSKIALVMGIFCMENFSYEGMKAIVEQYAGIRM 155

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
             VL  +  +  K  +    G ++ VP       D       SC+ C DYT  LAD+  G
Sbjct: 156 NDVLKTDIGKG-KFWVYSKSGDVKAVPL-----KDTHMYEQKSCHVCMDYTAELADISTG 209

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            +G P   G S       I VR  +G+E L+
Sbjct: 210 SVGSPD--GWST------IFVRTAKGEEYLN 232


>gi|45358380|ref|NP_987937.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
 gi|44921138|emb|CAF30373.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
          Length = 282

 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 24/211 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++ V+   ++  D     P +A TPEEVL+A G K T+SPN++ L   V    ++
Sbjct: 38  LENGLLDGVIVANTE--DGFKAAPKIATTPEEVLSAAGTKYTVSPNVSVLKDAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQV+A+R +        H + +   V+G  C++N   EG+   ++  A    
Sbjct: 96  KVGIVGTPCQVRAIRKLMKYPMGFRHTDSKIALVMGIFCMENFPYEGMKAIVEQYAGIRM 155

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
             VL  +  +  K  +    G ++ VP       D       SC+ C DYT  LAD+  G
Sbjct: 156 NDVLKTDIGKG-KFWVYSKSGDVKAVPL-----KDTHMYEQKSCHVCMDYTAELADISTG 209

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            +G P   G S       I VR  +G+E L+
Sbjct: 210 SVGSPD--GWST------IFVRTAKGEEYLN 232


>gi|134045687|ref|YP_001097173.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis C5]
 gi|132663312|gb|ABO34958.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanococcus
           maripaludis C5]
          Length = 282

 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 24/211 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++ V+   ++  D     P +A TPEEVL+A G K T+SPN+  L   V    ++
Sbjct: 38  LENGLLDGVIVANTE--DGFKAVPKIATTPEEVLSAAGTKYTVSPNIAVLKDAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQV+A+R +        H + +   V+G  C++N   EG+   ++  A    
Sbjct: 96  KVGIVGTPCQVRAIRKLMKYPMGFRHTDSKIALVMGIFCMENFPYEGMKAIVEQYAGIRM 155

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
             VL  +  +  K  +    G ++ VP       D       SC+ C DYT  LAD+  G
Sbjct: 156 NDVLKTDIGKG-KFWVYSKSGDVKTVPL-----KDTHMYEQKSCHVCMDYTAELADISTG 209

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            +G P   G S       I VR  +G+E L+
Sbjct: 210 SVGSPD--GWST------IFVRTAKGEEYLN 232


>gi|224102271|ref|XP_002312617.1| predicted protein [Populus trichocarpa]
 gi|222852437|gb|EEE89984.1| predicted protein [Populus trichocarpa]
          Length = 79

 Score = 70.9 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/40 (72%), Positives = 35/40 (87%)

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCY 158
           ++ ++ + VHLKHLDGHIEEVPYFCLPAN+L DVIAPS Y
Sbjct: 39  WKLLEFFVVHLKHLDGHIEEVPYFCLPANELADVIAPSWY 78


>gi|1706904|sp|Q00391.1|FRHB_METVO RecName: Full=Coenzyme F420 hydrogenase subunit beta; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit beta; Short=FRH
 gi|809731|emb|CAA43499.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
          Length = 280

 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 42/211 (19%)

Query: 11  VCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGC 69
           V V +D +D  +  P +A TPEEVL A G K T+SPN++ L   V    ++++   G  C
Sbjct: 45  VSVAADTEDGCNAAPKVATTPEEVLNAAGAKYTVSPNVSVLKDAVREYALEKVGIVGTPC 104

Query: 70  QVQALRSVEHH----LNLEKLYVLGTNCVDNGTREG------------LDKFLKAASSEP 113
           QVQA+R +  +     + +   V+G  C++N + EG            +D  LK    + 
Sbjct: 105 QVQAIRKLIKYPMGFRHTDSRIVMGIFCMENFSYEGMKAIVEEYAGIRMDDVLKTDIGKG 164

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           +  ++ ++     V LK  D H+ E                 SC+ C DYT  LAD+  G
Sbjct: 165 KFWVYSKYGDVKSVKLK--DTHMYE---------------QKSCHICTDYTAELADISTG 207

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            +G P   G S       I +R E+G+  ++
Sbjct: 208 SVGSPD--GWST------IFIRTEKGEAYIN 230


>gi|21229144|ref|NP_635066.1| coenzyme F420-reducing hydrogenase subunit beta [Methanosarcina
           mazei Go1]
 gi|20907706|gb|AAM32738.1| Coenzyme F420 hydrogenase, beta subunit [Methanosarcina mazei Go1]
          Length = 294

 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 110/224 (49%), Gaps = 27/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V  + D    PRP++A + E++L A+G K ++SP +  L     + G+ 
Sbjct: 44  LEEGIIDGTI-VAGEGDRPWEPRPIVAMSREDILKARGTKYSISPQIAWLKEATRSFGLD 102

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   GV CQ+QA+R  + + +N+  +       +G  C++N   + L   ++  A+   
Sbjct: 103 KVGVTGVCCQMQAVRKAQLYPINMRDVPGKVALTVGLFCMENFPYKSLQTIVEDHAAQSL 162

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
            +V   E  +  + VH +   G++  VP   L A    +   P C+ C DY ++LAD+  
Sbjct: 163 GSVKKMEITKGKFWVHTER--GNVSTVP---LKATHKYE--QPGCHVCLDYVSSLADIST 215

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           G +G P   G S       + +R ++G E+ S  +   + E  P
Sbjct: 216 GSVGSPD--GWST------VFIRTKKGNEVWSKAVAAGMFETKP 251


>gi|297619117|ref|YP_003707222.1| coenzyme F420 hydrogenase subunit beta [Methanococcus voltae A3]
 gi|297378094|gb|ADI36249.1| coenzyme F420 hydrogenase, subunit beta [Methanococcus voltae A3]
          Length = 282

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 34/232 (14%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L++ +++ V+   ++ +D  +  P +A TPEEVL A G K T+SPN++ L   V    ++
Sbjct: 38  LESKLLDGVIV--ANTEDGFNAAPKIATTPEEVLNAAGTKYTVSPNISVLKDAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQVQA+R +        H + +   V+G  C++N + EG+   ++  A    
Sbjct: 96  KVGIVGTPCQVQAIRKLMKYPMGFRHTDSKIALVMGIFCMENFSYEGMKAIVEEYAGIRM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
             VL  +  +  + V+ K+  G ++ V        D       SC+ C DYT  LAD+  
Sbjct: 156 NDVLKTDIGKGKFWVYSKY--GDVQSVKL-----KDTHMYEQKSCHICTDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--------LVKNLLEITPTI 216
           G +G P   G S       + VR  +G+  L+         VKN+ ++ P +
Sbjct: 209 GSVGSPD--GWST------VFVRTAKGEAYLNNMVEAGVLEVKNMDDVKPGL 252


>gi|288561317|ref|YP_003424803.1| coenzyme F420 hydrogenase beta subunit FrhB1 [Methanobrevibacter
           ruminantium M1]
 gi|288544027|gb|ADC47911.1| coenzyme F420 hydrogenase beta subunit FrhB1 [Methanobrevibacter
           ruminantium M1]
          Length = 281

 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+  ++E  + V  + +D   P P +A TPEE++AA G K T SPN   L   V   G++
Sbjct: 37  LEENIIEGAI-VAGNTEDPWKPEPTIAMTPEEIIAAAGTKYTFSPNAIRLKEAVRQYGLE 95

Query: 61  RLLFCGVGCQVQALRSVEHH-----LNLEKL-YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   G  CQ+  LR ++ +        +KL  ++G  C++N  R+ L  F++   +   
Sbjct: 96  KIGTVGTPCQIMGLRKMQSYPFATRFVADKLALIIGIFCMENFPRDSLKTFIEGKMNSSL 155

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             ++   +   K  +  ++G         LP  +        C  C DY   LAD+  G 
Sbjct: 156 EGVNKMDIGKGKFWITDVEGE------SGLPLKETHGYEQAGCNICLDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGSP 213


>gi|330508186|ref|YP_004384614.1| coenzyme F420 hydrogenase subunit beta [Methanosaeta concilii GP6]
 gi|328928994|gb|AEB68796.1| coenzyme F420 hydrogenase subunit beta [Methanosaeta concilii GP6]
          Length = 288

 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 36/193 (18%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L++GM++  +    D + R   R V   T +E+ AA G K T++ ++N+LA     G ++
Sbjct: 48  LESGMIDCAIVTDKDDEWRTVSRVVT--TADEIRAAAGTKYTINNSVNSLAEALNMGFEK 105

Query: 62  LLFCGVGCQVQALRSVE-----HHLNLEKLYVL-GTNCVDN-----------GTREGLDK 104
           + F G  CQ+Q LR V+     + +  EK+ +L G  C++N             R GLD 
Sbjct: 106 IGFVGTPCQIQGLRKVQLLEEPYQIGQEKIALLVGLFCMENFDYDLLMNGLVKGRFGLD- 164

Query: 105 FLKAASSEPETVLHYEFMQD-YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDY 163
                   P+ V  +E  +  ++V  K   G ++EV    L   D  +     C  CFD+
Sbjct: 165 --------PKNVARFEIKKGMFRVIDKQ--GKVDEVK---LEETDQYNF--KGCGPCFDF 209

Query: 164 TNALADLVVGYMG 176
            + LAD+ VG +G
Sbjct: 210 ASELADISVGSVG 222


>gi|150398835|ref|YP_001322602.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           vannielii SB]
 gi|150011538|gb|ABR53990.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus vannielii SB]
          Length = 282

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 18/186 (9%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L++G+++ V+   ++   +  P+  +  TPEEVL A G K T+SPN++ L   V    ++
Sbjct: 38  LESGLLDGVIVANTEKGFKAVPK--IVTTPEEVLNAAGTKYTISPNVSVLKDAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQVQA+R +        H + +   +LG  C++N   EG+   ++  A    
Sbjct: 96  KVGIVGTPCQVQAIRKLIKYPMGFRHTDSKIALILGIFCMENFPYEGMKAIVEQYAGIRM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
             VL  +  +  + V+ K       EV    L    + +    SC+ C DYT  LAD+  
Sbjct: 156 NDVLKTDIGKGKFWVYSKS-----GEVKTVALKDTHMYE--QKSCHVCMDYTAELADIST 208

Query: 173 GYMGVP 178
           G +G P
Sbjct: 209 GSVGSP 214


>gi|284162685|ref|YP_003401308.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Archaeoglobus profundus DSM
           5631]
 gi|284012682|gb|ADB58635.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Archaeoglobus profundus DSM 5631]
          Length = 337

 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 23/225 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G +++ V   +  D+  +P+P++A + E++LA+ G K T    L  +      G K
Sbjct: 109 LLESGAIDSAVV--TGRDESWNPKPIVAISKEDLLASTGSKYTQCLVLLGVKDAIKMGKK 166

Query: 61  RLLFCGVGCQVQALRSVE---HHLNLEKL-YVLGTNCVDNGTREGLDKFLKAASSEPETV 116
            +   G+ C V+A+R+ +   H L  EK+  VLG  C++  +R+ L   L+    + E V
Sbjct: 167 SIALVGLPCHVKAIRNAQMSGHSLGAEKVSVVLGLFCMETFSRDLLKHKLEEIGVKIEDV 226

Query: 117 LHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
             ++  +     +  + G ++ +P       +L D +  SC  C D+T   AD+  G +G
Sbjct: 227 EKFDIKKGK--LMAWVKGEVKTIPL-----KELKDAVRTSCKFCNDFTAEFADISFGSVG 279

Query: 177 VPKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITPTISSG 219
                G S       I +R++RG++++  ++ +  LE+ P    G
Sbjct: 280 SD--DGWST------IIIRSDRGEKIVKGAVDQGYLEVQPITEKG 316


>gi|307352754|ref|YP_003893805.1| coenzyme F420 hydrogenase subunit beta [Methanoplanus petrolearius
           DSM 11571]
 gi|307155987|gb|ADN35367.1| coenzyme F420 hydrogenase, subunit beta [Methanoplanus petrolearius
           DSM 11571]
          Length = 287

 Score = 67.4 bits (163), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 25/216 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V +  D+   P PV+A T  E+LAA+G K T+SPN+  +     + G+ 
Sbjct: 37  LEEGIIDGAI-VAAPGDEPWKPEPVVATTKAELLAARGTKYTISPNMMLIKEATRSYGLD 95

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQ+QALR  + + + + K+       +G  C++N    GL+  ++    ++ 
Sbjct: 96  KVGIVGTPCQMQALRKAQLYPMAMRKVPDKIALAIGIFCMENFPYMGLETIVEDHCQTKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E+ +  +  +  + V+ +   G + ++P   L A    +   P C+ C DY   LAD+  
Sbjct: 156 ESAVKMDIGKGKFSVYTER--GALSQIP---LAATHKYE--QPGCHVCLDYVANLADVST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKN 208
           G +G P   G S       + VR ++G+++ S   N
Sbjct: 209 GSVGSPD--GWST------VFVRTKKGEDVWSKAVN 236


>gi|52550138|gb|AAU83987.1| coenzyme F420-dependent oxidoreductase [uncultured archaeon
           GZfos35B7]
          Length = 360

 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 101/211 (47%), Gaps = 27/211 (12%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 77
           DD+  P+  +A   +++ A  G K TL P++  +      G   + F G+ CQ+Q LR V
Sbjct: 148 DDQWRPKAKVATNYDDLKAGAGTKYTLYPSVIGVRDAIEEGHTAIGFVGLPCQIQGLRKV 207

Query: 78  E-----HHLNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPETVLHYEFM-QDYKVHLK 130
           +     + + ++KL +L G  C++N   E LD F+    ++ E V   +   +D+ V+ K
Sbjct: 208 QMSEQPYDVGIDKLKLLIGLFCMENFREELLD-FIAEKYTKLENVSKCDIKGKDFSVYAK 266

Query: 131 HLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQ 190
                        +P  D+ D +   C  C D+T  LAD+ VG +G  +  G S      
Sbjct: 267 EKHS---------IPLVDIKDYVGDGCSICMDFTAELADISVGSVGSEE--GWST----- 310

Query: 191 YITVRNERGKEML--SLVKNLLEITPTISSG 219
            + VR+E+G+E++  +L K  +E+      G
Sbjct: 311 -VFVRSEKGEELVKGALAKGYIEVKEIEDKG 340


>gi|395644720|ref|ZP_10432580.1| coenzyme F420 hydrogenase, subunit beta [Methanofollis liminatans
           DSM 4140]
 gi|395441460|gb|EJG06217.1| coenzyme F420 hydrogenase, subunit beta [Methanofollis liminatans
           DSM 4140]
          Length = 287

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 13/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D+   P P++A T  E+LAA+G K TLSPN++ L     + G+ 
Sbjct: 37  LEEGIIDGAI-VAGPSDEPWKPEPIVATTKAELLAARGTKYTLSPNISLLKEATRSYGLD 95

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           R+   G  CQ+QA+R  + + + +  +       +G  C++N   + ++  +     E  
Sbjct: 96  RVGIVGTPCQMQAVRKAQLYPVGMRDVPDKIALAIGIFCMENFPYQSIEALV-----EDH 150

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             L  E ++   +       + E      +P         P C+ C DY + LAD+  G 
Sbjct: 151 CNLKMESVKKLDIGKGKFWAYTERGAVAQIPLKVTHKYEQPGCHVCLDYVSNLADVSTGS 210

Query: 175 MGVP 178
           +G P
Sbjct: 211 VGTP 214


>gi|73667996|ref|YP_304011.1| coenzyme F420-reducing hydrogenase subunit beta [Methanosarcina
           barkeri str. Fusaro]
 gi|85682155|sp|P80490.2|FRHB_METBF RecName: Full=Coenzyme F420 hydrogenase subunit beta; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit beta; Short=FRH
 gi|2463282|emb|CAA74093.1| F420-reducing hydrogenase isoenzyme II beta subunit [Methanosarcina
           barkeri]
 gi|72395158|gb|AAZ69431.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 291

 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 23/222 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G ++  + V  + D    P+P +A T EE+L A+G + ++SP ++ L     + G+ 
Sbjct: 41  LEEGFIDGTI-VAGEGDKPWQPKPEVAMTREEILKARGTRYSISPQISWLKEATRSFGLD 99

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   GV CQ+QA+R  + + +N+  +     + +G  C++N   + L   ++  +++  
Sbjct: 100 KVGVTGVCCQMQAVRKAQLYPINMRDVPGKVAFTVGLFCMENFPYKSLQSIVEDHANQSL 159

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +    +   K  +    G++  VP   L A    +   P C+ C DY + LAD+  G 
Sbjct: 160 GSVKKMEITKGKFWVYTERGNVATVP---LKATHKYE--QPGCHVCLDYVSNLADISTGS 214

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           +G P   G S       + +R + G E+ S  +   + E  P
Sbjct: 215 VGSPD--GWST------VFIRTKVGNEIWSKAVADGMFETKP 248


>gi|340624695|ref|YP_004743148.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis X1]
 gi|339904963|gb|AEK20405.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis X1]
          Length = 282

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 26/212 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L++G+++ V+   +D +D  +  P +A T EE+L A G K T+ PNL+ + + V   G  
Sbjct: 38  LESGLLDGVII--ADKEDGFAAAPKVATTREEILNAAGTKYTVCPNLSVVKSAVREYGCD 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           +L F G  CQV+++R          H+  +   ++G  C++N    G+   ++     + 
Sbjct: 96  KLGFVGTPCQVRSIRKAIKYPIGYRHVPDKIALIMGIFCMENFPYNGMKAIVEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           + V+  +  +  + V+ K  D          +P  D       SC+ C DYT  LAD+  
Sbjct: 156 DDVVKTDIGKGKFWVYSKWGDVKT-------IPLKDTHPYEQGSCHVCMDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           G +G P   G S       I VR  +G+E L+
Sbjct: 209 GSVGSP--DGWST------IFVRTAKGEEYLN 232


>gi|45358948|ref|NP_988505.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
 gi|45047814|emb|CAF30941.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
          Length = 282

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 26/212 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L++G+++ V+   +D +D  +  P +A T EE+L A G K T+ PNL+ + + V   G  
Sbjct: 38  LESGLLDGVII--ADKEDGFAAAPKVATTREEILNAAGTKYTVCPNLSVVKSAVREYGCD 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           +L F G  CQV+++R          H+  +   ++G  C++N    G+   ++     + 
Sbjct: 96  KLGFVGTPCQVRSIRKAIKYPVGYRHVPDKIALIMGIFCMENFPYNGMKAIVEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           + V+  +  +  + V+ K  D          +P  D       SC+ C DYT  LAD+  
Sbjct: 156 DDVVKTDIGKGKFWVYSKWGDVKT-------IPLKDTHPYEQGSCHVCMDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           G +G P   G S       I VR  +G+E L+
Sbjct: 209 GSVGSP--DGWST------IFVRTAKGEEYLN 232


>gi|126180117|ref|YP_001048082.1| coenzyme F420-reducing hydrogenase subunit beta [Methanoculleus
           marisnigri JR1]
 gi|125862911|gb|ABN58100.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanoculleus
           marisnigri JR1]
          Length = 298

 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 13/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D+   P P++  T  E+LAA G + T+SPNLN +     + G+ 
Sbjct: 41  LEEGIIDGAI-VAGPSDEPWKPEPMVVTTKAELLAAAGTRYTISPNLNLIKEATRSYGLD 99

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           R+   G  CQ+QA+R  +        ++ +    LG  C++N + + L+  ++   ++  
Sbjct: 100 RVGIVGTPCQMQAVRKAQLYPIGMRDVDDKIALALGIFCMENLSYQALEAIVEDHCNQ-- 157

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
                E ++   +       + E      +P   +   + P C  C DY   LAD+  G 
Sbjct: 158 ---KMESVKKMDIGKGKFTVYTERGAVSQMPLKLIHKYVQPGCNVCLDYVANLADISSGS 214

Query: 175 MGVP 178
           +G P
Sbjct: 215 VGSP 218


>gi|150399446|ref|YP_001323213.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           vannielii SB]
 gi|150012149|gb|ABR54601.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus vannielii SB]
          Length = 282

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 26/212 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+ G+++ V+   +D +D+ +  P +A T +EVL+A G K T  PNL+ + + V   G  
Sbjct: 38  LENGLLDGVIV--ADKEDKFTAVPKVATTKDEVLSAAGTKYTTCPNLSVIKSAVREYGCD 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++ F G  CQ+Q++R          H+  +   ++G  C++N    G+   ++       
Sbjct: 96  KIGFVGTPCQIQSIRKAIKYPIGYRHVPDKIALIMGIFCMENFPYNGMKTIVEELCGVRM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V+  +  +  + V+ K   G ++ V        D       SC+ C DYT  LADL  
Sbjct: 156 EDVVKTDIGKGKFWVYTKW--GDVKTVAL-----KDTHPYEQVSCHICMDYTAELADLST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           G +G P   G S       I VR  +G + L+
Sbjct: 209 GSVGSP--DGWST------IFVRTGKGDDYLN 232


>gi|374628811|ref|ZP_09701196.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanoplanus
           limicola DSM 2279]
 gi|373906924|gb|EHQ35028.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanoplanus
           limicola DSM 2279]
          Length = 287

 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 13/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D+   P PV+A T  E+LAA+G + T+SPN+  +     + G+ 
Sbjct: 37  LEEGIIDGAI-VAGPGDEPWKPEPVVATTRAELLAARGTRYTISPNMMLIKEATRSYGLD 95

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   G  CQ+QALR  + + + + K+       +G  C++N   +GL+  +     E  
Sbjct: 96  KVGIVGTPCQMQALRKAQLYPMAMRKVPDKIALAIGIFCMENFPYQGLEAIV-----EDH 150

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +  E      +       + E      +P         P C+ C DY   LAD+  G 
Sbjct: 151 CNVKMESADKMDIGKGKFSVYTERGAISQIPLKATHKYEQPGCHVCLDYVANLADVSTGS 210

Query: 175 MGVP 178
           +G P
Sbjct: 211 VGSP 214


>gi|159905671|ref|YP_001549333.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis C6]
 gi|159887164|gb|ABX02101.1| coenzyme F420 hydrogenase, subunit beta [Methanococcus maripaludis
           C6]
          Length = 282

 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 26/212 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L++G+++ V+   +D +D  +  P +A T EE+L A G K T+  NL+ + + V   G +
Sbjct: 38  LESGLLDGVII--ADKEDGFAAAPKVATTREEILNAAGTKYTVCSNLSVIKSAVREYGCE 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++ F G  CQVQ++R          H+  +   ++G  C++N    G+   ++     + 
Sbjct: 96  KVGFVGTPCQVQSIRKAIKYPVGYRHVPDKIALIMGIFCMENFPYNGMKAIVEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           + V+  +  +  + V+ K  D          +P  D       SC+ C DYT  LAD+  
Sbjct: 156 DDVVKTDIGKGKFWVYSKWGDVKT-------IPLKDTHPYEQISCHVCMDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           G +G P   G S       I VR  +G+E L+
Sbjct: 209 GSVGSP--DGWST------IFVRTAKGEEYLN 232


>gi|134045238|ref|YP_001096724.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis C5]
 gi|132662863|gb|ABO34509.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanococcus
           maripaludis C5]
          Length = 282

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 26/212 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L++G+++ V+   +D +D  +  P +A T EE+L+A G K T+  NL+ + + V   G  
Sbjct: 38  LESGLLDGVII--ADKEDGFAAVPKVATTREEILSAAGTKYTVCSNLSVVKSAVREYGCD 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           +L F G  CQV+++R          H+  +   ++G  C++N    G+   ++     + 
Sbjct: 96  KLGFVGTPCQVRSIRKAIKYPVGYRHVPDKIALIMGIFCMENFPYNGMKAIVEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           + V+  +  +  + V+ K   G ++ VP       D       SC+ C DYT  LAD+  
Sbjct: 156 DDVVKTDIGKGKFWVYSKW--GDVKTVPL-----KDTHPYEQGSCHVCMDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           G +G P   G S       I VR  +G+E L+
Sbjct: 209 GSVGSP--DGWST------IFVRTAKGEEYLN 232


>gi|88603574|ref|YP_503752.1| coenzyme F420-reducing hydrogenase subunit beta [Methanospirillum
           hungatei JF-1]
 gi|88189036|gb|ABD42033.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanospirillum
           hungatei JF-1]
          Length = 288

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 23/222 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    +    P+P++A TPEE+L+++G +  + PN++ L   V   G+ 
Sbjct: 38  LEEGIIDGAI-VAGQGEKPWQPKPIVATTPEEILSSRGTRYNVCPNMSVLKESVRKYGLD 96

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   G  CQ+QALR  + + + L  +       +G  C++N + + + + ++   +   
Sbjct: 97  KVGIVGTPCQIQALRKAQLYPVGLRDVCDKIALAMGIFCMENFSYQSMTQIVQDHCNVDL 156

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             L    +   K       G + ++P       +      P C+ C DY   LAD+  G 
Sbjct: 157 HSLKKTDIGKGKYWAYTNRGAVSQIPLKLTHKYE-----QPGCHVCLDYVANLADISTGS 211

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITP 214
           +G P   G S       + +RN  G+ +   ++   + E  P
Sbjct: 212 VGSPD--GWST------VFIRNNNGENIWNKAVAAGIFETKP 245


>gi|150402554|ref|YP_001329848.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           maripaludis C7]
 gi|150033584|gb|ABR65697.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus maripaludis C7]
          Length = 282

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 26/212 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L++G+++ V+   +D +D  +  P +A T EE+L+A G K T+  NL+ + + V   G +
Sbjct: 38  LESGLLDGVII--ADKEDGFAAAPKVATTREEILSAAGTKYTVCSNLSVVKSAVREYGCE 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++ F G  CQV+++R          H+  +   ++G  C++N    G+   ++     + 
Sbjct: 96  KVGFVGTPCQVRSIRKAIKYPVGYRHVPDKIALIMGIFCMENFPYNGMKAIVEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           + V+  +  +  + V+ K   G ++ VP       D       SC+ C DYT  LAD+  
Sbjct: 156 DDVVKTDIGKGKFWVYSKW--GDVKTVPL-----KDTHPYEQMSCHVCMDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           G +G P   G S       I VR  +G+E L+
Sbjct: 209 GSVGSP--DGWST------IFVRTAKGEEYLN 232


>gi|397780547|ref|YP_006545020.1| coenzyme F420 hydrogenase beta subunit [Methanoculleus bourgensis
           MS2]
 gi|396939049|emb|CCJ36304.1| coenzyme F420 hydrogenase beta subunit [Methanoculleus bourgensis
           MS2]
          Length = 295

 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 13/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D+   P P++  T  E+LAA G + T+SPNL+ +     + G+ 
Sbjct: 38  LEEGIIDGAI-VAGPGDEPWKPEPMVVTTKAELLAAAGTRYTISPNLSLIKEATRSYGLD 96

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           R+   G  CQ+QA+R  +        ++ +    LG  C++N + + L+  ++   ++  
Sbjct: 97  RVGIVGTPCQIQAVRKAQVYPIGMRDVDDKIALALGIFCMENLSYQALEAMVEDHCNQ-- 154

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
                E +    +       + E      +P   +   + P C  C DY   LAD+  G 
Sbjct: 155 ---KMESVTKMDIGKGKFTVYTERGAVAQMPLKLIHKYVQPGCNVCLDYVANLADISSGS 211

Query: 175 MGVP 178
           +G P
Sbjct: 212 VGSP 215


>gi|315427054|dbj|BAJ48671.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus
           Caldiarchaeum subterraneum]
 gi|343485722|dbj|BAJ51376.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 399

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 92/225 (40%), Gaps = 33/225 (14%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA--AGV 59
           LK  +++A     +  +  L P P L   P++VL   G + T +PNL  LAL EA   GV
Sbjct: 161 LKENVIDAAALSTTTSEQPLKPIPKLVFEPDDVLGCAGSRYTYAPNL--LALKEAFEKGV 218

Query: 60  KRLLFCGVGCQVQALRSVEHHL---------NLEKLYVLGTNCVDNGTREGLDKFLKAAS 110
            +L   GV CQ+  LR ++H +             ++ +G  C +  T  GL K+     
Sbjct: 219 DKLGVVGVPCQINGLRYLQHSVPEIRYAEWFKQHVVFSIGLFCSEVFTYTGLMKYFNEIG 278

Query: 111 SEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
             P  V          + LK+ D  ++       P   L     P+C  C DY    AD+
Sbjct: 279 VNPNDVAKINIKGKVIISLKNGDEIVK-------PLKPLHKYERPACRFCKDYAADNADI 331

Query: 171 VVGYMGVPKYTGISMTQHPQYITV-RNERGKEML--SLVKNLLEI 212
            VG           +  H   ITV R   GK +   ++ K  LEI
Sbjct: 332 SVG----------GLATHGWTITVLRTRVGKTLFEDAVSKGYLEI 366


>gi|315428121|dbj|BAJ49707.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 356

 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 92/225 (40%), Gaps = 33/225 (14%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA--AGV 59
           LK  +++A     +  +  L P P L   P++VL   G + T +PNL  LAL EA   GV
Sbjct: 118 LKENVIDAAALSTTTSEQPLKPIPKLVFEPDDVLGCAGSRYTYAPNL--LALKEAFEKGV 175

Query: 60  KRLLFCGVGCQVQALRSVEHHL---------NLEKLYVLGTNCVDNGTREGLDKFLKAAS 110
            +L   GV CQ+  LR ++H +             ++ +G  C +  T  GL K+     
Sbjct: 176 DKLGVVGVPCQINGLRYLQHSVPDIRYAEWFKQHVVFSIGLFCSEVFTYTGLMKYFNEIG 235

Query: 111 SEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
             P  V          + LK+ D  ++       P   L     P+C  C DY    AD+
Sbjct: 236 VNPNDVAKINIKGKVIISLKNGDEIVK-------PLKPLHKYERPACRFCKDYAADNADI 288

Query: 171 VVGYMGVPKYTGISMTQHPQYITV-RNERGKEML--SLVKNLLEI 212
            VG           +  H   ITV R   GK +   ++ K  LEI
Sbjct: 289 SVG----------GLATHGWTITVLRTRVGKTLFEDAVSKGYLEI 323


>gi|296109197|ref|YP_003616146.1| coenzyme F420 hydrogenase, subunit beta [methanocaldococcus
           infernus ME]
 gi|295434011|gb|ADG13182.1| coenzyme F420 hydrogenase, subunit beta [Methanocaldococcus
           infernus ME]
          Length = 282

 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 46/211 (21%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQV 71
           V +D +D   P+P +A TPEEV+ A G K ++ PN+  +       G +++   G  CQ+
Sbjct: 47  VVADKEDEFLPKPKVATTPEEVIEAAGTKYSVCPNIAEIKKAAREYGCEKIGVVGTPCQI 106

Query: 72  QALRSVEHH------LNLEKLYVLGTNCVDNGTREGL------------DKFLKAASSEP 113
           +A+R    +      +N+E  +++G  C++N    GL            +  +K    + 
Sbjct: 107 RAVRKAMKYPVGFRGVNIE--FLIGIFCMENFPYNGLRVIVEELCGVKMEDVVKLDIGKG 164

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           +  ++  + +   V LK      E  PY              SC+ C DYT  LAD+  G
Sbjct: 165 KFWVYTRWGETKTVKLK------ETHPYE-----------QSSCHVCTDYTAELADVSTG 207

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            +G P   G S       + +R  +GKE+ S
Sbjct: 208 SVGSP--DGWST------VFIRTVKGKEIFS 230


>gi|20089855|ref|NP_615930.1| coenzyme F420-reducing hydrogenase subunit beta [Methanosarcina
           acetivorans C2A]
 gi|19914804|gb|AAM04410.1| coenzyme F420 hydrogenase, subunit beta [Methanosarcina acetivorans
           C2A]
          Length = 291

 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++ V+ V  + D    PRP +A + +++L A+  K  +SP ++ +     + G+ 
Sbjct: 41  LEEGIIDGVI-VAGEGDLPWKPRPFVAMSRKDILKAQKAKYNISPQISWIKEATRSFGLD 99

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   GV CQ+QA+R  + + +N+  +     +V+G  C++N   + +   ++  +++  
Sbjct: 100 KVGVTGVCCQIQAVRKAQLYPINMRDVPGKIAFVVGLFCMENFLYDSIQAIVEDHTNQSL 159

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
           + +    +   K  +    G++   P   L A        P CY C DY + L D+  G 
Sbjct: 160 SSVKKMRIGKGKFQVYTERGNVATAP---LQATHKYG--QPGCYVCLDYVSNLGDISTGS 214

Query: 175 MGVP 178
           +G P
Sbjct: 215 VGSP 218


>gi|73669779|ref|YP_305794.1| coenzyme F420-reducing hydrogenase subunit beta [Methanosarcina
           barkeri str. Fusaro]
 gi|2463277|emb|CAA74097.1| F420-reducing hydrogenase isoenzyme I beta subunit [Methanosarcina
           barkeri]
 gi|72396941|gb|AAZ71214.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 291

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 27/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D    PRP +A + E++L A+  K  +SP ++ L     + G+ 
Sbjct: 41  LEQGIIDGAI-VAGKGDLPWKPRPFVAMSREDILKAQRAKYNISPQISWLKEATRSFGLD 99

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   GV CQ+QA+R  + + +N+  +     + +G  C+ N   + +   ++  A+   
Sbjct: 100 KVGITGVCCQMQAVRKAQLYPINMRDVPGKVAFAVGLFCMVNFPYDSIQALVEDHANQSL 159

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
            +V   EF +  + VH +   G++  VP       +      P C+ C DY + LAD+  
Sbjct: 160 SSVKKMEFGKGKFFVHTER--GNVATVPL-----KETHKYEQPGCHVCLDYVSNLADIST 212

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           G +G P   G S       + +R + G E+ S  + + L E  P
Sbjct: 213 GSVGSP--GGWST------VFIRTKVGNEIWSKAVAEGLFETKP 248


>gi|297619513|ref|YP_003707618.1| coenzyme F420 hydrogenase subunit beta [Methanococcus voltae A3]
 gi|297378490|gb|ADI36645.1| coenzyme F420 hydrogenase, subunit beta [Methanococcus voltae A3]
          Length = 282

 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 18/186 (9%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L++G+++ V+   +D  +     P +A T +EVL+A G K T SPNL+ L   V   G  
Sbjct: 38  LESGLLDGVIV--ADKGEDFCAVPKVATTVDEVLSAAGTKYTTSPNLSVLKNAVREYGCD 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++ F G  CQVQ++R +        H+  +   V+G  C++N    GL   ++     + 
Sbjct: 96  KVGFVGTPCQVQSIRKMLKYPVGYRHVPDKIALVMGIFCMENFPYNGLKTIVEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V   +  +  + V+ K  D          +   D       SC+ C DYT  LAD+  
Sbjct: 156 EDVAKTDIGKGKFWVYSKWGDVKT-------IKLKDTHPYEQQSCHVCMDYTAELADIST 208

Query: 173 GYMGVP 178
           G +G P
Sbjct: 209 GSVGSP 214


>gi|268323745|emb|CBH37333.1| conserved hypothetical protein, coenzyme F420-reducing hydrogenase
           beta subunit related [uncultured archaeon]
          Length = 360

 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 23/197 (11%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 77
           DD+  P+  +A    ++ A  G K TL P++  +      G   + F G+ CQ+Q LR V
Sbjct: 148 DDQWRPKTKVATNNADLKAGAGTKYTLYPSVIGVRDAIEEGHTAIGFVGLPCQIQGLRKV 207

Query: 78  E-----HHLNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKH 131
           +     + + ++KL +L G  C++N   E LD ++    ++ E V         K  +K 
Sbjct: 208 QMSEQPYDVGIDKLKLLIGLFCMENFREELLD-YIAEKYTQLENV--------SKCDIKG 258

Query: 132 LDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQY 191
            +  +       +P  D+ D +   C  C D+T  LAD+ VG +G  +  G S       
Sbjct: 259 KEFSVYANEKHSIPLEDIKDYVGDGCSICMDFTAELADISVGSVGSEE--GWST------ 310

Query: 192 ITVRNERGKEMLSLVKN 208
           + VR+E G+E++   ++
Sbjct: 311 VFVRSESGEELVKGARD 327


>gi|262192428|ref|ZP_06050580.1| coenzyme F420-dependent oxidoreductase [Vibrio cholerae CT 5369-93]
 gi|262031692|gb|EEY50278.1| coenzyme F420-dependent oxidoreductase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score = 60.5 bits (145), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT-LSPNLNTLALVEAAGV 59
           +L+ G+V+ V+ +++  +  L     +++T +EVL+A G + +  SP +N + +V+    
Sbjct: 109 LLEQGLVDGVIHIKASDEKPLLNVATISKTADEVLSAAGSRYSPASPLINLVQIVKGNPD 168

Query: 60  KRLLFCGVGCQVQALR---SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           ++  F G  C V ALR   SVE  +     Y+L   C    +REG++  L   + +P+ +
Sbjct: 169 QKFCFIGKPCDVTALRNLISVEPSIGKSIPYLLSFFCAGTPSREGVEAVLDRLNVKPQDI 228

Query: 117 LHYEFMQDY--KVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           + ++F  +      +      I+E+ Y     N L   I   C  C D     ADLV
Sbjct: 229 IKFDFRGNGWPGKTVATTRSSIKEMSYNDSWGNILGPTIQHRCKICADGIGENADLV 285


>gi|44708|emb|CAA43503.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
          Length = 282

 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 38/252 (15%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L++G+++ V+    D  +     P +  T +EVL+A G K T SPNL+ L + V   G  
Sbjct: 38  LESGLLDGVIV--RDKGEDFCAIPKVLTTVDEVLSAAGTKYTTSPNLSVLKSAVREYGCD 95

Query: 61  RLLFCGVGCQVQALRSV------EHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++ F G  CQVQ++R +        H+  +   ++G  C++N    GL   ++     + 
Sbjct: 96  KVGFVGTPCQVQSIRKMLKYPVGYRHVPDKIALIMGIFCMENFPYNGLKTIIEEHCGIKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V   +  +  + V+ K  D          +   D       SC+ C DYT  LAD+  
Sbjct: 156 EDVAKTDIGKGKFWVYSKWGD-------VKTIKLKDTHPYEQHSCHVCMDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLSL--------VKNLLEITPTISSGDRRPF 224
           G +G P   G S       I +R  +G+             +KN+ ++ P +   ++   
Sbjct: 209 GSVGSPD--GWST------IFIRTAKGEAFYKAMEEAGVIEIKNIDDVKPGLGLVEK--- 257

Query: 225 VMETVKADDNAK 236
            ++  K D+N K
Sbjct: 258 -LDNSKKDNNGK 268


>gi|410670515|ref|YP_006922886.1| coenzyme F420 hydrogenase, beta subunit [Methanolobus psychrophilus
           R15]
 gi|409169643|gb|AFV23518.1| coenzyme F420 hydrogenase, beta subunit [Methanolobus psychrophilus
           R15]
          Length = 386

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 16/186 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++  +      ++   P PV+A+T +EVL A G   + S  + +L      G++ 
Sbjct: 151 LEEGLIDCAIVTVKSEEEPWKPVPVIAKTYDEVLEAAGSIYSHSMTIESLMSAVKQGMRS 210

Query: 62  LLFCGVGCQVQALRSVE-------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       H      +  +G  C+D  + EG+ +F+++      
Sbjct: 211 IAFVGTSCNIDAVYKMQKSPYGFLHLFMRANILKMGLFCMDTFSYEGIKEFVQSKD---- 266

Query: 115 TVLHYEFMQDYKVHLKHLDGHI-EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
             +  E ++  K+    L+    EE+  F L   +L    + SC  C D T   +DL  G
Sbjct: 267 --MRLEDIESMKIRKGKLELQASEELKVFGL--EELDRYRSSSCKYCTDLTAESSDLSFG 322

Query: 174 YMGVPK 179
            +G PK
Sbjct: 323 GVGTPK 328


>gi|312137255|ref|YP_004004592.1| coenzyme f420-reducing hydrogenase subunit beta [Methanothermus
           fervidus DSM 2088]
 gi|311224974|gb|ADP77830.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanothermus
           fervidus DSM 2088]
          Length = 280

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 16/185 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G++E  V V    D+   P+P +A T +E+LAA G K T+ PN+  +       G++
Sbjct: 37  LEEGIIEGAV-VSKVTDEPWKPQPHIATTRDEILAAAGTKYTMCPNVWMIKEATRQYGIE 95

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKL------YVLGTNCVDNGTREGLDKFLKAASSEPE 114
           +L   GV CQ+ A+R ++ +    +        ++G  C++N     L+ F+    +   
Sbjct: 96  KLGIVGVPCQIGAVRKMQTYPFGARFVPDKIKLIVGIYCMENFPYSSLETFVSEKMN--- 152

Query: 115 TVLHYEFMQDYKVHLKHLDGH-IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
             L  + +    +       + ++E     +P  +       SC  C DYT  LAD+  G
Sbjct: 153 --LSLDIVDKMDIGKGKFWAYTVDETA--TIPLKETHGYEQSSCKVCNDYTAELADISTG 208

Query: 174 YMGVP 178
            +G P
Sbjct: 209 SVGTP 213


>gi|73667804|ref|YP_303819.1| F420H2 dehydrogenase subunit F [Methanosarcina barkeri str. Fusaro]
 gi|72394966|gb|AAZ69239.1| F420H2 dehydrogenase subunit F [Methanosarcina barkeri str. Fusaro]
          Length = 346

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           + K G ++  V +  D  ++   + VL  + E+V   +G K T  P +   AL EA    
Sbjct: 106 LFKQGKIDCAVGITRD--EKWESKVVLLTSAEDVEKVRGTKYTSDPVV--AALREAFEKY 161

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTRE-GLDKFL-KAASSEPETVL 117
            R+   GV CQ  + R +  +++ + + ++G  C+++   +  LDK + +    + E V 
Sbjct: 162 DRIAVVGVPCQAHSARLIRENVSEKIVLIIGLLCMESFHHDVMLDKIIPEIMKVKIEDVR 221

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
             EF +  K  +   DG +  VP       D+       C+ C DYT+  AD+ VG +G 
Sbjct: 222 KMEFTKG-KFWVYTSDGEVHSVPI-----KDVAKYARNPCHHCCDYTSVFADISVGSVGA 275

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
           P             + +R + G+E   +V+  +EI
Sbjct: 276 P--------DGWNSVFIRTDAGEEYFEMVREEMEI 302


>gi|124484841|ref|YP_001029457.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocorpusculum
           labreanum Z]
 gi|124362382|gb|ABN06190.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanocorpusculum labreanum Z]
          Length = 290

 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---- 57
           L+TG+++  + V     +   P P++A T EE+ A++G K ++SPN   LAL++ A    
Sbjct: 38  LETGIIDGAI-VAGPGAEPYKPEPMIATTVEELFASRGTKYSVSPN---LALIKEATRSY 93

Query: 58  GVKRLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASS 111
           G+ ++   G  CQ+QA+R  + + + L  +       LG  C++N   +GL + +     
Sbjct: 94  GLDKIGIVGTPCQIQAVRKAQLYPIGLRDVPDKIALALGIFCMENFPYQGLFQMV----- 148

Query: 112 EPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           E       + +    +       + E      +P         P C+ C DY   +AD+ 
Sbjct: 149 EDHCATKIDNVTKMDIGKGKFSVYTERGVNSQIPLKVTHKYEQPGCHVCLDYVANMADIS 208

Query: 172 VGYMGVP 178
            G +G P
Sbjct: 209 TGSVGTP 215


>gi|374635417|ref|ZP_09707016.1| coenzyme F420 hydrogenase, subunit beta [Methanotorris formicicus
           Mc-S-70]
 gi|373562290|gb|EHP88505.1| coenzyme F420 hydrogenase, subunit beta [Methanotorris formicicus
           Mc-S-70]
          Length = 282

 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 28/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+  +++ VV   +D +D     P +A TPEE+L A G K T+ PN++ L + V    ++
Sbjct: 38  LENNLLDGVVV--ADKEDGFKAIPKVATTPEEILEAGGTKYTVCPNISVLKSAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQ++A+R +        H + +   ++G  C++N    GL   ++   + + 
Sbjct: 96  KVGVVGTPCQIRAVRKLMKYPVGFRHTDSKIALLIGIFCMENFPYNGLKLIVEEHCNVKI 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V+  +  +  + V+ K       E     L      + IA  C+ C DYT  LAD+  
Sbjct: 156 EDVVKMDIGKGKFWVYTKW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           G +G P   G S       + +R  RG+E  +  +    LE+ P
Sbjct: 209 GSVGSP--DGWST------VFIRTARGEEFFNKMVEDGYLEVKP 244


>gi|21226729|ref|NP_632651.1| F420H2 dehydrogenase subunit F [Methanosarcina mazei Go1]
 gi|452209214|ref|YP_007489328.1| Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoF
           [Methanosarcina mazei Tuc01]
 gi|20905018|gb|AAM30323.1| F420H2 dehydrogenase subunit FpoF [Methanosarcina mazei Go1]
 gi|452099116|gb|AGF96056.1| Coenzyme F(420)H(2) dehydrogenase (methanophenazine) subunit FpoF
           [Methanosarcina mazei Tuc01]
          Length = 346

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 21/199 (10%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRS 76
           ++   P  VL  + E+V   +G K T  P +   AL EA     R+   GV CQ  A R 
Sbjct: 121 NENWEPEVVLLTSAEDVERTRGTKYTSDPVV--AALREAFEKYDRIAVVGVPCQAHAARL 178

Query: 77  VEHHLNLEKLYVLGTNCVDNGTRE-GLDKFL-KAASSEPETVLHYEFMQ-DYKVHLKHLD 133
           +  ++N + + ++G  C+++   +  LDK + +        ++  EF +  + V+ K  D
Sbjct: 179 IRENVNEKIVLIIGLLCMESFHHDVMLDKIIPEIMKVNVRDIVKMEFTKGKFWVYTK--D 236

Query: 134 GHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYIT 193
           G +  VP       D+       C+ C DYT+  AD+ VG +G P             + 
Sbjct: 237 GEVHSVPI-----KDIAKYARNPCHHCCDYTSVFADISVGSVGAP--------DGWNSVF 283

Query: 194 VRNERGKEMLSLVKNLLEI 212
           +R E G++   +V++ +EI
Sbjct: 284 IRTEIGEKYFDMVRDEMEI 302


>gi|282165082|ref|YP_003357467.1| coenzyme F420 hydrogenase subunit beta [Methanocella paludicola
           SANAE]
 gi|282157396|dbj|BAI62484.1| coenzyme F420 hydrogenase subunit beta [Methanocella paludicola
           SANAE]
          Length = 292

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 29/213 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L+ G+++  + V    +    P+P +A T EE++AA G K T+SP ++T+   +AA   G
Sbjct: 37  LEKGVIDGAL-VAGKSETPWMPKPTIATTKEEIIAAAGTKYTISPVVSTIK--DAAREYG 93

Query: 59  VKRLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSE 112
           ++++   G  CQ+ A++ +        H+  +    +G  C +N +  GL   ++     
Sbjct: 94  LEKIAVVGTPCQIYAVQKMRLYGVGARHIPDKVAMTVGIFCTENFSYAGLRTVIEDHCKV 153

Query: 113 P-ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           P E+V   E  +  K  +K             +P  +        C+ C D T   AD+ 
Sbjct: 154 PIESVTKMEIGKG-KFWVKG-------AKDVSIPIKETHKYEQDGCHVCSDLTAEFADIS 205

Query: 172 VGYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
            G +G P   G S T        R+ RGK++LS
Sbjct: 206 TGSIGTPD--GWSTT------FARSTRGKDLLS 230


>gi|355571436|ref|ZP_09042688.1| coenzyme F420 hydrogenase, subunit beta [Methanolinea tarda NOBI-1]
 gi|354825824|gb|EHF10046.1| coenzyme F420 hydrogenase, subunit beta [Methanolinea tarda NOBI-1]
          Length = 292

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 23/189 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D+   PRP +A T EE++ A G K  +SP ++ +     + G+ 
Sbjct: 39  LEEGIIDGAI-VAGPGDEPWRPRPFIATTVEELMTAGGTKYNISPQVSWIKEATRSYGLD 97

Query: 61  RLLFCGVGCQVQALRS----------VEHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-A 109
           ++   G  CQ+QA+R           V+  + L     +G  C++N + + + + ++  A
Sbjct: 98  KIGIVGTPCQMQAVRKGQLYPVGWRDVDDKIKL----AIGIFCMENFSYQSIRQLVEDHA 153

Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
           + + E V   E  +  K  +    G + ++P       +      P+C+ C DY   LAD
Sbjct: 154 AMKMEAVKKMEIGKG-KFWVYGQRGQVVQLPLKVTHKYE-----QPACHVCLDYVANLAD 207

Query: 170 LVVGYMGVP 178
           +  G +G P
Sbjct: 208 VSTGSVGSP 216


>gi|333911073|ref|YP_004484806.1| coenzyme F420 hydrogenase subunit beta [Methanotorris igneus Kol 5]
 gi|333751662|gb|AEF96741.1| coenzyme F420 hydrogenase, subunit beta [Methanotorris igneus Kol
           5]
          Length = 282

 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 28/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+ G+++ V+   +D        P +A TPEEVL A G K T+ PN++ L + V    ++
Sbjct: 38  LENGLLDGVIV--ADNAGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQ++A+R +        H + +    +G  C++N    GL   ++     + 
Sbjct: 96  KVGIVGTPCQIRAVRKLMKYPVGFRHTDSKIALTIGIFCMENFPYMGLKTIVEEHCGVKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V+  +  +  + V+ K       E     L      + IA  C+ C DYT  LAD+  
Sbjct: 156 EDVVKMDIGKGKFWVYTKW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           G +G P   G S       + VR  RG+E  +  +    LEI P
Sbjct: 209 GSVGSPD--GWST------VFVRTIRGEEFFNKMVEDGYLEIKP 244


>gi|386003032|ref|YP_005921331.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosaeta harundinacea 6Ac]
 gi|357211088|gb|AET65708.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosaeta harundinacea 6Ac]
          Length = 366

 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 19/184 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++  V  + D  D+    P +A T EE+ AA G K T++P++  + +    G K+
Sbjct: 123 LEAGIIDCAVVTERD--DKWRGLPKVATTAEEIAAAAGTKYTITPSVTGVQMAMDQGFKK 180

Query: 62  LLFCGVGCQVQALRSVE-----HHLNLEKLYVL-GTNCVDNGTREGLDKFLKAA--SSEP 113
           + F G  CQ+QALR V+     +    EK+ +L G  C++N   E L   L       + 
Sbjct: 181 IGFVGTPCQIQALRKVQLLEEPYQFGQEKIALLVGLFCMENFEHELLFPHLVEGKFGFKA 240

Query: 114 ETVLHYEFMQDYKVHLKHLDGH-IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V  +E     K   + L G  ++EVP   L   D  D +   C  CFD+   LAD+ V
Sbjct: 241 EEVDKFEVQ---KGMFRVLSGDMVKEVP---LEETD--DYVWKGCGPCFDFAAELADVSV 292

Query: 173 GYMG 176
           G +G
Sbjct: 293 GSVG 296


>gi|333911656|ref|YP_004485389.1| coenzyme F420 hydrogenase subunit beta [Methanotorris igneus Kol 5]
 gi|333752245|gb|AEF97324.1| coenzyme F420 hydrogenase, subunit beta [Methanotorris igneus Kol
           5]
          Length = 282

 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 28/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+ G+++ V+   +D        P +A TPEEVL A G K T+ PN++ L + V    ++
Sbjct: 38  LENGLLDGVIV--ADNAGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYALE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQ++A+R +        H + +    +G  C++N    GL   ++     + 
Sbjct: 96  KVGIVGTPCQIRAVRKLMKYPVGFRHTDSKIALTIGIFCMENFPYMGLKTIVEEHCGVKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V+  +  +  + V+ K       E     L      + IA  C+ C DYT  LAD+  
Sbjct: 156 EDVVKMDIGKGKFWVYTKW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           G +G P   G S       + VR  +G+E  +  +    LEI P
Sbjct: 209 GSVGSPD--GWST------VFVRTTKGEEFFNKMVEDGYLEIKP 244


>gi|20092529|ref|NP_618604.1| F420H2 dehydrogenase subunit F [Methanosarcina acetivorans C2A]
 gi|19917799|gb|AAM07084.1| F(420)H(2) dehydrogenase, subunit FpoF [Methanosarcina acetivorans
           C2A]
          Length = 346

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 23/216 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           + K G ++  V +  +  ++  P  VL  + E+V   +G K T  P L   AL EA    
Sbjct: 106 LFKQGKIDCAVGITRN--EKWEPEVVLLTSAEDVERTRGTKYTSDPVL--AALREAFEKY 161

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTRE-GLDKFL-KAASSEPETVL 117
            R+   GV CQ  A   +  ++N + + ++G  C+++   +  L+K + +    + E + 
Sbjct: 162 DRIAVIGVPCQAHAAHLIRENVNEKIVLIIGLLCMESFHHDVMLEKIIPEILKVKLEDIR 221

Query: 118 HYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
             EF +  + V+ K  DG +  VP       D+       C+ C DYT+  AD+ VG +G
Sbjct: 222 KMEFTKGKFWVYTK--DGEVHSVPI-----KDVAKFARNPCHHCCDYTSVFADISVGSVG 274

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
            P             + +R E G++   +V+  +EI
Sbjct: 275 AP--------DGWNSVFIRTEIGEKYFDMVREDMEI 302


>gi|147919452|ref|YP_686808.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocella
           arvoryzae MRE50]
 gi|110622204|emb|CAJ37482.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanocella
           arvoryzae MRE50]
          Length = 286

 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 25/210 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G+++  + V    D    P+PV+A T EE++AA G K T+SPN+  +   V   G+ 
Sbjct: 37  LDQGVIDGAI-VAGKSDTPWLPKPVVATTKEEIIAAAGTKYTISPNMAAIKTAVREYGLD 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEP- 113
           ++   G  CQ+ A R ++       H+  +    +G  C +N +  GL   ++     P 
Sbjct: 96  KVALVGTPCQIYAARKMQLYPFGARHVGDKIALTIGIFCTENFSYAGLKTIIEDHCKVPV 155

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           E+V         K+ +      ++      +P  +         + C D T   AD+  G
Sbjct: 156 ESV--------KKMEIGKGKFSVKAAKDVAIPIKETHKYEQDGDHVCTDLTAEFADIATG 207

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEML 203
            +G P     + T        R  +G +++
Sbjct: 208 SIGTPDGWSTTFT--------RTTKGSDLM 229


>gi|423065980|ref|ZP_17054770.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Arthrospira platensis C1]
 gi|406712479|gb|EKD07664.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Arthrospira platensis C1]
          Length = 64

 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 248 FVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYAKKIVEMY 307
           +   ++   I  +GPKGLE+AR+S+D H  RNYL+V R + +K  + H+P +AK+IV  Y
Sbjct: 2   WAAKMMGVVIERIGPKGLEYARFSIDSHYTRNYLYVKRNYPEK-LENHVPDFAKRIVAQY 60


>gi|20093305|ref|NP_619380.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans
           C2A]
 gi|19918663|gb|AAM07860.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans
           C2A]
          Length = 387

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 15/186 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L  G+++  V      ++   P P +A+T EE+L + G   + S  L  L      G+  
Sbjct: 151 LDEGLIDCAVVTTRSKEEPWKPIPKVAKTREEILESGGSIYSHSMTLEALMSAIKQGMHS 210

Query: 62  LLFCGVGCQVQALRSVE-------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       H     K+  LG  C+D  T EG+   L++     E
Sbjct: 211 IAFVGTSCNIDAVTKMQKSSYGLLHLFMRAKILKLGLFCMDTFTYEGIKAVLESYGIALE 270

Query: 115 TVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            V   +  +  +++ LK    H+ E+       +D  +  + SC  C D  +  AD+  G
Sbjct: 271 NVEAMKIRKGKFEITLKDGKEHVLEL-------SDFDEYRSSSCQFCTDLASENADISFG 323

Query: 174 YMGVPK 179
            +G P+
Sbjct: 324 GVGSPE 329


>gi|256811179|ref|YP_003128548.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocaldococcus
           fervens AG86]
 gi|256794379|gb|ACV25048.1| coenzyme F420 hydrogenase, subunit beta [Methanocaldococcus fervens
           AG86]
          Length = 282

 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 46/223 (20%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQV 71
           V +D        P +A TPEEVL A G K T+ PN++ L + V   G +++   G  CQV
Sbjct: 47  VVADNAGEFQAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQV 106

Query: 72  QALRSVE------HHLNLEKLYVLGTNCVDNGTREGL------------DKFLKAASSEP 113
           +A+R +        H+  +   V+G  C++N    GL            +  +K    + 
Sbjct: 107 RAIRKLMKYPVGFRHVPDKIALVIGIFCMENFPYNGLKLIVEEHCGVKMEDVVKMDIGKG 166

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           +  ++  + +   V LK      E  PY  +           +C+ C DYT  LAD+  G
Sbjct: 167 KFWVYTRWGETKTVKLK------ETHPYEQI-----------ACHVCTDYTAELADISTG 209

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
            +G P   G S       + +R  +G+E+ +  +    LE+ P
Sbjct: 210 SVGSPD--GWST------VFIRTAKGEEIFNKMVEDGYLEVKP 244


>gi|417822428|ref|ZP_12469027.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunit family
           protein [Vibrio cholerae HE48]
 gi|340049528|gb|EGR10443.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunit family
           protein [Vibrio cholerae HE48]
          Length = 268

 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT-LSPNLNTLALVEAAGV 59
           +L+ G+V+ V+ +++  +  L     +++T +EVL+A G + +  SP +N + +V+    
Sbjct: 109 LLEQGLVDGVIHIKASDEKPLLNVATISKTADEVLSAAGSRYSPASPLINLVQIVKGNPD 168

Query: 60  KRLLFCGVGCQVQALR---SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           ++  F G  C V ALR   SVE  +     Y+L   C    +REG++  L   + +P+ +
Sbjct: 169 QKFCFIGKPCDVTALRNLISVEPSIGKSIPYLLSFFCAGTPSREGVEAVLDRLNVKPQDI 228

Query: 117 LHYEF 121
           + ++F
Sbjct: 229 IKFDF 233


>gi|333988462|ref|YP_004521069.1| coenzyme F420 hydrogenase subunit beta [Methanobacterium sp.
           SWAN-1]
 gi|333826606|gb|AEG19268.1| coenzyme F420 hydrogenase, subunit beta [Methanobacterium sp.
           SWAN-1]
          Length = 294

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 27/194 (13%)

Query: 5   GMVEAVVCVQSDP------------DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA 52
           G+V A+ C   D             +D   P P +A + +E+LAA G K T SPN+  L 
Sbjct: 27  GIVSALFCYALDEKIIDGAVVAGPGEDFWKPEPKVAMSSDEILAAAGTKYTFSPNVWMLK 86

Query: 53  -LVEAAGVKRLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKF 105
             V   G++++    + CQ   +R ++ +        +K+ +L G  C++N   E L  F
Sbjct: 87  QAVRQYGLEKVGTVAIPCQTMGIRKMQSYPFGVRFLADKIALLTGIFCMENFPYESLKTF 146

Query: 106 L-KAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYT 164
           + + A   PE V   +  +  K  +   D  I       LP  +        C  C DY 
Sbjct: 147 ISEKAGVSPELVEKMDIGKG-KFFIHTADDVI------ALPLKETHGYEQNGCKVCLDYV 199

Query: 165 NALADLVVGYMGVP 178
             LAD+  G +G P
Sbjct: 200 AELADVSTGSVGSP 213


>gi|20093977|ref|NP_613824.1| coenzyme F420-reducing hydrogenase subunit beta [Methanopyrus
           kandleri AV19]
 gi|19886939|gb|AAM01754.1| Coenzyme F420-reducing hydrogenase, beta subunit [Methanopyrus
           kandleri AV19]
          Length = 275

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 32/246 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVK 60
           L+   VEAV+   S   +   P PV+   P+E++   G K  +SPN++  AL EA A   
Sbjct: 35  LEEDTVEAVIA--SSTVETWKPEPVIVTDPDELIETAGSKYAISPNVS--ALNEAIASYD 90

Query: 61  RLLFCGVGCQVQALRSVEHH----LNLEKLYVL--GTNCVDNGTREGLDKFLKAASSEPE 114
            +   G  CQ+ A++  + +     N+ +   L  G  C +N   E L K L+    + E
Sbjct: 91  SVALVGTPCQITAVKKSKMYPYGLANVTERVKLTVGIFCTENFQYESLLKLLEDMGVDVE 150

Query: 115 TVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            V   +    ++ V  K+ D H        +  + L D    +C  C D+T   AD+ VG
Sbjct: 151 NVERMDISHGEFIVRTKNGDVH-------SVSVSKLGDYANEACNYCTDFTAEDADISVG 203

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITPTISSGDRRPFVMETVKA 231
            +G P    +        + VR + G+++   ++  ++LE+   I  GD  P ++E +  
Sbjct: 204 SVGAPDGWNV--------VLVRTKEGEKVFRSAVDADVLEV-KDIGEGD--PNLLERLAR 252

Query: 232 DDNAKM 237
           D   ++
Sbjct: 253 DKKERI 258


>gi|336121173|ref|YP_004575948.1| coenzyme F420 hydrogenase subunit beta [Methanothermococcus
           okinawensis IH1]
 gi|336121875|ref|YP_004576650.1| coenzyme F420 hydrogenase subunit beta [Methanothermococcus
           okinawensis IH1]
 gi|334855694|gb|AEH06170.1| coenzyme F420 hydrogenase, subunit beta [Methanothermococcus
           okinawensis IH1]
 gi|334856396|gb|AEH06872.1| coenzyme F420 hydrogenase, subunit beta [Methanothermococcus
           okinawensis IH1]
          Length = 282

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 48/234 (20%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+  +++ V+   +D  +   P P +A TPEEVL A G K T+ PN++ L + +   G +
Sbjct: 38  LENNLLDGVIV--ADKGEGCKPVPKVATTPEEVLKAGGTKYTVCPNISVLKSAIREYGCE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGL------------ 102
           +L   G  CQV A R          H+  +   ++G  C++N    G+            
Sbjct: 96  KLGVVGTPCQVIATRKAMKYPVGFRHMPDKIALIMGIFCMENFPYNGMKTIIEEHCGVKI 155

Query: 103 DKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFD 162
           D   K    + +  ++ ++ +   + LK      E  PY              +C+ C D
Sbjct: 156 DDVAKLDIGKGKFWVYTKWGEAKSIKLK------ETHPYE-----------QKACHVCTD 198

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLV--KNLLEITP 214
           YT  LAD+  G +G P   G S       + +R  +G+E  + +  +  LE  P
Sbjct: 199 YTAELADISTGSVGSP--DGWSS------VFIRTSKGEEFFNKMVDEGYLETKP 244


>gi|219850772|ref|YP_002465204.1| coenzyme F420-reducing hydrogenase subunit beta [Methanosphaerula
           palustris E1-9c]
 gi|219545031|gb|ACL15481.1| coenzyme F420 hydrogenase, subunit beta [Methanosphaerula palustris
           E1-9c]
          Length = 291

 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 15/185 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D+   P PV+A T EE+LAA+G K  +SPN+  +     + G+ 
Sbjct: 41  LEEGIIDGAI-VAGPGDEPWKPVPVVATTVEELLAARGTKYNISPNMQLIKEATRSYGLD 99

Query: 61  RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQ+QALR  + + + L  +       +G  C++N   + + + ++  A+++ 
Sbjct: 100 KVGIVGTPCQIQALRKGQLYPVGLRDVPDKIALAVGIFCMENFPYQSIVQLVEDHANTKL 159

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           E V     M   K       G    V    LP           C+ C DY + LAD+  G
Sbjct: 160 ENVTK---MDIGKGKFWVYTGRGASVQ---LPLKITHKYEQAGCHVCLDYVSNLADVSTG 213

Query: 174 YMGVP 178
            +G P
Sbjct: 214 SVGTP 218


>gi|20094236|ref|NP_614083.1| bifunctional coenzyme F420-reducing hydrogenase subunit
           beta/oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887267|gb|AAM02013.1| Coenzyme F420-reducing hydrogenase, beta subunit fused to
           oxidoreductase related to nitrite reductase
           [Methanopyrus kandleri AV19]
          Length = 668

 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 35/221 (15%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+ +AVV V +       P   +   PE+V    G K T    +  LA     G++R
Sbjct: 129 LEEGLADAVVGVTAG--SAWKPCVTVVEDPEKVKDLAGSKYTRVGLVEALAEAADRGIER 186

Query: 62  LLFCGVGCQVQALRSVEHHLNLEK-------------------LYVLGTNCVDNGTREGL 102
           +L  G+ CQV  L  ++H   + K                   +  +G  C  N   EGL
Sbjct: 187 VLAIGLPCQVNGLAKIQHFEIVAKGARALRNIDGSPAEKLPEVVATIGLFCTKNFEYEGL 246

Query: 103 DKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFD 162
            K L+    + E V  ++     K+ ++   G  +E         +  + I   C  C D
Sbjct: 247 VKLLREKGVDIEDVERFDITSG-KLRVEISGGETKE-----YDVKEFEEAIPEGCRICND 300

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEML 203
           +T  LAD+ VG +G P+  G++       + +R+E G+E++
Sbjct: 301 FTARLADVSVGSVGTPE--GVTT------LLIRSETGEELV 333


>gi|261403396|ref|YP_003247620.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocaldococcus
           vulcanius M7]
 gi|261370389|gb|ACX73138.1| coenzyme F420 hydrogenase, subunit beta [Methanocaldococcus
           vulcanius M7]
          Length = 282

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 28/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+  +++ V+   +  + R  P+  +A TPEEVL A G K T+ PN++ L + V   G +
Sbjct: 38  LENNLLDGVIVADNAGEFRAIPK--VATTPEEVLEAAGTKYTVCPNVSVLKSAVREYGCE 95

Query: 61  RLLFCGVGCQVQALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEP 113
           ++   G  CQV+A+R +        H+  +   ++G  C++N    GL   ++     + 
Sbjct: 96  KIGVVGTPCQVRAVRKLMKYPIGFRHIPDKISLIIGIFCMENFPYYGLKLIVEEHCGVKM 155

Query: 114 ETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV 172
           E V+  +  +  + V+ K   G  + V    L      + IA  C+ C DYT  LAD+  
Sbjct: 156 EDVVKLDIGKGKFWVYTKW--GETKAVK---LKETHPYEQIA--CHVCTDYTAELADIST 208

Query: 173 GYMGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           G +G P   G S       + +R  +G+E+ +  +    LE+ P
Sbjct: 209 GSVGSPD--GWST------VFIRTAKGEEIFNKMVEDGYLEVKP 244


>gi|383320545|ref|YP_005381386.1| coenzyme F420 hydrogenase, subunit beta [Methanocella conradii
           HZ254]
 gi|379321915|gb|AFD00868.1| coenzyme F420 hydrogenase, subunit beta [Methanocella conradii
           HZ254]
          Length = 299

 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 21/189 (11%)

Query: 23  PRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQALRSVE--- 78
           P+P +A T EE++AA G K T++P ++ +   V   G+++L   G  CQ+ A++ +    
Sbjct: 57  PKPTIATTKEEIMAAAGTKYTINPVVSVIKDAVREQGLEKLAVVGTPCQIYAVQKMRLYP 116

Query: 79  ---HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGH 135
               H+  +    +G  C +N +  GL   ++     P   +    +   K  +K     
Sbjct: 117 VGARHIPDKIALTIGIFCTENFSYAGLRTIIEDHCKVPVDSVTKMEIGGGKFKVKAAGKE 176

Query: 136 IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVR 195
           +       +P  +        C+ C D T   AD+  G +G P+      T        R
Sbjct: 177 V------AIPIKETHKYEQEGCHVCSDLTAEFADISTGSIGTPEGWSTVFT--------R 222

Query: 196 NERGKEMLS 204
             +GK++L+
Sbjct: 223 TTKGKDLLA 231


>gi|289192423|ref|YP_003458364.1| coenzyme F420 hydrogenase, subunit beta [Methanocaldococcus sp.
           FS406-22]
 gi|288938873|gb|ADC69628.1| coenzyme F420 hydrogenase, subunit beta [Methanocaldococcus sp.
           FS406-22]
          Length = 282

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQV 71
           + +D        P +A TPEEVL A G K T+ PN++ L + V   G +++   G  CQV
Sbjct: 47  IVADNAGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQV 106

Query: 72  QALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ- 123
           +A+R +        H+  +   ++G  C++N    GL   ++     + E V+  +  + 
Sbjct: 107 RAVRKLMKYPVGFRHVPDKIALIIGIFCMENFPYNGLKLIVEEHCGVKMEDVVKMDIGKG 166

Query: 124 DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGI 183
            + V+ +       E     L      + IA  C+ C DYT  LAD+  G +G P   G 
Sbjct: 167 KFWVYTRW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADISTGSVGSP--DGW 217

Query: 184 SMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           S       + +R  +G+E+ +  +    LE+ P
Sbjct: 218 ST------VFIRTAKGEEIFNKMVEDGYLEVKP 244


>gi|408380956|ref|ZP_11178506.1| coenzyme F420-reducing hydrogenase subunit beta [Methanobacterium
           formicicum DSM 3637]
 gi|407816221|gb|EKF86783.1| coenzyme F420-reducing hydrogenase subunit beta [Methanobacterium
           formicicum DSM 3637]
          Length = 294

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G+++  V V    D    P P++A + +E+LAA G K T SPN+  L   V   G++
Sbjct: 37  LDEGLIDGAV-VAGPSDVMWKPEPMVAMSSDEILAAAGTKYTFSPNVWMLKKAVRQYGLE 95

Query: 61  RLLFCGVGCQVQALRSVEHH------LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           +L    + CQ   +R ++ +      +  +   +LG  C++N   E L  F+   +    
Sbjct: 96  KLGTVAIPCQSMGIRKMQSYPFGVKNVASKIALMLGIFCMENFPYESLRTFISEKAGVDF 155

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
            ++    +   K  ++  D  +       +P  +        C  C DY   LAD+  G 
Sbjct: 156 DLVEKMDIGKGKFWIETADQTLS------IPLKETHGYEQNGCKVCLDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGTP 213


>gi|15668202|ref|NP_246995.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2494430|sp|Q60341.1|FRHB_METJA RecName: Full=Coenzyme F420 hydrogenase subunit beta; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit beta; Short=FRH
 gi|1590834|gb|AAB98011.1| coenzyme F420-reducing hydrogenase, beta subunit (frhB)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 287

 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQV 71
           + +D        P +A TPEEVL A G K T+ PN++ L + V   G +++   G  CQV
Sbjct: 52  IVADNAGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQV 111

Query: 72  QALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ- 123
           +A+R +        H+  +   ++G  C++N    GL   ++     + E V+  +  + 
Sbjct: 112 RAVRKLMKYPVGFRHVPDKIALIIGIFCMENFPYYGLKLIVEEHCGVKMEDVVKMDIGKG 171

Query: 124 DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGI 183
            + V+ +       E     L      + IA  C+ C DYT  LAD+  G +G P   G 
Sbjct: 172 KFWVYTRW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADISTGSVGSP--DGW 222

Query: 184 SMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
           S       + +R  +G+E+ +  +    LE+ P
Sbjct: 223 ST------VFIRTAKGEEIFNKMVEDGYLEVKP 249


>gi|21227327|ref|NP_633249.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|452209810|ref|YP_007489924.1| Coenzyme F420-dependent oxidoreductase [Methanosarcina mazei Tuc01]
 gi|20905682|gb|AAM30921.1| Coenzyme F420 hydrogenase, beta subunit [Methanosarcina mazei Go1]
 gi|452099712|gb|AGF96652.1| Coenzyme F420-dependent oxidoreductase [Methanosarcina mazei Tuc01]
          Length = 387

 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 16/191 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L  G+++  V      ++   P P++A+T EE+L + G   + S  L  L      G+  
Sbjct: 151 LDEGLIDCAVVTVHSEEEPWKPVPIVAKTREEILKSSGSIYSHSMTLEALMSAVKQGMNS 210

Query: 62  LLFCGVGCQVQALRSVE-------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       H     K+  LG  C+D    EG+   L++     +
Sbjct: 211 VAFVGTSCNIDAVTKMQKSSYGFLHLFMRAKVLKLGLFCMDTFAYEGIKAVLESYGITLD 270

Query: 115 TVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            V   +  +  ++V LK    HI E+  F        +  + SC  C D T   +D+  G
Sbjct: 271 NVDAMKIRKGKFEVALKDGKEHIFELSEF-------DEYRSSSCRFCTDLTAENSDISFG 323

Query: 174 YMGVPK-YTGI 183
            +G P+ YT +
Sbjct: 324 GVGSPRGYTTV 334


>gi|410722453|ref|ZP_11361740.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanobacterium
           sp. Maddingley MBC34]
 gi|410596697|gb|EKQ51355.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanobacterium
           sp. Maddingley MBC34]
          Length = 294

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G+++  V V    D    P P++A + +E+LAA G K T SPN+  L   V   G++
Sbjct: 37  LDEGLIDGAV-VAGPSDVMWKPEPMVAMSSDEILAAAGTKYTFSPNVWMLKKAVRQYGLE 95

Query: 61  RLLFCGVGCQVQALRSVEHH------LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           +L    + CQ   +R ++ +      +  +   +LG  C++N   E L  F+   +    
Sbjct: 96  KLGTVAIPCQSMGIRKMQSYPFGVKNVADKIALMLGIFCMENFPYESLRTFISEKAGVDF 155

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
            ++    +   K  ++  D  +       +P  +        C  C DY   LAD+  G 
Sbjct: 156 DLVEKMDIGKGKFWIETADQTLS------IPLKETHGYEQNGCKVCLDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGTP 213


>gi|410671239|ref|YP_006923610.1| F420H2-dehydrogenase 40 kDa subunit [Methanolobus psychrophilus
           R15]
 gi|409170367|gb|AFV24242.1| F420H2-dehydrogenase 40 kDa subunit [Methanolobus psychrophilus
           R15]
          Length = 342

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 21/239 (8%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G V+ +V + SD  D  +   +L   PE+V    G K T    L+ L         
Sbjct: 105 LLESGEVDCIVGIASD--DGWNTELILMTKPEDVDRTTGTKYTYDSVLSALKE-PFEKYD 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGL-DKFL-KAASSEPETVLH 118
           R+   GV CQV A R +  ++N + + ++G  C+++   + + +K L +    + E V+ 
Sbjct: 162 RIAVIGVPCQVHAARLISENVNDKIVVIIGLLCMESFYHDVMKEKILPEIMGLKAEDVVK 221

Query: 119 YEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
            +F +  +  + K  + H  ++      A +        C+ C DYT+  AD+ VG +G 
Sbjct: 222 MDFGKGQFWNYTKDGEAHSVKIAQVAPHARN-------PCHHCCDYTSYFADISVGSVGT 274

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAK 236
           P             + +R + G++   ++++ +EI      G      + T+K D+N K
Sbjct: 275 P--------DGWNSVLIRTDVGEKYFDMIRDKVEIMEDPKPGLDLIKKLTTMKHDNNKK 325


>gi|84490093|ref|YP_448325.1| coenzyme F420-reducing hydrogenase subunit beta [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373412|gb|ABC57682.1| FrhB [Methanosphaera stadtmanae DSM 3091]
          Length = 298

 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 29/210 (13%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQALRS 76
           D+   P P++A T +E+L   G K T+ PNL+ +       G++++   G  CQV  LR 
Sbjct: 56  DEPWKPEPLVATTKKEILKGAGTKYTMCPNLSVIKEATREYGLEKIGTVGTPCQVMGLRK 115

Query: 77  VEHH-LNLEKL-----YVLGTNCVDNGTREGLDKFLK-AASSEPETVLHYEFMQDYKVHL 129
           ++ + L +  +       +G  C++N   E L  F+       P  V      +  K+ +
Sbjct: 116 MQTYPLGVRNVVDKIALSIGIYCMENFPYESLKTFINDKVGVTPSQVTKMNITKG-KLFI 174

Query: 130 KHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 189
            H  G  +      +P  +        C  C DY   L+DL  G +G            P
Sbjct: 175 THTGGEGK------IPLKETHGYEQAGCNYCMDYVAELSDLSCGSVGA----------KP 218

Query: 190 QYITV--RNERGKEML--SLVKNLLEITPT 215
            + T+  R ++G  ++  ++ + +LE T T
Sbjct: 219 GWSTIIKRTDKGASLIDKAIKEGVLETTET 248


>gi|298528806|ref|ZP_07016210.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512458|gb|EFI36360.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 432

 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 42/215 (19%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK--------------PTLSP 46
           ++++G ++  V   S      +  P+LART E++L   G                 T SP
Sbjct: 114 LMESGRIDGAVV--SRNKGLFNREPMLARTSEQILECCGSYFDVSHGTYHYGTQYSTYSP 171

Query: 47  NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH--LNLEKLY-VLGTNCV-----DNGT 98
           ++  L  V+  G + + F G  CQV+ LR ++    +  + +Y VLG  C      D+ +
Sbjct: 172 SVQALGDVKTQGFRSIAFVGTPCQVRTLRKMQALGVVPADAIYCVLGLFCTGNFEFDDNS 231

Query: 99  REGLDKFLKAASSEPETV----LHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIA 154
           R+ L+K  + +  + + +      Y +MQD  +H               LP ++L  +  
Sbjct: 232 RKRLEKTGEFSWKDVQKINVTDKVYIYMQDGSIHA--------------LPLDELDFIKR 277

Query: 155 PSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 189
            +C  C DY+  LADL  G +G        +T+ P
Sbjct: 278 RACNYCHDYSAELADLSFGGVGSDDGWTTVLTRSP 312


>gi|7649026|gb|AAF65743.1|AF228526_1 F420H2 dehydrogenase subunit FpoF [Methanosarcina mazei Go1]
          Length = 346

 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 21/199 (10%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRS 76
           ++   P  VL  + E+V   +G K T  P +   AL EA     R+   GV CQ  A R 
Sbjct: 121 NENWEPEVVLLTSAEDVERTRGTKYTSDPVV--AALREAFEKYDRIAVVGVPCQAHAARL 178

Query: 77  VEHHLNLEKLYVLGTNCVDNGTRE-GLDKFL-KAASSEPETVLHYEFMQ-DYKVHLKHLD 133
           +  ++N + + ++G  C+++   +  LDK + +        ++  EF +  + V+ K  D
Sbjct: 179 IRENVNEKIVLIIGLLCMESFHHDVMLDKIIPEIMKVNVRDIVKMEFTKGKFWVYTK--D 236

Query: 134 GHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYIT 193
           G +  VP       D+        + C DYT+  AD+ VG +G P             + 
Sbjct: 237 GEVHSVPI-----KDIAKYERNPSHHCCDYTSVFADISVGSVGAP--------DGWNSVF 283

Query: 194 VRNERGKEMLSLVKNLLEI 212
           +R E G++   +V++ +EI
Sbjct: 284 IRTEIGEKYFDMVRDEMEI 302


>gi|325957979|ref|YP_004289445.1| coenzyme F420 hydrogenase subunit beta [Methanobacterium sp. AL-21]
 gi|325329411|gb|ADZ08473.1| coenzyme F420 hydrogenase, subunit beta [Methanobacterium sp.
           AL-21]
          Length = 294

 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 17/169 (10%)

Query: 19  DRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQVQALRSV 77
           D   P P++A+T +E+LAA G K T SPN+  L   V   G++++    + CQ   +R +
Sbjct: 53  DFWKPEPMVAQTADEILAAAGTKYTFSPNVLMLKKAVRQYGLEKVGTVAIPCQAMGIRKM 112

Query: 78  EHH-----LNLEKLYVL-GTNCVDNGTREGLDKFL-KAASSEPETVLHYEFMQ-DYKVHL 129
           + +        +K+ +L G  C++N     L  F+ +     PE V   +  +  + VH 
Sbjct: 113 QSYPFGVRFLADKIALLTGIFCMENFPFASLQTFISEKMGVSPELVEKMDIGKGKFWVHT 172

Query: 130 KHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 178
                         +P  +        C  C DY   LAD+  G +G P
Sbjct: 173 AD--------DVLSIPLKETHGYEQSGCKVCLDYVAELADVSTGSVGSP 213


>gi|73668420|ref|YP_304435.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina barkeri str.
           Fusaro]
 gi|72395582|gb|AAZ69855.1| coenzyme F420 hydrogenase, beta subunit [Methanosarcina barkeri
           str. Fusaro]
          Length = 387

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 15/204 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L  G++++ V      ++   P PV+A+  EE+L + G   + S  L  L      G+  
Sbjct: 151 LDEGLIDSAVVTTRSKEEPWKPVPVVAKKREEILESSGSIYSHSMTLEALMSAIKQGMNS 210

Query: 62  LLFCGVGCQVQALRSVE-------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       H     K+  LG  C+D  + EG+   L +     E
Sbjct: 211 VAFVGTSCNIDAVTKMQKSSYGFLHLFMRAKVLKLGLFCMDTFSYEGIKAVLGSYGITLE 270

Query: 115 TVLHYEFMQD-YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            V   +  +  ++V LK     I ++  F        +  + SC  C D T   +D+  G
Sbjct: 271 NVDAMKIRKGRFEVTLKDGKQQIFDLSEF-------DEYRSSSCRFCTDLTAENSDISFG 323

Query: 174 YMGVPKYTGISMTQHPQYITVRNE 197
            +G P+     +T+      + NE
Sbjct: 324 GVGSPRGWTTVLTRSALGYEIFNE 347


>gi|21227071|ref|NP_632993.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|452209557|ref|YP_007489671.1| Coenzyme F420-dependent oxidoreductase [Methanosarcina mazei Tuc01]
 gi|20905396|gb|AAM30665.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1]
 gi|452099459|gb|AGF96399.1| Coenzyme F420-dependent oxidoreductase [Methanosarcina mazei Tuc01]
          Length = 344

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L TG+V+AVV V  DP   L PR ++    E ++   G +      L + +L EA   K+
Sbjct: 115 LDTGLVDAVVTVTEDPW-TLKPRSMVITRSEALIGQAGSRYNWWVPLVS-SLKEAVINKK 172

Query: 62  ---LLFCGVGCQVQALRSV---EHHL----NLEKLYVLGTNCVDNGTREGL--DKFLKAA 109
              +   GV C +QA+R +   +H L         +VLG  C +N   E L   K     
Sbjct: 173 YRNIAVVGVPCVIQAVRKMLESDHQLVSPYKKSIRFVLGLFCTENFDYEKLVAGKLKSEY 232

Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
           + EP  V   +     ++ L   DG       + +P  +L D + P C  C D+T   +D
Sbjct: 233 ALEPMKVCRIDVKGKLEITLN--DGT-----QYVIPLTELEDTVRPGCSVCTDFTALKSD 285

Query: 170 LVVGYMGVP 178
           +  G +G P
Sbjct: 286 ISAGSVGSP 294


>gi|304314490|ref|YP_003849637.1| F420-dependent sulfite reductase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587949|gb|ADL58324.1| F420-dependent sulfite reductase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 690

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 40/225 (17%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V    D+   P  +L +T E++    G K ++S  L  L      G++
Sbjct: 166 LLEKGEIDGAIVVG---DEHWKPVSLLVQTAEDLEETSGSKYSIS-TLEALRTAGELGIE 221

Query: 61  RLLFCGVGCQVQALRSVE-------HHLNL----------EKLYVLGTNCVDNGTREGLD 103
           R+   G+ CQ+  LR ++       H L L          E  Y++G  C +      L 
Sbjct: 222 RVAVVGLPCQINGLRKLQYFPYLAKHDLELGRKGKPVKLPEIRYLIGLFCTEKFEYGDLR 281

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
           K L+      E  +  E ++ + +    L+  + +         +L+D+ I+  C SC D
Sbjct: 282 KVLR------ENGIRMEDVEKFNIRRGKLEVDLGDR----RETLNLMDIRISEGCRSCRD 331

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK 207
           +   LAD+ VG  G P+  G S       I VR  RG E+   V+
Sbjct: 332 FDAHLADVSVGSAGSPE--GYST------IIVRTRRGAEIAGAVE 368


>gi|308272003|emb|CBX28611.1| hypothetical protein N47_G39350 [uncultured Desulfobacterium sp.]
          Length = 374

 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 30/195 (15%)

Query: 24  RPVLARTPEEVLAAKG--------------VKPTLSPNLNTLALVEAAGVKRLLFCGVGC 69
           RP LA + EE++ + G              +  T SP+   +  + +  + R+ F G  C
Sbjct: 137 RPWLAHSKEEIIGSAGFHFDASHGLQLFSELYSTYSPSFVKVGYISSKRLDRVAFVGTPC 196

Query: 70  QVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDY 125
           QV  +R ++  L +E       + G  C  N        F      + E + ++ + +  
Sbjct: 197 QVNTIRRIQA-LGIEPANSITIIFGLFCTGNFI------FGPEQQHQLEKIGNFRWDEVN 249

Query: 126 KVHLK-HLDGHI--EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTG 182
           K+++K HL  H+  +E+ +  L   D +   A  C+ CFDY+   ADL  G +G P+   
Sbjct: 250 KINVKEHLMIHLRNKEIRHISLDQLDFMKRHA--CHYCFDYSAEFADLSFGGLGSPEGWT 307

Query: 183 ISMTQHPQYITVRNE 197
             +T+  Q   V N+
Sbjct: 308 TVITRSLQGQAVLND 322


>gi|148643181|ref|YP_001273694.1| coenzyme F420-reducing hydrogenase subunit beta [Methanobrevibacter
           smithii ATCC 35061]
 gi|148552198|gb|ABQ87326.1| coenzyme F420-reducing hydrogenase, beta subunit, FrhB
           [Methanobrevibacter smithii ATCC 35061]
          Length = 285

 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 30/226 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L+  ++E  V V  DP D   P P +A T +E+L+A G K ++SPN+    + EAA   G
Sbjct: 37  LENNIIEGAV-VAGDPGDDWVPIPEIATTADEILSAAGTKYSMSPNV--WGIKEAARQHG 93

Query: 59  VKRLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKA-ASS 111
           ++ +      CQ+Q +R ++ +        +K+ +L G  C++N     LD F K     
Sbjct: 94  IESIGTVVTPCQMQGIRKMQAYPFSTRFIADKIKLLVGIFCMENFPMASLDTFTKGLMDV 153

Query: 112 EPETVLHYEFMQD-YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
           + + V   +  +  + ++ +  D   + +P       +        C  C DY    AD+
Sbjct: 154 DLDKVTKMDIGKGKFWIYTEGSD-EPQGIPIKATHGYE-----QAGCNICNDYVCEFADI 207

Query: 171 VVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLV--KNLLEITP 214
             G +G P      +T        R + G ++ S      L+E  P
Sbjct: 208 STGSVGAPDGWSTVLT--------RTDAGADIFSAAVDAGLIETKP 245


>gi|219853262|ref|YP_002467694.1| coenzyme F420 hydrogenase [Methanosphaerula palustris E1-9c]
 gi|219547521|gb|ACL17971.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 341

 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 27/193 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGV-- 59
           L+ G+++AVV V +D    L P   +  + E ++   G +      L  LA ++ A V  
Sbjct: 111 LEEGLIDAVVTVTADQWTML-PHSTVITSSEALITGAGSRYNWWVPL--LAALKEAVVTR 167

Query: 60  --KRLLFCGVGCQVQA---LRSVEHHLNLEKLY------VLGTNCVDNGTREGL--DKFL 106
             KR+   GV C VQA   +RS EH  +L + Y      ++G  C ++   + L   K +
Sbjct: 168 KYKRIAIVGVPCVVQAVEQMRSSEH--DLLRPYARAIRLLIGLFCTESFDYQRLMEGKLV 225

Query: 107 KAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNA 166
              S EP  +   +     +V LK  DG+        +P  DL D + P C++C D T  
Sbjct: 226 HEFSIEPWQIRKMDVKGVLEVLLK--DGN-----AITIPLKDLADCVRPGCHTCNDLTGV 278

Query: 167 LADLVVGYMGVPK 179
            ADL  G +G P+
Sbjct: 279 DADLSAGSVGSPE 291


>gi|432332065|ref|YP_007250208.1| coenzyme F420 hydrogenase, subunit beta [Methanoregula formicicum
           SMSP]
 gi|432138774|gb|AGB03701.1| coenzyme F420 hydrogenase, subunit beta [Methanoregula formicicum
           SMSP]
          Length = 308

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 14/164 (8%)

Query: 23  PRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGCQVQALRSVEHH- 80
           P P +  T  E+LAA G K  +SPN+  L     A G+ ++   G  CQ+QA+R  + + 
Sbjct: 78  PIPAIVNTKAELLAAAGTKYNISPNVALLKEATRAFGLDKIGIVGTPCQMQAVRKAQLYP 137

Query: 81  -----LNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDG 134
                +       +G  C++N   + + + ++  A+ + E+V   E  +  K  +    G
Sbjct: 138 IGFRDVGASIALAVGIFCMENFPYQSILQLVEDHAAMKLESVKKMEIGKG-KFWVYGKRG 196

Query: 135 HIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 178
            + ++P       +      P C+ C DY   L D+  G +G P
Sbjct: 197 QVVQLPLKVTHKYE-----QPGCHVCLDYVANLGDISTGSVGSP 235


>gi|222445412|ref|ZP_03607927.1| hypothetical protein METSMIALI_01048 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434977|gb|EEE42142.1| coenzyme F420 hydrogenase, subunit beta [Methanobrevibacter smithii
           DSM 2375]
          Length = 285

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 30/226 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L+  ++E  V V  DP D   P P +A T +E+L+A G K ++SPN+    + EAA   G
Sbjct: 37  LENNIIEGAV-VAGDPGDDWVPIPEIATTADEILSAAGTKYSMSPNV--WGIKEAARQHG 93

Query: 59  VKRLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKA-ASS 111
           ++ +      CQ+Q +R ++ +        +K+ +L G  C++N     LD F K     
Sbjct: 94  IESIGTVVTPCQMQGIRKMQAYPFSTRFIADKIKLLVGIFCMENFPMASLDTFTKGLMDV 153

Query: 112 EPETVLHYEFMQD-YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
           + + V   +  +  + ++ +  D   + +P       +        C  C DY    AD+
Sbjct: 154 DLDKVTKMDIGKGKFWIYTEGSD-EPQGIPIKATHGYE-----QAGCNICNDYVCEFADI 207

Query: 171 VVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLV--KNLLEITP 214
             G +G P      +T        R + G ++ S      L+E  P
Sbjct: 208 STGSVGAPDGWSTVLT--------RTDAGVDIFSAAVDAGLIETKP 245


>gi|261350026|ref|ZP_05975443.1| coenzyme F420 hydrogenase, subunit beta [Methanobrevibacter smithii
           DSM 2374]
 gi|288860812|gb|EFC93110.1| coenzyme F420 hydrogenase, subunit beta [Methanobrevibacter smithii
           DSM 2374]
          Length = 285

 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 30/226 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L+  ++E  V V  DP D   P P +A T +E+L+A G K ++SPN+    + EAA   G
Sbjct: 37  LENNIIEGAV-VAGDPGDDWVPIPEIATTADEILSAAGTKYSMSPNV--WGIKEAARQHG 93

Query: 59  VKRLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKA-ASS 111
           ++ +      CQ+Q +R ++ +        +K+ +L G  C++N     LD F K     
Sbjct: 94  IESIGTVVTPCQMQGIRKMQAYPFSTRFIADKIKLLVGIFCMENFPMASLDTFTKGLMDV 153

Query: 112 EPETVLHYEFMQD-YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
           + + V   +  +  + ++ +  D   + +P       +        C  C DY    AD+
Sbjct: 154 DLDKVTKMDIGKGKFWIYTEGSD-EPQGIPIKATHGYE-----QAGCNICNDYVCEFADI 207

Query: 171 VVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLV--KNLLEITP 214
             G +G P      +T        R + G ++ S      L+E  P
Sbjct: 208 STGSVGAPDGWSTVLT--------RTDAGVDIFSAAVDAGLIETKP 245


>gi|154150019|ref|YP_001403637.1| coenzyme F420-reducing hydrogenase subunit beta [Methanoregula
           boonei 6A8]
 gi|153998571|gb|ABS54994.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanoregula boonei 6A8]
          Length = 308

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 18/179 (10%)

Query: 12  CVQSDPD----DRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCG 66
           C+Q   +    +   P P +  T  E+LAA G K  +SPN+  L     + G+ ++   G
Sbjct: 63  CIQDSSNLDMIEPWRPIPAIVNTKAELLAAAGTKYNISPNIALLKEATRSFGLDKIGIVG 122

Query: 67  VGCQVQALRSVEHH------LNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHY 119
             CQ+QA+R  + +      +       +G  C++N   + + + ++  A+ + E+V   
Sbjct: 123 TPCQMQAVRKAQLYPVGMRDVGASIALAVGIFCMENFPYQSILQLVEDHAAMKLESVKKM 182

Query: 120 EFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 178
           E  +  K  +    G + ++P       +      P C+ C DY   L D+  G +G P
Sbjct: 183 EIGKG-KFWVYGKRGQVVQLPLKVTHKYE-----QPGCHVCLDYVANLGDISTGSVGSP 235


>gi|332880884|ref|ZP_08448554.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|357044756|ref|ZP_09106403.1| 4Fe-4S binding domain protein [Paraprevotella clara YIT 11840]
 gi|332681058|gb|EGJ53985.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|355532201|gb|EHH01587.1| 4Fe-4S binding domain protein [Paraprevotella clara YIT 11840]
          Length = 419

 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 7/188 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+  +++  V V    ++    +P +A+  EE+  +K  K  ++     +  +    +K
Sbjct: 117 LLEKKLIDGAVVVGYSEENPFEAKPFIAKNAEEIHDSKSSKYVVTSMDKVVTEILNTDLK 176

Query: 61  RLLFCGVGCQVQALRSV--EHHLNLEKLYVLGT-NCVDNGTREGLDKFLKAASSEPETVL 117
           RL   G+ C +Q +R +  ++ L  +K+ V     C  N TR  LD +L         V 
Sbjct: 177 RLAMVGLPCHIQGMRKLAEKNRLIHDKIAVFAAIYCSVNKTRHSLDYYLYRYKVNKNDVG 236

Query: 118 HYEFMQDYKV-HLKHLDGH---IEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            + F  D  +  +K  D +   I++VPY               C  C D    LAD+  G
Sbjct: 237 KFSFRDDGCMGFMKFTDKNGNTIKKVPYMSYWFGTHSFFANSRCSLCIDQLGELADISFG 296

Query: 174 YMGVPKYT 181
            + +  Y+
Sbjct: 297 DIHIKPYS 304


>gi|149718|gb|AAA72190.1| F420 hydrogenase beta-subunit (frhB) [Methanothermobacter
           thermautotrophicus]
          Length = 281

 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G++E  V V     +   P P++A T +E+ AA G K T SPN+  L   V   G++
Sbjct: 37  LDEGIIEGAV-VAGPGKEFWKPEPMVAMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIE 95

Query: 61  RLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPE 114
           +L    + CQ   +R  + +        +K+ +L G  C++N     L  F+        
Sbjct: 96  KLGTVAIPCQTMGIRKAQTYPFGVRFVADKIKLLVGIYCMENFPYTSLQTFICEKLG--- 152

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             L+ E ++   +       + ++  Y  LP  +        C  C DY   LAD+  G 
Sbjct: 153 --LNMELVEKMDIGKGKFWVYTQDDVY-TLPLKETHGYEQAGCKICKDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGSP 213


>gi|15679299|ref|NP_276416.1| coenzyme F420-reducing hydrogenase subunit beta
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|3334465|sp|P19499.4|FRHB_METTH RecName: Full=Coenzyme F420 hydrogenase subunit beta; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit beta; Short=FRH
 gi|2622404|gb|AAB85777.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 281

 Score = 50.8 bits (120), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G++E  V V     +   P P++A T +E+ AA G K T SPN+  L   V   G++
Sbjct: 37  LDEGIIEGAV-VAGPGKEFWKPEPMVAMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIE 95

Query: 61  RLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPE 114
           +L    + CQ   +R  + +        +K+ +L G  C++N     L  F+        
Sbjct: 96  KLGTVAIPCQTMGIRKAQTYPFGVRFVADKIKLLVGIYCMENFPYTSLQTFICEKLG--- 152

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             L+ E ++   +       + ++  Y  LP  +        C  C DY   LAD+  G 
Sbjct: 153 --LNMELVEKMDIGKGKFWVYTQDDVY-TLPLKETHGYEQAGCKICKDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGSP 213


>gi|357037825|ref|ZP_09099624.1| Coenzyme F420 hydrogenase [Desulfotomaculum gibsoniae DSM 7213]
 gi|355360381|gb|EHG08139.1| Coenzyme F420 hydrogenase [Desulfotomaculum gibsoniae DSM 7213]
          Length = 366

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 30/221 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G++   V    + D+   P P LART  EV A  G K    P L  L      G+  
Sbjct: 111 LRQGLISGAVLTGGEADN---PHPALARTAGEVYACAGSKYVGVPTLAELNRALRDGLTG 167

Query: 62  LLFCGVGCQVQALRSVEH------HLNLEKL--YVLGTNCVDNGTREGLDKFLKAASSEP 113
           L   G  CQV A+R ++         N+      VLG  C  + T +    FL +   + 
Sbjct: 168 LGVVGRPCQVAAVRKMQQGNLPGAQFNVPGAVELVLGLFCFASLTPD-FYSFL-SGQVQG 225

Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
           E V+  +  +D  V       +   +       +DL   I  +C  C D T+  AD+ VG
Sbjct: 226 EKVIKMDIPEDGPVVETSAGSYRWSM-------DDLRPYIHKACNLCLDPTSEWADIAVG 278

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLSLV--KNLLEI 212
                        +    + VR++RG+++L+L   K ++EI
Sbjct: 279 --------ATEYDRAWNTLVVRSDRGRDLLNLALDKGVIEI 311


>gi|224370425|ref|YP_002604589.1| putative coenzyme F420 hydrogenase subunit beta
           (8-hydroxy-5-deazaflavin-reducing hydrogenase subunit
           beta) (FRH) [Desulfobacterium autotrophicum HRM2]
 gi|223693142|gb|ACN16425.1| putative coenzyme F420 hydrogenase, beta subunit
           (8-hydroxy-5-deazaflavin-reducing hydrogenase, beta
           subunit) (FRH) [Desulfobacterium autotrophicum HRM2]
          Length = 369

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 90/224 (40%), Gaps = 29/224 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++A V   SD    L PRP L  T  EVL     K   +P +  L      G + 
Sbjct: 114 LEQGVIDAAVLTGSD---GLRPRPRLVTTALEVLDCTASKYIAAPTVACLNRATGKGYQN 170

Query: 62  LLFCGVGCQVQALRSVEHH-LNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPET 115
           L   G  CQ+  L ++  + L+L          +G  C      EG   +L     +P +
Sbjct: 171 LGIVGTPCQMTGLSTLRTNPLDLPDFKDVTGMTIGLFCTWALETEGFLDYLLQQGIDPAS 230

Query: 116 VLHYEFMQDYKVH-LKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
           V   E       + L  L+  ++      LP  ++   + P C  C D T    DL VG 
Sbjct: 231 VQSMEIPPPPAENVLLTLEKEVKT-----LPLAEIRKRVLPGCAVCPDMTALFCDLSVG- 284

Query: 175 MGVPKYTGISMTQHPQYIT--VRNERGKEML--SLVKNLLEITP 214
                    +  + P + T  VR+ERG+ ++  ++    LEI P
Sbjct: 285 ---------AFEEDPAWNTLIVRSERGQALVDKAIETGFLEIRP 319


>gi|298674974|ref|YP_003726724.1| coenzyme F420 hydrogenase [Methanohalobium evestigatum Z-7303]
 gi|298287962|gb|ADI73928.1| Coenzyme F420 hydrogenase [Methanohalobium evestigatum Z-7303]
          Length = 386

 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L  G+++  +   +  ++   P P++A + EE++ A+G K   S  +  L      G++ 
Sbjct: 151 LDEGLIDCAIVTTTSNEEPWKPIPIVATSYEELVKARGSKYIHSMTMEALMGAIQEGMRS 210

Query: 62  LLFCGVGCQVQALRSVE-------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       H      +  LG  C+D    +G+ +F++    + E
Sbjct: 211 IAFVGTSCNIDAVTKMQKSPYGFLHMFMRANILKLGLFCMDTFYYDGIKEFVENHGMKLE 270

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
            +   + M+  K   +   G  +EV  + L  +D     + SC  C D  +  AD+  G 
Sbjct: 271 AI---DSMKIRKGRFEFYMG--DEVRSYNL--SDFDSYRSSSCRFCTDLASENADISFGG 323

Query: 175 MGVP 178
           +G P
Sbjct: 324 IGSP 327


>gi|325958619|ref|YP_004290085.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Methanobacterium sp. AL-21]
 gi|325330051|gb|ADZ09113.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanobacterium sp. AL-21]
          Length = 426

 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 4/184 (2%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++  +  +    + L P P +A+T EE++ A   K    P  + L  +    +K+
Sbjct: 118 LELGIIDGALVTRMKKGNPLIPEPFIAKTKEEIIEASKSKYCPVPLNSALNELMTTKLKK 177

Query: 62  LLFCGVGCQVQALRSVE---HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
           +   G+ C +  +R  E   + L  + +  LG  C+   T  G    LK  S   E + +
Sbjct: 178 IAVVGLPCHIHGIRKAEKINNKLRKKIIIHLGIFCIYTPTFNGTKLLLKKLSLNEEKIKN 237

Query: 119 YEFM-QDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
            E+  + +   +K +D   E +         L   I   C  C D TN LAD+  G   +
Sbjct: 238 IEYRGKGWPGSMKIIDHKHEIIVNEYWKFIGLNFFIPFRCLKCCDGTNELADISFGDAWL 297

Query: 178 PKYT 181
           P+Y+
Sbjct: 298 PEYS 301


>gi|91774281|ref|YP_566973.1| F420H2 dehydrogenase subunit F [Methanococcoides burtonii DSM 6242]
 gi|91713296|gb|ABE53223.1| F420H2 dehydrogenase subunit F [Methanococcoides burtonii DSM 6242]
          Length = 343

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 27/218 (12%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++ VV +  +  ++      L  + E+V  AKG K T    L+ L     +  +
Sbjct: 106 LLRQGEIDCVVGITRN--EKWETELELFTSAEDVEKAKGTKYTYDSVLSVLR-DPFSKYE 162

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGL-DKFL-KAASSEPETVLH 118
           ++   GV CQ    R +  ++N + + ++G  C+++  +E + DK + +    + E V+ 
Sbjct: 163 KIAVIGVPCQAHGARLISENVNDKIVLIIGLLCMESFHQEVMTDKIIPEIMGVKAEDVVK 222

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPS----CYSCFDYTNALADLVVGY 174
            +F +  K      DG    VP         +  +AP     C+ C DYT+  AD+ VG 
Sbjct: 223 MDFGKG-KFWAYTKDGEEHSVP---------IAKVAPHARNPCHHCNDYTSVFADIAVGS 272

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
           +G P             + +R + G++   +V++ LE 
Sbjct: 273 VGTP--------DGWNSVLIRTDAGEKYFKMVESELEF 302


>gi|147668790|ref|YP_001213608.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           [Dehalococcoides sp. BAV1]
 gi|146269738|gb|ABQ16730.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Dehalococcoides sp. BAV1]
          Length = 428

 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 10/180 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVK 60
           L+TG+++  +   ++P   L+P   +ARTPEE+  A G K    P     A+ E  A   
Sbjct: 119 LETGLIDGALVSGANPSSPLTPASFIARTPEELKQAAGSK--YCPVAAASAISEITAKPG 176

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYV---LGTNCVDNGTREGLDKFLKAASSEPETV- 116
           R    G+ C +QA+R  E+   L K  +   LG  C    +  G +  LK        + 
Sbjct: 177 RYAVVGLPCHIQAIRKAENQNPLLKERIVLHLGIVCSSTMSFRGTEYILKQQGINKINLI 236

Query: 117 -LHYEF-MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVG 173
            LHY        +HL+   G  + +P             +P  C  C D  N LAD+ +G
Sbjct: 237 SLHYRTGGWPGDMHLEMACGDTQTLPLRNYHPYHGHGFFSPRRCLMCTDQLNELADISLG 296


>gi|390961312|ref|YP_006425146.1| coenzyme F420-reducing hydrogenase subunit beta [Thermococcus sp.
           CL1]
 gi|390519620|gb|AFL95352.1| coenzyme F420-reducing hydrogenase subunit beta [Thermococcus sp.
           CL1]
          Length = 276

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 25/215 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+ G+++ +V   S     L    V+ART EE+L   G + ++ P    + A +E   +K
Sbjct: 44  LEKGLIDGIVT--SKRTKGLEGEAVVARTKEELLETAGNRWSIVPFAARIKAKIEEEDLK 101

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK------LYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++    + CQ Q    +     LE        Y++   C+     E    +L+       
Sbjct: 102 KVAVVCLPCQAQFFGQMRDFPILEADFGNRIRYIVSLFCMGTFAFEAFLNYLRVKYG--- 158

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +  E + D K+    L+ H  E     +P  +    +   C  C DYT   +D+  G+
Sbjct: 159 --VRAEEIVDIKLTRDFLEIH-RESGVLTIPLREAFSYLQTGCLVCSDYTGVWSDISAGF 215

Query: 175 M-GVPKYTGISMTQHPQYITVRNERGKEMLSLVKN 208
           +   P +T          I  RN+RG+E++   +N
Sbjct: 216 VESEPGWT---------VIITRNQRGEELVRGAEN 241


>gi|410720758|ref|ZP_11360111.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanobacterium
           sp. Maddingley MBC34]
 gi|410600469|gb|EKQ54997.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanobacterium
           sp. Maddingley MBC34]
          Length = 370

 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 22/167 (13%)

Query: 60  KRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPET 115
           K +   G  C + A   +EH+  +       + LG  C++N +   L +FLK    E + 
Sbjct: 7   KSVTLVGTPCHIIAAEKMEHYPEILGDSPVDFKLGLFCMENFSHTYLKEFLKQNDIEMDD 66

Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
           +        ++V   HL  +++    F +P +     +  +C  C DYT+ LADL VG +
Sbjct: 67  I------DQFRVEKGHLWTYLKNGDVFKVPLSQAKICMRKNCQVCMDYTSELADLSVGSV 120

Query: 176 GV-PKYTGISMTQHPQYITVRNERGKEMLSLVKN--LLEITPTISSG 219
           G  P ++          I +R E+G + LS  +N   +E  P    G
Sbjct: 121 GSDPGWST---------IIIRTEKGLKALSKAENEGYIETKPITQQG 158


>gi|409393725|ref|ZP_11245022.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas sp. Chol1]
 gi|409121716|gb|EKM97779.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas sp. Chol1]
          Length = 416

 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + ++A+ G +   +     L  V A   ++
Sbjct: 118 LEQKLVDGVIQIQASQTDPLENVATISRSRQNIIASSGSRYAPASPAQALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     YV+   C    +  G ++ L     E E V  
Sbjct: 177 YLFIGKPCDVAAVRQMQAHDPRLKQNIPYVVSFMCAGTPSLHGTEQVLDQLGVEREDVTS 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK  +G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLK--NGDARTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
            G+ G  K Y           I +R ++G+E+ 
Sbjct: 295 DGWEGDEKGYPSFEERDGNSLILIRTDKGRELF 327


>gi|254443100|ref|ZP_05056576.1| Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminal
           domain family protein [Verrucomicrobiae bacterium
           DG1235]
 gi|198257408|gb|EDY81716.1| Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminal
           domain family protein [Verrucomicrobiae bacterium
           DG1235]
          Length = 367

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 1   MLKTGMVE-AVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGV 59
           +L+T  VE A+VC     +   + R  +ART EE+  A+  K    P L  L LV+A   
Sbjct: 52  LLETEQVEGALVCSSDFANGEFNFRLSIARTREELFEAQSSKYFDIPVLKGLDLVKAFEG 111

Query: 60  KRLLFCGVGCQVQAL--RSVEHHLNLEKL-YVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           K +   G+  Q+ +L  R  ++ L  EK+ + +   C  N  +E +++  +    +P+ +
Sbjct: 112 K-VAVVGLPSQINSLTRRMSKNKLLREKIGFRIALFCGHNSKKELIERVWEKKGIDPKKI 170

Query: 117 LHYEFMQDY---KVHLKHLDGHIEEVPYFCLPANDLVDVIA-PSCYSCFDYTNALADLVV 172
             + + Q +   ++ L   DG ++  P+        + +++   C +C D+    +DL  
Sbjct: 171 DRFRYRQGHWRGQMELTMKDGSVQRFPFQDFSHYQNLHILSLDRCLNCHDHMGYYSDLST 230

Query: 173 G 173
           G
Sbjct: 231 G 231


>gi|258404555|ref|YP_003197297.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796782|gb|ACV67719.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 355

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 16/173 (9%)

Query: 27  LARTPEEVLAA--KGVKPT----LSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH 80
           LARTP+++ A   KG+  +     + +L  L  V   G++R+ F G  CQV+ +R +E  
Sbjct: 137 LARTPDQLRALDDKGLTTSQVRAAASSLEVLGSVRKTGLRRVAFMGTPCQVETVRKMEIL 196

Query: 81  L--NLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYK-VHLK-HLDGHI 136
                E+LY     C  +G     D  L  A  +    L +    D + + L+ HL+  +
Sbjct: 197 AVPPAERLYCT-IGCFCDG-----DFLLGPAQQDRLEKLGFFRWNDVRHITLRDHLEFWL 250

Query: 137 EEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 189
            E     +P  DL  +   +C  C DY+   ADL VG  G P      + + P
Sbjct: 251 AEGKTRDIPMEDLDFMRRYACRLCTDYSAQFADLAVGGTGAPHGWSTVIARTP 303


>gi|253578782|ref|ZP_04856053.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849725|gb|EES77684.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 395

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 22/218 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS-PNLNTLALVEAAGV 59
           +L+   V+A++    DPDD+      ++ T EEV++  G +  +S P  + L +V++   
Sbjct: 98  LLENKKVDAIIHTTYDPDDQTKTISCVSTTVEEVISRCGSRYGISVPLKDILQIVQSD-- 155

Query: 60  KRLLFCGVGCQVQALR---SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE-- 114
           K+  F G  C V ALR   +    L    +Y+L   C    +    D+ LK   +  +  
Sbjct: 156 KKYAFVGKPCDVMALRRYLNKNEKLTKNIIYLLSFFCAGEPSVNAQDELLKKMGTSRQGC 215

Query: 115 -TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            T+++          +   DG   ++ Y       L   I   C  C D T  LAD+V  
Sbjct: 216 DTLVYRGNGWPGFTTVNTKDGRELKMEYKVAWGQYLGRDIRYICRFCMDGTGELADIV-- 273

Query: 174 YMGVPKYTGISMTQHPQY--------ITVRNERGKEML 203
                 +  +    HP +        I  RNE GK++L
Sbjct: 274 ---CADFWQLDNNNHPDFSEHEGRNIIIARNELGKQLL 308


>gi|52549204|gb|AAU83053.1| uncharacterized anaerobic dehydrogenase [uncultured archaeon
           GZfos26D6]
          Length = 396

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 64/240 (26%)

Query: 34  VLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLY------ 87
           +L A+G K    P ++ L     AG +R+   G  C+V+A+R ++   +LE+ Y      
Sbjct: 196 ILRARGTKYLRVPMMSKLEAALKAGKRRIAVVGTPCEVRAVRKLQQLWDLEREYPGVELT 255

Query: 88  VLGTNCVDN--------------GTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLD 133
           +LG  C ++              G    LDK  K   S+ +  +  E  +DY   ++ ++
Sbjct: 256 ILGLFCFESFDYLALKAYTKRTFGVE--LDKAEKTQISKGKYTVTAE-GKDYSCDVREME 312

Query: 134 GHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYIT 193
             I E                  C  C D+ + LAD+ +G +G P   G S       + 
Sbjct: 313 SEIRE-----------------GCSFCDDFASRLADIAIGSVGSPD--GYST------VI 347

Query: 194 VRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLI 253
           VR++ GK++L                D   F    V   + AK+ +   + A K +G ++
Sbjct: 348 VRSKAGKKLL----------------DATEFTRAEVDKKEIAKLVKFKKRNAAKNIGTIL 391


>gi|419955841|ref|ZP_14471962.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri TS44]
 gi|387967344|gb|EIK51648.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri TS44]
          Length = 416

 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 14/217 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + ++A+ G +   +     L  V A   ++
Sbjct: 118 LEHKLVDGVIQIQASQTDPLENVATISRSRQNIIASSGSRYAPASPAQALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     YV+   C    +  G ++ L     E E V  
Sbjct: 177 YLFIGKPCDVAAVRQMQAHDPRLKQNIPYVVSFMCAGTPSLHGTEQVLDKLGVEREDVTS 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK  +G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLK--NGDARTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEMLSLVK 207
            G+ G  K Y           I +R ++G+E+    K
Sbjct: 295 DGWEGDEKGYPSFEERDGNSLILIRTDKGRELFRNAK 331


>gi|435851521|ref|YP_007313107.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanomethylovorans hollandica DSM 15978]
 gi|433662151|gb|AGB49577.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanomethylovorans hollandica DSM 15978]
          Length = 386

 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++  +   S  ++   P P++ART E++L + G   + S  ++ L      G+  
Sbjct: 151 LEEGLIDCAIVTASSDEEPWKPVPIVARTYEDLLQSSGSIYSHSMTMDALMSAIRQGMNS 210

Query: 62  LLFCGVGCQVQAL-------RSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+       R   H     +++ LG  C+D+    GL +F++  +    
Sbjct: 211 IAFVGPSCNIDAVHKMQRSSRGFLHMFMRARIFKLGLFCMDSFDYGGLKQFIEGKN---- 266

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV---IAPSCYSCFDYTNALADLV 171
             +H   ++  K+      G  E          DL ++    + SC  C D      D+ 
Sbjct: 267 --MHLGDIEAMKIR----KGKFEVTTAAGQENFDLQELDNYRSSSCKYCTDMAAENTDIS 320

Query: 172 VGYMGVP 178
            G +G P
Sbjct: 321 FGGVGTP 327


>gi|268323352|emb|CBH36940.1| hypothetical protein, Coenzyme F420 hydrogenase/dehydrogenase, beta
           subunit family [uncultured archaeon]
          Length = 467

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 48/190 (25%)

Query: 34  VLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLY------ 87
           +L+A+G K    P ++ L     AG +R+   G  C+V+A+R ++   +LE+ Y      
Sbjct: 267 ILSARGTKYLRVPMMSKLEAALKAGKRRIAVVGTPCEVRAVRKLQQLWDLEREYPGVELT 326

Query: 88  VLGTNCVDN--------------GTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLD 133
           +LG  C ++              G    LDK  K   S+ + ++  E  +DY   ++ ++
Sbjct: 327 ILGLFCFESFDYLALKAYTKRTFGVE--LDKAEKTQISKGKYIVS-EGGKDYSCDVRQME 383

Query: 134 GHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYIT 193
             I E                  C  C D+ + LAD+ +G +G         +     + 
Sbjct: 384 AEIRE-----------------GCAFCDDFASRLADIAIGSVG--------SSDGYSTVI 418

Query: 194 VRNERGKEML 203
           VR++ GK++L
Sbjct: 419 VRSKAGKKLL 428


>gi|158521163|ref|YP_001529033.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Desulfococcus
           oleovorans Hxd3]
 gi|158509989|gb|ABW66956.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Desulfococcus oleovorans Hxd3]
          Length = 364

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 35/225 (15%)

Query: 1   MLKTGMVE-AVVCVQSDPDDRLSPRPVLARTPEEVLAAKGV--------------KPTLS 45
           +  TG ++ A+V  ++DP    S  P LA T +E++A+ G                 T S
Sbjct: 114 LFDTGRIDGAIVTRRTDP---FSREPHLATTRDEIIASAGFFMDTSHGMKHFGHDYSTYS 170

Query: 46  PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDN--GTR 99
           P++     V   G+ R+   G  CQ++A+R +E  L +       + LG  C  N   T 
Sbjct: 171 PSVQEFRPVLEKGLSRIALVGTPCQIEAVRKIE-VLGIVPSDSIKFCLGLFCSGNFSFTD 229

Query: 100 EGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCY 158
           +  D+       + + V       ++ V+L   +G +  +P       D VD +   +C+
Sbjct: 230 KEKDQMEAVGGFQWDAVTRINIKDNFMVYLS--NGKVLSIPL------DKVDFMKRFACH 281

Query: 159 SCFDYTNALADLVVGYMGVPKYTGISMTQHP-QYITVRNERGKEM 202
            C DY    AD+  G +G        +T+ P     + + RGK +
Sbjct: 282 FCMDYAAEYADISFGGIGAKDGWTTVITRTPLGRAVMADARGKTL 326


>gi|256811073|ref|YP_003128442.1| nitrite and sulfite reductase 4Fe-4S region [Methanocaldococcus
           fervens AG86]
 gi|256794273|gb|ACV24942.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           fervens AG86]
          Length = 620

 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 98/217 (45%), Gaps = 41/217 (18%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 77
           D+   P  ++ +  +++L +   K  +S  L+ L      G++R+   G+ CQ+  LR +
Sbjct: 110 DECWKPVSLVVQNADDLLKSAKSKYAIS-TLDALRKAGEMGLERVAVVGLPCQINGLRKL 168

Query: 78  EHHLNLEK-----------------LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           ++   L K                  Y++G  C +    E + + L     + E V  ++
Sbjct: 169 QYFPYLAKHDGELGKDGKPTKLPKIEYLIGLFCTEKFKYENMKEVLSKHGIDIEKVEKFD 228

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFDYTNALADLVVGYMGVPK 179
            ++D K+ L  ++G  +E+        DL +  I P C  C D+   +AD+ VG +G P+
Sbjct: 229 -IKDGKL-LACINGEKKEI--------DLKEFEICPGCKICRDFDAEMADVSVGCVGSPE 278

Query: 180 YTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI 216
             G S       IT+R ++G+E    +KN +E+   +
Sbjct: 279 --GYST------ITIRTKKGEE----IKNAIELKEGV 303


>gi|304315420|ref|YP_003850567.1| F420-reducing hydrogenase, subunit beta [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588879|gb|ADL59254.1| F420-reducing hydrogenase, subunit beta [Methanothermobacter
           marburgensis str. Marburg]
          Length = 281

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 14/184 (7%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L  G++E  V V    ++   P+P++A + +E+ AA G K T SPN+  L   V   G++
Sbjct: 37  LDEGIIEGAV-VAGPGEEFWKPQPMVAMSSDELKAAAGTKYTFSPNVMMLKKAVRQYGIE 95

Query: 61  RLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPE 114
           +L    + CQ   +R ++ +        +K+ +L G  C++N     L  F+        
Sbjct: 96  KLGTVAIPCQTMGIRKMQTYPFGVRFLADKIKLLVGIYCMENFPYTSLQTFICEKLG--- 152

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +  E ++   +       + ++     LP  +        C  C DY   LAD+  G 
Sbjct: 153 --VSMELVEKMDIGKGKFWVYTQD-DVLTLPLKETHGYEQAGCKICKDYVAELADVSTGS 209

Query: 175 MGVP 178
           +G P
Sbjct: 210 VGSP 213


>gi|452203057|ref|YP_007483190.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein [Dehalococcoides mccartyi
           DCMB5]
 gi|452110116|gb|AGG05848.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein [Dehalococcoides mccartyi
           DCMB5]
          Length = 428

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 10/180 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVK 60
           L+TG+++  +   ++P   L+P   +ARTPEE+  A G K    P     A+ E  A   
Sbjct: 119 LETGLIDGALVSGANPSSPLTPASFIARTPEELKQAAGSK--YCPVAAASAISEITAKPG 176

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYV---LGTNCVDNGTREGLDKFLKAASSEPETV- 116
           R    G+ C +QA+R  E+   L K  +   LG  C    +  G +  LK        + 
Sbjct: 177 RYAVVGLPCHIQAIRKAENQNPLLKERIVLHLGIVCSSTMSFRGTEYILKQQGINKINLI 236

Query: 117 -LHYEF-MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVG 173
            LHY        +HL+   G    +P             +P  C  C D  N LAD+ +G
Sbjct: 237 SLHYRTGGWPGDMHLEMACGDTLTLPLRNYHPYHGHGFFSPRRCLMCTDQLNELADISLG 296


>gi|337284577|ref|YP_004624051.1| Coenzyme F420 hydrogenase/dehydrogenase subunit beta [Pyrococcus
           yayanosii CH1]
 gi|334900511|gb|AEH24779.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit [Pyrococcus
           yayanosii CH1]
          Length = 275

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 23/209 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+ G+++ VV  +         + V+ART EE+L   G K ++ P    + A +E   +K
Sbjct: 43  LEKGLIDGVVTAKRVSG--FEGQAVVARTREEILETAGNKWSIVPFAARVKAKIEEEDLK 100

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK------LYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++    + CQ Q    +     LE        Y++   C+     E    +L+       
Sbjct: 101 KVAIVCLPCQAQFFGQMREFPILETDFGERIRYIVSLFCMGTFAFEAFLNYLRMKYDIKA 160

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +    +++  + ++H D  ++      LP  ++   +   C  C DYT   +D+  G+
Sbjct: 161 EEIKNMALKEGFLEIQHDDSLLQ------LPLKEVYSYLQTGCLVCADYTGTWSDISAGF 214

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML 203
             + K  G ++      I  RN RG+E++
Sbjct: 215 --IEKEKGWTV------IITRNARGEELV 235


>gi|150401466|ref|YP_001325232.1| coenzyme F420-reducing hydrogenase subunit beta [Methanococcus
           aeolicus Nankai-3]
 gi|150014169|gb|ABR56620.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus aeolicus Nankai-3]
          Length = 282

 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 89/216 (41%), Gaps = 34/216 (15%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+  +++  V      + R  P+  +A T EE+L A G K T  PNL+ L   +   G +
Sbjct: 38  LENNLLDGAVVASVGEEFRAVPK--VATTVEEILEAAGTKYTTCPNLSVLKQAIREYGCE 95

Query: 61  RLLFCGVGCQVQALR-SVEH-----HLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           ++   G  CQ+ A R S+++     H+N +    +G  C++N    G+   ++       
Sbjct: 96  KVGVVGTPCQIIATRKSLKYPVGFRHMNDKIALTVGIFCMENFPYNGMKTIVEE------ 149

Query: 115 TVLHYEFMQDYKVHLKHLDGHIE------EVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
              H     D    L    G         E     L      + IA  C+ C DYT  LA
Sbjct: 150 ---HCGVKMDDVAKLDIGKGKFWTYTKWGETKSIKLADTHPYEQIA--CHVCTDYTAELA 204

Query: 169 DLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
           D+  G +G P   G S       +  R E+G+E L+
Sbjct: 205 DISTGSVGSPD--GWST------VFARTEKGEEFLN 232


>gi|289192762|ref|YP_003458703.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
 gi|288939212|gb|ADC69967.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
          Length = 619

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 44/234 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V    D+   P  ++ +  E++L A   K  +S  L+ L      G++
Sbjct: 96  LLENGKIDGAIVV---GDECWKPVSLVVQNAEDLLKAAKSKYAIS-TLDALRKAGEMGLE 151

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK-----------------LYVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR +++   L K                  Y++G  C +    + + 
Sbjct: 152 KVAVVGLPCQINGLRKLQYFPYLAKHDGELGKNGKPAKLPKIEYLIGLFCTEKFRYDNMK 211

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
           + L     + E V  ++  +     L +++G  +E+        DL +  I P C  C D
Sbjct: 212 EVLAKHGIDIEKVDKFDIKKGK--LLVYINGEKKEI--------DLKEFEICPGCKMCRD 261

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI 216
           +   LAD+ VG +G P   G S       + +R E+G+E    +KN +E+   +
Sbjct: 262 FDAELADVSVGCVGSP--DGYST------VIIRTEKGEE----IKNAVELKEGV 303


>gi|301060801|ref|ZP_07201616.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal
           domain protein [delta proteobacterium NaphS2]
 gi|300445198|gb|EFK09148.1| coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal
           domain protein [delta proteobacterium NaphS2]
          Length = 320

 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 28/215 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+V+A +  +S   D LS  P + RT  +V A  G K T  P +            R
Sbjct: 56  LEQGLVDAWIMARSH--DSLSGVPTVCRTRAQVQACAGTKLTSVPVVGGFLEAAFKDPGR 113

Query: 62  LLFCGVGCQVQALRSVE--HHLNL----EKL-YVLGTNCVDNGTREGLDKFLKAASS--E 112
                  CQ  AL  ++   H  L    EKL  V+G  C   G   G  +  +A S   +
Sbjct: 114 FGVVATPCQCLALAKIKASDHPRLRQAAEKLALVVGLFC---GWSFGHRELSRALSGRVD 170

Query: 113 PETVLHYEF----MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
           P+ V   +      Q  +V +K  +  +        P + +   + P+C  CFD T   A
Sbjct: 171 PDDVTGLDIPPSRHQSLEVFIKGRETSV--------PLSKVTGAVRPACAYCFDMTAEPA 222

Query: 169 DLVVGYMGVPKYTGISMTQHPQYITVRNERGKEML 203
           DL VG   +P   G    +H     VR++ G+++L
Sbjct: 223 DLSVGSARLPG--GWDEARHWNQTVVRSQMGEDLL 255


>gi|146282838|ref|YP_001172991.1| hypothetical protein PST_2497 [Pseudomonas stutzeri A1501]
 gi|145571043|gb|ABP80149.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 416

 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 14/213 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + ++A+ G +   +     L  V A   ++
Sbjct: 118 LEKNLVDGVIQIQASHSDPLENVATISRSRQNIIASSGSRYAPASPGEALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     Y++   C    + +G ++ L     E + V  
Sbjct: 177 YLFIGKPCDVAAVRQMQQHDPRLKENIPYIVSFMCAGTPSLQGTEQVLDKLEVERKDVTA 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK  +G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLK--NGDERTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
            G+ G  K Y      +    I VR  +G+E+ 
Sbjct: 295 DGWEGDEKGYPSFEEREGNSLILVRTAKGRELF 327


>gi|294496160|ref|YP_003542653.1| F420H2 dehydrogenase subunit F [Methanohalophilus mahii DSM 5219]
 gi|292667159|gb|ADE37008.1| F420H2 dehydrogenase subunit F [Methanohalophilus mahii DSM 5219]
          Length = 342

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 105/239 (43%), Gaps = 21/239 (8%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G V+  V +  +  D+      +    E++  AKG K T    L+ L         
Sbjct: 105 LLELGEVDCFVGITRN--DKWETELEVFTDSEQIKRAKGTKYTYDSVLSALRD-PFEKYD 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGL-DKFLKAASS-EPETVLH 118
           ++   GV CQ    R +  ++N + + ++G  C+++   + + +K +K      PE V+ 
Sbjct: 162 KIGVIGVPCQAHGARLISENVNDKIVVIIGLLCMESFYHDVMSEKIIKEIMGLNPEDVVK 221

Query: 119 YEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
           ++F +  +  + K  + H  ++P     A +        C+ C DYT+  AD+ +G +G 
Sbjct: 222 FDFAKGKFWAYTKDGESHSVKIPEVGPHARN-------PCHHCCDYTSVSADISIGSVGA 274

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAK 236
           P             + +R + G++   + ++ LEI      G      + T+K ++N++
Sbjct: 275 P--------DGWNSVLIRTDEGEKYFKMAEDELEIMDDPKPGMDLVKKLATMKHNNNSQ 325


>gi|147920172|ref|YP_686063.1| putative coenzyme F420 hydrogenase, beta subunit [Methanocella
           arvoryzae MRE50]
 gi|110621459|emb|CAJ36737.1| putative coenzyme F420 hydrogenase, beta subunit [Methanocella
           arvoryzae MRE50]
          Length = 332

 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 8/217 (3%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSP-NLNTLALVEAAGVK 60
           L  G++   V  +   D+ L P P +ART EE++ A   K    P N+    LV+    +
Sbjct: 25  LNNGLITGAVVTRMSKDNPLVPEPFIARTQEEIIEASCSKYCPVPVNMALKELVKTGSKE 84

Query: 61  RLLFCGVGCQVQALRSVEHH-LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 119
            +   G+ C +  L+  ++  L    L   G  C    +       L+        V   
Sbjct: 85  TIAVVGLPCHIHGLQKAKYKGLFKCNLIFFGIFCGHTPSFNATQWLLRQNGINVADVKQI 144

Query: 120 EFMQD---YKVHLKHLDGHIEEVPYFCLPANDLVD-VIAPSCYSCFDYTNALADLVVGYM 175
           E+        + +  +DG    + Y     +        P C  C+D T   AD+  G  
Sbjct: 145 EYRGKGWPGSMTVTCMDGSKVSLDYHMYWDSGFGKYFFPPRCTLCYDGTAEFADISFGDA 204

Query: 176 GVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
            +P++    +      I  R   G  +LS  K ++E+
Sbjct: 205 WLPRFKNDRIGT--SVIISRTSVGDRLLSQCKGIIEL 239


>gi|337287125|ref|YP_004626598.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Thermodesulfatator indicus
           DSM 15286]
 gi|335359953|gb|AEH45634.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Thermodesulfatator indicus DSM 15286]
          Length = 367

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 42/204 (20%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPR---PVLARTPEEVLAAKGVK--------------PT 43
           + K GM++  V  +     R+SP    P L  + EEV+ A G                 T
Sbjct: 114 LFKRGMIDGAVVAK-----RISPFKVVPSLVTSAEEVIEAAGFYHDVSAGVQDWSEKYST 168

Query: 44  LSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH--LNLEKLY-VLGTNCVDNGTRE 100
            +P+   +       +KR+   G  CQ+  LR ++       E  Y +LG  C       
Sbjct: 169 FAPSFEEMRPAMVEKLKRVAIVGTPCQIHTLRKMQFFKVAPSETFYMLLGLFC------S 222

Query: 101 GLDKFLKAASSEPETVLHYEFMQDYKVHLKHL------DGHIEEVPYFCLPANDLVDVIA 154
           G   F +A   + E +  +++    K+++K        +G ++ +P      +++ D+  
Sbjct: 223 GHFNFDEAGRKKLEEIGGFKWDDIAKINIKDALIITLQNGEVKRIPL-----DEVEDLKR 277

Query: 155 PSCYSCFDYTNALADLVVGYMGVP 178
           P+C  C DY    AD+  G +G P
Sbjct: 278 PACKFCEDYAAEFADISFGGIGAP 301


>gi|91772648|ref|YP_565340.1| nitrite and sulphite reductase [Methanococcoides burtonii DSM 6242]
 gi|91711663|gb|ABE51590.1| coenzyme F420-dependent sulfite reductase [Methanococcoides
           burtonii DSM 6242]
          Length = 639

 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 33/198 (16%)

Query: 23  PRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRS------ 76
           P   +  + EE+L  +G K +  P +  L   +   +K +   GV CQ    R       
Sbjct: 135 PDSCIVASKEELLDTQGAKYSAVPVMAALRQSKDE-LKNVAMVGVPCQTYGTRRTQFFTG 193

Query: 77  -----VEHHLNLEKL------YVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDY 125
                +E  +N EK       Y +G  C++N   E L + +K+   + + +  Y    D 
Sbjct: 194 LNVHPMEVGMNGEKADIPNIPYTIGLFCMENFNYEKLSEHMKSIGIDLDKIRKYAIRLDV 253

Query: 126 KVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISM 185
            + +   DG IE      +   D+ D +   C  C D  + +AD+  G++G    TG + 
Sbjct: 254 MI-VTTDDGEIE------ISLKDIADCVWDGCRICRDAVSKVADISAGHVG--SSTGWTT 304

Query: 186 TQHPQYITVRNERGKEML 203
                 +  RN++G E+L
Sbjct: 305 ------LIARNDKGLELL 316


>gi|339494474|ref|YP_004714767.1| hypothetical protein PSTAB_2397 [Pseudomonas stutzeri ATCC 17588 =
           LMG 11199]
 gi|386021203|ref|YP_005939227.1| hypothetical protein PSTAA_2604 [Pseudomonas stutzeri DSM 4166]
 gi|327481175|gb|AEA84485.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
 gi|338801846|gb|AEJ05678.1| hypothetical protein PSTAB_2397 [Pseudomonas stutzeri ATCC 17588 =
           LMG 11199]
          Length = 416

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 14/213 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + ++A+ G +   +     L  V A   ++
Sbjct: 118 LEKNLVDGVIQIQASHTDPLENVATISRSRQNIIASSGSRYAPASPGEALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     Y++   C    + +G ++ L     E + V  
Sbjct: 177 YLFIGKPCDVAAVRQMQQHDPRLKENIPYIVSFMCAGTPSLQGTEQVLDKLEVERKDVTA 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK  +G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLK--NGDERTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
            G+ G  K Y      +    I VR  +G+E+ 
Sbjct: 295 DGWEGDEKGYPSFEEREGNSLILVRTAKGRELF 327


>gi|11499420|ref|NP_070660.1| F420H2:quinone oxidoreductase, 39 kDa subunit [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648713|gb|AAB89418.1| F420H2:quinone oxidoreductase, 39 kDa subunit, putative
           [Archaeoglobus fulgidus DSM 4304]
          Length = 379

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 26/214 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAK--GVKPTLSPNLNTL--ALVEAA 57
           L+ G++E  + V  D + R   R V  +TPE++   K  G K + +  L  L  A++++ 
Sbjct: 147 LEMGIIERAIFVARDSNWRT--RVVTIKTPEQLYDRKITGTKYSYADVLPALKEAVLKSE 204

Query: 58  GVKRLLFCGVGCQVQALRSVEHHLN-LEKLYV-LGTNCVDNGTREGLDKFL-KAASSEPE 114
            V    F G  C V A+R ++      E++ + +G  C +N     L KFL + A+++  
Sbjct: 205 AVG---FVGTPCMVSAVRKMQQAFKKFERVKLAIGLFCTENFYHHDLYKFLLEKANADLR 261

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
             +  + ++  K  ++  DG    +P       D  ++I   C  C D+    +D+ VG 
Sbjct: 262 NAVKTD-IKKGKFIVEMKDGSKVRIP-----VKDFEEIIPSGCKVCQDFAAVESDVSVGS 315

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEMLSLVKN 208
           +G P      M        VR E  K++L  ++ 
Sbjct: 316 VGSPNRFSTVM--------VRTEVAKQILDYIRE 341


>gi|408382471|ref|ZP_11180015.1| coenzyme F420 hydrogenase [Methanobacterium formicicum DSM 3637]
 gi|407814826|gb|EKF85449.1| coenzyme F420 hydrogenase [Methanobacterium formicicum DSM 3637]
          Length = 374

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 22/151 (14%)

Query: 60  KRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPET 115
           K +   G  C + A   +EH+ N+       + LG  C++N +   L +FLK  + E   
Sbjct: 7   KSVTLVGTPCHIIASEKMEHYSNILGDSPVDFKLGLFCMENFSHSYLKEFLKQNNIEMND 66

Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
           +        ++V   HL  +++    F  P +     +  +C  C DYT+ LADL VG +
Sbjct: 67  I------NQFRVEKGHLWAYLKNGDVFKAPLSQAKVCMRKNCQVCMDYTSELADLSVGSV 120

Query: 176 GVPKYTGISMTQHPQYITV--RNERGKEMLS 204
           G            P + TV  R E+G + L+
Sbjct: 121 G----------SAPGWSTVIARTEKGLKALN 141


>gi|52549133|gb|AAU82982.1| coenzyme F420-reducing hydrogenase subunit beta [uncultured
           archaeon GZfos24D9]
          Length = 374

 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 21/208 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++A V  ++  D      P +A   E++LAA G K T  P+++ +      G K
Sbjct: 120 LLEHGEIDAAVVSKTSED--WIAEPFVATKKEDILAAAGSKYTQCPSVSGVGDAFEQGYK 177

Query: 61  RLLFCGVGCQVQALRSVE----HHLNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPET 115
            +   G+ C +Q +R V+      +  +K+ +L G  C +      L   L    +  E 
Sbjct: 178 NVALVGLPCHIQGMRKVQLSKGFDVGADKVKLLIGLLCSETFDMPMLKNKLLELGTRIED 237

Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
           V  +   +   +        ++       P  ++ D +  +C  C+D+    AD+ VG +
Sbjct: 238 VEKFNIKKGSFIVYTKAGKELK------TPIKNMRDCVREACDYCYDFAAEFADVSVGSI 291

Query: 176 GVPKYTGISMTQHPQYITVRNERGKEML 203
           G     G S       +  R++ GKE++
Sbjct: 292 GSE--FGWST------VITRSDAGKELV 311


>gi|312136920|ref|YP_004004257.1| nitrite and sulfite reductase 4fe-4S region [Methanothermus
           fervidus DSM 2088]
 gi|311224639|gb|ADP77495.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermus
           fervidus DSM 2088]
          Length = 629

 Score = 47.0 bits (110), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 38/224 (16%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +LK   ++  + V    D+   P   + + P+++  +   K T+S  L+ L      G K
Sbjct: 106 LLKKRKIDGAIVVG---DELWKPTSWIIKDPDDIEKSAKSKYTVS-TLDALKKASEIGCK 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKL-----------------YVLGTNCVDNGTREGLD 103
            +   G+ CQ+Q LR +++   L K                  Y++G  C++    +   
Sbjct: 162 EVAVVGLPCQIQGLRKIQYFPYLAKYDGELGKDGKPTSLPKIKYLIGLFCMEKFEHDSFY 221

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDY 163
           + L+    + E V  ++   +    L +L     E+P   L   D    +   C  C D+
Sbjct: 222 ETLEKHGIDIEKVEKFDIKGNK--LLVYLKNEKHEIP---LKELD----VCSGCKICRDF 272

Query: 164 TNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK 207
            + +AD+ VG +G P+  G S       I +R ++G+E+ + VK
Sbjct: 273 DSEMADVSVGSVGSPE--GYST------IIIRTKKGEEIKNAVK 308


>gi|435852351|ref|YP_007313937.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanomethylovorans hollandica DSM 15978]
 gi|433662981|gb|AGB50407.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanomethylovorans hollandica DSM 15978]
          Length = 343

 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 29/219 (13%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++ VV +  +  +      VL   PE+V    G K T    L  L         
Sbjct: 105 LLRKGEIDCVVGISRN--NVWETELVLMTKPEDVDKTTGTKYTYDSVLEALKE-PFEKYN 161

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFL--KAASSEPETVLH 118
           R+   GV CQ    R +  ++N + + ++G  C+++   E + + +  +      + V+ 
Sbjct: 162 RIAVVGVPCQAHGARLISENVNDKIVLIVGLLCMESFYHETMREKIVPEIMKLNVDDVVK 221

Query: 119 YEF----MQDYKVHLKHLDGHIEEV-PYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
            +F      +Y    +     I EV PY   P           C++C DYT+  AD+ VG
Sbjct: 222 MDFGKGKFWNYTKDGQEHSVKIAEVAPYARHP-----------CHNCCDYTSVFADISVG 270

Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
            +G P             + +R + G+    +VK+ LEI
Sbjct: 271 SVGTP--------DGWNCVLIRTDEGQRYFDMVKDTLEI 301


>gi|428776032|ref|YP_007167819.1| coenzyme F420 hydrogenase [Halothece sp. PCC 7418]
 gi|428690311|gb|AFZ43605.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halothece sp. PCC 7418]
          Length = 474

 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 1   MLKTGMVE-AVVCVQSDPD-DRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAG 58
           +L+TG ++ AVV  Q  P  DR   +P++A T EE+LAA      ++P L  L  + A  
Sbjct: 130 LLETGRIDGAVVLRQGSPTPDRA--QPLIATTAEEILAAAQSVYAVTPMLTILPEI-ATF 186

Query: 59  VKRLLFCGVGCQVQALRSVE---HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE- 114
             RL F G+  QV ALR ++   H    + ++V G     N     +  FL++     + 
Sbjct: 187 DGRLAFVGLPEQVAALRMLQAAGHPTAQKVVFVAGPYTGTNMYLGAVRAFLRSRGVSDQI 246

Query: 115 --TVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFDYTNALADL 170
             T L +   +    + ++  DG +     F    N L+   I+ +C    D+TN L DL
Sbjct: 247 AITKLQWRAGEWPGYLQVETADGQVFRAKKFYY--NYLIPFYISRNCQITPDFTNELTDL 304

Query: 171 VVGYMGVPKY 180
            VG    P++
Sbjct: 305 SVGDAWSPQF 314


>gi|52550015|gb|AAU83864.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos34H10]
          Length = 371

 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 23/209 (11%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++A V  ++  D      P +A    ++LAA G K T  P+++ +      G K
Sbjct: 117 LLEHGEIDAAVVSKTSED--WIAEPFVATKKADILAAAGSKYTQCPSVSGVGDAFEQGYK 174

Query: 61  RLLFCGVGCQVQALRSVEHHLNLE------KLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
            +   G+ C +Q +R V+     +      KL ++G  C +      L   L    ++ E
Sbjct: 175 NVALVGLPCHIQGMRKVQLSKGFDVGADNVKL-LIGLLCSETFDMPMLKNKLLELGTQIE 233

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
            V+ +   +   +        ++       P  ++ D +  +C  C+D+    AD+ VG 
Sbjct: 234 DVVKFNIKKGSFIVYTKAGKELK------TPIKNMRDCVREACDYCYDFAAEFADVSVGS 287

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML 203
           +G     G S       +  R++ GKE++
Sbjct: 288 IGSE--FGWST------VITRSDAGKELV 308


>gi|336476291|ref|YP_004615432.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Methanosalsum zhilinae DSM
           4017]
 gi|335929672|gb|AEH60213.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosalsum zhilinae DSM 4017]
          Length = 340

 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 35/217 (16%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK-----PTLSPNLNTLALVEA 56
           L+TG+++AVV V  DP   L P   +    + V++  G +     P +S  LN   + + 
Sbjct: 113 LETGLIDAVVVVAEDPW-TLKPYSAVISDSDSVVSKAGSRYNWWVPLVSA-LNDAVIRQK 170

Query: 57  AGVKRLLFCGVGCQVQALRSV-EHHLNLEKLY------VLGTNCVDNGTREGLD--KFLK 107
              + +   GV C  QA+  + E  L+L   +      ++G  C      E  D  K L+
Sbjct: 171 --YRNIAVVGVPCVAQAISRIRESDLDLLMPFRDSIRLMIGLFCT-----ETFDYVKLLE 223

Query: 108 AASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNAL 167
              S   ++L ++ ++ + V  K L+  +++      P ++L D + P C  C D+T   
Sbjct: 224 EKLSREHSILPFK-VERFDVKGK-LEITLDDGNTITFPLSELEDCVRPGCNVCTDFTANY 281

Query: 168 ADLVVGYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
           +D+  G +G P  YT          + +R E+GK++L
Sbjct: 282 SDISAGSVGSPDGYT---------TLIIRTEKGKKLL 309


>gi|52548669|gb|AAU82518.1| coenzyme F420-reducing hydrogenase subunit beta [uncultured
           archaeon GZfos18B6]
          Length = 374

 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 21/208 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++A V  ++  D      P +A    ++LAA G K T  P+++ +      G K
Sbjct: 120 LLEHGEIDAAVVSKTSED--WIAEPFVATKKADILAAAGSKYTQCPSVSGVGDAFEQGYK 177

Query: 61  RLLFCGVGCQVQALRSVE----HHLNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPET 115
            +   G+ C +Q +R V+      +  +K+ +L G  C +      L   L    ++ E 
Sbjct: 178 NVALVGLPCHIQGMRKVQLSKGFDVGADKVKLLIGLLCSETFDMPMLKNKLLELGTQIED 237

Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
           V  +   +   +        ++       P  ++ D +  +C  C+D+    AD+ VG +
Sbjct: 238 VEKFNIKKGSFIVYTKAGKELK------TPIKNMRDCVREACDYCYDFAAEFADVSVGSI 291

Query: 176 GVPKYTGISMTQHPQYITVRNERGKEML 203
           G     G S       +  R++ GKE++
Sbjct: 292 GSE--FGWST------VITRSDAGKELV 311


>gi|392421702|ref|YP_006458306.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri CCUG
           29243]
 gi|390983890|gb|AFM33883.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri CCUG
           29243]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + V+A+ G +   +     L  V A   ++
Sbjct: 118 LENKLVDGVIQIQASQTDPLENVATISRSRQNVIASSGSRYAPASPGEALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     Y++   C    + +G ++ L     +   V  
Sbjct: 177 YLFIGKPCDVAAVRQMQQHNPRLKENIPYIVSFMCAGTPSLQGTEQVLDKLEVKRSDVTA 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK  +G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLK--NGDERTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
            G+ G  K Y      +    I VR  +G+E+ 
Sbjct: 295 DGWEGDEKGYPSFEEREGNSLILVRTAKGRELF 327


>gi|431926976|ref|YP_007240010.1| coenzyme F420-reducing hydrogenase subunit beta [Pseudomonas
           stutzeri RCH2]
 gi|431825263|gb|AGA86380.1| coenzyme F420-reducing hydrogenase, beta subunit [Pseudomonas
           stutzeri RCH2]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + ++A+ G +   +     L  V A   ++
Sbjct: 118 LENRLVDGVIQIQASQTDPLENVATISRSRQNIIASSGSRYAPASPGEALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     +++   C    + +G ++ L     E   V  
Sbjct: 177 YLFIGKPCDVAAVRQMQQHNPRLKENIPFIVSFMCAGTPSLQGTEQVLDKLEVERSDVTA 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK+  G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLKN--GDERTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
            G+ G  K Y      +    I VR  +G+E+ 
Sbjct: 295 DGWEGDEKGYPSFEEREGNSLILVRTAKGRELF 327


>gi|255599067|ref|XP_002537146.1| conserved hypothetical protein [Ricinus communis]
 gi|223517335|gb|EEF25237.1| conserved hypothetical protein [Ricinus communis]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 19/183 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK--PTLSPNLNTLALVEAAG 58
           +L++G V+ V  +++DP D L     ++R   EVL   G +  P+ SP      L++  G
Sbjct: 30  LLESGKVDFVAHIKADPADPLGNAMTISRNRAEVLGGAGSRYAPS-SPLAQLQQLLQMEG 88

Query: 59  VKRLLFCGVGCQVQALRSV--EHHLNLEKL-YVLGTNCVDNGTREGLDKFLKAASSEPET 115
             R    G  C +  LR++  E  +  E++ Y+L   C    +R+G    LK     P+ 
Sbjct: 89  --RFAIVGKPCDIAGLRAIVREQLVPAERIPYMLSFMCAGIPSRKGTLAILKKLDVAPQD 146

Query: 116 VLHYEF-------MQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
           V  + F       M     H    DG  +E+ Y       L   +   C  C D     A
Sbjct: 147 VASFTFRGNGWPGMSTATTH----DGRKQEMDYASSWGTILNRHLQFRCKVCPDGIGEFA 202

Query: 169 DLV 171
           D+V
Sbjct: 203 DVV 205


>gi|452747770|ref|ZP_21947562.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri NF13]
 gi|452008333|gb|EME00574.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri NF13]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 14/213 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + V+A+ G +   +     L  V A   ++
Sbjct: 118 LENKLVDGVIQIQASQTDPLENVATISRSRQNVIASSGSRYAPASPGEALKWV-AMSTEK 176

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ H   L     Y++   C    + +G ++ L     +   V  
Sbjct: 177 YLFIGKPCDVAAVRQMQQHNPRLKENIPYIVSFMCAGTPSLQGTEQVLDKLEVKRSDVTA 236

Query: 119 YEFMQD-----YKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV- 172
           + +  D      K  LK  +G    + Y       L   +   C  C D     AD+V  
Sbjct: 237 FRYRGDGWPGLTKATLK--NGDERTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCA 294

Query: 173 -GYMGVPK-YTGISMTQHPQYITVRNERGKEML 203
            G+ G  K Y      +    I VR  +G+E+ 
Sbjct: 295 DGWEGDEKGYPSFEEREGNSLILVRTAKGRELF 327


>gi|333910912|ref|YP_004484645.1| coenzyme F420 hydrogenase [Methanotorris igneus Kol 5]
 gi|333751501|gb|AEF96580.1| Coenzyme F420 hydrogenase [Methanotorris igneus Kol 5]
          Length = 366

 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 36/214 (16%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS-PNLNTLALVEAAGVK 60
           L  G+++  + V  D    + P+ VLA T EE++ A G +   + P L   AL EA  V+
Sbjct: 138 LDEGLIDGAIVVSED-KWTMEPKSVLATTKEELIKAAGSRYNWNVPILE--ALKEAVMVR 194

Query: 61  RL---LFCGVGCQVQA-----------LRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFL 106
           +L      G  C + A           LR  +  + L+    +G  C +      L   +
Sbjct: 195 KLEKLAIVGTPCVINAVFQILASDNDLLRPFKKAIRLK----IGLFCTETFKYSELMAKI 250

Query: 107 KAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNA 166
           K     P  +   E ++  K+ +  L+G  +E+P       ++   +   C  C D+T  
Sbjct: 251 KEMGINPWEIKKME-IKKGKLAIDLLNGETKEIPL-----KEIEYCVRKGCSVCRDFTAL 304

Query: 167 LADLVVGYMGVPKYTGISMTQHPQYITVRNERGK 200
           ++D+  G +G P+  G++       + VRNE GK
Sbjct: 305 VSDISAGNVGTPE--GVTT------LIVRNEWGK 330


>gi|374300218|ref|YP_005051857.1| coenzyme F420 hydrogenase [Desulfovibrio africanus str. Walvis Bay]
 gi|332553154|gb|EGJ50198.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 370

 Score = 45.8 bits (107), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 47/202 (23%)

Query: 24  RPVLARTPEEVLAAKGVKPTLS--PNL-----NTLALVEAAG------VKRLLFCGVGCQ 70
           +PVLA++ +++L + G  P +S  P L      TL++ E AG      + ++ F G+  Q
Sbjct: 139 KPVLAKSAKDLLLSAGHYPAVSNGPALLGELYQTLSVRECAGSLAQGWLHKVAFVGLPDQ 198

Query: 71  VQALRSVEHHLNLEKLYVLGTNCV--------DNGTREGLDKFLK---AASSEPETVLHY 119
           + ALR      N+E L ++ ++ +        D   + G+ + L+   A     E +L +
Sbjct: 199 ILALR------NMETLGIIPSDAIALYVGLFCDGAYQLGITEQLRLEQAGKFNWENILRF 252

Query: 120 EFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIA-PSCYSCFDYTNALADLVVGYMGVP 178
              ++ K+HL   DG +        P   L   +    C +C DY+  LAD+  G     
Sbjct: 253 TCAEELKIHLD--DGRV------VTPPEKLRKKLGMKGCSACTDYSAELADISFG----- 299

Query: 179 KYTGISMTQHPQYITVRNERGK 200
              G+  +     + VR ERG+
Sbjct: 300 ---GLGASDGWTTVVVRTERGQ 318


>gi|5931749|emb|CAB56640.1| F420H2-dehydrogenase 40 kDa subunit [Methanolobus tindarius]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           +L+TG V+ +V +  D         ++   PE+V    G K T    L+  AL E     
Sbjct: 105 LLETGTVDCIVGIARD--GAWGTELIVMTKPEDVDRTTGTKYTYDSVLS--ALREPFEKY 160

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFL--KAASSEPETVL 117
            ++   GV CQ    R +  + N + + +LG  C+++   + + + +  +      E V+
Sbjct: 161 DKIGVIGVPCQAHGARLLFENNNDKIVVILGLLCMESFYHDVMTEKIVPEVMGLNLEDVV 220

Query: 118 HYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
             +F +  +  + K  + H  ++P     A +        C++C DYT+  AD+ +G +G
Sbjct: 221 KMDFGKGKFWNYTKDGEAHSVKIPEVAHYARN-------PCHNCCDYTSVSADISLGSVG 273

Query: 177 VPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNA 235
            P             + +R + GK+M  L+K+ +EI      G      +  +K D+N+
Sbjct: 274 TP--------DGWNCVLIRTDVGKKMFELIKDKVEIMEDPKPGMDLIKKLAKMKHDNNS 324


>gi|284162671|ref|YP_003401294.1| coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
 gi|284012668|gb|ADB58621.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 87/182 (47%), Gaps = 16/182 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAK--GVKPTLSPNLNTL-ALVEAAG 58
           L+ G+++  + V  D  +R  P  V  + P+++ + +  G K +L+P L  L  +++ AG
Sbjct: 180 LEMGIIDTALMVSRD--ERWKPIIVHVKHPDQLKSERITGTKYSLAPVLPELNKVIKRAG 237

Query: 59  VKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTN--CVDNGTREGLDKFLKAASSEPETV 116
             RL   G  C +  LR ++  + L     L  +  C++N     L +FL+  + +   V
Sbjct: 238 --RLAIVGTPCIITGLRLLQKEIPLYNKVKLAVSLFCMENFRYSSLMEFLREKNIDATKV 295

Query: 117 LHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
             ++ ++  K  ++ +DG       F  P  +L + ++  C  C D+    +D+ +G +G
Sbjct: 296 KKFD-IKKGKFIVEMVDG------VFDCPIKELEEHVSNGCNYCLDFAGVDSDVSIGSVG 348

Query: 177 VP 178
            P
Sbjct: 349 SP 350


>gi|15678369|ref|NP_275484.1| coenzyme F420-reducing hydrogenase subunit beta-like protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621398|gb|AAB84847.1| coenzyme F420-reducing hydrogenase, beta subunit homolog
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 406

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSP-NLNTLALVEAAGV 59
           +L+ G+++  +  + +P+  L P P +ARTP E++ ++G K    P N+    ++E  G 
Sbjct: 112 LLEEGLIDGALVTRMNPERPLEPEPFIARTPSEIIESRGSKYCPVPANVALKEILEVPG- 170

Query: 60  KRLLFCGVGCQVQALRSVE---HHLNLEKLYVLGTNC 93
            R    G+ C +  +R  E     L    +Y LG  C
Sbjct: 171 -RYAVVGLPCHIHGVRKAEVISRKLRERIVYHLGIVC 206


>gi|212224712|ref|YP_002307948.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit [Thermococcus
           onnurineus NA1]
 gi|212009669|gb|ACJ17051.1| Coenzyme F420 hydrogenase/dehydrogenase beta subunit [Thermococcus
           onnurineus NA1]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 25/199 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+ G+++ VV  +    + L  + V+ART EE+L   G K ++ P  + + A +E   +K
Sbjct: 44  LEKGLIDGVVTAKRT--EGLEGQAVVARTREELLETAGNKWSIVPFASRMKAKIEEEDLK 101

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK------LYVLGTNCVDNGTREGLDKFLKA-----A 109
            +    + CQ Q    +     LE        Y++   C+     E    +L+      A
Sbjct: 102 NVAVVCLPCQAQFFGQMRDFPLLESDFGERIKYIVSLFCIGTFAFEAFLNYLRMKHGIMA 161

Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
               + VL  +F++ Y     H D          LP  ++   +   C  C DYT   +D
Sbjct: 162 QDIKDIVLKGDFLEIY-----HGD------SVLSLPIKEVYSYLQAGCLVCTDYTGTWSD 210

Query: 170 LVVGYMGVPKYTGISMTQH 188
           +  G++   +   + +T++
Sbjct: 211 ISAGFVESERGWTVLITRN 229


>gi|296109548|ref|YP_003616497.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [methanocaldococcus infernus ME]
 gi|295434362|gb|ADG13533.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 26/209 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK--PTLSPNLNTLA-LVEAAG 58
           L+  +++  + ++ D +  L P   LA T EEV+ A G K    +SP LN L   V    
Sbjct: 123 LEEELIDGAIVIKQD-NWTLEPISYLATTKEEVVKAAGSKYLRKVSP-LNALKKAVMEEK 180

Query: 59  VKRLLFCGVGCQVQALRSVEHHLN-----LEKLYVLGTN--CVDNGTREGLDKFLKAASS 111
           ++RL   G  C ++A+  ++  +N       K   L  +  C +      + K L+    
Sbjct: 181 LERLAIVGTPCIIEAMAKIQSSVNDLLKPFRKAIRLKISLFCFEIYDYAKMLKKLEEEGI 240

Query: 112 EPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
            P  +   E ++  K  L  +DG I+E         +L  V+   C SC D+T   +D+ 
Sbjct: 241 NPWDIKKME-IERGKFLLYLVDGFIKE-----YKIKELDPVMREGCKSCIDFTGLYSDIS 294

Query: 172 VGYMGVPKYTGISMTQHPQYITVRNERGK 200
           VG +G P+  G S       + +RN+ G+
Sbjct: 295 VGNVGTPE--GYST------VIIRNKWGE 315


>gi|126178281|ref|YP_001046246.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           [Methanoculleus marisnigri JR1]
 gi|125861075|gb|ABN56264.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanoculleus marisnigri JR1]
          Length = 339

 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 29/211 (13%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS-PNLNTLA-LVEAAGV 59
           L  G+++AVV V  DP   + P   +  + EE++   G + +   P L +L   V     
Sbjct: 110 LDEGLIDAVVTVTRDPWT-MKPSSAVITSSEELVQHAGSRYSWWVPLLASLKEAVVTRKY 168

Query: 60  KRLLFCGVGC---QVQALRSVEHHL----NLEKLYVLGTNCVDNGTREGL--DKFLKAAS 110
           +R+   GV C     QA+R+ +H L          V+G  C +      L   K      
Sbjct: 169 RRVAVVGVPCVARATQAIRASDHELLRPYAKAIRLVIGLFCTETFDYAKLVEGKLQSEKK 228

Query: 111 SEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
            EP  + H +           LD ++++  +  +P  +L + + P C  C D+T   AD+
Sbjct: 229 IEPWEIRHLDIK-------GKLDVYLQDERHISIPLAELEESVRPGCRVCNDFTAVNADV 281

Query: 171 VVGYMGVPK-YTGISMTQHPQYITVRNERGK 200
             G +G P  YT          + +RN+ G+
Sbjct: 282 SAGAVGSPDGYT---------TLVIRNDIGR 303


>gi|333910248|ref|YP_004483981.1| coenzyme F420 hydrogenase [Methanotorris igneus Kol 5]
 gi|333750837|gb|AEF95916.1| Coenzyme F420 hydrogenase [Methanotorris igneus Kol 5]
          Length = 258

 Score = 45.1 bits (105), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 12/177 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           LK G+++AVV V ++      P P +A  PE++L A   K ++SPN N L          
Sbjct: 26  LKEGILDAVVVVGAN---NWKPYPFIATKPEDILKASKSKYSISPN-NKLLEYATENYDN 81

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEF 121
           +   GV CQ+      +  +       +G  C  N   + +   +       + V   + 
Sbjct: 82  VGLVGVPCQILGGNKFDLKMK------IGLFCTKNFPYDAIKNIVDGLGIPIDRVEKMDI 135

Query: 122 MQ-DYKVHLKHLDGHIEEVPYFC-LPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
            +  + V    ++  I++      +P  ++     P+C  C D++   AD+ VG +G
Sbjct: 136 KKGKFIVKTSEIENLIKKKEMVKEIPIKEIEKFANPACRLCCDFSAEYADISVGSVG 192


>gi|333910174|ref|YP_004483907.1| coenzyme F420 hydrogenase [Methanotorris igneus Kol 5]
 gi|333750763|gb|AEF95842.1| Coenzyme F420 hydrogenase., Selenate reductase [Methanotorris
           igneus Kol 5]
          Length = 534

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 23/227 (10%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           ++ T + + V+ + +   +   P  V     E +L   G K T  P L+ L     +  K
Sbjct: 98  LVYTLLEDGVISICAGNKEEWKPDVVTVEDKETLLKTLGSKYTFVPVLSKLHDEVVSKDK 157

Query: 61  RLLFCGVGCQVQALRSVE--HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
           ++   G+ CQ++AL ++E  +       Y +G  C  N +     K ++    + E V+ 
Sbjct: 158 KIAVVGLPCQIRALHNMEKTYFRKYNVHYKIGILCTHNFSYTTFKKIVEDLGLKVEDVIK 217

Query: 119 YEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVP 178
            +  +  K+     DG         +P + L D+    C+ C +  +  AD+ +G MG P
Sbjct: 218 VDINKG-KMIFYTKDGEKS------IPVSKLDDLCDECCHQCPELYSRFADINIGSMGSP 270

Query: 179 KYTGISMTQHPQYITVRNERGKEML--SLVKNLLEI----TPTISSG 219
                        + + +++GKE+   +L K  +EI     P I  G
Sbjct: 271 --------DGWNTVIIMSKKGKELFEKALKKGYIEIYDKEDPKIQKG 309


>gi|298676011|ref|YP_003727761.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           domain-containing protein [Methanohalobium evestigatum
           Z-7303]
 gi|298288999|gb|ADI74965.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 341

 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 15/182 (8%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGV 59
           +L  G ++ VV +  +  +      VL   P +V    G K T    ++  AL E     
Sbjct: 104 LLDKGEIDCVVGITRN--ENWETELVLMTEPSQVDQTAGTKYTYDSVIS--ALREPFKDY 159

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGL--DKFLKAASSEPETVL 117
            R+   GV CQ    R +  ++N +   ++G  C+++   E +  D   K    + E V+
Sbjct: 160 DRIAVVGVPCQAHGARLIFENINDKIAVIIGLFCMESFHHETMLNDIIPKVLGLDIEQVV 219

Query: 118 HYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
             +F +  +  + K  +GH  ++P     A +        C++C DYT   AD+ +G +G
Sbjct: 220 KMDFAKGKFWAYTKDGEGHSVKIPTVAEYARN-------PCHNCCDYTAVHADISIGSVG 272

Query: 177 VP 178
            P
Sbjct: 273 AP 274


>gi|224368475|ref|YP_002602638.1| coenzyme F420-reducing hydrogenase [Desulfobacterium autotrophicum
           HRM2]
 gi|223691191|gb|ACN14474.1| coenzyme F420-reducing hydrogenase [Desulfobacterium autotrophicum
           HRM2]
          Length = 371

 Score = 44.3 bits (103), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 39/213 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK--------------PTLSP 46
           + +TG +   V  ++    R    P LA + EE+L A G                 T SP
Sbjct: 114 LFETGKINGAVVSRNMETGRT---PWLATSKEEILDAAGSHFNLSQGMETFGERYSTFSP 170

Query: 47  NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGL 102
           ++  L  +   G++R+ F G  CQ+  +R ++  L +      +  LG  C  N T    
Sbjct: 171 SIKALGEIRREGLERIAFVGTPCQINTIRRMQ-ALGVVPADSIVLCLGLFCSGNFT---- 225

Query: 103 DKFLKAASSEPETVLHYEFMQDYKVHLKH------LDGHIEEVPYFCLPANDLVDVIAPS 156
               K      E+   +++    K+++K         G I E+P      ++L  +   +
Sbjct: 226 --LTKENFHALESKYQFDYHDIEKINIKENFILRLATGEIREIPI-----SELDPLKRTA 278

Query: 157 CYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 189
           C  C D++   AD+  G +G        +T+ P
Sbjct: 279 CRYCKDFSAEFADISFGGIGADDGYTTVITRTP 311


>gi|57234998|ref|YP_180962.1| iron-sulfur cluster-binding protein/coenzyme F420-reducing
           hydrogenase, beta subunit [Dehalococcoides ethenogenes
           195]
 gi|57225446|gb|AAW40503.1| iron-sulfur cluster-binding protein/coenzyme F420-reducing
           hydrogenase, beta subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 10/180 (5%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVK 60
           L+TG+++  +   + P   L+P   +ART EE+  A G K    P     A+ E AA   
Sbjct: 119 LETGLIDGALVSIAPPFSPLTPTGFIARTAEELKQAAGSK--YCPVAANTAISEIAARPG 176

Query: 61  RLLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           R    G+ C +QA+R  E     L    +  LG  C    + +G +  LK      ++V 
Sbjct: 177 RYAVAGLPCHIQAIRKAERQNPVLQERIVLHLGIVCSSTMSFKGTEYILKKQGINKDSVT 236

Query: 118 HYEFMQD---YKVHLKHLDGHIEEVPYFCLPANDLVDVIAP-SCYSCFDYTNALADLVVG 173
              +  +     + L+   G    +P              P  C  C D  N LAD+ +G
Sbjct: 237 SLSYRTNGWPGNMRLETCGGTTLRLPLKAYHPYHGHGFFTPRRCLICNDQLNELADISLG 296


>gi|73668206|ref|YP_304221.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina barkeri str.
           Fusaro]
 gi|72395368|gb|AAZ69641.1| coenzyme F420 hydrogenase beta subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 344

 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 21/189 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L TG+V+AVV V  DP   L P  ++    E ++   G +      L   +L EA     
Sbjct: 115 LDTGLVDAVVTVTEDPW-TLKPHSMVITKSEALVGQAGSRYNWWVPL-VYSLKEAVVNRK 172

Query: 59  VKRLLFCGVGCQVQALRSVEHHLNL-------EKLYVLGTNCVDNGTREGL--DKFLKAA 109
            + +   GV C VQA+R +    N           +V+G  C ++   E L   K     
Sbjct: 173 YRNIAVVGVPCVVQAVRKMLETDNQLVGPYKKSIRFVMGLFCTESFDYEKLIAGKLKSEY 232

Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
           + EP  V   +     ++ L   DG       + +P  +L D   P C  C D+T   AD
Sbjct: 233 ALEPMKVCRIDVKGKLEITLD--DGT-----QYVIPLTELEDTTRPGCSVCTDFTALKAD 285

Query: 170 LVVGYMGVP 178
           +  G +G P
Sbjct: 286 ISAGSVGSP 294


>gi|336476127|ref|YP_004615268.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Methanosalsum zhilinae DSM
           4017]
 gi|335929508|gb|AEH60049.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosalsum zhilinae DSM 4017]
          Length = 340

 Score = 44.3 bits (103), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 25/198 (12%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRS 76
           D+      +L   PE+V    G K T    ++  AL E      R+   GV CQ+   R 
Sbjct: 119 DENWQTELILMTKPEDVDKTTGTKYTYDSVVS--ALREPFEKFDRIAVVGVPCQIHGSRL 176

Query: 77  VEHHLNLEKLYVLGTNCV-----DNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKH 131
           +  ++N + + ++G  C+     D  T E + + L  + SE   V+  +F +  K     
Sbjct: 177 IMDNINDKIVLLVGLFCMESFYHDVMTEEIIPEKLGLSISE---VIKLDFAKG-KFWAYT 232

Query: 132 LDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQY 191
            DG    VP   +P  ++  +    C++C DYT   AD+ VG +G P             
Sbjct: 233 RDGESHNVP---IP--EIAPLARDPCHACCDYTAIYADISVGSVGAP--------DGWNS 279

Query: 192 ITVRNERGKEMLSLVKNL 209
           + +R E G+    +V+ L
Sbjct: 280 VLIRTEAGERYFDMVEGL 297


>gi|327400433|ref|YP_004341272.1| coenzyme F420 hydrogenase [Archaeoglobus veneficus SNP6]
 gi|327315941|gb|AEA46557.1| Coenzyme F420 hydrogenase [Archaeoglobus veneficus SNP6]
          Length = 331

 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 89/211 (42%), Gaps = 27/211 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           ++ G++EA   V+ D  +   P   +A++ EE++ A G K + +   + L  +  AG   
Sbjct: 116 MEMGIIEAAAVVRRD--EEWKPAAFVAKSVEELVQASGTKYSYA---DVLPALRKAGKVS 170

Query: 62  LLFCGVGCQVQALRSVEHHLNLEK---LYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
               G  C V   R ++ +    +     V+G  C +N   E L +FL++   +   V  
Sbjct: 171 AAIVGTPCMVSGARKLQQNFAKYRNNIRLVVGLFCTENFYYEDLRRFLESKGIDISRV-- 228

Query: 119 YEFMQDYKVHLKHLDGHIEEVPY-FCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGV 177
                  K+ +K   G     P     P  ++ +++   C  C D+    +D+ +G +G 
Sbjct: 229 ------EKMDIKK--GKFIVSPQGVSFPVKEMDEIVPSGCKVCQDFAAVESDVSIGSVGA 280

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKN 208
               G S       + VR+E  K+++  ++ 
Sbjct: 281 SD--GFSA------VIVRSEVAKQIVDYIRE 303


>gi|294496439|ref|YP_003542932.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292667438|gb|ADE37287.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 333

 Score = 43.9 bits (102), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 87/212 (41%), Gaps = 32/212 (15%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAA---G 58
           L+ G+++AVV V  DP   L P+  +  + E ++++ G +      L   AL EA     
Sbjct: 108 LERGIIDAVVTVTEDPW-TLKPKSSVIMSSEALISSAGSRYNWWVPL-LAALKEAVIRKK 165

Query: 59  VKRLLFCGVGCQVQALRSVEHHLNLEKL--------YVLGTNCVDNGTREGL--DKFLKA 108
            K +    + C  +A+  +    N E L        YV+G  C ++   E L   K    
Sbjct: 166 CKNIAIVALPCAARAVEKLRKSDN-ELLGPFAKSIKYVIGLFCTESFDYEKLMEGKLKSE 224

Query: 109 ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
               P  +   +      V LK+     EE+    +P  D+ D I P C+ C D+    A
Sbjct: 225 LQINPHDIERMDVRGKLVVKLKN-----EEIS---IPLKDIEDTIRPGCHICKDFDALYA 276

Query: 169 DLVVGYMGVPKYTGISMTQHPQYITVRNERGK 200
           D+  G +G P        Q    + VR++ GK
Sbjct: 277 DIAAGSVGSP--------QGYTTLIVRSDTGK 300


>gi|374636587|ref|ZP_09708150.1| nitrite and sulphite reductase 4Fe-4S region [Methanotorris
           formicicus Mc-S-70]
 gi|373558544|gb|EHP84881.1| nitrite and sulphite reductase 4Fe-4S region [Methanotorris
           formicicus Mc-S-70]
          Length = 616

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 103/235 (43%), Gaps = 44/235 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V    ++   P  ++ +  E++L     K T+S  L+ L      G++
Sbjct: 96  LLENGKIDGAIVV---GEECWKPVSLVVQNAEDLLKTAKSKYTVS-TLDALRKAGEMGLE 151

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK-----------------LYVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR +++   L K                  Y++G  C++    + + 
Sbjct: 152 KVAVVGLPCQINGLRKLQYFPYLSKHDGELGKNGKPVKLPKIEYLIGLFCMEKFDYDNMK 211

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
           + L     + E V  ++  +     L +++G  +E+        DL +  I   C  C D
Sbjct: 212 EVLAKHGIDIEKVEKFDIKKGK--LLVYINGDKKEI--------DLKEFEICSGCKMCRD 261

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 217
           +  ++AD+ VG +G P   G S       + +R E+G+E    +KN +E+   ++
Sbjct: 262 FDASMADVSVGSVGSP--DGYST------VIIRTEKGEE----IKNAVELKEGVN 304


>gi|333910914|ref|YP_004484647.1| Coenzyme F420 hydrogenase., hydrogensulfite reductase
           [Methanotorris igneus Kol 5]
 gi|333751503|gb|AEF96582.1| Coenzyme F420 hydrogenase., Hydrogensulfite reductase
           [Methanotorris igneus Kol 5]
          Length = 617

 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 44/237 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V    D+   P  ++ +  E++L     K  +S  L+ L      G++
Sbjct: 96  LLENGKIDGAIVV---GDECWKPVSLVVQNAEDLLKTAKSKYAVS-TLDALRKAGEMGLE 151

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK-----------------LYVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR +++   L K                  Y++G  C +    + + 
Sbjct: 152 KVAVVGLPCQINGLRKLQYFPYLAKHDGELGKNGKPVKLPKIEYLIGLFCTEKFDYDNMK 211

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
           + L     + E V  ++  +     L +++G  +E+        DL +  I   C  C D
Sbjct: 212 EVLAKHGIDIEKVEKFDIKKGK--LLVYINGEKKEI--------DLKEFEICSGCKMCRD 261

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 219
           +   +AD+ VG +G P   G S       + +R E+G+E    +KN +E+   +  G
Sbjct: 262 FDAEMADVSVGCVGSP--DGYST------VIIRTEKGEE----IKNAVELKEGVDLG 306


>gi|222444627|ref|ZP_03607142.1| hypothetical protein METSMIALI_00239 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434192|gb|EEE41357.1| 4Fe-4S binding domain protein [Methanobrevibacter smithii DSM 2375]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 60  KRLLFCGVGCQVQALRSV---EHHLNLEKLYV-LGTNCVDNGTREGLDKFLKAASSEPET 115
           K+    G  CQ+ A   +   E       + V +G  C++N + + L ++LK+   E   
Sbjct: 4   KKTAMVGTPCQILAATKINRYEEKTGGSPIDVKIGLFCMENFSYQYLKRYLKSRDIELFE 63

Query: 116 VLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
           V  +   +  +  +L  +DG++     F +P  +       +C+ C DYT+ ++D+ VG 
Sbjct: 64  VKEFRIEKGQFVAYL--IDGNV-----FKIPIAETEPFTRKNCHICTDYTSDVSDISVGS 116

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML 203
           +G PKY       H   I VR+++GK+++
Sbjct: 117 VGSPKY-------HSTVI-VRSQKGKQII 137


>gi|296110016|ref|YP_003616965.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [methanocaldococcus infernus ME]
 gi|295434830|gb|ADG14001.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 40/225 (17%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V  D  +   P  ++ +T E+++     K T+S  L  L      G+K
Sbjct: 96  LLEKGEIDGAIVVGRD--EYWKPVSMVVQTAEDIVKGAKSKYTVS-TLEALRKAGELGLK 152

Query: 61  RLLFCGVGCQVQALRSVEHH----------------LNLEKL-YVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR +++                 + L K+ Y +G  C      +   
Sbjct: 153 KVAVVGLPCQINGLRKLQYFPYHSRHDFEIGKDGKPVKLPKIEYFIGLFCTKKFEYDNFK 212

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAP--SCYSCF 161
           + L+      + V  ++  +     L +L   ++E+P         +    P   C  C 
Sbjct: 213 EVLEKYGVNIKDVEKFDIKKGK--LLVYLKNEVKEIP---------IKEFKPLSGCKVCK 261

Query: 162 DYTNALADLVVGYMGVPK-YTGISMTQHPQYITVRNERGKEMLSL 205
           D+T  L+D+ VG +G P+ YT + +       T + E+ KE L L
Sbjct: 262 DFTAELSDISVGSVGSPEGYTTVIIR------TKKGEKIKEALEL 300


>gi|289192883|ref|YP_003458824.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
 gi|288939333|gb|ADC70088.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           sp. FS406-22]
          Length = 621

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 104/234 (44%), Gaps = 43/234 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G ++  + V  D  +   P  ++  + +++L     K T+S  L+ L      G++
Sbjct: 96  LLESGKIDGAIVVGKD--EFWKPVSMIVLSEKDILKGSKSKYTVS-TLDALRKAGEMGLE 152

Query: 61  RLLFCGVGCQVQALRSVEHH----------------LNLEKL-YVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR +++                 + L K+ Y++G  C++      L 
Sbjct: 153 KVAVVGLPCQINGLRKLQYFPYHAKHDPELGRDGKPVKLPKIEYLIGLFCMEKFEYNSLK 212

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
           + L     + + V  ++  +     L +++G  +E+        DL ++ I   C  C D
Sbjct: 213 EVLSKYGIDIKDVEKFDIKKGN--LLVYVNGEKKEI--------DLKEIEICSGCKMCRD 262

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI 216
           +   LAD+ +G +G P   G S       I +R ++G+E    +KN +E+   +
Sbjct: 263 FDAELADVSIGSVGSP--DGYST------IIIRTKKGEE----IKNAVELKEGV 304


>gi|148642195|ref|YP_001272708.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanobrevibacter smithii ATCC 35061]
 gi|148551212|gb|ABQ86340.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanobrevibacter smithii ATCC 35061]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 60  KRLLFCGVGCQVQALRSV---EHHLNLEKLYV-LGTNCVDNGTREGLDKFLKAASSEPET 115
           K+    G  CQ+ A   +   E       + V +G  C++N + + L ++LK+   E   
Sbjct: 4   KKTAMVGTPCQILAATKINRYEEKTGGSPIDVKIGLFCMENFSYQYLKRYLKSRDIELFE 63

Query: 116 VLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
           V  +   +  +  +L  +DG++     F +P  +       +C+ C DYT+ ++D+ VG 
Sbjct: 64  VKEFRIEKGQFVAYL--IDGNV-----FKIPIAETEPFTRKNCHICTDYTSDVSDISVGS 116

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML 203
           +G PKY       H   I VR+++GK+++
Sbjct: 117 VGSPKY-------HSTVI-VRSQKGKQII 137


>gi|261350833|ref|ZP_05976250.1| coenzyme F420-reducing hydrogenase, beta subunit-like protein
           [Methanobrevibacter smithii DSM 2374]
 gi|288860451|gb|EFC92749.1| coenzyme F420-reducing hydrogenase, beta subunit-like protein
           [Methanobrevibacter smithii DSM 2374]
          Length = 359

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 20/149 (13%)

Query: 60  KRLLFCGVGCQVQALRSV---EHHLNLEKLYV-LGTNCVDNGTREGLDKFLKAASSEPET 115
           K+    G  CQ+ A   +   E       + V +G  C++N + + L ++LK+   E   
Sbjct: 4   KKTAMVGTPCQILAATKINRYEEKTGGSPIDVKIGLFCMENFSYQYLKRYLKSRDIELFE 63

Query: 116 VLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
           V  +   +  +  +L  +DG++     F +P  +       +C+ C DYT+ ++D+ VG 
Sbjct: 64  VKEFRIEKGQFVAYL--IDGNV-----FRIPIAETEPFTRKNCHICTDYTSDVSDISVGS 116

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML 203
           +G PKY       H   I VR+++GK+++
Sbjct: 117 VGSPKY-------HSTVI-VRSQKGKQII 137


>gi|307353407|ref|YP_003894458.1| coenzyme F420 hydrogenase [Methanoplanus petrolearius DSM 11571]
 gi|307156640|gb|ADN36020.1| Coenzyme F420 hydrogenase [Methanoplanus petrolearius DSM 11571]
          Length = 338

 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 27/190 (14%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRP--VLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGV 59
            ++G+++ V+ V    +DR +  P  VL  + E + A+ G +      + TLA ++ A +
Sbjct: 111 FESGLIDGVITVS---EDRWTHEPFSVLITSDEAITASAGSRYNWW--VPTLASLKEAVI 165

Query: 60  K----RLLFCGVGCQVQALRSVEHHLN-LEKLY------VLGTNCVDNGTREGL--DKFL 106
           K    R+   G  C VQALR ++   N L K +      ++G  C +      L   K  
Sbjct: 166 KKKLSRIAVVGTPCAVQALRKMKESDNDLVKPFGSSIRLIIGLFCTETFDYGKLIEGKLK 225

Query: 107 KAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNA 166
                EP  +  ++     ++ +K  DG ++ +        +L + I P C+ C D+T  
Sbjct: 226 SELDIEPWNIKSFDVKG--RLEIKMNDGSVQVISL-----KELEECIRPGCFHCTDFTAV 278

Query: 167 LADLVVGYMG 176
            +D+  G +G
Sbjct: 279 DSDISAGSVG 288


>gi|312137324|ref|YP_004004661.1| coenzyme f420 hydrogenase [Methanothermus fervidus DSM 2088]
 gi|311225043|gb|ADP77899.1| Coenzyme F420 hydrogenase [Methanothermus fervidus DSM 2088]
          Length = 358

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 19/186 (10%)

Query: 57  AGVKRLLFCGVGCQVQALRSVEHH-----LNLEKLYVLGTNCVDNGTREGLDKFLKAASS 111
            G  ++   G  CQ+ A   +E +      N      +G  C++N + E L K L +   
Sbjct: 2   GGEDKIAMVGTPCQIIAATLMEKYSSQLKRNFPIDIKIGLFCMENFSYEYLKKLLHSYG- 60

Query: 112 EPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
                + +  +   ++   +   H+       +P + L   +  SC  C D+T+ LAD+ 
Sbjct: 61  -----IKFRDVVSCRIEGSNAYFHLINKDVVSIPLSTLRKSMRKSCKICMDFTSELADIS 115

Query: 172 VGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKA 231
           VG +G PK  G S       + +R+E+G +++   K    I   +   DR   + +  K 
Sbjct: 116 VGSVGSPK--GWST------VIIRSEKGLKLVEKAKKAKYIETKMLDADRLNLIEKLAKI 167

Query: 232 DDNAKM 237
             N  +
Sbjct: 168 KKNKNL 173


>gi|94266514|ref|ZP_01290203.1| 4Fe-4S ferredoxin, iron-sulfur binding:Coenzyme F420
           hydrogenase/dehydrogenase beta subunit-like [delta
           proteobacterium MLMS-1]
 gi|93452874|gb|EAT03391.1| 4Fe-4S ferredoxin, iron-sulfur binding:Coenzyme F420
           hydrogenase/dehydrogenase beta subunit-like [delta
           proteobacterium MLMS-1]
          Length = 451

 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 100/234 (42%), Gaps = 27/234 (11%)

Query: 32  EEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK---LYV 88
           E++ +A+  K +  P L+ L  + +A V+R+   GV CQ+  L +++  +   +    Y 
Sbjct: 144 EDLSSAQKSKYSPIPLLSALRQLPSA-VERVGLVGVACQMHGLYNLQDLIPAYRKLQFYK 202

Query: 89  LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQD--YKVHLKHLDGHIEEVPYFCLPA 146
           +G  C    T   +D   K A +EP T L +   Q   Y  +         E+       
Sbjct: 203 IGLICDRTMTAAAIDYMGKLAGNEPLTNLTWRDKQQPAYPGNPVVKTASGREITLQAAQR 262

Query: 147 NDLVDVIAP-SCYSCFDYTNALADLVV----GYMGVPKYTGISMTQHPQYITVRNERGKE 201
            ++ D   P  C  CFD  N  ADL +    G  GV +  G S+      + VR + G+ 
Sbjct: 263 MEIKDFFTPVRCRLCFDKLNVFADLTLGDPHGIKGVDRQGGESV------VLVRADTGRR 316

Query: 202 MLS-----LVKNLLEITPTISSGDRRPFVMETVKADDNAKM--GRGPSQPAPKF 248
           +++      V +L EI P  ++  ++   +E  +    A M    G  +P P+F
Sbjct: 317 LITDAVHQGVVSLREIAPEEATKGQK---IEQKRGQWAAAMEAWAGMGRPLPRF 367


>gi|288932072|ref|YP_003436132.1| Coenzyme F420 hydrogenase [Ferroglobus placidus DSM 10642]
 gi|288894320|gb|ADC65857.1| Coenzyme F420 hydrogenase [Ferroglobus placidus DSM 10642]
          Length = 356

 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 14/165 (8%)

Query: 18  DDRLSPRPVLARTPEEVLAAK--GVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALR 75
           D+   P  V  R+ EE+   +  G K + +P +  L  +      ++ F G  C +  LR
Sbjct: 140 DEMFRPYVVHVRSAEELYDTRITGTKYSFAPVMPELHRI-IKRFDKIGFIGTPCMISGLR 198

Query: 76  SVEHHLNLEKLYV---LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQ-DYKVHLKH 131
            ++  + L +  V   +G  C +N     L  FLK+  ++ +  +  +  + ++ V  K 
Sbjct: 199 KLQKKVPLYEKRVRLAVGLFCTENFYWHQLYDFLKSRGADLKNAVKTDITKGNFIVTFK- 257

Query: 132 LDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMG 176
            DG       F +P  ++  ++   C+ C D++   AD+ VG +G
Sbjct: 258 -DGS-----EFVIPVKEMEPIVPEGCHVCQDFSAVEADVSVGSVG 296


>gi|154151235|ref|YP_001404853.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanoregula
           boonei 6A8]
 gi|153999787|gb|ABS56210.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanoregula boonei 6A8]
          Length = 340

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 23/190 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++AVV V  DP   L P   +    E ++   G +      L  LA ++ A + R
Sbjct: 110 LEQGLIDAVVTVTEDPWT-LKPSSAVITKSEVLIREAGSRYGWWVPL--LAALKEACITR 166

Query: 62  ----LLFCGVGCQVQALRSVEHHLN-LEKLY------VLGTNCVDNGTREGL--DKFLKA 108
               +   GV C VQA   +    N L + Y      V+G  C +     GL   K  K 
Sbjct: 167 KYTKVAVIGVPCAVQAAARIRSSDNDLLRPYAKGIRLVVGLFCTETFDYAGLVHGKLEKK 226

Query: 109 ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
               P  +   +      + LK  D H+       +P  DL + I P C  C D+++  A
Sbjct: 227 YHLAPHEIKKLDVKGKLDI-LKQDDSHLS------IPLADLEETIRPGCRICTDFSSLSA 279

Query: 169 DLVVGYMGVP 178
           DL  G +G P
Sbjct: 280 DLSAGSVGSP 289


>gi|15669061|ref|NP_247865.1| coenzyme F420-reducing hydrogenase subunit beta [Methanocaldococcus
           jannaschii DSM 2661]
 gi|2496134|sp|Q58280.1|Y870_METJA RecName: Full=Uncharacterized protein MJ0870
 gi|1591554|gb|AAB98876.1| coenzyme F420-reducing hydrogenase, beta subunit (frhB)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 620

 Score = 43.1 bits (100), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 44/235 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V    D+   P  ++ +  E++L     K  +S  L+ L      G++
Sbjct: 96  LLENGKIDGAIVV---GDECWKPVSLVVQNAEDLLKTAKSKYAIS-TLDALRKAGEMGLE 151

Query: 61  RLLFCGVGCQVQALRSVE-------HHLNLEK----------LYVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR ++       H L L +           Y++G  C +    + + 
Sbjct: 152 KVAVVGLPCQINGLRKLQYFPYHAKHDLELGRNGKPVKLPKIEYLIGLFCTEKFRYDNMK 211

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
           + L     + E V  ++  +     L +++G  +E         DL +  I   C  C D
Sbjct: 212 EVLSKHGIDIEKVEKFDIKKGK--LLVYVNGEKKEF--------DLKEFEICSGCKMCRD 261

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 217
           +   +AD+ VG +G P   G S       I +R E+G+E    +KN +E+   ++
Sbjct: 262 FDAEMADVSVGCVGSP--DGYST------IIIRTEKGEE----IKNAVELKEGVN 304


>gi|91774180|ref|YP_566872.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein
           [Methanococcoides burtonii DSM 6242]
 gi|91713195|gb|ABE53122.1| Coenzyme F420 hydrogenase subunit beta [Methanococcoides burtonii
           DSM 6242]
          Length = 389

 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 22/188 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L  G+++  V  +   D+     PV+ RT  EVL + G   T S  L  L      G+  
Sbjct: 154 LDEGLLDCAVVTKRSKDEPWKAEPVIVRTSAEVLESAGSIYTHSMTLEPLMSAIKQGMGS 213

Query: 62  LLFCGVGCQVQALRSVEH------HLNLE-KLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       HL L  ++   G  C+D+   +G+ +F+++      
Sbjct: 214 IGFVGPSCNIDAVHKMQTSSYGFLHLFLRARVLKFGLFCMDSFEHDGIKEFVESKG---- 269

Query: 115 TVLHYEFMQDYKVH-LKHLDGHIEEVPYFCLPANDLVDV---IAPSCYSCFDYTNALADL 170
                  M    +H +K   G  E      + + DL ++      SC  C D  +   D+
Sbjct: 270 -------MDLNDIHSMKIRKGLFELGTSEGMKSYDLSELDQYRCSSCKYCTDMVSENTDI 322

Query: 171 VVGYMGVP 178
             G +G P
Sbjct: 323 SFGGVGTP 330


>gi|423119235|ref|ZP_17106919.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5246]
 gi|376399166|gb|EHT11786.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5246]
          Length = 521

 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 128 HLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQ 187
            ++ LDG  E   Y+ L           SC++C D   AL +L+       K+T I    
Sbjct: 111 QIRDLDGDFEFETYYSL-----------SCHNCPDVVQAL-NLMAVLNPRIKHTAIDGGT 158

Query: 188 HPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKAD--DNAKM 237
               IT RN          G+E       L EI   + +G  +    E  K D  D   +
Sbjct: 159 FQNEITDRNVMGVPAVFMNGQEFGQGRMTLAEIVAKVDTGAEKRAAEELSKRDAYDVLIV 218

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA---DK 294
           G GPS  A             L+G +   F    LD   I NY+ V +  G+K A     
Sbjct: 219 GSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIENYISVPKTEGQKLAGALKA 275

Query: 295 HMPSYAKKIVE 305
           H+  YA  +++
Sbjct: 276 HVSDYAVDVID 286


>gi|395645227|ref|ZP_10433087.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanofollis liminatans DSM 4140]
 gi|395441967|gb|EJG06724.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanofollis liminatans DSM 4140]
          Length = 439

 Score = 42.7 bits (99), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 12/181 (6%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSP-NLNTLALVEAAGVK 60
           L+ G+++  +  + + +  L P P +A+T EE+L A G K    P N+    ++E  G  
Sbjct: 118 LEEGLIDGALVTRMNCNKPLEPEPFIAKTREEILEAAGSKYCPVPTNVAIKYILENEG-- 175

Query: 61  RLLFCGVGCQVQALRSVE---HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           +    G+ C +Q +R  E     L    +  LG  C    T    +  L   +  P TV 
Sbjct: 176 KYAVVGLPCHIQGIRKAEAMNKKLQHRIVLHLGLFCAGTKTFLATELLLHKMNINPLTVT 235

Query: 118 HYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPS-----CYSCFDYTNALADLVV 172
             E+          +   + +     +P +D       S     C  C D+T  LAD+  
Sbjct: 236 KIEYRGRGWPGSMSISTSVNDAAII-IPLSDYYSPYFSSFTPWRCILCIDHTAELADISC 294

Query: 173 G 173
           G
Sbjct: 295 G 295


>gi|451946109|ref|YP_007466704.1| coenzyme F420-reducing hydrogenase, beta subunit [Desulfocapsa
           sulfexigens DSM 10523]
 gi|451905457|gb|AGF77051.1| coenzyme F420-reducing hydrogenase, beta subunit [Desulfocapsa
           sulfexigens DSM 10523]
          Length = 461

 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 107/266 (40%), Gaps = 21/266 (7%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L++G V+  V  +   D      P +A + EE+L + G + T+ P   TL  +     K
Sbjct: 133 LLESGEVDGCVVTRMRTDKPWMGEPFIATSREEILTSAGSRYTVIPLNKTLHTIRQQEGK 192

Query: 61  RLLFCGVGCQVQALRSV---EHHLNLEKLYVLGTNCVDNGTREGL--DKFLKAASSEPET 115
             +  G+ C    LR+    +  L      ++GT C   GT E +   + L+  +   ++
Sbjct: 193 YAIV-GLPCHNHGLRNAMAQDEVLAARIKVIIGTFC--GGTLEPVVVPELLRTKNIPLDS 249

Query: 116 VLHYEFM------QDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPS-CYSCFDYTNALA 168
           + ++EF       Q   V        +    Y     N L+ +  P  C  C+D +N  A
Sbjct: 250 ITNFEFRGGAWPGQMRAVFKDKPPQAVHYSNYKDGAYNYLIGIYLPRRCQVCYDGSNLFA 309

Query: 169 DLVVGYMGVPKYTGISMTQHPQYITVRNERGKEML--SLVKNLLEITPTISSGDRRPFVM 226
           D+ VG       +G         + VR++ GK ++  ++ + +L++         +   M
Sbjct: 310 DIAVGDAWTRDESGKYKYNSQSRVFVRSDLGKRIIKKAVEREVLKLNDVTQDPSYKTHRM 369

Query: 227 ETVKADDNAKMGRGPSQ----PAPKF 248
            T +   NA +     Q    P P++
Sbjct: 370 RTQRKGLNAPLRHARWQKKGIPVPQY 395


>gi|397780732|ref|YP_006545205.1| coenzyme F420 hydrogenase beta subunit [Methanoculleus bourgensis
           MS2]
 gi|396939234|emb|CCJ36489.1| coenzyme F420 hydrogenase beta subunit [Methanoculleus bourgensis
           MS2]
          Length = 339

 Score = 42.7 bits (99), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 31/212 (14%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGV-- 59
           L  G+++AVV V  DP   + P   +  + + ++   G +   S  +  LA ++ A V  
Sbjct: 110 LDEGLIDAVVTVTRDPWT-MKPSSAVITSSDALIQHAGSR--YSWWVPLLASLKEAVVTR 166

Query: 60  --KRLLFCGVGC---QVQALRSVEHHL----NLEKLYVLGTNCVDNGTREGLDKFLKAAS 110
             +R+   GV C     QA+R+ +H L          V+G  C      E  D + K   
Sbjct: 167 KYRRIAVVGVPCVARATQAIRASDHELLRPYAKAIRLVIGLFCT-----ETFD-YAKLVE 220

Query: 111 SEPETVLHYEFMQDYKVHLK-HLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
            + E+    E     ++ +K  LD ++++  +  +P  +L + + P C  C D+T   AD
Sbjct: 221 GKLESERRIEPWDIRRLDIKGKLDVYLQDERHISIPLAELEESVRPGCRVCTDFTAVEAD 280

Query: 170 LVVGYMGVPK-YTGISMTQHPQYITVRNERGK 200
           +  G +G P+ YT          + +RN+ G+
Sbjct: 281 VSAGAVGSPEGYT---------TLVIRNDIGR 303


>gi|336121461|ref|YP_004576236.1| coenzyme F420 hydrogenase [Methanothermococcus okinawensis IH1]
 gi|334855982|gb|AEH06458.1| Coenzyme F420 hydrogenase., Ferredoxin--nitrite reductase
           [Methanothermococcus okinawensis IH1]
          Length = 626

 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 38/215 (17%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 77
           D+   P  ++ +  E++L     K T+S  L+ L      G++++   G+ CQ+  LR +
Sbjct: 114 DECWKPVSLVVQNAEDLLKTTKSKYTVSI-LDALKKAGEMGLEKVAVVGLPCQINGLRKL 172

Query: 78  EHHLNLEKL--------------YVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQ 123
           ++   L K               Y++G  C +    + + + L  A  E +     +F  
Sbjct: 173 QYFPYLAKYDKKECKNKKLPKIEYLIGLFCTEKFEYDNMKEVL--AKHEIDIAKVEKFDV 230

Query: 124 DYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFDYTNALADLVVGYMGVPKYTG 182
                L +++G  +E         DL D+ I   C  C D+   +AD+ VG +G P   G
Sbjct: 231 KGGKLLAYINGEKKEF--------DLKDIEINKGCKICRDFDAEIADVSVGCVGSP--DG 280

Query: 183 ISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 217
            S       + +R E+G+E    +KN +E+   + 
Sbjct: 281 YST------VIIRTEKGEE----IKNAVELKEGVD 305


>gi|432602590|ref|ZP_19838834.1| hypothetical protein A1U5_02433 [Escherichia coli KTE66]
 gi|431141164|gb|ELE42929.1| hypothetical protein A1U5_02433 [Escherichia coli KTE66]
          Length = 399

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 7/178 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT-LSPNLNTLALVEAAGV 59
           +L+  +V+ V+ +  D +D L     +++T  E++   G + +  +P    L ++   G 
Sbjct: 104 LLENKLVDGVIHIGVDSNDPLKNIIKVSKTKAEIVCNAGSRYSPAAPLEKILQIIGENGN 163

Query: 60  KRLLFCGVGCQVQALR---SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           K+  F G  C V ALR   S   H      Y+    C    + EG  + L+    + E +
Sbjct: 164 KKYAFIGKPCDVAALRVFISNNKHYANNIPYIFSFMCAGTPSIEGTYEILRKFHIKKEDL 223

Query: 117 LHYEFMQD-YKVHLKHLDGHIEE--VPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           + + +  D +    K +D H  E  + Y     N L   +   C  C D     AD+V
Sbjct: 224 ISFRYRGDGWPGVTKAVDRHFGEKKMSYNESWGNILGKYLQKRCKICPDGIGEFADIV 281


>gi|268323845|emb|CBH37433.1| coenzyme F420-reducing hydrogenase, subunit beta related
           [uncultured archaeon]
          Length = 371

 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++A V  ++  D      P +A    +++AA G K T  P+++ +      G +
Sbjct: 117 LLEHGDIDAAVVSKTTED--WVAEPFVATKKADIIAAAGSKYTQCPSVSGVGDALEQGYE 174

Query: 61  RLLFCGVGCQVQALRSVEHHLNLE------KLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
            +   G+ C +Q +R V+     +      KL ++G  C +      L   L    +  E
Sbjct: 175 NVALVGLPCHIQGMRKVQQSTGFDVGSDRVKL-LIGLLCSETFDMPMLKNKLLELGTRIE 233

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
            V  +   +   +        ++       P  ++ D +  +C  C+D+    AD+ VG 
Sbjct: 234 DVEKFNIKKGSFIVYTKAGKELK------TPIKNMRDCVREACDYCYDFAAEFADVSVGS 287

Query: 175 MG 176
           +G
Sbjct: 288 IG 289


>gi|150401207|ref|YP_001324973.1| nitrite and sulfite reductase 4Fe-4S region [Methanococcus aeolicus
           Nankai-3]
 gi|150013910|gb|ABR56361.1| nitrite and sulphite reductase 4Fe-4S region [Methanococcus
           aeolicus Nankai-3]
          Length = 618

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 89/217 (41%), Gaps = 39/217 (17%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 77
           D+   P  ++ + PE++  +   K  +S  L  L      G++++   G+ CQ+  LR +
Sbjct: 110 DECWKPVSLIVQNPEDIEKSAKSKYAVS-TLEALREAGEMGIEKVAVVGLPCQIAGLRKL 168

Query: 78  EHHLNLEKL-----------------YVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           ++   L K                  Y++G  C +    + L + L     + E V  ++
Sbjct: 169 QYFPYLAKYDGELGKNGKLAKLPKIEYLIGLLCTEKFEYDKLKEALAKNDIKIEDVKKFD 228

Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
             +   +        I E   + +P  D+   +   C  C D+   +AD+ VG +G P  
Sbjct: 229 IKKGKLII-------ITEDEEYKIPLKDIE--MNAGCKMCRDFDAEMADVSVGCVGSP-- 277

Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 217
            G S       +T+R E+G+E    +KN +E+   + 
Sbjct: 278 DGYST------VTIRTEKGEE----IKNAVELNEGVE 304


>gi|298675109|ref|YP_003726859.1| nitrite and sulfite reductase [Methanohalobium evestigatum Z-7303]
 gi|298288097|gb|ADI74063.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 644

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 97/242 (40%), Gaps = 39/242 (16%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
              G+++  V    +  D   P   +    EE+  ++G K +  P ++ L  V    ++ 
Sbjct: 118 FDNGLIDGAV----NTADFTKPSSRIVTNKEELQESQGSKYSALPVMSALRQVNDE-LEN 172

Query: 62  LLFCGVGCQVQALRSVEHH--LNLEKL---------------YVLGTNCVDNGTREGLDK 104
           +   G+ CQV   R  +    LN+  L               YV+G  C++N   + L  
Sbjct: 173 VAMVGLPCQVYGTRRTQFFKGLNVHPLEIGTDGEKANIPNIPYVIGLFCMENFNYDKLSG 232

Query: 105 FLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYT 164
           +L++   +   +  Y    D  + +   +G++E      +   D+ D +   C+ C D  
Sbjct: 233 YLESIGIDLSKIKKYAIRLDEMIIMTD-EGNVE------ISLKDIEDYVWDGCHICRDAV 285

Query: 165 NALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTISSGDRR 222
           + +AD+  G++G    TG +       +  RN +G E+L   +    LE +  +   D  
Sbjct: 286 SKVADISAGHVGSS--TGWTT------LIARNAKGLELLEAAEKDGYLETSDKVDVEDIE 337

Query: 223 PF 224
            F
Sbjct: 338 DF 339


>gi|297619953|ref|YP_003708058.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Methanococcus voltae A3]
 gi|297378930|gb|ADI37085.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus voltae A3]
          Length = 363

 Score = 42.4 bits (98), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 29/213 (13%)

Query: 21  LSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAA---GVKRLLFCGVGCQVQALRS 76
           + P   LA + EEVL + G +   S N+  L AL EA     +KRL   G  C ++++ S
Sbjct: 149 MEPESFLATSKEEVLKSSGSR--YSWNVPILEALREAVYDKKLKRLAIVGTPCVMESINS 206

Query: 77  VEHHLN-----LEKL--YVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHL 129
           + +  N      EK   + +G  C +      L + LK     P  +   E  +   + +
Sbjct: 207 IVNSNNDLLKPFEKAIRFKIGLFCYETMKYGPLIEMLKKEGINPWDIKKMEIGKGKFIVI 266

Query: 130 KHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHP 189
              +G+I+          +L  ++   C  C D+T   +DL VG +G P+  G+S     
Sbjct: 267 LD-NGNIKS-----YKIKELEQIVRTGCKYCKDFTGYPSDLSVGNVGSPE--GVST---- 314

Query: 190 QYITVRNERGKEML--SLVKNLLEITPTISSGD 220
             I +RN  GK +   +++   +E+   + + D
Sbjct: 315 --IIIRNNWGKGLFDKAIINRYIEVKDPVKTED 345


>gi|452211541|ref|YP_007491655.1| Coenzyme F420 hydrogenase beta subunit (FrcB) [Methanosarcina mazei
           Tuc01]
 gi|452101443|gb|AGF98383.1| Coenzyme F420 hydrogenase beta subunit (FrcB) [Methanosarcina mazei
           Tuc01]
          Length = 133

 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
           L+ G+++  + V    D    P+P +A + E++L A+G    +SP ++ L     + G+ 
Sbjct: 41  LEQGIIDGAI-VTGKGDRPWEPKPFVAMSREDILKARGTIYNISPQISWLKEATRSYGLD 99

Query: 61  RLLFCGVGCQVQALRSVEHH 80
           R+   GV CQ+QA+R  + +
Sbjct: 100 RVGVTGVCCQMQAVRKAQLY 119


>gi|374628017|ref|ZP_09700402.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanoplanus limicola DSM 2279]
 gi|373906130|gb|EHQ34234.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanoplanus limicola DSM 2279]
          Length = 338

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 46/239 (19%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK-----PTLSPNLNTLALVEA 56
           L+ G ++AV+ V  D   R  P  V+  + E +L   G +     P L+      AL EA
Sbjct: 112 LERGTIDAVITVSEDGWTR-KPYSVMITSKEAILMKAGSRYNWHVPVLT------ALNEA 164

Query: 57  A-GVK--RLLFCGVGCQVQALRSVEHHLN-LEKLY------VLGTNCVDNGTREGL--DK 104
             G K  ++   G  C VQA R ++   N L K +      ++G  C ++   E L   K
Sbjct: 165 VVGRKYSKIAIVGTPCVVQAARLMKESTNDLVKPFGNAIRLIIGLFCTESFDYERLMEGK 224

Query: 105 FLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYT 164
                + EP  +   +     ++     DG + +     LP  +L   I   C  C D+T
Sbjct: 225 LKTDMNIEPWQIRRMDVKGKLEITT---DGEVVD-----LPLAELDGCIKEGCRICTDFT 276

Query: 165 NALADLVVGYMGVPKYTGISMTQHPQYIT--VRNERGKEMLS--LVKNLLEITPTISSG 219
             ++DL  G +G            P Y T  +RN+ G+  +S  ++   LEI+  I+ G
Sbjct: 277 GLMSDLSAGSVG----------SEPDYTTLVIRNDTGEGFVSNAVMSGKLEISGDINLG 325


>gi|441168662|ref|ZP_20969062.1| coenzyme F420-reducing hydrogenase subunit beta-like protein
           [Streptomyces rimosus subsp. rimosus ATCC 10970]
 gi|440615567|gb|ELQ78752.1| coenzyme F420-reducing hydrogenase subunit beta-like protein
           [Streptomyces rimosus subsp. rimosus ATCC 10970]
          Length = 416

 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 22/224 (9%)

Query: 1   MLKTGM----VEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVE 55
           +L+T M    V AV+ +  D        P + R P E++        L+P L  L  ++ 
Sbjct: 115 LLQTAMRVLGVTAVLSMGRDAGQPWRAAPAVVRDPGELVETAQSTYQLAPYLGALRRIMT 174

Query: 56  AAGVKRLLFCGVGCQVQALRSVEH------HLNLEKLYVLGTNCVDNGTR-EGLDKFLKA 108
                R+   GV C +QA+R ++           EK+ +L      + TR EG    ++ 
Sbjct: 175 EEPDARVAMSGVACHIQAMRKLQAMDTEIGRWAREKVVLLVEPACSSSTRPEGTAAVIRE 234

Query: 109 ASSEP-ETVLHYEFMQ-DY--KVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYT 164
            +  P E+V+   + + +Y   + ++  DG   +V  F     D        C SC D+ 
Sbjct: 235 RARVPVESVVRLRYREGEYPGNIGIRTRDGVDHQV-QFWQAVRDFAGNKTHRCLSCGDWM 293

Query: 165 NALADLVVGYMGVPKYTGISMTQHPQ----YITVRNERGKEMLS 204
           + LAD+ V   G P     S++   Q     + +R   G E ++
Sbjct: 294 SGLADVSVSD-GDPNIFAASVSGEGQAKHGRVFIRTRAGAEAVA 336


>gi|421617458|ref|ZP_16058447.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri KOS6]
 gi|409780613|gb|EKN60240.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Pseudomonas stutzeri KOS6]
          Length = 308

 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 10/211 (4%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+  +V+ V+ +Q+   D L     ++R+ + ++A+ G +   +     L  V A   ++
Sbjct: 10  LEHKLVDGVIQIQASQTDPLENVATISRSRQNIIASSGSRYAPASPGEALKWV-AMSTEK 68

Query: 62  LLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118
            LF G  C V A+R ++ +   L     Y++   C    + +G ++ L     E + V  
Sbjct: 69  YLFIGKPCDVAAVRQMQQYDPRLKDNIPYIVSFMCAGTPSLQGTEQVLDKLEVERKDVTA 128

Query: 119 YEFMQDYKVHLKHL---DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVV--G 173
           + +  D    L      +G    + Y       L   +   C  C D     AD+V   G
Sbjct: 129 FRYRGDGWPGLTKATLNNGDERTMTYNDSWGKVLNRHLQTRCKICPDGIGEFADIVCADG 188

Query: 174 YMGVPK-YTGISMTQHPQYITVRNERGKEML 203
           + G  K Y      +    I VR  +G+++ 
Sbjct: 189 WEGDEKGYPSFEEREGNSLILVRTAKGRDLF 219


>gi|410091293|ref|ZP_11287864.1| glycolate oxidase iron-sulfur subunit [Pseudomonas viridiflava
           UASWS0038]
 gi|409761387|gb|EKN46459.1| glycolate oxidase iron-sulfur subunit [Pseudomonas viridiflava
           UASWS0038]
          Length = 408

 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 20/138 (14%)

Query: 24  RPVLARTPEEVLAAKG-VKPTLSPNLN--TLALVEAAGVKRLLFCGVGCQVQALRSVEHH 80
           RPV  R   +VL  +G V+P LSPN N  T  +++  G+        GC      +V++H
Sbjct: 161 RPV-TRQARQVLMLEGCVQPALSPNTNAATARVLDRLGISVTPISEAGC----CGAVDYH 215

Query: 81  LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY-----EFMQDYKVHLKHLDGH 135
           LN ++  +       +G R  +D +  A  +  ++++        F++DY   L+H   +
Sbjct: 216 LNAQEAGL-------DGARRNIDAWWPAIEAGAQSIVQTASGCGAFVKDYGHLLRHDPTY 268

Query: 136 IEEVPYFCLPANDLVDVI 153
            E+       A DLV+V+
Sbjct: 269 AEKAAQVSAKARDLVEVL 286


>gi|383319626|ref|YP_005380467.1| Coenzyme F420-reducing hydrogenase, beta subunit [Methanocella
           conradii HZ254]
 gi|379320996|gb|AFC99948.1| Coenzyme F420-reducing hydrogenase, beta subunit [Methanocella
           conradii HZ254]
          Length = 341

 Score = 41.6 bits (96), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 23/201 (11%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
           L+  +V+  V +  D  D L+  P +    E +  A G K T +  L  +  +++   ++
Sbjct: 114 LQEELVDRAVVMGVDRWD-LNAYPCIIEDAEGLERAAGSKYTTNGILEAMRGIIKDESIR 172

Query: 61  RLLFCGVGCQVQALRSVEHHLN--LEKL-----YVLGTNCVDNGTREGLDKFLKAASSEP 113
            +   G  C VQA+  +    N   E+L     +++G  C      E  D  L    +  
Sbjct: 173 SVALVGTPCTVQAIGLLRKSSNEYAERLAHKVRFLIGLFCF-----ESFDSSLIPEVARR 227

Query: 114 ETVLHYEFMQ----DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
            +V  +   +    + K+ +    G +       LP + L D + P C+ C D+T+ LAD
Sbjct: 228 LSVPSWRIAKMNAGEGKLTVTLRSGEVRA-----LPLSSLTDFVRPGCFKCNDFTSRLAD 282

Query: 170 LVVGYMGVPKYTGISMTQHPQ 190
           + VG +G    +   + + P+
Sbjct: 283 VSVGSVGSAHGSSALIVRTPE 303


>gi|296282735|ref|ZP_06860733.1| hypothetical protein CbatJ_03899 [Citromicrobium bathyomarinum
           JL354]
          Length = 423

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 42/203 (20%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVL-AAKGVKPTLSPNLNTLALVEAAGV 59
           +L++G ++A +  +      L   PV+A T EE+L AA+ V   ++  L+ L+ +E    
Sbjct: 93  LLQSGRIDAAIVARQGVPAPLEASPVIASTAEEILDAAQSVYIPVA-MLDILSRLEPG-- 149

Query: 60  KRLLFCGVGCQVQALRSVEH--HLNLEKL-YVLGTNCVDNGTREGLDKFLKA---ASSEP 113
           KR     V  Q  ALR ++H  H   +++ YVLG           +D F++A   A S+P
Sbjct: 150 KRYAITLVPEQAAALRRLQHSGHPQAQQIDYVLGPYTGTALYPAAIDSFVRAHGVAKSDP 209

Query: 114 ETVLHY----------------EFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSC 157
            T L +                + ++  KV+   L      +P+F   A+          
Sbjct: 210 VTSLEWRAGEWPGYLEIKTQSGKVLRSKKVYYNFL------IPFFVTRAS---------- 253

Query: 158 YSCFDYTNALADLVVGYMGVPKY 180
               D+ N   DL VG    P +
Sbjct: 254 LQSMDFANEFCDLSVGDAWSPAF 276


>gi|435850524|ref|YP_007312110.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanomethylovorans hollandica DSM 15978]
 gi|433661154|gb|AGB48580.1| coenzyme F420-reducing hydrogenase, beta subunit
           [Methanomethylovorans hollandica DSM 15978]
          Length = 340

 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 19/188 (10%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVK-PTLSPNLNTLA-LVEAAGV 59
           L+ GM++AVV V+ DP   L P   +  + + ++   G +     P +++L   V     
Sbjct: 109 LEQGMIDAVVTVEEDPW-TLKPSSTVITSEDVLINQAGSRYNWWVPLVSSLKEAVITRKY 167

Query: 60  KRLLFCGVGCQVQALRSV---EHHL----NLEKLYVLGTNCVDNGTREGL--DKFLKAAS 110
           +++   GV C VQA+R +   +H L          V+G  C +    E L  +K ++  S
Sbjct: 168 RKVAVVGVPCVVQAVRKMLDSDHDLLRPFRRSIRLVVGLFCTETFDYEKLVEEKLIRERS 227

Query: 111 SEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADL 170
            EP  ++ ++     ++ +K  DG +  +P       D+ D + P C  C D+T   +DL
Sbjct: 228 IEPLDMIRFDVKGKLEITMK--DGSLTMIPL-----KDVDDCVRPGCRVCTDFTAIYSDL 280

Query: 171 VVGYMGVP 178
             G +G P
Sbjct: 281 SAGSVGSP 288


>gi|294496614|ref|YP_003543107.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292667613|gb|ADE37462.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 387

 Score = 41.6 bits (96), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 77/195 (39%), Gaps = 25/195 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++  V      D    P  ++A    +VL + G   + S  +  L      G++ 
Sbjct: 151 LEEGLIDCAVVTTQSKDQPWKPVAIIAEDRAQVLESSGSMYSHSMTMEQLMQAIQQGMRS 210

Query: 62  LLFCGVGCQVQALRSVE-------HHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPE 114
           + F G  C + A+  ++       H      +  LG  C+D  + EG+ +F++       
Sbjct: 211 IAFVGPSCNIDAVHKMQRSPYGFLHLFMRANVLRLGLFCMDTFSYEGIREFVEN------ 264

Query: 115 TVLHYEFMQDYKVHLKHLDGHIE-----EVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
              H   + D +  +K   G  E     ++  F L   D  +  + SC  C D     +D
Sbjct: 265 ---HGMRLADIEA-MKIRKGKFEFEQAGQISRFSLSEFD--EYRSSSCKFCTDMAAENSD 318

Query: 170 LVVGYMGVPK-YTGI 183
           +  G +G P  YT +
Sbjct: 319 ISFGGVGTPDGYTTV 333


>gi|52549383|gb|AAU83232.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27A8]
          Length = 642

 Score = 41.6 bits (96), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 42/236 (17%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           +  G+++ V+       D   P   + R+ EE+L + G K +  P L+  A+ +A  +  
Sbjct: 119 MDNGLIDGVIAT----GDAGKPSSRVVRSKEELLDSAGSKYSAIPVLS--AIKDAGDITN 172

Query: 62  LLFCGVGCQVQALRSVE-------HHL----NLEKL------YVLGTNCVDNGTREGLDK 104
               G+ C V  +R  +       H      N EK+      YV+G  C +N   + L K
Sbjct: 173 AAVVGLPCHVYGVRKTQFFPGMMSHGFEVGENGEKIKVPNIAYVIGLFCTENFNYDKLAK 232

Query: 105 FLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDL--VDVIAPSCYSCFD 162
           F++      E  +    ++   +HL  L    +   +     NDL     +   C  C D
Sbjct: 233 FMQ------EKGVDLSEVRRAAIHLDELVVTTDSGEHG-FDLNDLWHAGCVQDGCVICRD 285

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTI 216
             + L+D+  G+MG  K     M         R ++G E++   +    +E  P I
Sbjct: 286 AVSKLSDISAGFMGSGKGWTTLMG--------RTQKGVELIKAAEEAGYIETNPDI 333


>gi|336249238|ref|YP_004592948.1| alkyl hydroperoxide reductase subunit F [Enterobacter aerogenes
           KCTC 2190]
 gi|334735294|gb|AEG97669.1| alkyl hydroperoxide reductase subunit F [Enterobacter aerogenes
           KCTC 2190]
          Length = 521

 Score = 41.2 bits (95), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 128 HLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQ 187
            +++LDG  E   Y+ L           SC++C D   AL +L+       K+T I    
Sbjct: 111 QIRNLDGDFEFETYYSL-----------SCHNCPDVVQAL-NLMAVLNPRIKHTAIDGGT 158

Query: 188 HPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKAD--DNAKM 237
               IT RN          G+E       L EI   + +G  +    E  K D  D   +
Sbjct: 159 FQNEITDRNVMGVPAVFVNGQEFGQGRMTLTEIVAKVDTGAEKRAAEELNKRDAYDALIV 218

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA---DK 294
           G GPS  A             L+G +   F    LD   I NY+ V +  G+K A     
Sbjct: 219 GSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIENYISVPKTEGQKLAGALKA 275

Query: 295 HMPSYAKKIVE 305
           H+  Y   +++
Sbjct: 276 HVSEYDVDVID 286


>gi|20093010|ref|NP_619085.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans
           C2A]
 gi|19918329|gb|AAM07565.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans
           C2A]
          Length = 345

 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 23/190 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L TG+V+AVV V  DP   L PR ++  + E ++   G +      L  ++ ++ A VKR
Sbjct: 115 LDTGLVDAVVTVTEDPW-TLKPRSMVITSSEVLVGQAGSRYNWWVPL--VSSLKEAVVKR 171

Query: 62  ----LLFCGVGCQVQALRSV---EHHL----NLEKLYVLGTNCVDNGTREGL--DKFLKA 108
               +   GV C VQA+R +   +H L         +V+G  C ++   E L   K    
Sbjct: 172 KYRNVAVVGVPCVVQAVRKMLESDHQLISPYKKSIRFVIGLFCTESFDYEKLIAGKLKSE 231

Query: 109 ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALA 168
            + EP  V   +     ++ L   DG       + +P  +L D + P C  C D+T   A
Sbjct: 232 YALEPMKVCRIDVKGKLEITLN--DGT-----QYVIPLAELEDTVRPGCAVCTDFTALTA 284

Query: 169 DLVVGYMGVP 178
           D+  G +G P
Sbjct: 285 DISAGAVGSP 294


>gi|282164844|ref|YP_003357229.1| putative coenzyme F420 hydrogenase subunit beta [Methanocella
           paludicola SANAE]
 gi|282157158|dbj|BAI62246.1| putative coenzyme F420 hydrogenase subunit beta [Methanocella
           paludicola SANAE]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 144 LPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQ 190
           LP + L + + P C  C D+T+ LAD+ VG +G    + + +T+ P+
Sbjct: 257 LPLSSLAEFVKPGCRKCNDFTSKLADISVGSVGSAAGSSVVITRTPE 303


>gi|257052402|ref|YP_003130235.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halorhabdus utahensis DSM 12940]
 gi|256691165|gb|ACV11502.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halorhabdus utahensis DSM 12940]
          Length = 498

 Score = 40.8 bits (94), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 43/235 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL--------- 51
           +L+ G ++  +      +D       LA +PEE +   G   T +  L  L         
Sbjct: 226 LLEAGEIDGALIATESDEDPWKAEAFLATSPEECIENAGSIYTQTMALGNLDLQQWDHKI 285

Query: 52  -ALVEAAGVKRLLFCGVGCQVQALRSVE--------HHLNLEKL-YVLGTNCVDNGTREG 101
             L+E A    L   G  C+++ +R+++        H   +  + Y +   C  N   E 
Sbjct: 286 DGLIEDA---SLALVGTPCEIEGIRALQDFEWEYGSHEEGVRAIDYAIALMCTKNFNYER 342

Query: 102 L--DKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHI---EEVPYFCLPANDLVDVIAPS 156
           L  ++ ++    + + V   + + D K+ +   DG +   E+V  F        D     
Sbjct: 343 LMGEQLVEQRDIDLDNVGKMDVL-DGKMMVYDRDGELIVDEDVENF-------HDAALKG 394

Query: 157 CYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLE 211
           C  C D+T   ADL VG +G         +     + VR E G +  +L K+ L+
Sbjct: 395 CDECADFTGYCADLTVGSVG--------SSDEYSSVIVRTEAGLDAWNLTKDDLD 441


>gi|421726096|ref|ZP_16165273.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca M5al]
 gi|410373063|gb|EKP27767.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca M5al]
          Length = 521

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 37/209 (17%)

Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
           S E +T+L           ++++DG  E   Y+ L           SC++C D   AL +
Sbjct: 102 SKEAQTLLE---------QIRNIDGDFEFETYYSL-----------SCHNCPDVVQAL-N 140

Query: 170 LVVGYMGVPKYTGISMTQHPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDR 221
           L+       K+T I    +   IT RN          GKE       L EI   + +G  
Sbjct: 141 LMAVLNPRIKHTAIDGGTYQNEITERNVMGVPAVFMNGKEFGQGRMTLTEIVAKVDTGAE 200

Query: 222 RPFVMETVK--ADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRN 279
           +    E  K  A D   +G GPS  A             L+G +   F    LD   I N
Sbjct: 201 KRAAEELNKREAYDVLIVGSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIEN 257

Query: 280 YLHVNRAWGKKRA---DKHMPSYAKKIVE 305
           Y+ V +  G+K A     H+  Y   +++
Sbjct: 258 YISVPKTEGQKLAGALKAHVSEYDVDVID 286


>gi|375259622|ref|YP_005018792.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca KCTC
           1686]
 gi|397656690|ref|YP_006497392.1| alkyl hydroperoxide reductase protein F [Klebsiella oxytoca E718]
 gi|402839691|ref|ZP_10888175.1| alkyl hydroperoxide reductase, F subunit [Klebsiella sp. OBRC7]
 gi|423101878|ref|ZP_17089580.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5242]
 gi|365909100|gb|AEX04553.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca KCTC
           1686]
 gi|376390704|gb|EHT03387.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5242]
 gi|394345246|gb|AFN31367.1| Alkyl hydroperoxide reductase protein F [Klebsiella oxytoca E718]
 gi|402287617|gb|EJU36056.1| alkyl hydroperoxide reductase, F subunit [Klebsiella sp. OBRC7]
          Length = 521

 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 37/209 (17%)

Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALAD 169
           S E +T+L           ++++DG  E   Y+ L           SC++C D   AL +
Sbjct: 102 SKEAQTLLE---------QIRNIDGDFEFETYYSL-----------SCHNCPDVVQAL-N 140

Query: 170 LVVGYMGVPKYTGISMTQHPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDR 221
           L+       K+T I    +   IT RN          GKE       L EI   + +G  
Sbjct: 141 LMAVLNPRIKHTAIDGGTYQNEITERNVMGVPAVFMNGKEFGQGRMTLTEIVAKVDTGAE 200

Query: 222 RPFVMETVK--ADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRN 279
           +    E  K  A D   +G GPS  A             L+G +   F    LD   I N
Sbjct: 201 KRAAEELNKREAYDVLIVGSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIEN 257

Query: 280 YLHVNRAWGKKRA---DKHMPSYAKKIVE 305
           Y+ V +  G+K A     H+  Y   +++
Sbjct: 258 YISVPKTEGQKLAGALKAHVSEYDVDVID 286


>gi|262163802|ref|ZP_06031542.1| coenzyme F420-dependent oxidoreductase [Vibrio mimicus VM223]
 gi|262027782|gb|EEY46447.1| coenzyme F420-dependent oxidoreductase [Vibrio mimicus VM223]
          Length = 400

 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 23/185 (12%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT-LSPNLNTLALVEAAGVK 60
           L++ +V+ VV + SD ++ +     +++   +++ + G + +  SP +N + +++    K
Sbjct: 106 LESKLVDLVVQIASDKNNPIENIVKISKNKNDLIESTGSRYSPASPLINIVQIIKKNPNK 165

Query: 61  RLLFCGVGCQVQALR---SVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVL 117
           ++ F G  C   ALR   S++  +    + ++   C    +R G+ K L +        L
Sbjct: 166 KIAFVGKPCDCVALRNLMSIDDEVKKSIILIVSFFCAGTPSRNGVKKVLDS--------L 217

Query: 118 HYE---FMQDYKVHLKHLDGH--------IEEVPYFCLPANDLVDVIAPSCYSCFDYTNA 166
           HY+    + D+    K   G         I  + Y     N L   I   C  C D T  
Sbjct: 218 HYDNKKRVTDFYYRGKGWPGKTTLIQGRSINSMDYSESWGNLLGPTIQSRCKLCADGTGE 277

Query: 167 LADLV 171
           +AD+V
Sbjct: 278 VADIV 282


>gi|423128049|ref|ZP_17115728.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5250]
 gi|376395088|gb|EHT07738.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5250]
          Length = 521

 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 73/191 (38%), Gaps = 28/191 (14%)

Query: 128 HLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQ 187
            ++++DG  E   Y+ L           SC++C D   AL +L+       K+T I    
Sbjct: 111 QIRNIDGDFEFETYYSL-----------SCHNCPDVVQAL-NLMAVLNPRIKHTAIDGGT 158

Query: 188 HPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDRRPFVMETVK--ADDNAKM 237
           +   IT RN          GKE       L EI   + +G  +    E  K  A D   +
Sbjct: 159 YQNEITERNVMGVPAVFMNGKEFGQGRMTLTEIVAKVDTGAEKRAAEELNKREAYDVLIV 218

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA---DK 294
           G GPS  A             L+G +   F    LD   I NY+ V +  G+K A     
Sbjct: 219 GSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIENYISVPKTEGQKLAGALKA 275

Query: 295 HMPSYAKKIVE 305
           H+  Y   +++
Sbjct: 276 HVSEYDVDVID 286


>gi|444352612|ref|YP_007388756.1| Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) [Enterobacter
           aerogenes EA1509E]
 gi|443903442|emb|CCG31216.1| Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) [Enterobacter
           aerogenes EA1509E]
          Length = 521

 Score = 40.4 bits (93), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 128 HLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQ 187
            +++LDG  E   Y+ L           SC++C D   AL +L+       K+T I    
Sbjct: 111 QIRNLDGDFEFETYYSL-----------SCHNCPDVVQAL-NLMAVLNPRIKHTAIDGGT 158

Query: 188 HPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKAD--DNAKM 237
               IT RN          G+E       L EI   + +G  +    E  K D  D   +
Sbjct: 159 FQNEITDRNVMGVPAVFVNGQEFGQGRMTLTEIVAKVDTGAEKRAAEELNKRDAYDVLIV 218

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA---DK 294
           G GPS  A             L+G +   F    LD   I NY+ V +  G+K A     
Sbjct: 219 GSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIENYISVPKTEGQKLAGALKA 275

Query: 295 HMPSYAKKIVE 305
           H+  Y   +++
Sbjct: 276 HVSEYDVDVID 286


>gi|423107294|ref|ZP_17094989.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5243]
 gi|423113172|ref|ZP_17100863.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5245]
 gi|376389420|gb|EHT02112.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5243]
 gi|376389714|gb|EHT02404.1| alkyl hydroperoxide reductase subunit F [Klebsiella oxytoca
           10-5245]
          Length = 521

 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 28/191 (14%)

Query: 128 HLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQ 187
            ++++DG  E   Y+ L           SC++C D   AL +L+       K+T I    
Sbjct: 111 QIRNIDGDFEFETYYSL-----------SCHNCPDVVQAL-NLMAVLNPRIKHTAIDGGT 158

Query: 188 HPQYITVRN--------ERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKAD--DNAKM 237
           +   IT RN          GKE       L EI   + +G  +    E  K +  D   +
Sbjct: 159 YQNEITERNVMGVPAVFMNGKEFGQGRMTLTEIVAKVDTGAEKRAAEELNKRESYDVLIV 218

Query: 238 GRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRA---DK 294
           G GPS  A             L+G +   F    LD   I NY+ V +  G+K A     
Sbjct: 219 GSGPSGAAAAVYSARKGIRTGLMGER---FGGQVLDTVDIENYISVPKTEGQKLAGALKA 275

Query: 295 HMPSYAKKIVE 305
           H+  Y   +++
Sbjct: 276 HVSEYDVDVID 286


>gi|298674635|ref|YP_003726385.1| nitrite and sulfite reductase [Methanohalobium evestigatum Z-7303]
 gi|298287623|gb|ADI73589.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 623

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 93/234 (39%), Gaps = 40/234 (17%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L    +E  + V    D+   P  ++ +  + ++     K T+S  L+ L      G++
Sbjct: 97  LLDNEKIEGAIVV---GDECWKPVSMVVKDEKGLMDTAKSKYTIS-TLDALRDAGEMGLE 152

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK-----------------LYVLGTNCVDNGTREGLD 103
            +   G+ CQ+  LR +++   L K                  Y++G  C +    + L 
Sbjct: 153 NVAVVGLPCQINGLRKLQYFEYLAKHGEELGSNGKPANLPDIQYLIGLFCTEKFEYDSLK 212

Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDY 163
             L+  + + E V  ++ ++   V   +      ++P       D +D I P C  C D+
Sbjct: 213 NILQKYNVDIENVEKFDILKGKLVAYSNKKNASVKIPL------DEID-ITPGCRVCRDF 265

Query: 164 TNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 217
              +AD+ VG  G         +     + VR E+G +    +KN +E+   I+
Sbjct: 266 DANMADVSVGSAG--------SSDGYSTVVVRTEKGDD----IKNAIELHDEIN 307


>gi|448406549|ref|ZP_21573003.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halosimplex carlsbadense 2-9-1]
 gi|445677120|gb|ELZ29623.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Halosimplex carlsbadense 2-9-1]
          Length = 551

 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 91/235 (38%), Gaps = 43/235 (18%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL------- 53
           +L+ G ++  +      DD       LA TPEE +   G     +  L TL L       
Sbjct: 279 LLEAGEIDGALIATESDDDPWKAEAFLATTPEECIDNAGSVYNQTMALGTLDLERWDHKL 338

Query: 54  ---VEAAGVKRLLFCGVGCQVQALRSVE--------HHLNLEKL-YVLGTNCVDNGTREG 101
              +E A    L   G  C+++ +R++E            +  + Y +   C  N   E 
Sbjct: 339 DVPIEEAS---LALVGTPCEIEGIRALEDFEWEYGSQEAGVRAIDYRIALMCTKNFNYER 395

Query: 102 L--DKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHI---EEVPYFCLPANDLVDVIAPS 156
           L  ++ ++    + + V   + + D K+ +   +G +   E+V +F        D     
Sbjct: 396 LMGEQLVEQRDVDLDDVGKMDVL-DGKMLVYDREGELIVDEDVEHF-------HDAALKG 447

Query: 157 CYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLE 211
           C  C D+T   ADL VG +G         +     + VR E+G +  +L K  L+
Sbjct: 448 CDECADFTGYCADLTVGSVG--------SSDEYSSVIVRTEQGLDAWNLTKGDLD 494


>gi|218780822|ref|YP_002432140.1| coenzyme F420 hydrogenase [Desulfatibacillum alkenivorans AK-01]
 gi|218762206|gb|ACL04672.1| Putative coenzyme F420 hydrogenase, beta subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 371

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)

Query: 13  VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQ 72
           V +D + R+ P+P L RT E+     G K + SP L+ L      GV+ +      CQ  
Sbjct: 123 VLTDSEGRM-PKPRLVRTSEQARDCAGSKYSASPTLSVLNREAKRGVRNMGVVATPCQAL 181

Query: 73  ALRSVEHHLNLEKLY------VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYK 126
           A+  ++ +   +  +      V+G  C        L+  L     E + +         +
Sbjct: 182 AISQMKMNPTDKPDFEDPVSLVIGLFCTWALDARKLEALLAEKGIEGKIIKADVPPPPAE 241

Query: 127 VHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMT 186
           V +   D    E+P      +++ ++I   C  C D T+ LAD+ VG   V    G +  
Sbjct: 242 VFVVETDQGTVEIPL-----SEVREIIPEGCSICPDMTSELADVSVGQ--VEGEAGFNT- 293

Query: 187 QHPQYITVRNERGKEML 203
                + +R ++G E++
Sbjct: 294 -----LIIRTQKGAELV 305


>gi|395645325|ref|ZP_10433185.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanofollis liminatans DSM 4140]
 gi|395442065|gb|EJG06822.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanofollis liminatans DSM 4140]
          Length = 433

 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 31/212 (14%)

Query: 7   VEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCG 66
           +E  +    +P+ +  P+ V A +  E++ A G     S  + T+  +E +  K      
Sbjct: 115 IEGAIVNNLNPETK-RPQAVFASSMSEIIEASGSYYAQSSVVKTI--LEHSDKKSAAVV- 170

Query: 67  VGCQVQALRSVEH---HLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQ 123
           +GCQ ++L+ +     ++NL   Y +G  C    + + +D  ++ +  + E +  + F  
Sbjct: 171 LGCQAESLQLIREKYPNINL-PTYTIGLVCAGQYSGDMIDDLIEQSGCDGEKISEFRFRD 229

Query: 124 DY-----KVHLKHLDGHIEEVPYFCLPA---NDLVDVIA-PSCYSCFDYTNALADLVVGY 174
                   VH+K   G       + LP    + L  V     C  C+D  N   D+V G 
Sbjct: 230 KRVGWPGDVHVKTPSGD------YWLPKERRHSLKQVYELHRCMVCYDQMNIFCDIVCG- 282

Query: 175 MGVPKYTGISMTQHPQYITV---RNERGKEML 203
                  GIS  Q+P+  TV   R  +GK++L
Sbjct: 283 ----DPWGISHKQNPEGYTVVIARTTKGKKIL 310


>gi|399890006|ref|ZP_10775883.1| related to F420H2-dehydrogenase, beta subunit [Clostridium arbusti
           SL206]
          Length = 389

 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 18/170 (10%)

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPET-VLH 118
           K +LF G  CQV AL +  +H N + LY     C    +    +K+LK      ++ ++ 
Sbjct: 155 KFVLFTGTPCQVNALYNFLNH-NYDNLYTCDVICHGVPSPLVFNKYLKYMEDNKDSKIVK 213

Query: 119 YEF------MQDYKVHLKHLDGH-----IEEVPYFCLPANDLVDVIAPSCYSCFDYT-NA 166
           Y F       + Y + +++ D +       E  Y     +DL   +  SCY+C   T N 
Sbjct: 214 YNFRDKTFGWKKYNIKIQYEDNNSTLTKFNEDIYMKGFLSDL--YLRNSCYNCKCKTDNV 271

Query: 167 LADLVVG-YMGVP-KYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITP 214
           ++D+ +G + G+  KY  I   +    + +   +G++++ ++K+ + + P
Sbjct: 272 MSDITIGDFWGIENKYPEIDDDKGMAAVIINTTKGRKIIDILKDNIFMQP 321


>gi|251736475|gb|ABV95846.2| coenzyme F420 hydrogenase/dehydrogenase, beta subunit
           [Dinoroseobacter shibae DFL 12]
          Length = 433

 Score = 39.7 bits (91), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 7/178 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGV 59
           +L+TG V+ V+   + P   +    VL+   E VLAA G +   S  L  L A + A+  
Sbjct: 123 LLETGAVDGVIQTAAAPQLSIGNGTVLSTRSEGVLAAAGSRYAPSAPLEGLHARLTASPA 182

Query: 60  KRLLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           +R  F G  C V ALR+++     L      +L   C    +  G  + L A  +  +  
Sbjct: 183 QRFAFVGKPCDVAALRALQEQDPGLAARVPVLLSFFCAGVPSLRGGLEVLAALEAPYQDT 242

Query: 117 LHYEFMQDYK---VHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           + + +  +           DG   ++ Y       L   +   C  C D T   ADLV
Sbjct: 243 VAFRYRGNGWPGYATATLADGTTRQMSYHDSWGRILSRHVQHRCKICADGTGTAADLV 300


>gi|432330628|ref|YP_007248771.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanoregula
           formicicum SMSP]
 gi|432137337|gb|AGB02264.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanoregula
           formicicum SMSP]
          Length = 340

 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 25/209 (11%)

Query: 5   GMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS-PNLNTL--ALVEAAGVKR 61
           G+++AVV V  D    L P   +    E +++  G + +   P L  L  A+VE    +R
Sbjct: 113 GLIDAVVTVSED-RFTLKPSSAIITKSEALISVAGSRYSWWVPLLAALKTAVVEKK-YRR 170

Query: 62  LLFCGVGCQVQALRSVEHHLN-LEKLY------VLGTNCVDNGTREGLDKFLKAASSEPE 114
           +   GV C VQAL  +    N L + Y      V+G  C ++     L        ++ E
Sbjct: 171 IAVVGVPCAVQALGKIRTSDNDLLRPYAKAIRLVIGLFCTESFDYSSLIHTQLQVRNKIE 230

Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
                +     K+ ++  DG    +P   LP  +L   I   C+SC D+T   AD+  G 
Sbjct: 231 PFQIKKLDVKGKLTIEKTDGSSTSIP---LP--ELEACIRKGCHSCTDFTALDADISAGS 285

Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEML 203
           +G P      MT       +RN  GK  +
Sbjct: 286 VGSPA----GMTT----FLIRNTTGKAFV 306


>gi|404482742|ref|ZP_11017967.1| hypothetical protein HMPREF1135_01027 [Clostridiales bacterium
           OBRC5-5]
 gi|404343832|gb|EJZ70191.1| hypothetical protein HMPREF1135_01027 [Clostridiales bacterium
           OBRC5-5]
          Length = 382

 Score = 39.3 bits (90), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 23/213 (10%)

Query: 18  DDRLSPRPVL---ARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQAL 74
           D++L P+ ++   ++  E+++ +K VK  L+  ++ +  + A+  K +LF GV CQV A+
Sbjct: 107 DEKLMPKHIVTNDSKVCEDMMGSKYVKSDLNECISKIKQIIASD-KIVLFSGVPCQVAAV 165

Query: 75  RSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQD---------Y 125
           +     +  +KL  L   C     R    K+L       E+ +   FM+D          
Sbjct: 166 KKC---IKSDKLITLAVVCHGTIERNIWKKYLDEEEKINESSIVEVFMRDKTKGYLNYGL 222

Query: 126 KVHLKHLDGHI---EEVPYFCLPANDLVDVIAPSCYSC-FDYTNALADLVVG-YMGVPKY 180
           K   K+   HI   +   YF     D +      C SC +   N ++DL+VG   G+ K 
Sbjct: 223 KFRFKNGTEHITFRKNDGYFLKCFTDGL-FERDRCLSCTYKGNNIMSDLLVGDAWGMEKI 281

Query: 181 TGISMTQ-HPQYITVRNERGKEMLSLVKNLLEI 212
               M +     + V  E+G+ + + +K+   +
Sbjct: 282 FPQFMDKLGASAVLVLTEKGRYIFNEIKDSFSV 314


>gi|159046658|ref|YP_001542327.1| hypothetical protein Dshi_4135 [Dinoroseobacter shibae DFL 12]
          Length = 440

 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 7/178 (3%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGV 59
           +L+TG V+ V+   + P   +    VL+   E VLAA G +   S  L  L A + A+  
Sbjct: 130 LLETGAVDGVIQTAAAPQLSIGNGTVLSTRSEGVLAAAGSRYAPSAPLEGLHARLTASPA 189

Query: 60  KRLLFCGVGCQVQALRSVEHH---LNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETV 116
           +R  F G  C V ALR+++     L      +L   C    +  G  + L A  +  +  
Sbjct: 190 QRFAFVGKPCDVAALRALQEQDPGLAARVPVLLSFFCAGVPSLRGGLEVLAALEAPYQDT 249

Query: 117 LHYEFMQDYK---VHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           + + +  +           DG   ++ Y       L   +   C  C D T   ADLV
Sbjct: 250 VAFRYRGNGWPGYATATLADGTTRQMSYHDSWGRILSRHVQHRCKICADGTGTAADLV 307


>gi|336436572|ref|ZP_08616284.1| hypothetical protein HMPREF0988_01869 [Lachnospiraceae bacterium
           1_4_56FAA]
 gi|336007437|gb|EGN37462.1| hypothetical protein HMPREF0988_01869 [Lachnospiraceae bacterium
           1_4_56FAA]
          Length = 970

 Score = 39.3 bits (90), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 25/162 (15%)

Query: 60  KRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKF-LKAASSEPETVLH 118
           K +LF G+ C + AL S       + LY +   C    +++  DKF       +  T L 
Sbjct: 705 KLVLFTGLPCHIAALYSCLGGRKYKNLYTIDLVCHGITSQKVFDKFHADVLEGKKLTDLQ 764

Query: 119 YEFMQDYKVH----LKHLDGH-----IEEVPYF-----CLPANDLVDVIAPSCYSC-FDY 163
           ++  Q +  H     K  DG      +E  PYF     C+  N        +C  C F+ 
Sbjct: 765 FKAKQPWGWHAGTNAKFEDGTSYSVPLERCPYFIAYLKCISKN-------TTCGECQFNK 817

Query: 164 TNALADLVVG-YMGVPKYTGISMTQH-PQYITVRNERGKEML 203
               ADL +G + G+ KY      Q     I V +ERG E+L
Sbjct: 818 LPRQADLSIGDFWGINKYNAEYNDQKGTSEILVNSERGAELL 859


>gi|150401725|ref|YP_001325491.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus
           aeolicus Nankai-3]
 gi|150014428|gb|ABR56879.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus aeolicus Nankai-3]
          Length = 357

 Score = 38.9 bits (89), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 24/204 (11%)

Query: 5   GMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS-PNLNTLA-LVEAAGVKRL 62
           G+++  + +  D    + P+  LA + EEVL + G +   + P L  L   V    +K++
Sbjct: 132 GLIDGAIVMMEDKW-TMEPQSYLATSKEEVLKSAGSRYNWNVPILRALKDAVMVKKLKKI 190

Query: 63  LFCGVGCQVQALRSVEHHLN-LEKLYV------LGTNCVDNGTREGLDKFLKAASSEPET 115
              G  C + A+  +    N L K +       +G  C +    E + +  +  +  P  
Sbjct: 191 AIVGTPCVMNAVHQIMASDNDLLKPFKDTIRLKIGLFCFETYNYEKMMEIFEKNNINPWD 250

Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
           V   + ++  K+ +K  DG   EV  F L  +++ D +   C  C D++  +ADL VG +
Sbjct: 251 VRKMD-IEKGKLLIKLRDG---EVIKFKL--DEVEDAMRAGCKVCGDFSGIVADLSVGNV 304

Query: 176 GVPKYTGISMTQHPQYITVRNERG 199
           G P         +   I +RN+ G
Sbjct: 305 GAP--------SNYSTILIRNDWG 320


>gi|302342322|ref|YP_003806851.1| coenzyme F420 hydrogenase [Desulfarculus baarsii DSM 2075]
 gi|301638935|gb|ADK84257.1| Coenzyme F420 hydrogenase [Desulfarculus baarsii DSM 2075]
          Length = 360

 Score = 38.9 bits (89), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 31/217 (14%)

Query: 2   LKTGMV-EAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL--ALVEAAG 58
           L  G+V EAVV   +  D R +P+ V  R  ++VLAA G +      L+ L  AL E A 
Sbjct: 125 LDEGVVGEAVV---TKADQRGAPQGVRVRRRDQVLAAAGSRYAAGAGLSALNQALAETAS 181

Query: 59  VKRLLFCGVGCQVQALRSVEHHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEP 113
              L    + CQ  A  S+  H    +       V+G  C  N +  GL   L+ A    
Sbjct: 182 -HPLAVVALPCQALAAASMSAHPGYPQAASRLKLVIGLFCTLNLSARGLRALLEQAGVA- 239

Query: 114 ETVLHYEFMQDYK--VHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLV 171
           + VL  +F         + +  G  E      +P   +   +   C  C D T  LAD+ 
Sbjct: 240 QPVLRADFPPPPAGVFQVTNAAGMAE------IPLEQVHQAVLKGCGLCPDLTAELADVA 293

Query: 172 VGYM-GVPKYTGISMTQHPQYITVRNERGKEMLSLVK 207
           VG + G P +           +  R   G E++ L +
Sbjct: 294 VGAVEGRPGWN---------TVLARTPAGLELVELAR 321


>gi|374635603|ref|ZP_09707198.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanotorris formicicus Mc-S-70]
 gi|373561669|gb|EHP87898.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanotorris formicicus Mc-S-70]
          Length = 356

 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 36/214 (16%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLS-PNLNTLALVEAAGVK 60
           L  G+++  + V  D    + P+ VL  T EE++   G +   + P L   AL EA  VK
Sbjct: 128 LDEGLIDGAIVVSED-RWTMEPKSVLVTTKEELIKVAGSRYNWNVPILE--ALKEAVMVK 184

Query: 61  RL---LFCGVGCQVQA-----------LRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFL 106
           +L      G  C + A           L+  +  + L+    +G  C +      L   +
Sbjct: 185 KLEKLAIVGTPCVINAVFQILASDNDLLKPFKKAIRLK----IGLFCTETFKYSELTAKI 240

Query: 107 KAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNA 166
           K     P  +   E  +  K+ +  L+G  +E+        ++   I   C  C D+T  
Sbjct: 241 KDMGINPWEIKKMEIRKG-KLAIDLLNGETKEISL-----KEIEHCIRKGCSICRDFTAL 294

Query: 167 LADLVVGYMGVPKYTGISMTQHPQYITVRNERGK 200
            +D+  G +G P+  G++       + VRNE GK
Sbjct: 295 ASDISAGNVGTPE--GVTT------LIVRNEWGK 320


>gi|333987083|ref|YP_004519690.1| coenzyme F420 hydrogenase [Methanobacterium sp. SWAN-1]
 gi|333825227|gb|AEG17889.1| Coenzyme F420 hydrogenase., Hydrogensulfite reductase
           [Methanobacterium sp. SWAN-1]
          Length = 686

 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 45/222 (20%)

Query: 18  DDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSV 77
           D+   P  ++ +  E++L     K ++S  L  L      G++++    + CQ+  LR +
Sbjct: 179 DEHWKPVSLIVQDAEDLLQTSKSKYSIS-TLEALKTAGEMGLQKVAVVALPCQINGLRKL 237

Query: 78  EHHLNLEK-----------------LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
           ++   L K                  Y++G  C +      + + LK  S   +    + 
Sbjct: 238 QYFPYLAKHEEELGKSGKPAKLPKIEYLIGLFCTEKFDYGNIKEILKDNSINIKDAEKF- 296

Query: 121 FMQDYKVH--LKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFDYTNALADLVVGYMGV 177
              D K+   L +++G  +++        DL  + +   C  C D+   LAD+ +G  G 
Sbjct: 297 ---DVKMGKLLVYVNGEEKKI--------DLKKIELCSGCNMCRDFDAELADVSIGSTGS 345

Query: 178 PKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 219
           P   G S       I +R E+G+E    +KN LE+   +  G
Sbjct: 346 P--NGYST------IIIRTEKGEE----IKNALELKEGVDVG 375


>gi|223949797|gb|ACN28982.1| unknown [Zea mays]
          Length = 89

 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 214 PTISSGDRRPFVMETVKADDNAKMG 238
            +I+ G R+PFVMETVK DD AK+G
Sbjct: 26  TSIAKGSRQPFVMETVKDDDAAKLG 50


>gi|379011201|ref|YP_005269013.1| F420 reducing hydrogenase subunit beta [Acetobacterium woodii DSM
           1030]
 gi|375301990|gb|AFA48124.1| F420 reducing hydrogenase subunit beta [Acetobacterium woodii DSM
           1030]
          Length = 390

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 28/220 (12%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           + + G+V+ V+ V  DPD     +  +++T EE+++  G +  +S  L  L  V + G K
Sbjct: 97  LAERGLVDGVIQVGEDPDSPYGTKNFVSKTKEEIVSHCGSRYIVSSPLANLQQVLSNGGK 156

Query: 61  RLLFCGVGCQVQALRS-VEHHLNL-EKLY-VLGTNCVDNGTREGLDKFLKAASSEPETV- 116
             +  G  C +  L + ++++    E +Y  L   C  + + E   K  K    EPE+V 
Sbjct: 157 YAVI-GRPCDIVVLNNYLDNYPQFKENIYCTLTFFCAGSPSVEASKKLAKRLEIEPESVT 215

Query: 117 -LHYE----------FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTN 165
            + Y           F +D + H++++D   +      +   D+  +    C  C D   
Sbjct: 216 KIRYRGYGWPGKATVFSEDKENHMEYIDSWNQ------ILGRDIRKI----CKLCTDGVG 265

Query: 166 ALADLVVGYMG--VPKYTGISMTQHPQYITVRNERGKEML 203
             AD+  G +          + T     +  R+E+G+++L
Sbjct: 266 EAADIASGDLWNLADNKPVFNETDGVNVVFARSEKGRKIL 305


>gi|304314405|ref|YP_003849552.1| F420-dependent glutamate synthase [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587864|gb|ADL58239.1| F420-dependent glutamate synthase [Methanothermobacter marburgensis
           str. Marburg]
          Length = 351

 Score = 38.5 bits (88), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL 51
           L+ G+V+  + V  DP     P PVLA  PE+V+ A G K ++ P L  L
Sbjct: 300 LREGIVDGALVVDRDPAMPWKPVPVLAEDPEDVVRAAGTKYSVCPILKVL 349


>gi|410670576|ref|YP_006922947.1| coenzyme F420 hydrogenase beta subunit [Methanolobus psychrophilus
           R15]
 gi|409169704|gb|AFV23579.1| coenzyme F420 hydrogenase beta subunit [Methanolobus psychrophilus
           R15]
          Length = 341

 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 29/161 (18%)

Query: 88  VLGTNCVDNGTREGL--DKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLP 145
           V+G  C +    E L  DK +   + +P  +  ++     ++ LK  DG +       L 
Sbjct: 204 VVGLFCTETFDYEKLVQDKLIAQKNLDPLDITRFDVKGKLEITLK--DGSLT-----VLS 256

Query: 146 ANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSL 205
            N++ D + P C  C D T   +D+  G +G P        Q    + +RN  G++    
Sbjct: 257 LNEVEDCVRPGCKICTDLTALHSDISAGSIGSP--------QGYTTLIIRNPTGRQF--- 305

Query: 206 VKNLLEITPTISSGD---RRPFVMETVKADDNAKMGRGPSQ 243
                 +T  I +G     +   +E++K     KM R P +
Sbjct: 306 ------VTSAIGNGKLSLEKGVNLESIKKLSTKKMERMPEE 340


>gi|325958331|ref|YP_004289797.1| coenzyme F420 hydrogenase [Methanobacterium sp. AL-21]
 gi|325329763|gb|ADZ08825.1| Coenzyme F420 hydrogenase [Methanobacterium sp. AL-21]
          Length = 367

 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 89  LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAND 148
           +G  C++N +   + K L   +      +    +Q+ +V   ++  ++ E   F +P N 
Sbjct: 40  IGLFCMENFSYSSIKKLLDKNN------IDMNDIQECRVEKNYMWFYLNEDKIFKVPLNK 93

Query: 149 LVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEML 203
               I  +C  C D+T+ L+D+ VG +G  +  G S       + VR+++G E L
Sbjct: 94  AKSCIRKNCNICMDFTSELSDISVGSVGSEE--GWST------VIVRSDKGLEFL 140


>gi|166031467|ref|ZP_02234296.1| hypothetical protein DORFOR_01164 [Dorea formicigenerans ATCC
           27755]
 gi|166028872|gb|EDR47629.1| hypothetical protein DORFOR_01164 [Dorea formicigenerans ATCC
           27755]
          Length = 582

 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 83  LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDY---------KVHLKHLD 133
           LEK Y++  + ++     G D FL  A  + + VL +  + DY         ++  KH D
Sbjct: 432 LEKEYIIYLDSIEGEKLNGHDFFLTGAYLDKDGVLKHGIVFDYSIDYNKLEERIRAKHSD 491

Query: 134 GHIEEVPYFCLPANDLVDVIA-PSCYSCFDYTNALADLVVGYM-GVPKY 180
           G+  E  Y    A+++  +I   +C +  +Y N +  +   Y+ G+ KY
Sbjct: 492 GYFAEKNYEDCIAHEIAHIIPFQNCTTATEYMNMVQKIKGQYVPGISKY 540


>gi|289192916|ref|YP_003458857.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288939366|gb|ADC70121.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 261

 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 19/217 (8%)

Query: 2   LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
           L+ G+++AVV V    D    P   LA TP E+L +   K ++SPN N L         +
Sbjct: 28  LENGILDAVVVV---GDKNWKPVAYLATTPTELLKSTKSKYSISPN-NKLLEYATENYDK 83

Query: 62  LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAA------SSEPET 115
           +   G+ C +  L  ++ +L L+    +G  C  N   E +   +K              
Sbjct: 84  VGLVGLPCHI--LGGLQFNLTLK----VGLFCTKNFYYETIKNIIKERLGLNMDEVSKMN 137

Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
           +   +F+ +  +  K   G  E+V Y  +P  ++  +    C  C D++   AD+ VG +
Sbjct: 138 ITKGKFVVE-TLKKKGFAGT-EKVVYE-IPIKEIEKLCNLGCRVCTDFSAKYADVSVGSV 194

Query: 176 GVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
           G        + ++     + NE  ++ L  VK  ++I
Sbjct: 195 GSEDGWNTVIIRNKMVEDIINEMVEKGLIEVKETVDI 231


>gi|333987996|ref|YP_004520603.1| coenzyme F420 hydrogenase [Methanobacterium sp. SWAN-1]
 gi|333826140|gb|AEG18802.1| Coenzyme F420 hydrogenase [Methanobacterium sp. SWAN-1]
          Length = 365

 Score = 37.4 bits (85), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 14/115 (12%)

Query: 89  LGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAND 148
           +G  C++N +   + K L+  +      ++   + + +V   ++   + E   F +P ++
Sbjct: 43  IGLFCMENFSYSYMRKLLEKHN------INMRDVTECRVEKNYVWFFLTEDRVFKIPLDE 96

Query: 149 LVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEML 203
               +  +C  C D+T+ L+DL VG +G P+  G S       I +R ++G E+L
Sbjct: 97  AKSCVRKNCNICMDFTSELSDLSVGSVGSPE--GWST------IIIRTDKGMELL 143


>gi|261402870|ref|YP_003247094.1| nitrite and sulfite reductase 4Fe-4S region [Methanocaldococcus
           vulcanius M7]
 gi|261369863|gb|ACX72612.1| nitrite and sulphite reductase 4Fe-4S region [Methanocaldococcus
           vulcanius M7]
          Length = 617

 Score = 37.4 bits (85), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 112/275 (40%), Gaps = 53/275 (19%)

Query: 1   MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
           +L+ G ++  + V    D+   P  +  +  +++L +   K  +S  L+ L      G++
Sbjct: 96  LLENGKIDGAIVV---GDECWKPISMAVQNADDLLKSTKSKYAVS-TLDALRKAGEMGLE 151

Query: 61  RLLFCGVGCQVQALRSVEHHLNLEK-----------------LYVLGTNCVDNGTREGLD 103
           ++   G+ CQ+  LR +++   L K                  Y++G  C++    + + 
Sbjct: 152 KVAVVGLPCQINGLRKLQYFPYLAKHDFELGRDGKPVKLPKIEYLIGLFCMEKFKYDNMK 211

Query: 104 KFLKAASSEPETVLHYEFMQ-DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFD 162
           + L+    + E V  ++  +    V+L++    I+   +           +   C  C D
Sbjct: 212 EVLERHGIKIEDVKKFDIKKGKLIVYLENDKKEIKLEEF----------EVCSGCNICRD 261

Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRR 222
           +   +AD+ VG +G P   G S       I +R ++G+E    +KN +E+   +      
Sbjct: 262 FDAGMADVSVGCVGSP--DGYST------IIIRTKKGEE----IKNAIELKEGVD----- 304

Query: 223 PFVMETVKADDNAKMGRGPSQ-PAPKFVGNLIAFF 256
              +E +    N K+ R   +    K  G  I+F+
Sbjct: 305 ---VEAINKLRNKKLKRFKKEVERRKETGEYISFY 336


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.136    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,062,821,377
Number of Sequences: 23463169
Number of extensions: 215038468
Number of successful extensions: 491348
Number of sequences better than 100.0: 453
Number of HSP's better than 100.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 490414
Number of HSP's gapped (non-prelim): 494
length of query: 320
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 178
effective length of database: 9,027,425,369
effective search space: 1606881715682
effective search space used: 1606881715682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)