BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020891
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GS60|HCAR_ARATH 7-hydroxymethyl chlorophyll a reductase, chloroplastic
OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1
Length = 462
Score = 605 bits (1561), Expect = e-172, Method: Compositional matrix adjust.
Identities = 285/320 (89%), Positives = 305/320 (95%)
Query: 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
MLK+ MVEAVVCVQSDP+DRLSPRPVLARTPEEVLAA+GVKPTLSPNLNTL L+EA+GVK
Sbjct: 143 MLKSNMVEAVVCVQSDPEDRLSPRPVLARTPEEVLAARGVKPTLSPNLNTLELIEASGVK 202
Query: 61 RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
RLLFCGVGCQVQALRSVE HLNLEKLYVLGTNCVDNGTR+GLDKFLKAAS EPETVLHYE
Sbjct: 203 RLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTRDGLDKFLKAASKEPETVLHYE 262
Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
FMQDYKV LKHLDGHIEEVPYF LPANDLVDVIAPSCYSCFDYTNALADLV+GYMGVPKY
Sbjct: 263 FMQDYKVQLKHLDGHIEEVPYFSLPANDLVDVIAPSCYSCFDYTNALADLVIGYMGVPKY 322
Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
+G++MT HPQYITVRNERGKEMLSLV+NLLEITPTISSGDRRPFV ETVKADD AK G+G
Sbjct: 323 SGLNMTDHPQYITVRNERGKEMLSLVENLLEITPTISSGDRRPFVTETVKADDAAKFGQG 382
Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
P+QPAP FVGN+IAF +NLVGPKGLEFARYSLDYHTIRNYL+VNR WGK+RA+ HMPSYA
Sbjct: 383 PAQPAPLFVGNIIAFILNLVGPKGLEFARYSLDYHTIRNYLYVNRKWGKQRANTHMPSYA 442
Query: 301 KKIVEMYNQNGQIDQMLSSK 320
KKIVEMYN+NGQID+MLS K
Sbjct: 443 KKIVEMYNKNGQIDKMLSKK 462
>sp|Q7XTG7|HCAR_ORYSJ 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza
sativa subsp. japonica GN=HCAR PE=3 SV=2
Length = 471
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/317 (87%), Positives = 300/317 (94%)
Query: 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
MLK MV+AVVCVQSDPDDRL+P PVLARTP+EV+AAKGVKPTLSPNLNTLALVEAAGVK
Sbjct: 154 MLKANMVDAVVCVQSDPDDRLAPMPVLARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVK 213
Query: 61 RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
RLLFCGVGCQVQALRSVE +L LEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE
Sbjct: 214 RLLFCGVGCQVQALRSVEKYLGLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 273
Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
FMQDYKVHLKHLDGHIEEVPYFCLPA DLVDVIAPSCYSCFDYTN LADLVVGYMGVPKY
Sbjct: 274 FMQDYKVHLKHLDGHIEEVPYFCLPAKDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKY 333
Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
G+SMTQHPQYITVRN+RG+EMLSLV+ LLE TPT+SSG R+PFV+ETVKADD AK GRG
Sbjct: 334 PGVSMTQHPQYITVRNDRGREMLSLVEGLLESTPTVSSGVRQPFVIETVKADDEAKQGRG 393
Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
PSQPAP FVGN+IAF +NL+GPKGLEFARYSLDYHTIRNYLHVNRAWGK+RA++H+PSYA
Sbjct: 394 PSQPAPTFVGNVIAFLLNLIGPKGLEFARYSLDYHTIRNYLHVNRAWGKQRAEQHIPSYA 453
Query: 301 KKIVEMYNQNGQIDQML 317
KKIVE Y+++G+I+ ML
Sbjct: 454 KKIVEAYDKDGRIESML 470
>sp|P46015|Y1601_NOSS1 Uncharacterized protein all1601 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=all1601 PE=4 SV=2
Length = 397
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/307 (55%), Positives = 210/307 (68%), Gaps = 16/307 (5%)
Query: 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
ML G+VE VVCVQ+ +DR P PV+ARTPEE+LAA+ KPTLSPNL+ L VE +G+K
Sbjct: 103 MLNHGLVEGVVCVQNSKEDRFQPMPVIARTPEEILAARVNKPTLSPNLSILEQVEKSGMK 162
Query: 61 RLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120
RLL GVGCQ+QALR+VE L LEKLYVLGT CVDN TR GL KFL+ S PETV+HYE
Sbjct: 163 RLLVIGVGCQIQALRAVEKKLGLEKLYVLGTPCVDNVTRAGLQKFLETTSRSPETVVHYE 222
Query: 121 FMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKY 180
FMQD+++H KH DG IE+VP+F L N L DV APSC SCFDY N+LADLVVGYMG P
Sbjct: 223 FMQDFRIHFKHEDGSIEKVPFFGLKTNQLKDVFAPSCMSCFDYVNSLADLVVGYMGAPFG 282
Query: 181 TGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSGDRRPFVMETVKADDNAKMGRG 240
Q+I VRN+ GKEML LV+N L+ P +S G+R+ V + + A D
Sbjct: 283 W--------QWILVRNDTGKEMLDLVQNQLDTQPVMSEGNRQEAVQQGISAYDKGVT--- 331
Query: 241 PSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYHTIRNYLHVNRAWGKKRADKHMPSYA 300
P +V ++ I+ +GPKGLE+AR+S+D H RNYL V R +K A H+P +A
Sbjct: 332 ----LPMWVAKIMGVVIDKIGPKGLEYARFSIDSHFTRNYLFVKRNHPEKLA-AHVPEFA 386
Query: 301 KKIVEMY 307
K+IV Y
Sbjct: 387 KRIVGQY 393
>sp|Q00391|FRHB_METVO Coenzyme F420 hydrogenase subunit beta OS=Methanococcus voltae
GN=frhB PE=3 SV=1
Length = 280
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 42/211 (19%)
Query: 11 VCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVKRLLFCGVGC 69
V V +D +D + P +A TPEEVL A G K T+SPN++ L V ++++ G C
Sbjct: 45 VSVAADTEDGCNAAPKVATTPEEVLNAAGAKYTVSPNVSVLKDAVREYALEKVGIVGTPC 104
Query: 70 QVQALRSVEHH----LNLEKLYVLGTNCVDNGTREG------------LDKFLKAASSEP 113
QVQA+R + + + + V+G C++N + EG +D LK +
Sbjct: 105 QVQAIRKLIKYPMGFRHTDSRIVMGIFCMENFSYEGMKAIVEEYAGIRMDDVLKTDIGKG 164
Query: 114 ETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVG 173
+ ++ ++ V LK D H+ E SC+ C DYT LAD+ G
Sbjct: 165 KFWVYSKYGDVKSVKLK--DTHMYE---------------QKSCHICTDYTAELADISTG 207
Query: 174 YMGVPKYTGISMTQHPQYITVRNERGKEMLS 204
+G P G S I +R E+G+ ++
Sbjct: 208 SVGSPD--GWST------IFIRTEKGEAYIN 230
>sp|P80490|FRHB_METBF Coenzyme F420 hydrogenase subunit beta OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=frhB PE=1 SV=2
Length = 291
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 2 LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLA-LVEAAGVK 60
L+ G ++ + V + D P+P +A T EE+L A+G + ++SP ++ L + G+
Sbjct: 41 LEEGFIDGTI-VAGEGDKPWQPKPEVAMTREEILKARGTRYSISPQISWLKEATRSFGLD 99
Query: 61 RLLFCGVGCQVQALRSVE-HHLNLEKL-----YVLGTNCVDNGTREGLDKFLKAASSEPE 114
++ GV CQ+QA+R + + +N+ + + +G C++N + L ++ +++
Sbjct: 100 KVGVTGVCCQMQAVRKAQLYPINMRDVPGKVAFTVGLFCMENFPYKSLQSIVEDHANQSL 159
Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
+ + K + G++ VP L A + P C+ C DY + LAD+ G
Sbjct: 160 GSVKKMEITKGKFWVYTERGNVATVP---LKATHKYE--QPGCHVCLDYVSNLADISTGS 214
Query: 175 MGVPKYTGISMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
+G P G S + +R + G E+ S + + E P
Sbjct: 215 VGSPD--GWST------VFIRTKVGNEIWSKAVADGMFETKP 248
>sp|Q60341|FRHB_METJA Coenzyme F420 hydrogenase subunit beta OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=frhB PE=3 SV=1
Length = 287
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%)
Query: 13 VQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVKRLLFCGVGCQV 71
+ +D P +A TPEEVL A G K T+ PN++ L + V G +++ G CQV
Sbjct: 52 IVADNAGEFKAVPKVATTPEEVLEAAGTKYTVCPNISVLKSAVREYGCEKIGVVGTPCQV 111
Query: 72 QALRSVE------HHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ- 123
+A+R + H+ + ++G C++N GL ++ + E V+ + +
Sbjct: 112 RAVRKLMKYPVGFRHVPDKIALIIGIFCMENFPYYGLKLIVEEHCGVKMEDVVKMDIGKG 171
Query: 124 DYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGI 183
+ V+ + E L + IA C+ C DYT LAD+ G +G P G
Sbjct: 172 KFWVYTRW-----GETKAIKLKETHPYEQIA--CHVCTDYTAELADISTGSVGSP--DGW 222
Query: 184 SMTQHPQYITVRNERGKEMLS--LVKNLLEITP 214
S + +R +G+E+ + + LE+ P
Sbjct: 223 ST------VFIRTAKGEEIFNKMVEDGYLEVKP 249
>sp|P19499|FRHB_METTH Coenzyme F420 hydrogenase subunit beta OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=frhB PE=1 SV=4
Length = 281
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 14/184 (7%)
Query: 2 LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTL-ALVEAAGVK 60
L G++E V V + P P++A T +E+ AA G K T SPN+ L V G++
Sbjct: 37 LDEGIIEGAV-VAGPGKEFWKPEPMVAMTSDELKAAAGTKYTFSPNVLMLKKAVRQYGIE 95
Query: 61 RLLFCGVGCQVQALRSVEHH-----LNLEKLYVL-GTNCVDNGTREGLDKFLKAASSEPE 114
+L + CQ +R + + +K+ +L G C++N L F+
Sbjct: 96 KLGTVAIPCQTMGIRKAQTYPFGVRFVADKIKLLVGIYCMENFPYTSLQTFICEKLG--- 152
Query: 115 TVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGY 174
L+ E ++ + + ++ Y LP + C C DY LAD+ G
Sbjct: 153 --LNMELVEKMDIGKGKFWVYTQDDVY-TLPLKETHGYEQAGCKICKDYVAELADVSTGS 209
Query: 175 MGVP 178
+G P
Sbjct: 210 VGSP 213
>sp|Q58280|Y870_METJA Uncharacterized protein MJ0870 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0870 PE=3 SV=1
Length = 620
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 100/235 (42%), Gaps = 44/235 (18%)
Query: 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
+L+ G ++ + V D+ P ++ + E++L K +S L+ L G++
Sbjct: 96 LLENGKIDGAIVV---GDECWKPVSLVVQNAEDLLKTAKSKYAIS-TLDALRKAGEMGLE 151
Query: 61 RLLFCGVGCQVQALRSVE-------HHLNLEK----------LYVLGTNCVDNGTREGLD 103
++ G+ CQ+ LR ++ H L L + Y++G C + + +
Sbjct: 152 KVAVVGLPCQINGLRKLQYFPYHAKHDLELGRNGKPVKLPKIEYLIGLFCTEKFRYDNMK 211
Query: 104 KFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV-IAPSCYSCFD 162
+ L + E V ++ + L +++G +E DL + I C C D
Sbjct: 212 EVLSKHGIDIEKVEKFDIKKGK--LLVYVNGEKKEF--------DLKEFEICSGCKMCRD 261
Query: 163 YTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTIS 217
+ +AD+ VG +G P G S I +R E+G+E +KN +E+ ++
Sbjct: 262 FDAEMADVSVGCVGSP--DGYST------IIIRTEKGEE----IKNAVELKEGVN 304
>sp|Q58135|Y725_METJA Uncharacterized protein MJ0725 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0725 PE=3 SV=1
Length = 261
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 19/217 (8%)
Query: 2 LKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKR 61
L+ G+++AVV V D P LA TP E+L + K ++SPN N L +
Sbjct: 28 LENGILDAVVVV---GDKNWKPVAYLATTPTELLKSTKSKYSISPN-NKLLEYATENYDK 83
Query: 62 LLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAA------SSEPET 115
+ G+ C + L ++ L L+ +G C N + + +K
Sbjct: 84 VGLVGLPCHI--LGGLQFDLTLK----VGLFCTKNFYYDTIKSIIKERFGVNIDEVAKMN 137
Query: 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYM 175
+ +F+ + + K G E+V Y +P ++ + C C D++ AD+ VG +
Sbjct: 138 ITKGKFVVE-TLKKKGFAGT-EKVVYE-IPIKEIEKLCNLGCRVCTDFSAKYADVSVGSV 194
Query: 176 GVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEI 212
G + ++ + NE ++ L VK ++I
Sbjct: 195 GSEDGWNTVIVRNKMVEDIINEMAEKGLIEVKETVDI 231
>sp|P06130|FDHB_METFO Formate dehydrogenase subunit beta OS=Methanobacterium formicicum
GN=fdhB PE=1 SV=1
Length = 399
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 29/220 (13%)
Query: 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVK 60
+LK G+V+AV+ V S D P+L PE+V+ A G + NL + G +
Sbjct: 34 LLKEGIVDAVLAVDSSA-DLYDVVPILIEDPEDVVKAAGSLHFGTLNLAKVVTRYLDGAQ 92
Query: 61 RLLFCGVGCQVQALRSVE----HHLNLEKLYVLGTNCVDNGT------REGLDKFLKAAS 110
+ A+ VE +N + + ++G NC GT R+ +++F +
Sbjct: 93 DMKIAVTVKPCDAMTMVELMKREKVNADNVIMVGLNC--GGTMPPVKGRQMMEEFYEV-- 148
Query: 111 SEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV---IAPSCYSCFDYTNAL 167
+P++V+ E + K+ ++ DG +E+P ++L D +C C +
Sbjct: 149 -DPDSVVKEEIAKG-KLIVETEDGTEKEIPI-----DELEDEGFGRRTNCRRCEVNIPRM 201
Query: 168 ADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK 207
ADL G GV + +I V + +G E+L K
Sbjct: 202 ADLACGNWGVIG----PLAGKATFIEVCSPKGAEVLEKAK 237
>sp|Q5P316|RL18_AROAE 50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1)
GN=rplR PE=3 SV=1
Length = 117
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 218 SGDRRPFVMETVKADDNAKMGRGPSQPAPKFVGNLIAFFINLVGPKGLEFARYSLDYH 275
SG R TV+AD +++ G ++ A + VG LIA G + + F R YH
Sbjct: 43 SGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQYH 100
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 129 LKHLDGHI--EEVPYFCLPANDL-----VDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
LK GH+ + VP FCLP +L VDVI S Y C + + Y + +YT
Sbjct: 68 LKECSGHVFVDSVPEFCLPETELLDLSTVDVILISNYHCM--------MALPY--ITEYT 117
Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 219
G + T + TV + G+ ++ + N +E P S
Sbjct: 118 GFTGTVYATEPTV--QIGRLLMEELVNSIERVPKAQSA 153
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 129 LKHLDGHI--EEVPYFCLPANDL-----VDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
LK GH+ + VP FCLP +L VDVI S Y C + + Y + ++T
Sbjct: 68 LKECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCM--------MALPY--ITEHT 117
Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 219
G + T + TV + G+ ++ + N +E P S
Sbjct: 118 GFTGTVYATEPTV--QIGRLLMEELVNFIERVPKAQSA 153
>sp|P48382|RFX5_HUMAN DNA-binding protein RFX5 OS=Homo sapiens GN=RFX5 PE=1 SV=1
Length = 616
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 110 SSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYS 159
SSEP T+ + E+M Y+ HL+ H + CLP + D C S
Sbjct: 78 SSEPSTLSNEEYMYAYRWIRNHLEEHTD----TCLPKQSVYDAYRKYCES 123
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 129 LKHLDGHI--EEVPYFCLPANDL-----VDVIAPSCYSCFDYTNALADLVVGYMGVPKYT 181
LK GH+ + VP FCLP +L VDVI S Y C + + Y + ++T
Sbjct: 68 LKECSGHVFVDSVPEFCLPETELIDLSTVDVILISNYHCM--------MALPY--ITEHT 117
Query: 182 GISMTQHPQYITVRNERGKEMLSLVKNLLEITPTISSG 219
G + T + TV + G+ ++ + N +E P S
Sbjct: 118 GFTGTVYATEPTV--QIGRLLMEELVNFIERVPKAQSA 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,646,136
Number of Sequences: 539616
Number of extensions: 5215148
Number of successful extensions: 13017
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 12997
Number of HSP's gapped (non-prelim): 21
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)