Query 020891
Match_columns 320
No_of_seqs 259 out of 655
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03289 frhB coenzyme F420 h 100.0 1.3E-46 2.8E-51 352.3 21.6 204 1-219 34-247 (275)
2 PRK09325 coenzyme F420-reducin 100.0 5.8E-45 1.3E-49 342.5 22.8 202 1-217 36-247 (282)
3 COG1035 FrhB Coenzyme F420-red 100.0 2.8E-42 6E-47 327.1 18.6 201 1-216 84-294 (332)
4 PRK09326 F420H2 dehydrogenase 100.0 2.8E-41 6.1E-46 325.4 19.6 199 1-216 104-304 (341)
5 PF04432 FrhB_FdhB_C: Coenzyme 100.0 1.2E-35 2.7E-40 257.6 17.3 149 57-219 2-156 (161)
6 PF04422 FrhB_FdhB_N: Coenzyme 99.3 1.7E-12 3.6E-17 100.6 4.0 53 1-53 30-82 (82)
7 TIGR03275 methan_mark_8 putati 75.3 30 0.00066 32.2 9.8 82 1-90 84-171 (259)
8 PF09872 DUF2099: Uncharacteri 61.4 1E+02 0.0022 28.9 10.2 81 1-90 84-171 (258)
9 TIGR01656 Histidinol-ppas hist 60.0 55 0.0012 27.2 7.8 73 47-119 32-124 (147)
10 PF13419 HAD_2: Haloacid dehal 45.8 1.4E+02 0.0029 24.3 8.0 72 47-120 82-157 (176)
11 PF12641 Flavodoxin_3: Flavodo 37.8 2.1E+02 0.0045 24.7 8.0 52 57-108 65-123 (160)
12 cd05295 MDH_like Malate dehydr 37.8 80 0.0017 32.1 6.2 62 59-123 242-305 (452)
13 TIGR01668 YqeG_hyp_ppase HAD s 36.9 1.6E+02 0.0035 25.1 7.3 76 39-120 40-115 (170)
14 PRK15055 anaerobic sulfite red 36.6 21 0.00046 34.9 1.8 37 59-96 89-138 (344)
15 TIGR02252 DREG-2 REG-2-like, H 35.1 2.2E+02 0.0048 24.4 8.0 70 47-119 110-183 (203)
16 KOG1496 Malate dehydrogenase [ 34.3 62 0.0013 30.5 4.3 103 6-123 80-185 (332)
17 PF10387 DUF2442: Protein of u 33.8 74 0.0016 23.6 4.1 29 116-144 1-29 (79)
18 TIGR01509 HAD-SF-IA-v3 haloaci 31.7 2.1E+02 0.0046 23.7 7.2 71 47-120 90-164 (183)
19 PF08844 DUF1815: Domain of un 30.4 47 0.001 26.4 2.4 44 152-198 30-77 (105)
20 PRK10826 2-deoxyglucose-6-phos 30.0 1.7E+02 0.0037 25.7 6.5 71 47-120 97-172 (222)
21 TIGR01449 PGP_bact 2-phosphogl 28.8 3.2E+02 0.0069 23.5 8.0 70 48-119 91-164 (213)
22 TIGR01662 HAD-SF-IIIA HAD-supe 27.9 3.1E+02 0.0067 21.8 8.4 74 46-121 29-111 (132)
23 TIGR02253 CTE7 HAD superfamily 27.9 3.6E+02 0.0078 23.3 8.2 71 48-120 100-174 (221)
24 PRK06769 hypothetical protein; 27.8 3.3E+02 0.0071 23.2 7.7 75 47-121 33-118 (173)
25 PHA02095 hypothetical protein 27.3 67 0.0014 24.3 2.7 30 5-34 38-67 (84)
26 TIGR01454 AHBA_synth_RP 3-amin 26.6 3.8E+02 0.0082 23.1 8.0 72 47-120 80-155 (205)
27 PF00743 FMO-like: Flavin-bind 25.8 37 0.0008 35.1 1.5 60 6-73 138-200 (531)
28 TIGR02910 sulfite_red_A sulfit 25.4 86 0.0019 30.6 3.9 37 59-96 89-137 (334)
29 PRK13288 pyrophosphatase PpaX; 25.4 3.5E+02 0.0077 23.4 7.7 69 48-119 88-161 (214)
30 PF00255 GSHPx: Glutathione pe 24.8 1.2E+02 0.0025 24.6 4.0 39 58-96 20-64 (108)
31 cd06276 PBP1_FucR_like Ligand- 24.1 3.9E+02 0.0086 23.7 7.9 118 4-122 50-198 (247)
32 TIGR01990 bPGM beta-phosphoglu 23.9 2.7E+02 0.0057 23.3 6.4 69 47-120 92-165 (185)
33 TIGR01428 HAD_type_II 2-haloal 23.6 4.6E+02 0.01 22.3 9.7 73 46-120 96-172 (198)
34 cd01337 MDH_glyoxysomal_mitoch 22.2 6.4E+02 0.014 24.1 9.2 64 58-124 109-176 (310)
35 TIGR02254 YjjG/YfnB HAD superf 21.4 3.7E+02 0.008 23.2 7.0 70 47-120 102-177 (224)
No 1
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=100.00 E-value=1.3e-46 Score=352.26 Aligned_cols=204 Identities=25% Similarity=0.453 Sum_probs=176.1
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHH-cCCCEEEEEecccHHHHHHHHHH
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEH 79 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~-~~~kkvafvGtPCQI~aLr~~~~ 79 (320)
|||+|.|||||+++ ..+++|+++|++++|+|||.+++||||+||++++.|+++.+ .++++||||||||||+|||++++
T Consensus 34 lLe~g~IDgvv~~~-~~~~~~~~~~~~~~~~eel~~~~GSkY~~s~~~~~l~~~~~~~~~~~va~vGtPCqi~alr~l~~ 112 (275)
T TIGR03289 34 ALEENIIDGAIVAG-PGDEPWKPEPLVATTPEEILKAAGTKYTVCPNLSVLKEAVREYGLEKIGTVGTPCQVMGLRKAQT 112 (275)
T ss_pred HHHcCCccEEEEEe-cCCCCCceeEEEECCHHHHHHhcCCcccCCccHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 58999999999865 56789999999999999999999999999999999999854 45799999999999999999986
Q ss_pred h-----cCccc-eEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeeccccccccccccc
Q 020891 80 H-----LNLEK-LYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV 152 (320)
Q Consensus 80 ~-----l~~~~-l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~ 152 (320)
+ ...++ +|+|||+|||+||++.|.+||++ .++++++|.+++||. +.+++.+.||++..+|+.. .+.+
T Consensus 113 ~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~r~-g~~~v~~~dg~~~~~~~~~-----~~~~ 186 (275)
T TIGR03289 113 YPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDIGK-GKFWVYTTGGEVGKIPLKE-----THGY 186 (275)
T ss_pred ccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEeEC-CcEEEEECCCcEEEEEhHH-----hhhh
Confidence 3 12356 69999999999999999999976 688899999999995 4566778999887765433 3457
Q ss_pred ccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccceeccCCCCC
Q 020891 153 IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTISSG 219 (320)
Q Consensus 153 ~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~le~~~~~~~~ 219 (320)
.|++|+.|+|+++++||||+|++|.|+ |+|+|||||++|++||+.+. +.++..++++.-
T Consensus 187 ~r~~C~~C~D~~~~~ADIsvGd~~~~~--------G~s~VivrT~kG~~ll~~a~~~g~ie~~~~~~~~ 247 (275)
T TIGR03289 187 EQAGCHVCMDYVAELADISTGSVGSPD--------GWSTVIIRTDKGESIINKAVEAGILETKPIEEVK 247 (275)
T ss_pred cCCCCccCCCCCCcccceeeeccCCCC--------CceEEEEECHHHHHHHHHHHHcCceeeccccccc
Confidence 899999999999999999999887663 57899999999999999996 568888877433
No 2
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=100.00 E-value=5.8e-45 Score=342.52 Aligned_cols=202 Identities=29% Similarity=0.519 Sum_probs=173.8
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHH-cCCCEEEEEecccHHHHHHHHHH
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEA-AGVKRLLFCGVGCQVQALRSVEH 79 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~-~~~kkvafvGtPCQI~aLr~~~~ 79 (320)
||++|.|||||+++ ..+++|+++|++++|+|||.+++||||+||++++.++++.+ .+.++||||||||||+|||++++
T Consensus 36 lLe~g~VDgvv~~~-~~~~~~~~~~~~a~~~eel~~~~GSkY~~s~~~~~~~~~l~~~~~~kva~VGtPCqI~alr~l~~ 114 (282)
T PRK09325 36 ALEEGIIDGVIVAG-DGEEPWKPVPKVATTPEEILEAAGTKYTISPNVSVLKEAVREYGLDKVGIVGTPCQIQAVRKAQL 114 (282)
T ss_pred HHHcCCccEEEEec-CCCCCCCceeEEECCHHHHHHhcCCcccCCchHHHHHHHHHhcCCCeEEEEccChHHHHHHHHHh
Confidence 58999999999974 56788999999999999999999999999999999999764 45699999999999999999985
Q ss_pred h-cC----ccce-EEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeeccccccccccccc
Q 020891 80 H-LN----LEKL-YVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV 152 (320)
Q Consensus 80 ~-l~----~~~l-~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~ 152 (320)
+ .+ .+++ |+|||+|||+||++.|++||+. ++.++++|.+++||+ +..++.+.||+...+| +++++.+
T Consensus 115 ~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~~~~r~-g~~~v~~~~g~~~~~~-----~~~~~~~ 188 (282)
T PRK09325 115 YPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKKMDIGK-GKFWVYTKRGDVKTIP-----LKETHKY 188 (282)
T ss_pred ccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeEEEEeC-CeEEEEEcCCcEEEeE-----HHHhhhh
Confidence 3 11 2566 9999999999999999999999 788889999999996 3445667889887654 3444567
Q ss_pred ccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccceeccCCC
Q 020891 153 IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTIS 217 (320)
Q Consensus 153 ~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~le~~~~~~ 217 (320)
.|++|+.|+|+++++||||+|++|.|. |+|+|+|||++|++||+.+. +.++..+++.
T Consensus 189 ~r~~C~~C~d~~~~~ADIsvGd~~~~~--------G~s~vivrt~kG~~ll~~a~~~g~i~~~~~~~ 247 (282)
T PRK09325 189 EQPGCHVCTDYTAELADISTGSVGSPD--------GWSTVFVRTKKGEEIFNKAVEAGLLETKPIEE 247 (282)
T ss_pred cCCCCcCCcCCCCCcccEeeeccCCCC--------CceEEEEEChHHHHHHHHHHHcCceEeccCcc
Confidence 899999999999999999999876553 57899999999999999996 5678888764
No 3
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-42 Score=327.07 Aligned_cols=201 Identities=35% Similarity=0.593 Sum_probs=178.5
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHH-HcCCCEEEEEecccHHHHHHHHHH
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVE-AAGVKRLLFCGVGCQVQALRSVEH 79 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~-~~~~kkvafvGtPCQI~aLr~~~~ 79 (320)
|||+|+|||||+++ +++++|+|+|++++|++||.+++||||+.||+++.|+++. +.+.+||||||+||||+|+|++++
T Consensus 84 aLe~gliDgvv~v~-~~~~~~kp~p~va~t~eel~~tagsky~~~~~l~~L~ea~~~~g~~rvavvG~PC~i~avrk~~~ 162 (332)
T COG1035 84 ALEEGLIDGVVVVG-SGEEEWKPIPVVATTPEELLETAGSKYTISPNLSALKEAVRKYGLERVAVVGTPCQIQAVRKLQK 162 (332)
T ss_pred HHHcCCceEEEEeC-CCccccCCeeEEecChHHHHHhcCCcccCchhHHHHHHHHhhcCCceEEEeecchHHHHHHHHhh
Confidence 68999999999988 7789999999999999999999999999999999999987 444579999999999999999987
Q ss_pred hcC-c-----cceEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeeccccccccccccc
Q 020891 80 HLN-L-----EKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDV 152 (320)
Q Consensus 80 ~l~-~-----~~l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~ 152 (320)
+.. . ++.|+||+||.+++++..++++|+. .++++.+|.+++++ +|++++++.||++..+ ++++++.+
T Consensus 163 ~~~~~~~~~~~i~~~iGlfC~e~f~y~~l~~~l~e~~gvd~~dV~k~di~-kGk~~v~~~dG~~~~~-----~l~e~e~~ 236 (332)
T COG1035 163 FDLGLKHRREKIVYVIGLFCMENFSYEGLKKFLEEDLGVDPEDVEKMDIR-KGKFVVELKDGEVKEI-----PLKETEEY 236 (332)
T ss_pred ccccccccccceEEEEeeecCCCcCHHHHHHHHHHHhCCCHHHeEEEEee-CceEEEEecCCcEEEE-----Ehhhhhcc
Confidence 632 2 2689999999999999999999998 59999999999998 7888889999977644 56777778
Q ss_pred ccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccceeccCC
Q 020891 153 IAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLLEITPTI 216 (320)
Q Consensus 153 ~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~le~~~~~ 216 (320)
.+++|+.|.|+++++||||+|+||+|+ | ||+|+|||++|+++|+.+. +.|+.+++.
T Consensus 237 ~~~gC~~C~D~~a~~ADiSvGsvGsP~--G------w~tVlVRt~~g~~i~~~av~~g~le~k~~~ 294 (332)
T COG1035 237 GPEGCRVCTDFVAELADISVGSVGSPD--G------WSTVLVRTEKGEEILDGAVEAGLLEVKEIE 294 (332)
T ss_pred cCCCCeehhhccccccccccccccCCC--c------eeEEEEecchHHHHHHHHHhccceeeeccc
Confidence 889999999999999999999999996 4 5799999999999999997 456555443
No 4
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=100.00 E-value=2.8e-41 Score=325.38 Aligned_cols=199 Identities=25% Similarity=0.458 Sum_probs=169.4
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHh
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHH 80 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~ 80 (320)
||++|.||+|++++. ++.|++.|++++|+|||.+++||||++|++++.|+++.+ .+++||||||||||+|||+++..
T Consensus 104 ~L~~g~Vd~V~~~~~--~~~~~~~~~~~~~~eel~~~~gSkY~~s~~~~~l~~~~~-~~~kVa~vG~PCqi~alr~~~~~ 180 (341)
T PRK09326 104 LLKQGEIDCAVGITR--NEKWETELVLLTSAEDVERTRGTKYTYDSVLSALREPFE-KYDRIAVIGVPCQAHGARLIREN 180 (341)
T ss_pred HHHcCCccEEEEecc--CCCccceeEEECCHHHHHHhcCCcccCcchHHHHHHHHh-cCCeEEEEcCchhHHHHHHHHhh
Confidence 589999999998754 567999999999999999999999999999999999875 48999999999999999999876
Q ss_pred cCccceEEEcccCCCCCCHHHH-HHHHHH-hCCCCCCeEEEEEecCcEEEEEEeCCcEEeecccccccccccccccCCCc
Q 020891 81 LNLEKLYVLGTNCVDNGTREGL-DKFLKA-ASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCY 158 (320)
Q Consensus 81 l~~~~l~~Igl~C~G~~s~~~~-~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~dG~~~~~~y~~~~~~~l~~~~r~sC~ 158 (320)
+..+++|+|||+|.|++.+... .+|++. .++++++|.+++||++ .+++.+.||+...+|+ +.++.++|++|+
T Consensus 181 ~~~~~l~~Igl~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~r~~-~~~~~~~~g~~~~~~~-----~~~~~~~r~~C~ 254 (341)
T PRK09326 181 VNDKIVLIIGLLCMESFHHDVMLDKIIPEIMGVKIEDVVKMDFTKG-KFWAYTKDGEVHSVPI-----KDVAKYARNPCH 254 (341)
T ss_pred cccceEEEEccccCCCCChhHHHHHHHHHhcCCCHHHeeEEEEECC-EEEEEEcCCcEEEeEH-----HHhhHhhcCCCc
Confidence 5667999999999887777554 467755 5777889999999964 5667778998766544 334557999999
Q ss_pred cCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhhccceeccCC
Q 020891 159 SCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVKNLLEITPTI 216 (320)
Q Consensus 159 ~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~~~le~~~~~ 216 (320)
.|+|+++++||||+|++|.| .|+|+|||||+||++||+.+++.+++.+.+
T Consensus 255 ~C~D~~~~~aDIsiGd~g~~--------~G~s~vivrt~kG~~l~~~a~~~~~~~~~~ 304 (341)
T PRK09326 255 HCCDYTSVFADISVGSVGAP--------DGWNSVLIRTDIGEKYFKMVRDELEIMEDP 304 (341)
T ss_pred cccccCCcccceeeeccCCC--------CceEEEEEeChHHHHHHHHHHHhccccccC
Confidence 99999999999999988755 357899999999999999999887776655
No 5
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=100.00 E-value=1.2e-35 Score=257.65 Aligned_cols=149 Identities=31% Similarity=0.539 Sum_probs=128.3
Q ss_pred cCCCEEEEEecccHHHHHHHHHHhcC---ccceEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecCcEEEEEEe
Q 020891 57 AGVKRLLFCGVGCQVQALRSVEHHLN---LEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQDYKVHLKHL 132 (320)
Q Consensus 57 ~~~kkvafvGtPCQI~aLr~~~~~l~---~~~l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~~~~~i~~~ 132 (320)
+++++||||||||||+|||+++++.. .+++|+|||+|||+||++.|++||+. ++.++++|.+++||+ ||+.+++.
T Consensus 2 ~~~~kV~~vG~PCqi~al~~~~~~~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~-g~~~i~~~ 80 (161)
T PF04432_consen 2 QGGKKVAFVGTPCQIAALRKLLKRNYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD-GWFIITTK 80 (161)
T ss_pred CCCCEEEEEeccHHHHHHHHHHhhCcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC-CeEEEEEe
Confidence 36899999999999999999987521 24789999999999999999999998 689989999999997 78888888
Q ss_pred CCcEEeecccccccccccccccCCCccCcCCCCCCCceeeeecCCCCCCCCCCCCCcEEEEEeChHHHHHHHHhh--ccc
Q 020891 133 DGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYTGISMTQHPQYITVRNERGKEMLSLVK--NLL 210 (320)
Q Consensus 133 dG~~~~~~y~~~~~~~l~~~~r~sC~~C~d~~~~~ADItiG~~g~p~~~g~~~~~G~s~VlvrT~kG~~ll~~~~--~~l 210 (320)
||+...+|+ +.++.+.|++|+.|.|++++.||||+|+||.+ +|+|+|+|||+||++||+.++ +.+
T Consensus 81 ~g~~~~~~~-----~~~~~~~r~~C~~C~d~~~~~aDIsiGd~~~~--------~G~S~vivrt~kG~~l~~~~~~~~~l 147 (161)
T PF04432_consen 81 DGKEKEIPL-----KELGFFLRPSCYICPDFTPERADISIGDWGDP--------KGWSLVIVRTEKGEELLEEAKENGYL 147 (161)
T ss_pred CCCEEEEeh-----HHhCCccCCccccCCCCCCCcCCEEEEeCCCC--------CceEEEEEECHHHHHHHHHHHHCCcE
Confidence 988776654 33366899999999999999999999997655 467899999999999999998 468
Q ss_pred eeccCCCCC
Q 020891 211 EITPTISSG 219 (320)
Q Consensus 211 e~~~~~~~~ 219 (320)
++.|++..+
T Consensus 148 e~~~~~~~~ 156 (161)
T PF04432_consen 148 ELKPIEPEK 156 (161)
T ss_pred EecCCChhh
Confidence 999888443
No 6
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=99.30 E-value=1.7e-12 Score=100.57 Aligned_cols=53 Identities=45% Similarity=0.708 Sum_probs=50.1
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHH
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLAL 53 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~e 53 (320)
|||+|+||+||+++.+++++|+++|++++|+|||.+++||||+++|++..|+|
T Consensus 30 lLe~g~Vd~vv~~~~~~~~~~~~~~~i~~~~eel~~~aGSkY~~~~~~~~Lke 82 (82)
T PF04422_consen 30 LLESGLVDGVVVVGRDDDDPWRPEPVIATSPEELLKAAGSKYSPSPVLSALKE 82 (82)
T ss_pred HHHcCCceEEEEEeecCCCCcceEEEEECCHHHHHHHcCCceeccchHHHhcC
Confidence 68999999999999888889999999999999999999999999999998875
No 7
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=75.33 E-value=30 Score=32.22 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=45.9
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcC--CCCc-ccccHHHHHHHHHcCCCEEEE--EecccHHHHHH
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKG--VKPT-LSPNLNTLALVEAAGVKRLLF--CGVGCQVQALR 75 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~G--SKY~-~S~~l~~l~ev~~~~~kkvaf--vGtPCQI~aLr 75 (320)
+|++|.+|++|.+- +. .-.+++++|+=+....| |--+ -+|+-+.++.+.+. +.-|+= ...==|+.|++
T Consensus 84 ~l~~g~iDaaVivc-Dg-----aGTVI~~nP~lVQGigGR~SGLv~TtPIpevi~~Ie~~-gGiVLd~~tA~IDq~~Gv~ 156 (259)
T TIGR03275 84 ALKSGFIDAAVIVC-DG-----AGTVITTNPALVQGLGGRISGLIETSPIPEVIEKIEDE-GGIVLDPDTATIDQIKGVE 156 (259)
T ss_pred HHhcCCcceEEEEe-cC-----cCeEEeCCHHHHhhccceeeeeeeccccHHHHHHHHhc-CCEEeCCccccccHHHHHH
Confidence 37899999998743 32 45667888876654433 2222 24555666666543 333332 23445777776
Q ss_pred HHHHhcCccc-eEEEc
Q 020891 76 SVEHHLNLEK-LYVLG 90 (320)
Q Consensus 76 ~~~~~l~~~~-l~~Ig 90 (320)
+... +|+++ ..+|.
T Consensus 157 ~Aie-~Gyk~IaVTv~ 171 (259)
T TIGR03275 157 KAIE-LGYKKIAVTVA 171 (259)
T ss_pred HHHH-cCCceEEEEec
Confidence 6543 56544 33443
No 8
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=61.35 E-value=1e+02 Score=28.85 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=47.8
Q ss_pred CCCCCeecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCc----ccccHHHHHHHHHcCCCEEE--EEecccHHHHH
Q 020891 1 MLKTGMVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPT----LSPNLNTLALVEAAGVKRLL--FCGVGCQVQAL 74 (320)
Q Consensus 1 lLe~g~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~----~S~~l~~l~ev~~~~~kkva--fvGtPCQI~aL 74 (320)
+|++|++|++|.+- +. .-.+++++|+=+... |-+.+ -+|+-+.++.+.+. +.-|+ =.+.==|+.|+
T Consensus 84 ~l~~g~iDaaV~vc-dG-----AGTVI~~~P~lVQGi-GGrmSGLv~T~PI~evi~~Ie~~-ggiVLd~~tA~IDq~~Gv 155 (258)
T PF09872_consen 84 ALRRGLIDAAVIVC-DG-----AGTVITTNPELVQGI-GGRMSGLVSTTPIPEVIERIEEK-GGIVLDPETARIDQVEGV 155 (258)
T ss_pred HHhcCCcceEEEEe-cC-----CCeEEeCCHHHHhhc-cceeeeeeeccchHHHHHHHHhc-CCEEeCCccccccHHHHH
Confidence 47899999998753 32 446677777766543 33332 34656666666653 33333 23444678888
Q ss_pred HHHHHhcCccc-eEEEc
Q 020891 75 RSVEHHLNLEK-LYVLG 90 (320)
Q Consensus 75 r~~~~~l~~~~-l~~Ig 90 (320)
++... .|+++ ..+|-
T Consensus 156 ~kAie-~Gyk~IaVTV~ 171 (258)
T PF09872_consen 156 KKAIE-MGYKRIAVTVA 171 (258)
T ss_pred HHHHH-cCCceEEEEec
Confidence 77654 56654 34443
No 9
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=59.97 E-value=55 Score=27.21 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=41.2
Q ss_pred cHHHHHHHHHcCCCEEEEEecc------cHHHHH-------HHHHHhcCccc-eEEEc-ccC-----CCCCCHHHHHHHH
Q 020891 47 NLNTLALVEAAGVKRLLFCGVG------CQVQAL-------RSVEHHLNLEK-LYVLG-TNC-----VDNGTREGLDKFL 106 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtP------CQI~aL-------r~~~~~l~~~~-l~~Ig-l~C-----~G~~s~~~~~~~L 106 (320)
+...++.+++++.+-++++..+ +++.++ +...+.++... .+.+. ..| ..-|+++.|...+
T Consensus 32 ~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~ 111 (147)
T TIGR01656 32 AVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEAL 111 (147)
T ss_pred hHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHH
Confidence 4566777776644555566555 334433 33333344321 12222 211 1369999999999
Q ss_pred HHhCCCCCCeEEE
Q 020891 107 KAASSEPETVLHY 119 (320)
Q Consensus 107 ~~~~~~~~~V~~~ 119 (320)
+.++.+++++..+
T Consensus 112 ~~~~~~~~e~i~I 124 (147)
T TIGR01656 112 KRLGVDASRSLVV 124 (147)
T ss_pred HHcCCChHHEEEE
Confidence 9998877665544
No 10
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=45.76 E-value=1.4e+02 Score=24.28 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=43.9
Q ss_pred cHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCcc----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~----~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
+...+.++++++.+-+++++.+ -..++...+.++.. .+++.+-.-..-|+++.++..++.+++.|+++..+.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~--~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vg 157 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGS--RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVG 157 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSE--HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEE
T ss_pred hhhhhhhcccccceeEEeecCC--cccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEe
Confidence 4556667765544455555553 45555554555543 334333333356788999999999998888775554
No 11
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=37.78 E-value=2.1e+02 Score=24.67 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=36.3
Q ss_pred cCCCEEEEEeccc----H---HHHHHHHHHhcCccceEEEcccCCCCCCHHHHHHHHHH
Q 020891 57 AGVKRLLFCGVGC----Q---VQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKA 108 (320)
Q Consensus 57 ~~~kkvafvGtPC----Q---I~aLr~~~~~l~~~~l~~Igl~C~G~~s~~~~~~~L~~ 108 (320)
-.+|+|+++||-- . -..++++...+...+.++=.++|.|-.++...+.|-+.
T Consensus 65 l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~~~~lg~f~CqGk~~~~~~e~~~~~ 123 (160)
T PF12641_consen 65 LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPKGNEILGTFMCQGKMDPKVIEKYKKM 123 (160)
T ss_pred ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhccCCeecceEEeCCcCCHHHHHHHHhc
Confidence 3479999999953 2 12333333334445788889999999999888777665
No 12
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.75 E-value=80 Score=32.10 Aligned_cols=62 Identities=3% Similarity=0.045 Sum_probs=40.9
Q ss_pred CCEEEEEe-cccHHHHHHHHHHhcCccceEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEec
Q 020891 59 VKRLLFCG-VGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQ 123 (320)
Q Consensus 59 ~kkvafvG-tPCQI~aLr~~~~~l~~~~l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~ 123 (320)
..+|+++| -||.+.++-.+..--++..-=+||+-+.. ..-++.+|.. +++++++|.++-.-+
T Consensus 242 ~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtld---s~R~r~~LA~kl~V~~~~V~~~~VwG 305 (452)
T cd05295 242 DVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQ---ENRAKALLARKLNVNSAGIKDVIVWG 305 (452)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchH---HHHHHHHHHHHhCcCHHHceeeEEEE
Confidence 38999999 89999998876442244322344444433 4456666665 889999997755544
No 13
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=36.91 E-value=1.6e+02 Score=25.14 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=43.9
Q ss_pred CCCCcccccHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCccceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEE
Q 020891 39 GVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLH 118 (320)
Q Consensus 39 GSKY~~S~~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~ 118 (320)
.+......+.+.++++++.+.+-+.+++.++.. -...+.+.++... . +-..-|+++.+...++.++.+++++..
T Consensus 40 ~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~-~~~~~~~~~gl~~--~---~~~~KP~p~~~~~~l~~~~~~~~~~l~ 113 (170)
T TIGR01668 40 DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQ-RAKAVEKALGIPV--L---PHAVKPPGCAFRRAHPEMGLTSEQVAV 113 (170)
T ss_pred CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHH-HHHHHHHHcCCEE--E---cCCCCCChHHHHHHHHHcCCCHHHEEE
Confidence 333333445667777776544445666666532 2233333344321 1 234588999999999998877766554
Q ss_pred EE
Q 020891 119 YE 120 (320)
Q Consensus 119 ~~ 120 (320)
+.
T Consensus 114 IG 115 (170)
T TIGR01668 114 VG 115 (170)
T ss_pred EC
Confidence 43
No 14
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=36.57 E-value=21 Score=34.86 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=27.6
Q ss_pred CCEEEEEecccHHHHHHHHHHhc---C----------ccceEEEcccCCCC
Q 020891 59 VKRLLFCGVGCQVQALRSVEHHL---N----------LEKLYVLGTNCVDN 96 (320)
Q Consensus 59 ~kkvafvGtPCQI~aLr~~~~~l---~----------~~~l~~Igl~C~G~ 96 (320)
.+.|+| .-||+++|+.-+-.-+ + .+++++|++-|...
T Consensus 89 ~~~vif-vR~CDl~ai~~lD~vfl~~g~~~D~yY~~rRe~~~iV~~~C~~~ 138 (344)
T PRK15055 89 KKILIF-LRSCDINAIKRLDYIYLKNGNEEDYYYKRLREKVKFVLMECEES 138 (344)
T ss_pred CcEEEE-EeccchhHHHHHHHHHhcCCCCCCHHHHHHHhCcEEEEEeCCCC
Confidence 456666 9999999998874421 2 15799999999873
No 15
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=35.07 E-value=2.2e+02 Score=24.42 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=41.4
Q ss_pred cHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCc----cceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEE
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 119 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~----~~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~ 119 (320)
+...++.+++.+.+-.+++..+..+ +...+.++. +.++.-+-.-.+-|+++.+...++.++.+++++..+
T Consensus 110 ~~~~l~~L~~~g~~~~i~Sn~~~~~---~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~I 183 (203)
T TIGR02252 110 AIKLLKDLRERGLILGVISNFDSRL---RGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHI 183 (203)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchhH---HHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEE
Confidence 3455666665544445556655543 333334453 334443333445789999999999998887766554
No 16
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=34.25 E-value=62 Score=30.50 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=62.6
Q ss_pred eecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHHcCCCEEEEEecccHHHHHHHHHH--hcCc
Q 020891 6 MVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEH--HLNL 83 (320)
Q Consensus 6 ~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~--~l~~ 83 (320)
-||-++.+|+-|..+. -...||++.-+..|- .-..+|++.. +..-||+|||-||-..||-.... .+..
T Consensus 80 dv~~ailvGa~PR~eG-------MERkDll~~NvkIfk--~Qg~AL~k~A-~~~~KVlVVgNPaNTNali~~k~ApsIP~ 149 (332)
T KOG1496|consen 80 DVDVAILVGAMPRREG-------MERKDLLSANVKIFK--SQGAALEKYA-KPNVKVLVVGNPANTNALILKKFAPSIPE 149 (332)
T ss_pred cCcEEEEeccccCccc-------chhhhHHhhcceeeh--hhhHHHHHhc-CCCceEEEecCccccchhHHhhhCCCCch
Confidence 3566666665543221 346788877776665 2334555543 34789999999999999965421 1222
Q ss_pred cceEEEcccCCCCCCHH-HHHHHHHHhCCCCCCeEEEEEec
Q 020891 84 EKLYVLGTNCVDNGTRE-GLDKFLKAASSEPETVLHYEFMQ 123 (320)
Q Consensus 84 ~~l~~Igl~C~G~~s~~-~~~~~L~~~~~~~~~V~~~~fR~ 123 (320)
+| |-|.--.... .+-+.-..+|+..++|+++-.-+
T Consensus 150 kN-----fs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWG 185 (332)
T KOG1496|consen 150 KN-----FSALTRLDHNRALAQLALKLGVPVSDVKNVIIWG 185 (332)
T ss_pred hc-----chhhhhhchhhHHHHHHHhhCCchhhcceeEEec
Confidence 33 2333333332 34455556888888999998876
No 17
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=33.83 E-value=74 Score=23.64 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=21.9
Q ss_pred eEEEEEecCcEEEEEEeCCcEEeeccccc
Q 020891 116 VLHYEFMQDYKVHLKHLDGHIEEVPYFCL 144 (320)
Q Consensus 116 V~~~~fR~~~~~~i~~~dG~~~~~~y~~~ 144 (320)
|+++.+.+++.+.+.+.||+...+|+..+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl~~~ 29 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDLSPL 29 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEECCCS
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEhHHh
Confidence 56888988889999999999987764433
No 18
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=31.68 E-value=2.1e+02 Score=23.71 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=39.4
Q ss_pred cHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCccc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~~----l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
+...++.+++.+.+-.++++.+-.. ..+..+++.+. +++-+-.=.+-|++..+...++.++.+++++..+.
T Consensus 90 ~~~~l~~l~~~g~~~~i~Tn~~~~~---~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vg 164 (183)
T TIGR01509 90 VEPLLEALRARGKKLALLTNSPRDH---AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLFVD 164 (183)
T ss_pred HHHHHHHHHHCCCeEEEEeCCchHH---HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEEEc
Confidence 3455556655544455566666554 22222245432 22211111356888999999999988777665543
No 19
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=30.41 E-value=47 Score=26.43 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=24.2
Q ss_pred cccCCCccCcCCCC-CCCceeeeecCCCC---CCCCCCCCCcEEEEEeChH
Q 020891 152 VIAPSCYSCFDYTN-ALADLVVGYMGVPK---YTGISMTQHPQYITVRNER 198 (320)
Q Consensus 152 ~~r~sC~~C~d~~~-~~ADItiG~~g~p~---~~g~~~~~G~s~VlvrT~k 198 (320)
-+.-+||.|.|... ..|-+.+ .+|... + -. .+-|+||+-.|+++
T Consensus 30 G~~AsCYtC~dG~~~~~ASFmv-~lg~~HliRF-LV-Sd~GIsW~E~rd~r 77 (105)
T PF08844_consen 30 GYLASCYTCGDGRDMNSASFMV-SLGDNHLIRF-LV-SDYGISWTEMRDDR 77 (105)
T ss_pred CceeEEEecCCCCCCCceeEEE-EcCCCcEEEE-EE-ecCCeeEEEecCch
Confidence 45679999987542 2232222 222110 1 01 14578999988875
No 20
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=29.95 E-value=1.7e+02 Score=25.74 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=41.8
Q ss_pred cHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCccceEEEcccC-----CCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNC-----VDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~~l~~Igl~C-----~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
+...++.++++ +.+++++ +.+.-..++.+.++++....+-. ++| ++-|.++.+...++.++.+++++..+.
T Consensus 97 ~~~~l~~l~~~-g~~~~i~-S~~~~~~~~~~l~~~~l~~~f~~-~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ig 172 (222)
T PRK10826 97 VREALALCKAQ-GLKIGLA-SASPLHMLEAVLTMFDLRDYFDA-LASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALE 172 (222)
T ss_pred HHHHHHHHHHC-CCeEEEE-eCCcHHHHHHHHHhCcchhcccE-EEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEc
Confidence 34455555554 4444443 33444555555555565443322 233 356888999999999998888776554
No 21
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=28.83 E-value=3.2e+02 Score=23.47 Aligned_cols=70 Identities=17% Similarity=0.051 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCccc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEE
Q 020891 48 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 119 (320)
Q Consensus 48 l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~~----l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~ 119 (320)
...++.++++ +-+++++- .+....++.+.+.++... .+.-+-...+-|.++.+...++.++.+++++..+
T Consensus 91 ~~~L~~l~~~-g~~~~i~S-~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 164 (213)
T TIGR01449 91 EATLGALRAK-GLRLGLVT-NKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYV 164 (213)
T ss_pred HHHHHHHHHC-CCeEEEEe-CCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhHeEEe
Confidence 4455555554 45555443 344455555555555432 2222333345788999999999998877655443
No 22
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.94 E-value=3.1e+02 Score=21.77 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHcCCCEEEEEecc-----cH-HHHHHHHHHhcCccceEEEcccCC--CCCCHHHHHHHHHHh-CCCCCCe
Q 020891 46 PNLNTLALVEAAGVKRLLFCGVG-----CQ-VQALRSVEHHLNLEKLYVLGTNCV--DNGTREGLDKFLKAA-SSEPETV 116 (320)
Q Consensus 46 ~~l~~l~ev~~~~~kkvafvGtP-----CQ-I~aLr~~~~~l~~~~l~~Igl~C~--G~~s~~~~~~~L~~~-~~~~~~V 116 (320)
.+...++.+++++.+-+++++.+ +. -..++.+.+.++....+ .++|+ .-|+++.++..++.+ +.+++++
T Consensus 29 ~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~ 106 (132)
T TIGR01662 29 EVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDV--LYACPHCRKPKPGMFLEALKRFNEIDPEES 106 (132)
T ss_pred CHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEE--EEECCCCCCCChHHHHHHHHHcCCCChhhe
Confidence 45566777766544444555544 11 34455555555553222 23443 468889999999998 5888777
Q ss_pred EEEEE
Q 020891 117 LHYEF 121 (320)
Q Consensus 117 ~~~~f 121 (320)
..+.-
T Consensus 107 v~IGD 111 (132)
T TIGR01662 107 VYVGD 111 (132)
T ss_pred EEEcC
Confidence 66554
No 23
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=27.86 E-value=3.6e+02 Score=23.34 Aligned_cols=71 Identities=14% Similarity=0.023 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCcc----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 48 LNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 48 l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~----~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
...++.++++ +.++++ -|-+.-..++...+.++.+ .+++-+-.-.+-|+++.+...++.++.+++++..+.
T Consensus 100 ~~~L~~L~~~-g~~~~i-~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ig 174 (221)
T TIGR02253 100 RDTLMELRES-GYRLGI-ITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVG 174 (221)
T ss_pred HHHHHHHHHC-CCEEEE-EeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEEC
Confidence 4455555544 344333 3333333334444445543 344444444567899999999999998887776664
No 24
>PRK06769 hypothetical protein; Validated
Probab=27.77 E-value=3.3e+02 Score=23.25 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=43.8
Q ss_pred cHHHHHHHHHcCCCEEEEEecccH------HHHHHHHHHhcCccceEEEcccCC-----CCCCHHHHHHHHHHhCCCCCC
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQ------VQALRSVEHHLNLEKLYVLGTNCV-----DNGTREGLDKFLKAASSEPET 115 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQ------I~aLr~~~~~l~~~~l~~Igl~C~-----G~~s~~~~~~~L~~~~~~~~~ 115 (320)
+...|+++++++.+-..++..+.. +..+....+.++.+..+.....|. .-|+++.+...++.++.++++
T Consensus 33 v~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 112 (173)
T PRK06769 33 TKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQ 112 (173)
T ss_pred HHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 455677776654444455555531 112333233355555443333353 478899999999999888877
Q ss_pred eEEEEE
Q 020891 116 VLHYEF 121 (320)
Q Consensus 116 V~~~~f 121 (320)
...+.=
T Consensus 113 ~i~IGD 118 (173)
T PRK06769 113 CAVIGD 118 (173)
T ss_pred eEEEcC
Confidence 666653
No 25
>PHA02095 hypothetical protein
Probab=27.27 E-value=67 Score=24.26 Aligned_cols=30 Identities=17% Similarity=0.543 Sum_probs=22.7
Q ss_pred CeecEEEEEEecCCCCCcceeEEEcCHHHH
Q 020891 5 GMVEAVVCVQSDPDDRLSPRPVLARTPEEV 34 (320)
Q Consensus 5 g~VDgVv~~~~~~~~~~~~~~~la~t~eel 34 (320)
-.||||+|+..+.+.++.---.+++-|+++
T Consensus 38 srvdgilciegd~~~pm~~f~~ii~vp~~~ 67 (84)
T PHA02095 38 SRVDGILCIEGDKEHPMPDFEHIVEVPDEM 67 (84)
T ss_pred EeccEEEEecCCCCCCchhheeeeeCchhh
Confidence 468999999888877776555667777764
No 26
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.57 E-value=3.8e+02 Score=23.06 Aligned_cols=72 Identities=14% Similarity=-0.008 Sum_probs=40.3
Q ss_pred cHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCcc----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~----~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
....++.++++ +-+++++--..+ ..++...+.++.. .++..+=.-..-|+++.+...++.++.+++++..+.
T Consensus 80 ~~~~L~~L~~~-g~~~~i~Sn~~~-~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ig 155 (205)
T TIGR01454 80 VPELLAELRAD-GVGTAIATGKSG-PRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVG 155 (205)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCch-HHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEc
Confidence 45566666655 344433333333 3344444445543 233333233457889999999999888777654443
No 27
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=25.80 E-value=37 Score=35.08 Aligned_cols=60 Identities=22% Similarity=0.144 Sum_probs=32.2
Q ss_pred eecEEEEEEecCCCCCcceeEEEcCHHHHHhhcCCCCcccccHHHHHHHHHcCCCEEEEEec---ccHHHH
Q 020891 6 MVEAVVCVQSDPDDRLSPRPVLARTPEEVLAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGV---GCQVQA 73 (320)
Q Consensus 6 ~VDgVv~~~~~~~~~~~~~~~la~t~eel~~~~GSKY~~S~~l~~l~ev~~~~~kkvafvGt---PCQI~a 73 (320)
.-|+||+.......+..|. .+.+.+.++.|. ...|. .|+......+|||+|||. .|||+.
T Consensus 138 ~fD~VvvatG~~~~P~~P~----~~~~G~e~F~G~-i~HS~---~yr~~~~f~gKrVlVVG~g~Sg~DIa~ 200 (531)
T PF00743_consen 138 EFDAVVVATGHFSKPNIPE----PSFPGLEKFKGE-IIHSK---DYRDPEPFKGKRVLVVGGGNSGADIAV 200 (531)
T ss_dssp EECEEEEEE-SSSCESB---------CTGGGHCSE-EEEGG---G--TGGGGTTSEEEEESSSHHHHHHHH
T ss_pred EeCeEEEcCCCcCCCCCCh----hhhhhhhcCCee-EEccc---cCcChhhcCCCEEEEEeCCHhHHHHHH
Confidence 4577776443333333222 234566677774 33333 366655566999999998 567665
No 28
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=25.43 E-value=86 Score=30.58 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCEEEEEecccHHHHHHHHHHhc-C-----------ccceEEEcccCCCC
Q 020891 59 VKRLLFCGVGCQVQALRSVEHHL-N-----------LEKLYVLGTNCVDN 96 (320)
Q Consensus 59 ~kkvafvGtPCQI~aLr~~~~~l-~-----------~~~l~~Igl~C~G~ 96 (320)
.+.|+| .-||+++|+.-+..-+ . .+++++|++-|...
T Consensus 89 ~~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe~~~iV~~~C~~~ 137 (334)
T TIGR02910 89 KNIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLREKVKFVLIECEES 137 (334)
T ss_pred CcEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHhCcEEEEEeCCCC
Confidence 456666 9999999998875421 1 26799999999874
No 29
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=25.43 E-value=3.5e+02 Score=23.44 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEE-EEecccHHHHHHHHHHhcCccc----eEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEE
Q 020891 48 LNTLALVEAAGVKRLL-FCGVGCQVQALRSVEHHLNLEK----LYVLGTNCVDNGTREGLDKFLKAASSEPETVLHY 119 (320)
Q Consensus 48 l~~l~ev~~~~~kkva-fvGtPCQI~aLr~~~~~l~~~~----l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~ 119 (320)
...++.++++ +-+++ +++.+ -..++...+.++... ++..+-.-.+-|.++.+...++.++.+++++..+
T Consensus 88 ~~~l~~L~~~-g~~~~i~S~~~--~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~i 161 (214)
T PRK13288 88 YETLKTLKKQ-GYKLGIVTTKM--RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMV 161 (214)
T ss_pred HHHHHHHHHC-CCeEEEEeCCC--HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEE
Confidence 3445555544 33444 44444 344444444455543 3333444446788999999998888766655443
No 30
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=24.80 E-value=1.2e+02 Score=24.60 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=29.0
Q ss_pred CCCEEEEEeccc------HHHHHHHHHHhcCccceEEEcccCCCC
Q 020891 58 GVKRLLFCGVGC------QVQALRSVEHHLNLEKLYVLGTNCVDN 96 (320)
Q Consensus 58 ~~kkvafvGtPC------QI~aLr~~~~~l~~~~l~~Igl~C~G~ 96 (320)
.+|-++||-+.+ |...|..+.++.+..-+-+++++|..-
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTKQYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp TTSEEEEEEEESSSTTHHHHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred CCCEEEEEecccccCCccccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 478889988655 567787776554445688999999764
No 31
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=24.14 E-value=3.9e+02 Score=23.74 Aligned_cols=118 Identities=8% Similarity=-0.055 Sum_probs=57.5
Q ss_pred CCeecEEEEEEecCCCC-C------cceeEEEcCHHHHHhhcCCCCcccccHHH----HHHHHH--cCCCEEEEEecccH
Q 020891 4 TGMVEAVVCVQSDPDDR-L------SPRPVLARTPEEVLAAKGVKPTLSPNLNT----LALVEA--AGVKRLLFCGVGCQ 70 (320)
Q Consensus 4 ~g~VDgVv~~~~~~~~~-~------~~~~~la~t~eel~~~~GSKY~~S~~l~~----l~ev~~--~~~kkvafvGtPCQ 70 (320)
+..|||+|++....++. . ...|++.-+...- ...+-.++..+.... .+.+.+ ++.++++++|.|-+
T Consensus 50 ~~~vdGvIi~~~~~~~~~~~~~~~~~~~PvV~i~~~~~-~~~~~~~V~~D~~~~~~~a~~~L~~~~~G~~~Ia~i~~~~~ 128 (247)
T cd06276 50 KGKYSGYVVMPHFKNEIQYFLLKKIPKEKLLILDHSIP-EGGEYSSVAQDFEKAIYNALQEGLEKLKKYKKLILVFPNKT 128 (247)
T ss_pred hcCCCEEEEecCCCCcHHHHHHhccCCCCEEEEcCcCC-CCCCCCeEEEccHHHHHHHHHHHHHHhcCCCEEEEEecCcc
Confidence 47799999876433322 1 1235555443210 011223454454443 334456 78999999987754
Q ss_pred ------HHHHHHHHHhcCccc-eEE----------EcccCCCCCCHHHHHHHHHHhCCC-CCCeEEEEEe
Q 020891 71 ------VQALRSVEHHLNLEK-LYV----------LGTNCVDNGTREGLDKFLKAASSE-PETVLHYEFM 122 (320)
Q Consensus 71 ------I~aLr~~~~~l~~~~-l~~----------Igl~C~G~~s~~~~~~~L~~~~~~-~~~V~~~~fR 122 (320)
.+|.+...+..|.+. ... =+++|.....-.+.-+.+++.|.. |++|.=+-|-
T Consensus 129 ~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~disvigfd 198 (247)
T cd06276 129 AIPKEIKRGFERFCKDYNIETEIINDYENREIEKGDLYIILSDTDLVFLIKKARESGLLLGKDIGIISYN 198 (247)
T ss_pred HhHHHHHHHHHHHHHHcCCCcccccccchhhccCCcEEEEeCHHHHHHHHHHHHHcCCcCCceeEEEEec
Confidence 223322222223210 000 134455444444455566666653 5666656564
No 32
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=23.90 E-value=2.7e+02 Score=23.32 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=38.5
Q ss_pred cHHHHHHHHHcCCCEEEEE-ecccHHHHHHHHHHhcCc----cceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 47 NLNTLALVEAAGVKRLLFC-GVGCQVQALRSVEHHLNL----EKLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafv-GtPCQI~aLr~~~~~l~~----~~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
+...|+.++++ +-+++++ +.+-+-. +.+.++. +..+.-+-.-..-|.++.+...++.++.+++++..+.
T Consensus 92 ~~~~L~~L~~~-g~~~~i~s~~~~~~~----~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vg 165 (185)
T TIGR01990 92 IKNLLDDLKKN-NIKIALASASKNAPT----VLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIE 165 (185)
T ss_pred HHHHHHHHHHC-CCeEEEEeCCccHHH----HHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEe
Confidence 34556666654 4555543 3232222 2233443 3333333334567899999999999887776665544
No 33
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=23.60 E-value=4.6e+02 Score=22.31 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCcc----ceEEEcccCCCCCCHHHHHHHHHHhCCCCCCeEEEE
Q 020891 46 PNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLE----KLYVLGTNCVDNGTREGLDKFLKAASSEPETVLHYE 120 (320)
Q Consensus 46 ~~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~----~l~~Igl~C~G~~s~~~~~~~L~~~~~~~~~V~~~~ 120 (320)
.+...++.++++ +-+++++ |-+....++...+.++.. .+++-+-.=..-|+++.+...++.++.+|+++..+.
T Consensus 96 ~~~~~L~~L~~~-g~~~~i~-Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vg 172 (198)
T TIGR01428 96 DVPAGLRALKER-GYRLAIL-SNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVA 172 (198)
T ss_pred CHHHHHHHHHHC-CCeEEEE-eCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEe
Confidence 345566666654 3444333 333344455555555543 344433333457899999999999998888776654
No 34
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.21 E-value=6.4e+02 Score=24.13 Aligned_cols=64 Identities=8% Similarity=-0.015 Sum_probs=40.1
Q ss_pred CCCEEEEEecccHHHHH---HHHHHhcCccceEEEcccCCCCCCHHHHHHHHHH-hCCCCCCeEEEEEecC
Q 020891 58 GVKRLLFCGVGCQVQAL---RSVEHHLNLEKLYVLGTNCVDNGTREGLDKFLKA-ASSEPETVLHYEFMQD 124 (320)
Q Consensus 58 ~~kkvafvGtPCQI~aL---r~~~~~l~~~~l~~Igl~C~G~~s~~~~~~~L~~-~~~~~~~V~~~~fR~~ 124 (320)
..-.++++.-||++-+. ..+.+..++..-=+||+ |+ -....++.++.+ ++.++++|.-+-+-+.
T Consensus 109 p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~-~~--LDs~R~~~~la~~l~v~~~~V~~~v~GeH 176 (310)
T cd01337 109 PKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGV-TT--LDVVRANTFVAELLGLDPAKVNVPVIGGH 176 (310)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEee-ec--hHHHHHHHHHHHHhCcCHHHEEEEEEecC
Confidence 46799999999998622 22233334432237788 74 444567777765 7888888775544433
No 35
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=21.37 E-value=3.7e+02 Score=23.18 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=41.2
Q ss_pred cHHHHHHHHHcCCCEEEEEecccHHHHHHHHHHhcCccceEEEcccCC-----CCCCHHHHHHHHHHh-CCCCCCeEEEE
Q 020891 47 NLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLEKLYVLGTNCV-----DNGTREGLDKFLKAA-SSEPETVLHYE 120 (320)
Q Consensus 47 ~l~~l~ev~~~~~kkvafvGtPCQI~aLr~~~~~l~~~~l~~Igl~C~-----G~~s~~~~~~~L~~~-~~~~~~V~~~~ 120 (320)
....++.+++. .+-+++++.+.+.. ....+.++....+- .++|+ .-|+++.+...++.+ +.+++++..+.
T Consensus 102 ~~~~L~~l~~~-~~~~i~Sn~~~~~~--~~~l~~~~l~~~fd-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~ig 177 (224)
T TIGR02254 102 AFELMENLQQK-FRLYIVTNGVRETQ--YKRLRKSGLFPFFD-DIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIG 177 (224)
T ss_pred HHHHHHHHHhc-CcEEEEeCCchHHH--HHHHHHCCcHhhcC-EEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEEC
Confidence 44556666655 66667777665433 33334445433221 12222 248888999999998 88887666653
Done!