Query 020892
Match_columns 320
No_of_seqs 140 out of 212
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02601 beta-carotene hydroxy 100.0 2E-113 4E-118 800.7 26.6 299 1-319 1-300 (303)
2 PF04116 FA_hydroxylase: Fatty 99.4 3.2E-13 6.9E-18 104.7 5.1 110 151-278 2-114 (114)
3 PLN02434 fatty acid hydroxylas 99.1 2.8E-10 6.1E-15 105.6 10.7 122 145-282 82-210 (237)
4 COG3000 ERG3 Sterol desaturase 98.4 3.1E-06 6.7E-11 78.3 11.8 128 147-295 96-240 (271)
5 PLN02869 fatty aldehyde decarb 97.4 0.00027 5.9E-09 73.8 6.7 131 138-291 119-264 (620)
6 KOG0539 Sphingolipid fatty aci 97.2 0.00098 2.1E-08 62.6 6.8 132 146-293 83-234 (240)
7 TIGR02230 ATPase_gene1 F0F1-AT 93.8 0.44 9.5E-06 39.9 8.2 65 98-166 31-98 (100)
8 KOG0872 Sterol C5 desaturase [ 93.0 0.87 1.9E-05 44.8 10.1 68 111-191 95-165 (312)
9 KOG0873 C-4 sterol methyl oxid 88.0 2.8 6.1E-05 41.0 8.5 56 120-178 94-153 (283)
10 KOG0874 Sphingolipid hydroxyla 87.3 0.73 1.6E-05 44.4 4.0 30 149-178 125-156 (287)
11 PF11947 DUF3464: Protein of u 86.3 5.8 0.00013 35.6 8.9 58 90-158 55-115 (153)
12 COG0053 MMT1 Predicted Co/Zn/C 78.6 29 0.00062 33.4 11.0 201 91-315 59-276 (304)
13 PLN02220 delta-9 acyl-lipid de 77.4 46 0.001 32.5 12.1 29 252-280 221-253 (299)
14 PF12270 Cyt_c_ox_IV: Cytochro 75.7 54 0.0012 29.1 11.0 107 115-242 11-124 (137)
15 PRK02251 putative septation in 67.4 5.7 0.00012 32.9 2.9 45 106-155 32-81 (87)
16 PRK03557 zinc transporter ZitB 65.3 84 0.0018 30.0 10.7 72 91-166 65-144 (312)
17 PLN02434 fatty acid hydroxylas 62.0 30 0.00065 32.9 7.0 72 206-283 61-133 (237)
18 COG1230 CzcD Co/Zn/Cd efflux s 62.0 1.2E+02 0.0027 29.8 11.3 134 90-249 67-210 (296)
19 PF10520 Kua-UEV1_localn: Kua- 60.0 28 0.0006 31.9 6.2 46 271-317 128-175 (178)
20 PF06930 DUF1282: Protein of u 59.5 1.2E+02 0.0026 26.3 13.9 42 130-172 46-90 (170)
21 PF10710 DUF2512: Protein of u 56.5 41 0.0009 29.4 6.5 59 103-172 55-113 (136)
22 KOG1600 Fatty acid desaturase 53.9 9.6 0.00021 38.0 2.4 102 199-307 41-176 (321)
23 PF04678 DUF607: Protein of un 52.9 66 0.0014 28.7 7.3 54 93-157 83-137 (180)
24 PLN02220 delta-9 acyl-lipid de 50.6 36 0.00079 33.2 5.7 36 232-278 68-119 (299)
25 PLN02505 omega-6 fatty acid de 47.0 60 0.0013 32.6 6.7 104 197-304 45-171 (381)
26 TIGR02908 CoxD_Bacillus cytoch 45.9 1.4E+02 0.003 25.8 7.9 40 124-163 69-110 (110)
27 PRK09509 fieF ferrous iron eff 45.7 2.6E+02 0.0057 26.3 12.4 20 199-218 155-174 (299)
28 PF03334 PhaG_MnhG_YufB: Na+/H 44.8 84 0.0018 24.9 6.0 54 108-166 28-81 (81)
29 TIGR01297 CDF cation diffusion 43.9 2.4E+02 0.0053 25.3 12.5 108 91-218 36-153 (268)
30 cd01060 Membrane-FADS-like The 43.0 34 0.00075 26.6 3.6 37 241-279 14-62 (122)
31 cd03511 Rhizopine-oxygenase-li 40.6 79 0.0017 29.3 6.1 37 241-279 57-105 (285)
32 cd03508 Delta4-sphingolipid-FA 39.0 38 0.00082 32.5 3.9 85 194-279 9-107 (289)
33 PLN02598 omega-6 fatty acid de 38.9 97 0.0021 31.6 6.9 43 234-279 132-186 (421)
34 PF06738 DUF1212: Protein of u 38.8 2.6E+02 0.0055 24.3 8.6 56 90-155 85-140 (193)
35 PRK12585 putative monovalent c 38.8 77 0.0017 29.9 5.7 57 108-167 39-95 (197)
36 PRK11463 fxsA phage T7 F exclu 38.3 1.3E+02 0.0029 26.5 6.8 28 128-155 56-83 (148)
37 COG3174 Predicted membrane pro 37.1 2.2E+02 0.0048 29.1 9.0 44 135-178 43-97 (371)
38 PF04186 FxsA: FxsA cytoplasmi 36.7 1.6E+02 0.0034 25.0 6.8 31 125-155 49-79 (119)
39 PRK12672 putative monovalent c 36.1 1.2E+02 0.0027 25.9 6.1 60 108-167 37-101 (118)
40 PF14110 DUF4282: Domain of un 35.9 1.8E+02 0.0039 23.3 6.7 60 103-169 15-74 (90)
41 KOG1287 Amino acid transporter 33.9 3.7E+02 0.0081 28.3 10.2 85 162-269 368-452 (479)
42 PF11998 DUF3493: Protein of u 32.5 2.7E+02 0.0059 22.5 7.7 50 106-163 23-72 (75)
43 PF06781 UPF0233: Uncharacteri 32.1 32 0.0007 28.4 1.9 46 105-155 30-81 (87)
44 COG4988 CydD ABC-type transpor 31.2 2.7E+02 0.0058 30.0 8.8 50 99-149 217-266 (559)
45 cd03514 CrtR_beta-carotene-hyd 31.0 1.4E+02 0.003 26.9 5.9 38 240-279 36-85 (207)
46 PRK12592 putative monovalent c 30.2 1.6E+02 0.0034 25.8 5.9 60 108-167 41-103 (126)
47 PRK00159 putative septation in 30.0 83 0.0018 26.2 3.9 46 105-155 30-81 (87)
48 PF11239 DUF3040: Protein of u 29.6 1.4E+02 0.0031 23.3 5.1 36 89-124 22-60 (82)
49 COG3000 ERG3 Sterol desaturase 29.2 1.2E+02 0.0027 28.4 5.5 33 234-279 101-133 (271)
50 PRK10019 nickel/cobalt efflux 29.1 3.5E+02 0.0075 26.5 8.6 24 137-160 86-110 (279)
51 PRK12587 putative monovalent c 28.6 1.8E+02 0.0039 25.1 5.9 56 108-166 40-95 (118)
52 PF10190 Tmemb_170: Putative t 26.4 2.2E+02 0.0048 24.3 6.0 25 116-144 60-84 (105)
53 PRK12438 hypothetical protein; 26.0 1E+03 0.022 27.7 12.4 151 106-274 170-333 (991)
54 PLN03199 delta6-acyl-lipid des 25.7 1.3E+02 0.0028 30.9 5.3 26 227-253 161-186 (485)
55 PF04246 RseC_MucC: Positive r 25.6 73 0.0016 26.6 3.0 44 204-247 72-115 (135)
56 COG3239 DesA Fatty acid desatu 25.1 1.3E+02 0.0028 29.5 4.9 49 230-279 66-125 (343)
57 PF05232 BTP: Bacterial Transm 24.8 1.9E+02 0.0041 22.4 4.9 37 202-244 15-51 (67)
58 PLN02498 omega-3 fatty acid de 24.6 1.8E+02 0.0038 30.4 6.0 112 197-312 116-243 (450)
59 PF11158 DUF2938: Protein of u 23.9 3.4E+02 0.0075 24.1 7.0 19 149-167 3-21 (150)
60 PF01925 TauE: Sulfite exporte 23.8 4.3E+02 0.0094 23.1 7.6 32 135-166 188-219 (240)
61 PRK12675 putative monovalent c 23.4 3.2E+02 0.0069 23.1 6.4 54 108-166 33-87 (104)
62 PF02932 Neur_chan_memb: Neuro 22.8 2.5E+02 0.0055 22.2 5.4 51 115-165 29-83 (237)
63 COG0598 CorA Mg2+ and Co2+ tra 22.5 1.3E+02 0.0027 28.9 4.3 45 203-247 268-317 (322)
64 PF00664 ABC_membrane: ABC tra 21.6 4.6E+02 0.01 21.6 8.0 48 102-150 221-268 (275)
65 TIGR00893 2A0114 d-galactonate 21.4 5E+02 0.011 22.7 7.4 24 144-167 255-278 (399)
66 COG3030 FxsA Protein affecting 20.8 3.8E+02 0.0083 24.4 6.7 34 123-156 52-85 (158)
67 PRK07424 bifunctional sterol d 20.3 2.2E+02 0.0048 28.7 5.6 37 143-191 5-45 (406)
68 COG2149 Predicted membrane pro 20.1 3.6E+02 0.0078 23.8 6.1 48 109-156 60-111 (120)
No 1
>PLN02601 beta-carotene hydroxylase
Probab=100.00 E-value=1.7e-113 Score=800.72 Aligned_cols=299 Identities=70% Similarity=1.171 Sum_probs=272.6
Q ss_pred Ccccccc-ccccccccccccccCCCCCCCCCCCCccCCccccccccccccccCCCceeEEEEeccccccccccccchhhh
Q 020892 1 MAVGLLA-AIVPKPFCLLTTKLQPSSLLTTKPAPLFAPLGTHRGFFNGKNRRKLNSFTVCFVLEEKKQSTQIETFTEEEE 79 (320)
Q Consensus 1 ma~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~ 79 (320)
||+|||+ |.|+||.. + ..+..+.|+++..|+|.... .+.||| +++|||||+||+++.+++++.+|+++
T Consensus 1 ma~~~~~~~~t~~~l~--~---~~~~~~~~~~~~~f~~~~~~-----~~~~~~-~~~~~c~v~~~~~~~~~~~~~~~~~~ 69 (303)
T PLN02601 1 MAAGLSTIAVTLKPLH--R---SDFRLNHPISLAVFPPSLRF-----NGFRRR-KILTVCFVVEERKQSSPMENDEKPES 69 (303)
T ss_pred CcccccccccccccCc--c---cCccCCCCcccccCCHHHHh-----hhcccC-CceeEEEEeccccccccccccchhhh
Confidence 8999998 88999843 4 34555556567778886432 112333 56899999999999887877766665
Q ss_pred hhhhcccchHHHHHHHHHhhhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHH
Q 020892 80 EESGTQISTAARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEF 159 (320)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~r~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf 159 (320)
++.+++.+.++|++||++||||||+||++||||||+||||||++||||||+|||||||||+.||+++++|+++|+++|||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~k~~er~ty~~aa~~ss~gi~s~a~~a~y~rf~~~~~~g~~p~~em~~~~al~lgtfvgMEf 149 (303)
T PLN02601 70 TTSSSEILMTSRLLKKAEKKKSERFTYLIAAVMSSFGITSMAIMAVYYRFSWQMKGGEVSMLEMFGTFALSVGAAVGMEF 149 (303)
T ss_pred hhhhhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhcHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 55555555679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccchhhhhhhcCCCCCCCCCCCCCCCCcchHHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHh
Q 020892 160 WARWAHKALWHASLWHMHEKVIFGISLQSHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVF 239 (320)
Q Consensus 160 ~A~~aHKylmHG~lW~~H~~~~f~~~h~sHH~p~~g~FE~NDlFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~Y 239 (320)
||||+|||||||+||.||+ |||+|++|+||+||+|||+||+|||+|+++|+++.|++|++||++|+|||+|
T Consensus 150 ~Aw~aHKYvMHG~LW~lH~---------sHH~Pr~g~FE~NDlFaVifAvpAIaL~~~G~~~~g~~p~~~fgiGlGITlY 220 (303)
T PLN02601 150 WARWAHRALWHDSLWNMHE---------SHHKPREGAFELNDVFAIVNAVPAIGLLYYGFFNKGLVPGLCFGAGLGITVF 220 (303)
T ss_pred HHHHHHHHHHHhcchhhhh---------hcCCCCCCCcccccchhhhhHHHHHHHHHHhhccccccHHHHHHHHHhHHHH
Confidence 9999999999999999999 9999999999999999999999999999999998889999999999999999
Q ss_pred hhHhhhhhceeecCcccCCcCCCcHHHHHHHHHHHhhcCCCCCCcceeEeeecchhhhcCChHHHHHHHHHHhhhccCCC
Q 020892 240 GMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEISKRIKSYNRVP 319 (320)
Q Consensus 240 GiaYffvHDglVH~Rfp~g~~~~~pYlrri~~AH~lHH~~Ke~Gv~FG~ll~P~eye~vgg~eeL~~~~~~~~~~~~~~~ 319 (320)
||+||||||||||||||+++++|+||+||+++||++||++|++|||||||++|+|||||||.||||||++||+|++++++
T Consensus 221 GiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGfll~P~e~e~vgg~~el~~~~~~~~~~~~~~~ 300 (303)
T PLN02601 221 GMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGLFLGPKEVEEVGGKEELEKEISRRIKLYNKGS 300 (303)
T ss_pred HHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceEEeccHHHHhcCCHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988764
No 2
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.40 E-value=3.2e-13 Score=104.74 Aligned_cols=110 Identities=33% Similarity=0.626 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hccchhhhhhhcCCCCCCCCCCC-CCCCCcchHHHHhhHHHHHHHHHhhhccCCCchh
Q 020892 151 VGAAVGMEFWARWAHKALWH--ASLWHMHEKVIFGISLQSHHRPR-EGPFELNDVFAIINAVPAIALLSFGFFHKGLVPG 227 (320)
Q Consensus 151 vga~v~MEf~A~~aHKylmH--G~lW~~H~~~~f~~~h~sHH~p~-~g~FE~NDlFaiifAvpAIaLi~~G~~~~g~~~g 227 (320)
+++++++|++.|++|| +|| +++|.+|+ .||++. ..++.... +..+.++....+...+... ..+.
T Consensus 2 ~~~~l~~d~~~Y~~HR-l~H~~~~l~~~H~---------~HH~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~ 68 (114)
T PF04116_consen 2 LLGFLLWDFWEYWMHR-LLHKIPFLWRIHK---------VHHSPKNPTPLSAFR-FHPLEALLLALLPLLLPLL--LLPF 68 (114)
T ss_pred eeeHHHHHHHHHHHHH-HHhcCchHHHHHH---------HHhCCcccCchHHHH-cChHHHHHHHHHHHHHHHH--HHhH
Confidence 5678999999999999 999 56899999 999753 33442222 2222222222222111000 0112
Q ss_pred hHHHHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHHHHHHHHhhcC
Q 020892 228 LCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 278 (320)
Q Consensus 228 ~~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrri~~AH~lHH~ 278 (320)
.+..+.+|++++++.|.+.|+++ +.+.+ +..+|++...+.|++||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~H~~~-~~~~~----~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 69 HALAFLLGIALFYLWYIFIHSGY-HHRFP----PRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCc-cCCCC----CcchhHhcCHHHHHhhCc
Confidence 24557789999999999999997 43433 456899999999999995
No 3
>PLN02434 fatty acid hydroxylase
Probab=99.14 E-value=2.8e-10 Score=105.55 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---ccc--hhhhhhhcCCCCCCCCC-CCCC-CCCcchHHHHhhHHHHHHHHHh
Q 020892 145 GTFALSVGAAVGMEFWARWAHKALWHA---SLW--HMHEKVIFGISLQSHHR-PREG-PFELNDVFAIINAVPAIALLSF 217 (320)
Q Consensus 145 ~~~~l~vga~v~MEf~A~~aHKylmHG---~lW--~~H~~~~f~~~h~sHH~-p~~g-~FE~NDlFaiifAvpAIaLi~~ 217 (320)
..+++++++++.-.+++|.+||+++|. +-| .+|. +.|..||+ |.+. .+-.-=..+++.+.|...++.+
T Consensus 82 ~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hf-----llHg~HH~~P~D~~rLv~PP~~~~~l~~~~~~l~~~ 156 (237)
T PLN02434 82 AVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHY-----LLHGCHHKHPMDGLRLVFPPAATAILCVPFWNLIAL 156 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH-----HHHHHhhcCCCCCCCeecCcHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999995 222 2333 33449996 6442 1101112233333333222222
Q ss_pred hhccCCCchhhHHHHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHHHHHHHHhhcCCCCC
Q 020892 218 GFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFH 282 (320)
Q Consensus 218 G~~~~g~~~g~~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrri~~AH~lHH~~Ke~ 282 (320)
- ..+..+.++..|..+.-++|.++|..+.|. +++++|+|++++-|..||...++
T Consensus 157 ~-----~~~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~------~p~~~~~r~lkr~H~~HHfk~~~ 210 (237)
T PLN02434 157 F-----ATPATAPALFGGGLLGYVMYDCTHYFLHHG------QPSTDVLRNLKKYHLNHHFRDQD 210 (237)
T ss_pred H-----cchhHHHHHHHHHHHHHHHHHHHHHHHHhc------CcchHHHHHHHHHHHHHcCCCCC
Confidence 1 111222333345555557899999997773 34578999999999999975433
No 4
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=98.41 E-value=3.1e-06 Score=78.32 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhhhhhcCCCCCCCCC-CCCCCC--CcchHH-HHhhH-HHHHHHHHhhhc
Q 020892 147 FALSVGAAVGMEFWARWAHKALWHAS-LWHMHEKVIFGISLQSHHR-PREGPF--ELNDVF-AIINA-VPAIALLSFGFF 220 (320)
Q Consensus 147 ~~l~vga~v~MEf~A~~aHKylmHG~-lW~~H~~~~f~~~h~sHH~-p~~g~F--E~NDlF-aiifA-vpAIaLi~~G~~ 220 (320)
.+..+.+++.-+++-||+||..=+.. +|.+|+ -||. ++.-++ ..++.+ .++++ .-.+.++++|
T Consensus 96 ~l~~~~~~~~~D~~~Y~~HR~~H~~~~~w~~H~---------~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~~-- 164 (271)
T COG3000 96 ALQLLLAFLFLDLGYYWAHRLLHRVPLLWAFHK---------VHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLLG-- 164 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------hhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHhc--
Confidence 44456678899999999999877775 689999 9996 322222 344444 23332 1222333344
Q ss_pred cCCCchhhHHHHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHHHHHHHHhhcCCCCCCcce-----------eEe
Q 020892 221 HKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSDKFHGVPY-----------GLF 289 (320)
Q Consensus 221 ~~g~~~g~~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrri~~AH~lHH~~Ke~Gv~F-----------G~l 289 (320)
.. ...+++.+++-++.+++.|+++.+. .+.+. .+++-.-.+-|++||+......|| |.+
T Consensus 165 ---~~---~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~---~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~ 234 (271)
T COG3000 165 ---LS---PVAVALLFIFLLFWAVLIHSNLDLP-LPLGW---LRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTY 234 (271)
T ss_pred ---CC---HHHHHHHHHHHHHHHHHHhcCcccc-CCccc---ceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccC
Confidence 12 2345677788888899999997775 43332 233446677899999743122344 566
Q ss_pred eecchh
Q 020892 290 LGPKEL 295 (320)
Q Consensus 290 l~P~ey 295 (320)
..|++.
T Consensus 235 ~~~~~~ 240 (271)
T COG3000 235 HPPDER 240 (271)
T ss_pred CCCccc
Confidence 666665
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=97.42 E-value=0.00027 Score=73.78 Aligned_cols=131 Identities=22% Similarity=0.357 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhhhhhcCCCCCCCCCC-CCCCC-------CcchHHHHhhH
Q 020892 138 VPLAEMFGTFALSVGAAVGMEFWARWAHKALWHAS-LWHMHEKVIFGISLQSHHRP-REGPF-------ELNDVFAIINA 208 (320)
Q Consensus 138 ~p~~eM~~~~~l~vga~v~MEf~A~~aHKylmHG~-lW~~H~~~~f~~~h~sHH~p-~~g~F-------E~NDlFaiifA 208 (320)
+|+-+--+.++.++.=+..+|++-||+||.+=|.+ +|++|+ -||+. ...|+ |-.=++.++++
T Consensus 119 ~P~W~~~g~l~~~Llhv~~~Df~fYW~HRllH~~~LYwr~Hk---------vHHss~~~~P~Ts~~HP~~E~L~y~ll~~ 189 (620)
T PLN02869 119 MPLWRTDGVLITILLHMGPVEFLYYWLHRALHHHYLYSRYHS---------HHHSSIVTEPITSVIHPFAEHIAYFLLFA 189 (620)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh---------hccCCCCCCchhhhcCcHHHHHHHHHHHH
Confidence 34433323333333334458999999999765554 579999 89973 33333 21123345566
Q ss_pred HHHHHHHHhhhccCCCchhhHHHHhHHHhHhhhHhhhhhceeecC--c-ccCCcC---CCcHHHHHHHHHHHhhcCCCCC
Q 020892 209 VPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHK--R-FPVGPI---ADVPYFRRVAAAHQLHHSDKFH 282 (320)
Q Consensus 209 vpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGiaYffvHDglVH~--R-fp~g~~---~~~pYlrri~~AH~lHH~~Ke~ 282 (320)
+|.+.+++.|.. . .+ .+.+.+ .|+.+-..+.|- + +|..+. +-.+|+-.=...|.+||+. ++
T Consensus 190 IPLllli~~g~~---h---i~---t~~~yl---i~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd 256 (620)
T PLN02869 190 IPLLTTIFTGTA---S---IA---AFFGYI---SYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FR 256 (620)
T ss_pred HHHHHHhhcccc---h---HH---HHHHHH---HHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhcc-CC
Confidence 666655544421 0 11 011111 223332333441 1 121111 1123444446899999985 44
Q ss_pred CcceeEeee
Q 020892 283 GVPYGLFLG 291 (320)
Q Consensus 283 Gv~FG~ll~ 291 (320)
.|||+++.
T Consensus 257 -~NYGlfF~ 264 (620)
T PLN02869 257 -TNYSLFMP 264 (620)
T ss_pred -cCcccchH
Confidence 49998754
No 6
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=97.18 E-value=0.00098 Score=62.64 Aligned_cols=132 Identities=26% Similarity=0.337 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc-----cc--hhhhhhhcCCCCCCCCC-CCCC-CCCcchHHHHhhHHHHHHHHH
Q 020892 146 TFALSVGAAVGMEFWARWAHKALWHAS-----LW--HMHEKVIFGISLQSHHR-PREG-PFELNDVFAIINAVPAIALLS 216 (320)
Q Consensus 146 ~~~l~vga~v~MEf~A~~aHKylmHG~-----lW--~~H~~~~f~~~h~sHH~-p~~g-~FE~NDlFaiifAvpAIaLi~ 216 (320)
...+++.+++.-.+++|-.||+++|=- -| .+|. ..|.-||. |-+| .+-.--+.+.+.+.|--.++.
T Consensus 83 ~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hf-----l~HGcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~ 157 (240)
T KOG0539|consen 83 FSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHF-----LIHGCHHKLPMDGYRLVFPPTPFAILAAPFYLILS 157 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHH-----HHhcccccCCCCCceEecCCchHHHHHHHHHHHHH
Confidence 456777788889999999999999953 45 4555 34558886 6554 222223334555555444443
Q ss_pred hhhccCCCchhhHH-HHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHHHHHHHHhhcCC---CCCCc-------c
Q 020892 217 FGFFHKGLVPGLCF-GAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSD---KFHGV-------P 285 (320)
Q Consensus 217 ~G~~~~g~~~g~~f-g~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrri~~AH~lHH~~---Ke~Gv-------~ 285 (320)
+=+-.. .....| |+=+|+.+|-|. |=-|.|.+- ++.+|++.+++-|.=||.. +.-|. +
T Consensus 158 ~vl~~~--~~~a~faG~l~GYV~YDmt----HYyLHhg~p-----~~~~~~~~lK~yHl~HHfk~q~~GfGItS~lWD~V 226 (240)
T KOG0539|consen 158 LVLPHP--VAPAGFAGGLLGYVCYDMT----HYYLHHGSP-----PKRPYLKHLKKYHLNHHFKHQDLGFGITSSLWDYV 226 (240)
T ss_pred HhcCcc--hhhhhhccchhhhhhhhhh----hhhhhcCCC-----CCchHHHHHHHHHhhhhhhccccCccccHHHHHHH
Confidence 332111 111112 244788888888 555555333 3569999999999999963 33333 5
Q ss_pred eeEeeecc
Q 020892 286 YGLFLGPK 293 (320)
Q Consensus 286 FG~ll~P~ 293 (320)
||.+..++
T Consensus 227 FgTl~~~~ 234 (240)
T KOG0539|consen 227 FGTLGPLK 234 (240)
T ss_pred hccCCCCc
Confidence 66665554
No 7
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=93.80 E-value=0.44 Score=39.95 Aligned_cols=65 Identities=14% Similarity=0.128 Sum_probs=45.0
Q ss_pred hhhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhc---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 98 RKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQME---GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (320)
Q Consensus 98 r~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~---~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHK 166 (320)
|+..+|..+.--+.++++|+.-++...+-+-+.+... +++. .+...++++|.++|+=.+++|+||
T Consensus 31 ~r~~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~----~~tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 31 RKNATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPF----SWTLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3335677777778899999887777666666666664 2333 233446677788888888888887
No 8
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=93.02 E-value=0.87 Score=44.76 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=44.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhhhhcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhhhhhcCCCCC
Q 020892 111 VMSSFGITSMAVMAVYYRFWWQMEGG--EVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHAS-LWHMHEKVIFGISLQ 187 (320)
Q Consensus 111 ~~ss~g~~~~a~~avy~rf~w~~~~g--~~p~~eM~~~~~l~vga~v~MEf~A~~aHKylmHG~-lW~~H~~~~f~~~h~ 187 (320)
+|+.+-+.+-++..--|.-.| +.=| +.||.+.+.++.+++ +.-||.-||+||++=|-. -|++|+
T Consensus 95 w~sll~~~~~~m~i~gyskl~-d~i~~~~~gw~~~~~~i~~fl---fF~Df~iYw~HR~lH~~~vy~~LH~--------- 161 (312)
T KOG0872|consen 95 WMSLLTVPWFLMEIRGYSKLY-DNIGILEYGWFLLFVSIFLFL---FFTDFGIYWAHRELHHRGVYKRLHK--------- 161 (312)
T ss_pred hHHHHhHHHHHHHHhhhHHhh-hccCcccccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhcc---------
Confidence 344444444333333333333 3335 788888777776654 578999999999998865 589999
Q ss_pred CCCC
Q 020892 188 SHHR 191 (320)
Q Consensus 188 sHH~ 191 (320)
-||.
T Consensus 162 ~HH~ 165 (312)
T KOG0872|consen 162 PHHI 165 (312)
T ss_pred hhhh
Confidence 9995
No 9
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=88.05 E-value=2.8 Score=40.97 Aligned_cols=56 Identities=18% Similarity=0.405 Sum_probs=38.1
Q ss_pred HHHHHHHHhh-hhhhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-hhhh
Q 020892 120 MAVMAVYYRF-WWQMEGGEV--PLAEMFGTFALSVGAAVGMEFWARWAHKALWHASLW-HMHE 178 (320)
Q Consensus 120 ~a~~avy~rf-~w~~~~g~~--p~~eM~~~~~l~vga~v~MEf~A~~aHKylmHG~lW-~~H~ 178 (320)
..+.+.|... .|.+..+.- ++.+|+..+++++ +.-|++=||+||-+=|+++- .+|+
T Consensus 94 p~~~~~y~~~~~~~~~~~~plPt~~~~l~~l~i~~---liEd~~fY~~HRL~H~~~~Yk~iHK 153 (283)
T KOG0873|consen 94 PLTLVSYPFVEWFGLPSGAPLPSWKEMLAQLVVFF---LIEDIGFYWSHRLFHHKWLYKYIHK 153 (283)
T ss_pred hHHHHhHHHHHHhCCCcCCCCCcHHHHHHHHHHHH---HHHHHHHHHHHHHhcchHHHHHHHh
Confidence 3444555555 344543333 5888888877764 56789999999988777777 6777
No 10
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=87.26 E-value=0.73 Score=44.40 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhccc-hhhh
Q 020892 149 LSVGAAVGMEFWARWAHKAL-WHASLW-HMHE 178 (320)
Q Consensus 149 l~vga~v~MEf~A~~aHKyl-mHG~lW-~~H~ 178 (320)
=++.+++...-|.|+.|||+ |-.+|. ++|.
T Consensus 125 q~f~aflviDtWQYF~HRymH~NK~LYk~iHs 156 (287)
T KOG0874|consen 125 QFFAAFLVIDTWQYFLHRYMHMNKFLYKHIHS 156 (287)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 35678888899999999985 334577 6777
No 11
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=86.32 E-value=5.8 Score=35.58 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcC--CCCcHHHH-HHHHHHHHHHHHHHH
Q 020892 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEG--GEVPLAEM-FGTFALSVGAAVGME 158 (320)
Q Consensus 90 ~~~~~~~~r~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~--g~~p~~eM-~~~~~l~vga~v~ME 158 (320)
..|.+|+.|+ ++-++||-..+.++++--|+|-.+. .|+|-.-. +.++++|..+++|..
T Consensus 55 ~~Vs~RM~rR-----------m~~~~GiP~~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~gllGis 115 (153)
T PF11947_consen 55 EVVSNRMLRR-----------MAVFVGIPTALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLGLLGIS 115 (153)
T ss_pred HHHHHHHHHH-----------HHHHhchHHHHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHHhhh
Confidence 3677777764 3456677666666666666666653 57776555 677777777777753
No 12
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=78.64 E-value=29 Score=33.41 Aligned_cols=201 Identities=14% Similarity=0.101 Sum_probs=98.5
Q ss_pred HHHHHHHhhhhch--------hhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 91 RVAEKLARKRSER--------FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (320)
Q Consensus 91 ~~~~~~~r~~ser--------~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~ 162 (320)
-+.-|+++|+..| .-|+.+ ...++-|...++...+.-+.--.. ..|.......+.+.+++.+.+|.+.+
T Consensus 59 l~~l~~s~kp~d~~HpyGh~k~E~l~s-l~~~~~i~~~g~~i~~~a~~~~~~--~~~~~~~~~~~~v~l~s~~~~~~l~~ 135 (304)
T COG0053 59 LIGLRISSKPPDRDHPYGHGKAETLAS-LIVSILIFAAGFEILLEAIKRLIS--PQPVEPPLLALGVALISIVIKEALYR 135 (304)
T ss_pred HHHHHHhcCCCCCCCCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4567888888765 333333 333334444444444444433333 33333345567777889999999999
Q ss_pred HHHHHHhhhccchhhhhhhc-CCCCCCCCCCCCCCCCcchHHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhh
Q 020892 163 WAHKALWHASLWHMHEKVIF-GISLQSHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGM 241 (320)
Q Consensus 163 ~aHKylmHG~lW~~H~~~~f-~~~h~sHH~p~~g~FE~NDlFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGi 241 (320)
+.+|--==.. .. ......|| ++|++.-+-++.+++..++|+.......++..++-+.-+.+.+
T Consensus 136 ~~~~~~kk~~--------S~aL~Ada~h~--------~sD~~ts~~~lvgl~~~~~g~~~lD~i~a~~I~~~Il~~~~~~ 199 (304)
T COG0053 136 YLRRVGKKTN--------SQALIADALHH--------RSDVLTSLAVLVGLLGSLLGWPWLDPLAALLISLYILKTGFRL 199 (304)
T ss_pred HHHHHHHHhC--------CHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887531110 00 00111233 4599988888777776666732111111111223334456667
Q ss_pred HhhhhhceeecCcccCCcCCCcHHHHHHHHHH----HhhcC-CC-CCCcceeEee--ecchhhhcCChHHHHHHHHHHhh
Q 020892 242 AYMFVHDGLVHKRFPVGPIADVPYFRRVAAAH----QLHHS-DK-FHGVPYGLFL--GPKELEEVGGLEELEKEISKRIK 313 (320)
Q Consensus 242 aYffvHDglVH~Rfp~g~~~~~pYlrri~~AH----~lHH~-~K-e~Gv~FG~ll--~P~eye~vgg~eeL~~~~~~~~~ 313 (320)
++--++.. .=++++ .......+++.... .+|.- .. .+..-|.=+. ++... .+.-.+++..+++++++
T Consensus 200 ~~~s~~~L-~d~~~~---~~~~~~i~~~i~~~~~V~~v~~lr~R~~G~~~~id~~i~v~~~l-s~~eah~I~~~ie~~i~ 274 (304)
T COG0053 200 FKESVNEL-MDAALD---PEDLEKIRAIILSVPGVKGVHDLRTRKSGSRIFIDVHIEVDPDL-SLEEAHEIADEVEKRIK 274 (304)
T ss_pred HHHHHHHH-hCcCCC---HHHHHHHHHHHhcCCcceeeecceeeeeCCeEEEEEEEEECCCC-ChHHHHHHHHHHHHHHH
Confidence 77777766 233332 22233444444433 36663 22 2222222111 11111 12335666666666666
Q ss_pred hc
Q 020892 314 SY 315 (320)
Q Consensus 314 ~~ 315 (320)
..
T Consensus 275 ~~ 276 (304)
T COG0053 275 KE 276 (304)
T ss_pred Hh
Confidence 43
No 13
>PLN02220 delta-9 acyl-lipid desaturase
Probab=77.38 E-value=46 Score=32.52 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=18.6
Q ss_pred cCcccCCcCCCcHHHHHHHH----HHHhhcCCC
Q 020892 252 HKRFPVGPIADVPYFRRVAA----AHQLHHSDK 280 (320)
Q Consensus 252 H~Rfp~g~~~~~pYlrri~~----AH~lHH~~K 280 (320)
.|.|...-.++|..+-.+.. -|--||.-.
T Consensus 221 ~rpy~~~d~srN~~~lallt~GEgwHNnHHafP 253 (299)
T PLN02220 221 SRTWKTKDTSRNVWWLSLFTMGESWHNNHHAFE 253 (299)
T ss_pred CCCCCCCCCcchhHHHHHHhccccccccccCCc
Confidence 45566666666666655543 599999753
No 14
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=75.66 E-value=54 Score=29.14 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhcCCCCCCCC----
Q 020892 115 FGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHEKVIFGISLQSHH---- 190 (320)
Q Consensus 115 ~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKylmHG~lW~~H~~~~f~~~h~sHH---- 190 (320)
+++-...+++||-=++...+++- |-.++.+|++.+..+.=.-. .+|..++ +....-+|.-
T Consensus 11 l~~Ff~~~~~vY~~~t~~~~~~~----E~~Gt~aL~ls~~l~~mig~----------yl~~~~r--r~~~rPED~~daEI 74 (137)
T PF12270_consen 11 LAVFFLVVAVVYGFWTKWSGDGG----EWVGTVALVLSGGLALMIGF----------YLRFTAR--RIGPRPEDREDAEI 74 (137)
T ss_pred HHHHHHHHHHHHHHHHhccCCCC----CcchHHHHHHHHHHHHHHHH----------HHHHHHh--hCCCCCcccccccc
Confidence 33444577888888887775433 78888888877655432211 1233333 1233333433
Q ss_pred ---CCCCCCCCcchHHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhhH
Q 020892 191 ---RPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMA 242 (320)
Q Consensus 191 ---~p~~g~FE~NDlFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGia 242 (320)
-..-|.|.-....-+.-| .+++++.+|+-.. + ..+.+|++++++++.
T Consensus 75 ~dgAGe~GfFsP~SwWPl~la-~~~al~~lGla~g-~---Wl~~iG~~~~i~~~~ 124 (137)
T PF12270_consen 75 ADGAGELGFFSPHSWWPLVLA-AAAALVFLGLAFG-W---WLILIGAVLLIVAVV 124 (137)
T ss_pred ccCCCCcCcCCCccHhHHHHH-HHHHHHHHHHHHH-H---HHHHHHHHHHHHHHH
Confidence 134567877777755444 2667777886311 1 234566766666554
No 15
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=67.40 E-value=5.7 Score=32.89 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=32.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHH-----HHHHHHHHHHHH
Q 020892 106 YLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM-----FGTFALSVGAAV 155 (320)
Q Consensus 106 Y~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM-----~~~~~l~vga~v 155 (320)
=+++.+|-.+-++.++-.+|||= .+|++|+.+. +..|++.+++++
T Consensus 32 ~W~~~~m~~lm~~Gl~WlvvyYl-----~~~~~P~~~lG~WN~~IGfg~~~~G~~ 81 (87)
T PRK02251 32 RWFVPLFVALMIIGLIWLVVYYL-----SNGSLPIPALGAWNLVIGFGLIMAGFG 81 (87)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh-----hCCCcCcccccchhHHHHHHHHHHHHH
Confidence 36777888888888888889884 5788997666 455555555543
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=65.32 E-value=84 Score=29.98 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHhhhh-ch-------hhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 91 RVAEKLARKRS-ER-------FTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (320)
Q Consensus 91 ~~~~~~~r~~s-er-------~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~ 162 (320)
-++-|+++|.. +| ..++.+ ...++.+..+++.++|-...--.++-+++.. . .+++.+.+++.-++..|
T Consensus 65 l~a~~~s~kp~d~~hpyG~~r~E~l~a-l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~--~-~~~v~~~~~~~~~~~~~ 140 (312)
T PRK03557 65 LLAVQFSRRPPTIRHTFGWLRLTTLAA-FVNAIALVVITILIVWEAIERFRTPRPVAGG--M-MMAIAVAGLLANILSFW 140 (312)
T ss_pred HHHHHHhcCCCCCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCccccch--H-HHHHHHHHHHHHHHHHH
Confidence 45677777664 43 444443 3344444444544444333222233233321 1 22233445555666666
Q ss_pred HHHH
Q 020892 163 WAHK 166 (320)
Q Consensus 163 ~aHK 166 (320)
+.++
T Consensus 141 ~~~~ 144 (312)
T PRK03557 141 LLHH 144 (312)
T ss_pred HHhc
Confidence 6554
No 17
>PLN02434 fatty acid hydroxylase
Probab=62.03 E-value=30 Score=32.93 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHH-HHHHHHHHhhcCCCCCC
Q 020892 206 INAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYF-RRVAAAHQLHHSDKFHG 283 (320)
Q Consensus 206 ifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYl-rri~~AH~lHH~~Ke~G 283 (320)
+...+++.++..|+..............+|+.++-++=-.+|-.+-|.+ +++++. +.....|..||....|.
T Consensus 61 iw~pvv~~~~~~~~~~~~~~~~~~~~~~~G~~~wtl~EY~lHRflfH~~------p~~~~~~~~hfllHg~HH~~P~D~ 133 (237)
T PLN02434 61 IWLPVVCWCLVKSVRMGLPLSAVVLMVAFGVFIWTLLEYILHRFLFHIK------TKSYWGNTAHYLLHGCHHKHPMDG 133 (237)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC------CcchHHHHHHHHHHHHhhcCCCCC
Confidence 3333344555556532211111122244677777777667788877744 445555 44566899999875554
No 18
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=62.01 E-value=1.2e+02 Score=29.80 Aligned_cols=134 Identities=18% Similarity=0.270 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhhc-hhhh------hHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 90 ARVAEKLARKRSE-RFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWAR 162 (320)
Q Consensus 90 ~~~~~~~~r~~se-r~tY------~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~ 162 (320)
.-+|.+++||.+. |+|| .++|..+.+-+...++..+|=..-.-.+.-+++...|+.. .+.+++.==+.+|
T Consensus 67 al~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~~~ml~v---a~~GL~vN~~~a~ 143 (296)
T COG1230 67 ALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHYSGMLVV---AIIGLVVNLVSAL 143 (296)
T ss_pred HHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHH---HHHHHHHHHHHHH
Confidence 3567888887754 4666 4466666666666666666654444445567777777322 2222222223344
Q ss_pred HHHHHHhhhccchhhhhhhcCCCCCCCCCCCCCCC--CcchHHHHhhHHH-HHHHHHhhhccCCCchhhHHHHhHHHhHh
Q 020892 163 WAHKALWHASLWHMHEKVIFGISLQSHHRPREGPF--ELNDVFAIINAVP-AIALLSFGFFHKGLVPGLCFGAGLGITVF 239 (320)
Q Consensus 163 ~aHKylmHG~lW~~H~~~~f~~~h~sHH~p~~g~F--E~NDlFaiifAvp-AIaLi~~G~~~~g~~~g~~fg~GLGIT~Y 239 (320)
..||. |+ +- .+-+|.| -++|+-.=+-++. +++..+.|. .+..-..++.+++...
T Consensus 144 ll~~~--~~----------------~~-lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w----~~~Dpi~si~i~~lil 200 (296)
T COG1230 144 LLHKG--HE----------------EN-LNMRGAYLHVLGDALGSVGVIIAAIVIRFTGW----SWLDPILSIVIALLIL 200 (296)
T ss_pred HhhCC--Cc----------------cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CccchHHHHHHHHHHH
Confidence 44443 11 00 1223322 2588874444333 333334442 1222345556666666
Q ss_pred hhHhhhhhce
Q 020892 240 GMAYMFVHDG 249 (320)
Q Consensus 240 GiaYffvHDg 249 (320)
--+|-...|-
T Consensus 201 ~~a~~l~k~s 210 (296)
T COG1230 201 SSAWPLLKES 210 (296)
T ss_pred HHHHHHHHHH
Confidence 6677777776
No 19
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=60.05 E-value=28 Score=31.89 Aligned_cols=46 Identities=20% Similarity=0.212 Sum_probs=34.7
Q ss_pred HHHHhhcCCCCCCcceeEeeecchh--hhcCChHHHHHHHHHHhhhccC
Q 020892 271 AAHQLHHSDKFHGVPYGLFLGPKEL--EEVGGLEELEKEISKRIKSYNR 317 (320)
Q Consensus 271 ~AH~lHH~~Ke~Gv~FG~ll~P~ey--e~vgg~eeL~~~~~~~~~~~~~ 317 (320)
+.|..||....+. +|-+.-+.-.+ |+.+=-+.||+.+....+..-+
T Consensus 128 ~~H~~HH~aPh~~-~YCI~tGw~N~~Ld~~~f~~~lE~~i~~~tG~~PR 175 (178)
T PF10520_consen 128 KHHRIHHVAPHDT-NYCITTGWLNPPLDKIRFWRRLERVITFLTGVKPR 175 (178)
T ss_pred hhhhccccCcccC-CeEeecccchHHHHHhhHHHHHHHHHHHHhCCCCC
Confidence 5688999876666 88887776655 7778889999999887765433
No 20
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=59.52 E-value=1.2e+02 Score=26.32 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=22.5
Q ss_pred hhhhcCCCC--cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhc
Q 020892 130 WWQMEGGEV--PLAEMFGTFALSVGAAV-GMEFWARWAHKALWHAS 172 (320)
Q Consensus 130 ~w~~~~g~~--p~~eM~~~~~l~vga~v-~MEf~A~~aHKylmHG~ 172 (320)
.|+..+++. +.+.+.+....+++..+ +.=..+|+. ++++...
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~a~~i-~~~~~~~ 90 (170)
T PF06930_consen 46 GWFVGNGEGIVKLTLASALIIAVIFYIFGGVFIMAYLI-HWMMKTF 90 (170)
T ss_pred HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 477766763 34444333333333333 356667777 6677665
No 21
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=56.54 E-value=41 Score=29.39 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=31.0
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020892 103 RFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKALWHAS 172 (320)
Q Consensus 103 r~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKylmHG~ 172 (320)
|.+..+|.++|. |...+.+-.+-+-+.|.. ..+ ...++.+++.+-..+|+.|+|+..-.
T Consensus 55 r~gN~~AtiaD~-~La~~~iW~~~~~~~~~~-------~~~---~~~allsA~~i~v~E~fFH~yl~~~~ 113 (136)
T PF10710_consen 55 RTGNIVATIADF-GLAFLVIWLMGYILTGNY-------VSI---AWAALLSAVLIGVGEYFFHRYLLRNV 113 (136)
T ss_pred CCCChhHHHHHH-HHHHHHHHHHHHHHhccc-------hhH---HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456677777776 333333333333333311 111 11122344566678999999997654
No 22
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=53.88 E-value=9.6 Score=37.99 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=0.0
Q ss_pred cchHHHHhhHHHHHHHHHhhhccCCCchhhHHH------HhHHHhHhhhHhhhhhceeecCcccC-----------CcCC
Q 020892 199 LNDVFAIINAVPAIALLSFGFFHKGLVPGLCFG------AGLGITVFGMAYMFVHDGLVHKRFPV-----------GPIA 261 (320)
Q Consensus 199 ~NDlFaiifAvpAIaLi~~G~~~~g~~~g~~fg------~GLGIT~YGiaYffvHDglVH~Rfp~-----------g~~~ 261 (320)
+|-+.+..--+.+...++...+.. .+..+.|+ .|||||+ .| |--.-||=||. +-.+
T Consensus 41 ~nv~~~~~l~~~a~ygl~~~~~~~-~w~t~~~~~~l~~v~glgITa---g~---HRlwsHRSyKa~kpLr~fla~~~~~A 113 (321)
T KOG1600|consen 41 RNVVLFSALHIVALYGLLAPPFSA-KWETLLFAFFLYAVGGLGITA---GY---HRLWSHRSYKAPKPLRYFLAYCNTLA 113 (321)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHhhceeee---eh---hhhcccccccCCccHHHHHHHHHHHh
Q ss_pred CcHHHHHHHHHHHhhcCCCCCCc--------------ceeEeeecchhhhcCC---hHHHHHH
Q 020892 262 DVPYFRRVAAAHQLHHSDKFHGV--------------PYGLFLGPKELEEVGG---LEELEKE 307 (320)
Q Consensus 262 ~~pYlrri~~AH~lHH~~Ke~Gv--------------~FG~ll~P~eye~vgg---~eeL~~~ 307 (320)
=-.=.....+.|++||+-.+--. -|.+.---.+++|.|| ++.||++
T Consensus 114 ~Qg~~~~WvrdHR~HHk~tdTD~DPhn~~rGF~FsHvgWl~~~k~p~~k~~G~~~dvsDL~~d 176 (321)
T KOG1600|consen 114 FQGDIIDWVRDHRVHHKFTDTDADPHNPRRGFWFSHVGWLLDKKHPQVKECGGRLDVSDLEAD 176 (321)
T ss_pred ccCChhHHHhhhhhhccccccCCCCCCcccchhhhhhhhHhccCChHHHhhcCcCChhHhhhC
No 23
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=52.88 E-value=66 Score=28.71 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHHhhhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHH-HHHHHHHHHHHHHH
Q 020892 93 AEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEM-FGTFALSVGAAVGM 157 (320)
Q Consensus 93 ~~~~~r~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM-~~~~~l~vga~v~M 157 (320)
.++.+++++.|.-+..-+.++ +=+++++|+.|. +..|.-| =.|..+..+++++.
T Consensus 83 id~~A~~~~~~~~w~gl~~l~-------~q~~~l~rLTf~----e~sWDvMEPVTYfv~~~~~i~~ 137 (180)
T PF04678_consen 83 IDEKAEKRARRLLWGGLALLV-------VQFGILARLTFW----EYSWDVMEPVTYFVGYGTSILG 137 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh----ccccchhhhHHHHHhHHHHHHH
Confidence 345555666666655544444 233444444443 2333434 34455555554443
No 24
>PLN02220 delta-9 acyl-lipid desaturase
Probab=50.56 E-value=36 Score=33.22 Aligned_cols=36 Identities=31% Similarity=0.599 Sum_probs=24.4
Q ss_pred HhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHH----------------HHHHHHhhcC
Q 020892 232 AGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRR----------------VAAAHQLHHS 278 (320)
Q Consensus 232 ~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrr----------------i~~AH~lHH~ 278 (320)
.|+|||+ ..|=-+.|+=|+.. +.+|. ..+.|++||+
T Consensus 68 t~lGiT~------GyHRl~sHrsfka~-----~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~ 119 (299)
T PLN02220 68 TGLSITF------SYHRNLAHRSFKLP-----KWLEYPFAYSALFALQGDPIDWVSTHRFHHQ 119 (299)
T ss_pred HHHHHHH------HHHHHHHhhcCcCc-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4566665 35888999888743 33333 4589999995
No 25
>PLN02505 omega-6 fatty acid desaturase
Probab=47.03 E-value=60 Score=32.65 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCcchHHHHhhHHHHHHHHHhhhc----cCCCchhh-------HHHHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHH
Q 020892 197 FELNDVFAIINAVPAIALLSFGFF----HKGLVPGL-------CFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPY 265 (320)
Q Consensus 197 FE~NDlFaiifAvpAIaLi~~G~~----~~g~~~g~-------~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pY 265 (320)
||+|+.=++..-+-.++++...+. .....|.. ..++-+|..+-|+ +.+-||. -|+.| ...+.-|..
T Consensus 45 f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l-~vl~HDc-gH~s~-~~~~~lN~~ 121 (381)
T PLN02505 45 FKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGV-WVIAHEC-GHHAF-SDYQWLDDT 121 (381)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-cchhh-hCChHHHHH
Q ss_pred H------------HHHHHHHHhhcCCCCCCcceeEeeecchhhhcCChHHH
Q 020892 266 F------------RRVAAAHQLHHSDKFHGVPYGLFLGPKELEEVGGLEEL 304 (320)
Q Consensus 266 l------------rri~~AH~lHH~~Ke~Gv~FG~ll~P~eye~vgg~eeL 304 (320)
+ ...+.-|..||...+.- ..--.++|+++++.....++
T Consensus 122 vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~-~~D~~~~P~~~~~~~~~~~~ 171 (381)
T PLN02505 122 VGLVLHSALLVPYFSWKYSHRRHHSNTGSL-ERDEVFVPKKKSALPWYSKY 171 (381)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhccCCC-CCCccccCcCHHHHhHHHHH
No 26
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=45.89 E-value=1.4e+02 Score=25.79 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=27.9
Q ss_pred HHHHhhhhhhc--CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 124 AVYYRFWWQME--GGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (320)
Q Consensus 124 avy~rf~w~~~--~g~~p~~eM~~~~~l~vga~v~MEf~A~~ 163 (320)
.|-+.+-.+|+ |-+.+..=|+..+.+.+.++++..++.||
T Consensus 69 ~VqL~yFLHm~~k~~~~~~~~if~gi~va~~tv~a~~~~iw~ 110 (110)
T TIGR02908 69 AFQLYYFMHMKDKGHEVPAQFIYGGVFVTMLVVLAFTTITWW 110 (110)
T ss_pred HHHHHHheeeCCCccchHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566667775 34555556677777778888888888775
No 27
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=45.70 E-value=2.6e+02 Score=26.27 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=11.0
Q ss_pred cchHHHHhhHHHHHHHHHhh
Q 020892 199 LNDVFAIINAVPAIALLSFG 218 (320)
Q Consensus 199 ~NDlFaiifAvpAIaLi~~G 218 (320)
+||++.=+.++.++.+.++|
T Consensus 155 ~~D~~~s~~vl~~~~~~~~g 174 (299)
T PRK09509 155 QSDVMMNGAILLALGLSWYG 174 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 68888544444444444444
No 28
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=44.84 E-value=84 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.064 Sum_probs=38.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (320)
Q Consensus 108 ~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHK 166 (320)
.+...|++|...+.+++..+-..|. .-+...+..+.+.+.+-++.-.++|.+||
T Consensus 28 a~s~~~tlG~~lilig~~l~~~~~~-----~~~k~lli~~~~~lt~Pv~sh~iaraa~~ 81 (81)
T PF03334_consen 28 AASKADTLGAILILIGLALYFGSSW-----VSLKLLLIILFLLLTNPVASHAIARAAYR 81 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5778899999999887776653332 22344567777777788888888888775
No 29
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=43.86 E-value=2.4e+02 Score=25.33 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=51.4
Q ss_pred HHHHHHHhhh-hchhhh------hHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 91 RVAEKLARKR-SERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (320)
Q Consensus 91 ~~~~~~~r~~-ser~tY------~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~ 163 (320)
-++.|+.+|+ .+|.+| .+++...++.+..+++.+.+=.+..-+++.+.+.. ...+.+.+.+++...+.+++
T Consensus 36 l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~ 113 (268)
T TIGR01297 36 LLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPEPEIDG--GTMLIVAIVGLIVNLILALY 113 (268)
T ss_pred HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc--hhHHHHHHHHHHHHHHHHHH
Confidence 4456666665 344443 13333344444444544444333332444322222 22233445556666666766
Q ss_pred HHHHHhhhccchhhhhhhcCCCCCCCCCC---CCCCCCcchHHHHhhHHHHHHHHHhh
Q 020892 164 AHKALWHASLWHMHEKVIFGISLQSHHRP---REGPFELNDVFAIINAVPAIALLSFG 218 (320)
Q Consensus 164 aHKylmHG~lW~~H~~~~f~~~h~sHH~p---~~g~FE~NDlFaiifAvpAIaLi~~G 218 (320)
..+. | ++ .+.+ .++.--++|++.-+.++.++.+..+|
T Consensus 114 ~~~~---~-----~~----------~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~ 153 (268)
T TIGR01297 114 LHRV---G-----HR----------LGSLALRAAALHVLSDALSSVGVLIGALLIYFG 153 (268)
T ss_pred HHHh---C-----cc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6653 1 11 1111 12223377888766666666666665
No 30
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=43.01 E-value=34 Score=26.57 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=23.7
Q ss_pred hHhhhhhceeecCcccCCcCCCcHHH------------HHHHHHHHhhcCC
Q 020892 241 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQLHHSD 279 (320)
Q Consensus 241 iaYffvHDglVH~Rfp~g~~~~~pYl------------rri~~AH~lHH~~ 279 (320)
....+.||. +|+++...+.- +.++ ...+..|..||..
T Consensus 14 ~~~~~~H~~-~H~~~~~~~~~-n~~~~~~~~~~~~~~~~~~~~~H~~HH~~ 62 (122)
T cd01060 14 GLTVLAHEL-GHRSFFRSRWL-NRLLGALLGLALGGSYGWWRRSHRRHHRY 62 (122)
T ss_pred HHHHHHHHH-hhhhhhccccH-HHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 345667999 99988533222 2333 3457789999963
No 31
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=40.59 E-value=79 Score=29.32 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=21.7
Q ss_pred hHhhhhhceeecCcccCCcCCCcHHH------------HHHHHHHHhhcCC
Q 020892 241 MAYMFVHDGLVHKRFPVGPIADVPYF------------RRVAAAHQLHHSD 279 (320)
Q Consensus 241 iaYffvHDglVH~Rfp~g~~~~~pYl------------rri~~AH~lHH~~ 279 (320)
..+.+.||. .|+.+--.+.-| ..+ ...+..|..||..
T Consensus 57 ~~~~~~He~-~H~~~~~~~~~N-~~~g~l~~~~~~~~~~~~~~~H~~HH~~ 105 (285)
T cd03511 57 ALFARWHEC-VHGTAFATRWLN-DAVGQIAGLMILLPPDFFRWSHARHHRY 105 (285)
T ss_pred HHHHHHHHh-hcccccCCchHH-HHHHHHHHHHhcCChHHHHHHHHHHhcC
Confidence 457788999 676653221111 111 2447889999963
No 32
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=39.01 E-value=38 Score=32.55 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCCCCcchHHHHhhHHHHHHHHHhhh-c-cCCCchhhHHHHhHHHhHhhhHhhhhhceeecCcccCCcCCC---------
Q 020892 194 EGPFELNDVFAIINAVPAIALLSFGF-F-HKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIAD--------- 262 (320)
Q Consensus 194 ~g~FE~NDlFaiifAvpAIaLi~~G~-~-~~g~~~g~~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~--------- 262 (320)
++-|+.|.....+-.....+.++.+. . ..+++..++.++-+|.+..-.++...||. .|..+--.+..|
T Consensus 9 ~~L~~~~~~~~~~~~~~v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~-~H~~~f~~~~~N~~~g~~~~~ 87 (289)
T cd03508 9 KKLFGPDPLTKWVVLGVVLLQIITAYLLRDSSWWKILLVAYFFGGTINHSLFLAIHEI-SHNLAFGKPLWNRLFGIFANL 87 (289)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHhhcCChHHHHHHHHHHHH
Confidence 44667776664333222222222221 1 12222223344455666655567778999 565542111111
Q ss_pred ---cHHHHHHHHHHHhhcCC
Q 020892 263 ---VPYFRRVAAAHQLHHSD 279 (320)
Q Consensus 263 ---~pYlrri~~AH~lHH~~ 279 (320)
.||.-..+.-|..||..
T Consensus 88 ~~g~p~~~~~r~~H~~HH~~ 107 (289)
T cd03508 88 PIGVPYSISFKKYHLEHHRY 107 (289)
T ss_pred HhcCChhhHHHHHHHHhccC
Confidence 12322356789999974
No 33
>PLN02598 omega-6 fatty acid desaturase
Probab=38.89 E-value=97 Score=31.60 Aligned_cols=43 Identities=26% Similarity=0.538 Sum_probs=23.6
Q ss_pred HHHhHhhhHhhhhhceeecCcccCCcCCC------------cHHHHHHHHHHHhhcCC
Q 020892 234 LGITVFGMAYMFVHDGLVHKRFPVGPIAD------------VPYFRRVAAAHQLHHSD 279 (320)
Q Consensus 234 LGIT~YGiaYffvHDglVH~Rfp~g~~~~------------~pYlrri~~AH~lHH~~ 279 (320)
+|..+-| .+.+.||. -|+.|--.+.-| .|| ...+.-|..||..
T Consensus 132 ~G~~~~~-l~vl~Hec-~H~s~~~~~~lN~~vG~~~~~~ll~p~-~~wr~~H~~HH~~ 186 (421)
T PLN02598 132 LGTAITG-FFVIGHDC-GHNSFSKNQLVEDIVGTIAFTPLIYPF-EPWRIKHNTHHAH 186 (421)
T ss_pred HHHHHHH-HHHHHHhc-cccCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHccC
Confidence 4444444 47888999 566552111000 111 3456789999963
No 34
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=38.84 E-value=2.6e+02 Score=24.31 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHH
Q 020892 90 ARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (320)
Q Consensus 90 ~~~~~~~~r~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v 155 (320)
....+++.+-+++...|-.-..+-..|+.|.+.+.. . ||. |.||+..+++.+.+.+
T Consensus 85 ~ea~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~l-------f-gg~--~~~~~~a~i~g~~~~~ 140 (193)
T PF06738_consen 85 EEAIERLDEIDREPPRYPPWLVILAAGLASAAFALL-------F-GGS--WIDMIVAFILGLLVGL 140 (193)
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH-------H-CCC--HHHHHHHHHHHHHHHH
Confidence 455566666665553443333333333333222221 2 554 7888776666554433
No 35
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=38.83 E-value=77 Score=29.90 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=37.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 108 ~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKy 167 (320)
.+...+++|+..++++++-|-+ +.+..+.+..+++.+.+++.+-++.-.+|+.+++.
T Consensus 39 AATKa~TLGv~LILlgv~l~~~---~~~~~~slklLLiIvFllLTaPVaSHaIARAAyr~ 95 (197)
T PRK12585 39 AAGISNTFGVSLLLFATVGYFF---HSGEGFNARVLLAVLFIFLTTPVASHLINRAAYDT 95 (197)
T ss_pred ccccchhhhHHHHHHHHHHHHH---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567788888887766543222 11122334555777778888888999999988764
No 36
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=38.35 E-value=1.3e+02 Score=26.47 Aligned_cols=28 Identities=29% Similarity=0.499 Sum_probs=19.9
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHHHHHHH
Q 020892 128 RFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (320)
Q Consensus 128 rf~w~~~~g~~p~~eM~~~~~l~vga~v 155 (320)
|.--+++.|+.|-.+|+-.+++++|+++
T Consensus 56 ~~~~~~~~G~~p~~~l~~~~~~~~gg~L 83 (148)
T PRK11463 56 RAQRKLARGELPAAELLDGLLLAVAGVL 83 (148)
T ss_pred HHHHHHHCCCCcHHHHHHhHHHHHHHHH
Confidence 3334567799999999777777666654
No 37
>COG3174 Predicted membrane protein [Function unknown]
Probab=37.07 E-value=2.2e+02 Score=29.13 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHHHHHH-HHHHHHHHHH----------HHHHHHHHhhhccchhhh
Q 020892 135 GGEVPLAEMFGTFALS-VGAAVGMEFW----------ARWAHKALWHASLWHMHE 178 (320)
Q Consensus 135 ~g~~p~~eM~~~~~l~-vga~v~MEf~----------A~~aHKylmHG~lW~~H~ 178 (320)
++++-++.+++-++.+ +|+..+||-. -=.+-|+-+|+++|++-.
T Consensus 43 ~~~~g~tt~iall~~f~~G~la~~~~~~aaa~~~~~~~lL~~k~~lh~~~~~ls~ 97 (371)
T COG3174 43 DRDLGVTTPIALLATFALGALAGMGDLEAAAGGIVLALLLASKEPLHRFLRRLSW 97 (371)
T ss_pred hhccCcchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhHHHHHHHHhhcCH
Confidence 6677676665444444 4556666652 235689999999998766
No 38
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=36.75 E-value=1.6e+02 Score=25.04 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=22.4
Q ss_pred HHHhhhhhhcCCCCcHHHHHHHHHHHHHHHH
Q 020892 125 VYYRFWWQMEGGEVPLAEMFGTFALSVGAAV 155 (320)
Q Consensus 125 vy~rf~w~~~~g~~p~~eM~~~~~l~vga~v 155 (320)
+..|..-+++.|+.|-.||.-.+.+.+|++.
T Consensus 49 ~~~~~~~~~~~g~~p~~~~~~~~~~~~gg~L 79 (119)
T PF04186_consen 49 ALRRLQQSLRQGEMPGEELLDGALLAVGGVL 79 (119)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 3344444566899999999888887777764
No 39
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=36.15 E-value=1.2e+02 Score=25.87 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=42.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhcCC-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGG-----EVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 108 ~aa~~ss~g~~~~a~~avy~rf~w~~~~g-----~~p~~eM~~~~~l~vga~v~MEf~A~~aHKy 167 (320)
-+...+++|+..+.+++..|-..+.-+.| .+-+.+.+..+.+++.+=++--.+++.+|+.
T Consensus 37 Aatk~~TlG~~lil~g~~l~~~~~~~~~~~~~~~~~~~k~lli~~f~~lT~Pvaah~iaRAAy~~ 101 (118)
T PRK12672 37 GATKCTTFGTIFAVLAVVTHALYRLRLTGDPKYLQMALHSFVALIALLLTNPVGAHAIARAAHLS 101 (118)
T ss_pred hchhhhHhHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46778999999998887765433211112 1334556788888888889999999999873
No 40
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=35.94 E-value=1.8e+02 Score=23.28 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020892 103 RFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKALW 169 (320)
Q Consensus 103 r~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKylm 169 (320)
+.-|+++.+...++..++.+.+. +.++..+...-+..+++.+..++.++..+|..=..++
T Consensus 15 ~~~Y~l~li~i~l~~~~~~~~~~-------~~~~~~~~~~g~~~~l~~~~~~l~~~i~~Ri~~E~~i 74 (90)
T PF14110_consen 15 KVLYWLGLILIVLSGLSGIFSGF-------MAGMGFSFGGGFLGLLLGPLGFLLGIILWRIMLEFLI 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888777766555554444 3333333333355566677778888888887655444
No 41
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=33.86 E-value=3.7e+02 Score=28.35 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=53.8
Q ss_pred HHHHHHHhhhccchhhhhhhcCCCCCCCCCCCCCCCCcchHHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhh
Q 020892 162 RWAHKALWHASLWHMHEKVIFGISLQSHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGM 241 (320)
Q Consensus 162 ~~aHKylmHG~lW~~H~~~~f~~~h~sHH~p~~g~FE~NDlFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGi 241 (320)
|+.=--.+=|.+|-=++ |-+|++ |+..+-.+-+++-+..+.|+.+.+...- +.- .++|++|++-|+
T Consensus 368 ~l~~~l~~~gll~lR~k-------~p~~~r----PiKvpl~~p~~~~~~~i~lvvip~~~~~--~~~-~~ig~~i~l~G~ 433 (479)
T KOG1287|consen 368 WLFRGLSMAGLLWLRWK-------HPPLPR----PIKVPLFIPILFLLICIFLVVIPIISDF--PVE-TLIGIGIILSGV 433 (479)
T ss_pred HHHHHHHHHHHHHHHhh-------CCCCCC----CEeeeeehHHHHHHHHHHHhheeeeecC--Ccc-chhHHHHHHHhh
Confidence 33333456677884344 114444 5668888888888888899988875431 111 458899999998
Q ss_pred HhhhhhceeecCcccCCcCCCcHHHHHH
Q 020892 242 AYMFVHDGLVHKRFPVGPIADVPYFRRV 269 (320)
Q Consensus 242 aYffvHDglVH~Rfp~g~~~~~pYlrri 269 (320)
.+.+ .++|.+-| ..+++++
T Consensus 434 ~~Y~---~~i~~~~~------p~~~~~~ 452 (479)
T KOG1287|consen 434 PFYF---LFIHWKKK------PKWLRKI 452 (479)
T ss_pred hhhe---EEEEecCC------cHHHHHh
Confidence 8544 46774432 3566666
No 42
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=32.53 E-value=2.7e+02 Score=22.54 Aligned_cols=50 Identities=26% Similarity=0.454 Sum_probs=32.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 106 YLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (320)
Q Consensus 106 Y~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~ 163 (320)
+...|...|-+|..+... .|..= .-++.|.+-+++|=+|+++.|-+..||
T Consensus 23 f~y~a~~aSa~iG~~i~~---~rl~a-----~~~l~~~l~nlaI~igava~~~~L~~~ 72 (75)
T PF11998_consen 23 FFYGAFGASAGIGLFIFL---FRLIA-----GPDLNEALPNLAIQIGAVALFAFLFRW 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHc-----CccHHHHhhhHhHHHHHHHHHHHHHHH
Confidence 455566666444433222 22211 456778999999999999999888775
No 43
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=32.06 E-value=32 Score=28.38 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=31.7
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCC-CcHHHH-----HHHHHHHHHHHH
Q 020892 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGE-VPLAEM-----FGTFALSVGAAV 155 (320)
Q Consensus 105 tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~-~p~~eM-----~~~~~l~vga~v 155 (320)
-=+++.+|-.+-++.++-.+||| +.+|+ .|+.+. +..|.+.+++++
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyY-----i~~~~i~pi~~lG~WN~~IGfg~~~~Gf~ 81 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYY-----ISGGQIPPIPDLGNWNLAIGFGLMIVGFL 81 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhh-----cccCCCCCcccccchHHHHHHHHHHHHHH
Confidence 34678888888888899999988 44555 666666 455555555554
No 44
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=31.22 E-value=2.7e+02 Score=30.04 Aligned_cols=50 Identities=30% Similarity=0.392 Sum_probs=39.6
Q ss_pred hhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHH
Q 020892 99 KRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFAL 149 (320)
Q Consensus 99 ~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l 149 (320)
|+-=|.-++=+++++.+--.|+|+.|||.-|...-+ |++.+..++.-++|
T Consensus 217 M~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~-G~ltl~~~l~~LiL 266 (559)
T COG4988 217 MSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGE-GDLTLFAGLFVLIL 266 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCccHHHHHHHHHH
Confidence 334577889999999999999999999999988655 77777776644444
No 45
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=30.99 E-value=1.4e+02 Score=26.95 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred hhHhhhhhceeecCcccCCcCCC------------cHHHHHHHHHHHhhcCC
Q 020892 240 GMAYMFVHDGLVHKRFPVGPIAD------------VPYFRRVAAAHQLHHSD 279 (320)
Q Consensus 240 GiaYffvHDglVH~Rfp~g~~~~------------~pYlrri~~AH~lHH~~ 279 (320)
-.++.+.||. .|..+--.+.-| .|| ...+..|..||..
T Consensus 36 ~~~~~~~Hda-~H~~~~~~~~~N~~~g~~~~~~~~~~~-~~w~~~H~~HH~~ 85 (207)
T cd03514 36 HLAGTVIHDA-SHKAASRNRWINELIGHVSAFFLGFPF-PVFRRVHMQHHAH 85 (207)
T ss_pred HHHHHHHHHc-ccccccCCccHHHHHHHHHHHHHhCCH-HHHHHHHHHHhcC
Confidence 3466778999 555542221111 111 4577899999964
No 46
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.23 E-value=1.6e+02 Score=25.77 Aligned_cols=60 Identities=8% Similarity=-0.066 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhh---hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 108 VAAVMSSFGITSMAVMAVYYRFWWQ---MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 108 ~aa~~ss~g~~~~a~~avy~rf~w~---~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKy 167 (320)
-+...+++|+..+.++++.|-+..+ .....+-...++..+.+++.+-++.-.+++.++|-
T Consensus 41 AaTKa~TlG~~liLlg~~l~~~~~~~~~~~~~~~~~kllli~~FlllT~Pvaah~iaRAAyr~ 103 (126)
T PRK12592 41 AITKPQTTGLILTVVGAIIRVLGHEDFDQSQRGDLGVLVLLVLFALLTSPVTAQRVGRVSRRE 103 (126)
T ss_pred cchhhhhHHHHHHHHHHHHHHccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3567889999999888777643222 11111223455777888888888999999998763
No 47
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=29.97 E-value=83 Score=26.20 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=30.8
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcH-HHH-----HHHHHHHHHHHH
Q 020892 105 TYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPL-AEM-----FGTFALSVGAAV 155 (320)
Q Consensus 105 tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~-~eM-----~~~~~l~vga~v 155 (320)
-=+++.+|-.+=++.++-.+|||= .+|++|+ .+. +..|++.+.+++
T Consensus 30 p~W~~~~m~glm~~GllWlvvyYl-----~~~~~P~m~~lG~WN~~IGFg~~i~G~l 81 (87)
T PRK00159 30 SVWYVVLMLGLMLIGLAWLVVNYL-----AGPAIPWMADLGPWNYAIGFALMITGLL 81 (87)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhh-----ccCCCCCCcccCchhHHHHHHHHHHHHH
Confidence 346677777777888888888874 5688884 444 455555555544
No 48
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.63 E-value=1.4e+02 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhch---hhhhHHHHHHhhhhhHHHHHH
Q 020892 89 AARVAEKLARKRSER---FTYLVAAVMSSFGITSMAVMA 124 (320)
Q Consensus 89 ~~~~~~~~~r~~ser---~tY~~aa~~ss~g~~~~a~~a 124 (320)
.|+.+.++.+-+..| .....+.+.-.+|++-+.+++
T Consensus 22 DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~ 60 (82)
T PF11239_consen 22 DPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGV 60 (82)
T ss_pred CcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 478888887743333 233455555566655555444
No 49
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=29.22 E-value=1.2e+02 Score=28.40 Aligned_cols=33 Identities=33% Similarity=0.610 Sum_probs=18.8
Q ss_pred HHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHHHHHHHHhhcCC
Q 020892 234 LGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHSD 279 (320)
Q Consensus 234 LGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrri~~AH~lHH~~ 279 (320)
+++.+.=..|.+.|..+++ ++.+. +-|++||+.
T Consensus 101 ~~~~~~D~~~Y~~HR~~H~----------~~~~w---~~H~~HH~~ 133 (271)
T COG3000 101 LAFLFLDLGYYWAHRLLHR----------VPLLW---AFHKVHHSS 133 (271)
T ss_pred HHHHHHHHHHHHHHHHHhh----------hHHHH---HHHHhhcCc
Confidence 3344444445555655443 23333 789999985
No 50
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=29.08 E-value=3.5e+02 Score=26.48 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=13.3
Q ss_pred CCcHHHHHHH-HHHHHHHHHHHHHH
Q 020892 137 EVPLAEMFGT-FALSVGAAVGMEFW 160 (320)
Q Consensus 137 ~~p~~eM~~~-~~l~vga~v~MEf~ 160 (320)
.-|+.|.... +++.+|.......+
T Consensus 86 ~~~~le~~S~~lii~lGl~ll~r~~ 110 (279)
T PRK10019 86 AEPWLQLISAVIIISTAFWMFWRTW 110 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888544 44445555554444
No 51
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.61 E-value=1.8e+02 Score=25.08 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 108 VAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (320)
Q Consensus 108 ~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHK 166 (320)
.+...+++|+..+.+++..|-..++ +.+.+..++..+.+++.+=++--.++|.+++
T Consensus 40 Aatk~~TlG~~lil~g~~l~~~~~~---~~~~~k~ll~~~f~~lT~Pvaah~iaRAa~~ 95 (118)
T PRK12587 40 AAGKASTLGAMSLLFGTFLYFIATQ---GYVNMQLIVGIIFVLITGPLSSHMIMKAAYN 95 (118)
T ss_pred hchhhhHhhHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889998888877765432222 2344556677788888888899999999876
No 52
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=26.44 E-value=2.2e+02 Score=24.34 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHhhhhhhcCCCCcHHHHH
Q 020892 116 GITSMAVMAVYYRFWWQMEGGEVPLAEMF 144 (320)
Q Consensus 116 g~~~~a~~avy~rf~w~~~~g~~p~~eM~ 144 (320)
+|||.++++||..-..+|+ |+--|+
T Consensus 60 ~itSa~IA~vY~a~~~~M~----~~~a~v 84 (105)
T PF10190_consen 60 SITSAAIAGVYRAAGFRMS----TWEAMV 84 (105)
T ss_pred HHHHHHHHHHHHHcCCccc----HHHHHH
Confidence 5899999999988888887 555563
No 53
>PRK12438 hypothetical protein; Provisional
Probab=26.00 E-value=1e+03 Score=27.67 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=75.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHhh-hhhhcCCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhh-hhc
Q 020892 106 YLVAAVMSSFGITSMAVMAVYYRF-WWQMEGGEVPLAEM-FGTFALSVGAAVGMEFWARWAHKALWHASLWHMHEK-VIF 182 (320)
Q Consensus 106 Y~~aa~~ss~g~~~~a~~avy~rf-~w~~~~g~~p~~eM-~~~~~l~vga~v~MEf~A~~aHKylmHG~lW~~H~~-~~f 182 (320)
.++..++..+-++.++++++||=+ .....++..-++.- -..+++.++.++..-.++||.=||-+ |+.=|.. ..+
T Consensus 170 ~l~~~l~~~~~~~~i~~~~~~yl~g~irl~~~~~~~s~~ar~hL~vl~~~~~ll~A~~ywLdRy~L---L~s~~g~~~~~ 246 (991)
T PRK12438 170 SVLNWLFVAVVLAFLASLLTHYLFGGLRLTTGRGMLTQAARVQLAVFAGAFVLLKAVAYWLDRYEL---LSSGRKEPTFT 246 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---eecCCCCceEe
Confidence 345555555555666677777655 24443211223333 45666777777778888999998854 3333332 234
Q ss_pred CCCCCCCCC--CCCCCCCcchHHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhH-----hhhHhhhhhceeecCcc
Q 020892 183 GISLQSHHR--PREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITV-----FGMAYMFVHDGLVHKRF 255 (320)
Q Consensus 183 ~~~h~sHH~--p~~g~FE~NDlFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~-----YGiaYffvHDglVH~Rf 255 (320)
+-+--|-|- | .--+.+++..+.|++++ ++++..++. .-++|+|+.+ -|-+|- .+=|||
T Consensus 247 GAgYTDv~a~LP------a~~iL~~ia~i~Av~f~-~~i~~r~~r---lp~i~~~llv~~~iv~g~i~P-----~~vQ~f 311 (991)
T PRK12438 247 GAGYTDINAVLP------AKLILVAIAVLCAVAFF-AAIFLRDLR---IPAMAAALLVLSAILVGGLWP-----LLMEQF 311 (991)
T ss_pred cCChhhhhhHHH------HHHHHHHHHHHHHHHHH-HHHHHhcch---hHHHHHHHHHHHHHHHHHHHH-----HhheeE
Confidence 444444442 2 11223333333333333 343333221 1112333321 122221 145899
Q ss_pred cCCcCC---CcHHHHHHHHHHH
Q 020892 256 PVGPIA---DVPYFRRVAAAHQ 274 (320)
Q Consensus 256 p~g~~~---~~pYlrri~~AH~ 274 (320)
.+.|+. ..||.+|=+.|=+
T Consensus 312 ~V~PNe~~~E~pYI~rNI~aTR 333 (991)
T PRK12438 312 SVRPNAADVESPYIERNIEATR 333 (991)
T ss_pred EECcchhhhhhHHHHHHHHHHH
Confidence 998875 4679977666543
No 54
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=25.74 E-value=1.3e+02 Score=30.88 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.2
Q ss_pred hhHHHHhHHHhHhhhHhhhhhceeecC
Q 020892 227 GLCFGAGLGITVFGMAYMFVHDGLVHK 253 (320)
Q Consensus 227 g~~fg~GLGIT~YGiaYffvHDglVH~ 253 (320)
.+..++-+|+....+. ++.||.-++.
T Consensus 161 ~~l~aillg~~~~~~g-~l~HDa~H~~ 186 (485)
T PLN03199 161 HIASALLLGLFFQQCG-WLAHDFLHHQ 186 (485)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhh
Confidence 3445677788877777 5999995443
No 55
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.61 E-value=73 Score=26.64 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=22.8
Q ss_pred HHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhhHhhhhh
Q 020892 204 AIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVH 247 (320)
Q Consensus 204 aiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGiaYffvH 247 (320)
++++.+|.++++..-+....+.....+.+..|+...++.|.+++
T Consensus 72 ~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~ 115 (135)
T PF04246_consen 72 FLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILR 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888998887744322111111123334555555555555554
No 56
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=25.06 E-value=1.3e+02 Score=29.52 Aligned_cols=49 Identities=16% Similarity=0.042 Sum_probs=28.3
Q ss_pred HHHhHHHhHhhhHhhhhhceeecCcccCCcCCCc-----------HHHHHHHHHHHhhcCC
Q 020892 230 FGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADV-----------PYFRRVAAAHQLHHSD 279 (320)
Q Consensus 230 fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~-----------pYlrri~~AH~lHH~~ 279 (320)
+...++.++..-.....||. .|+=|.-.+.-|. .-....+..|--||++
T Consensus 66 l~~~~~~~~l~~~~~v~Hd~-~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~ 125 (343)
T COG3239 66 LALLLAGLLLTGLFSVGHDC-GHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAH 125 (343)
T ss_pred HHHHHHHHHHHHHHhhhhhc-cccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcc
Confidence 33455566566678889999 8874421110000 1134556779999974
No 57
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=24.81 E-value=1.9e+02 Score=22.37 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=19.8
Q ss_pred HHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhhHhh
Q 020892 202 VFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYM 244 (320)
Q Consensus 202 lFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGiaYf 244 (320)
+.+++..+|.++.+ .|. ....+++.++|++++-++|=
T Consensus 15 ~~~l~~~~P~~a~~-~~~-----~~~~a~~l~v~~s~~a~~wn 51 (67)
T PF05232_consen 15 VGALLISVPLIAWW-LGI-----SLWQAGALDVGLSLFAMVWN 51 (67)
T ss_pred HHHHHHHHHHHHHH-HCC-----CHHHHHHHHHHHHHHHHHHH
Confidence 45677777777765 332 11234445555555544443
No 58
>PLN02498 omega-3 fatty acid desaturase
Probab=24.63 E-value=1.8e+02 Score=30.41 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCcch----HHHHhhHHHHHHHHHhhhccCCCchhhHHHHhHHHhHhhhHhhhhhceeecCcccCCcCCCcHHHHHHHHH
Q 020892 197 FELND----VFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAA 272 (320)
Q Consensus 197 FE~ND----lFaiifAvpAIaLi~~G~~~~g~~~g~~fg~GLGIT~YGiaYffvHDglVH~Rfp~g~~~~~pYlrri~~A 272 (320)
||+|+ .+.+...+..++++........++.....++-.|...-|+ +.+.||. -|+.| ...+.-|.-+-.+...
T Consensus 116 F~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~wpl~w~~~G~~~~gL-~vl~HDc-gHgsf-~~~k~lNd~vG~ll~~ 192 (450)
T PLN02498 116 WVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVVWPLYWFAQGTMFWAL-FVLGHDC-GHGSF-SNNPKLNSVVGHLLHS 192 (450)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhc-ccccc-ccChHHHHHHHHHHHH
Q ss_pred ------------HHhhcCCCCCCcceeEeeecchhhhcCChHHHHHHHHHHh
Q 020892 273 ------------HQLHHSDKFHGVPYGLFLGPKELEEVGGLEELEKEISKRI 312 (320)
Q Consensus 273 ------------H~lHH~~Ke~Gv~FG~ll~P~eye~vgg~eeL~~~~~~~~ 312 (320)
|..||...++- .-..-++|..-|+...+.+..+-+....
T Consensus 193 ~ll~py~~Wr~sH~~HH~~Tn~~-e~D~~~~P~t~~~y~~l~~~~~~~~~~~ 243 (450)
T PLN02498 193 SILVPYHGWRISHRTHHQNHGHV-ENDESWHPLSEKIYKSLDKVTRTLRFTL 243 (450)
T ss_pred HhcCCHHHHHHHHHHHhcCCCCC-CCCCCCCcchHHHHHhccccchHHHHHH
No 59
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=23.87 E-value=3.4e+02 Score=24.13 Aligned_cols=19 Identities=26% Similarity=0.667 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020892 149 LSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 149 l~vga~v~MEf~A~~aHKy 167 (320)
+-++|.+.|..|++...|-
T Consensus 3 iGigAT~vMDlw~~l~~~~ 21 (150)
T PF11158_consen 3 IGIGATLVMDLWALLLKRL 21 (150)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 4577888899999888775
No 60
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=23.80 E-value=4.3e+02 Score=23.13 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 135 GGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (320)
Q Consensus 135 ~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHK 166 (320)
.|++++..+...+.+..++++|+-.-.|+.+|
T Consensus 188 ~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~ 219 (240)
T PF01925_consen 188 LGDVDWPMLLLSLILLPGAFLGAFLGAKLARK 219 (240)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888887777777888888888877776654
No 61
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.42 E-value=3.2e+02 Score=23.09 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=37.1
Q ss_pred HHHHHHhhhhhHHHHHHHHH-hhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 108 VAAVMSSFGITSMAVMAVYY-RFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHK 166 (320)
Q Consensus 108 ~aa~~ss~g~~~~a~~avy~-rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHK 166 (320)
-+...+++|+..+.+++..+ .+++. +-....+..+.+++.+=++.-.+++.+++
T Consensus 33 Aatk~~TlG~~lil~g~~l~~~~~~~-----~~~k~lli~~f~~lt~Pvaah~iaraay~ 87 (104)
T PRK12675 33 AATKCDTGGAMGIILALALASDASLL-----IKLKFLVLAFLIAMINPMVSHAIARGAYK 87 (104)
T ss_pred hchhhhhhhHHHHHHHHHHHhcchhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999988886554 22332 22344566667777778888888888865
No 62
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=22.78 E-value=2.5e+02 Score=22.15 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHhhhhh-hc--CCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 020892 115 FGITSMAVMAVYYRFWWQ-ME--GGEVPLAEM-FGTFALSVGAAVGMEFWARWAH 165 (320)
Q Consensus 115 ~g~~~~a~~avy~rf~w~-~~--~g~~p~~eM-~~~~~l~vga~v~MEf~A~~aH 165 (320)
+|||++..+.|++-..-+ |. .-.+|+.-. ++.+.+++++.+.+-.+-+..|
T Consensus 29 l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~~ 83 (237)
T PF02932_consen 29 LGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVYNIH 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhhhhc
Confidence 566666665555433322 22 122444433 2333444445555555655554
No 63
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=22.46 E-value=1.3e+02 Score=28.87 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHhhHHHHHHHHHhhhccCCCc-----hhhHHHHhHHHhHhhhHhhhhh
Q 020892 203 FAIINAVPAIALLSFGFFHKGLV-----PGLCFGAGLGITVFGMAYMFVH 247 (320)
Q Consensus 203 FaiifAvpAIaLi~~G~~~~g~~-----~g~~fg~GLGIT~YGiaYffvH 247 (320)
.+++|+.|++.-=+||..-.+++ .|.++..++.+.+-++.|.++.
T Consensus 268 ~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~fr 317 (322)
T COG0598 268 VSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFR 317 (322)
T ss_pred HHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777776433321 2445556777777777777663
No 64
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=21.62 E-value=4.6e+02 Score=21.57 Aligned_cols=48 Identities=10% Similarity=0.341 Sum_probs=24.9
Q ss_pred chhhhhHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHH
Q 020892 102 ERFTYLVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALS 150 (320)
Q Consensus 102 er~tY~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~ 150 (320)
.+.......+...+..++.++...+--+. ++..|+....+++..+.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~g~~s~g~~~~~~~~~ 268 (275)
T PF00664_consen 221 AKIQALLSSISQFISYLSIVLILIFGAYL-SVINGQISIGTLVAFLSLS 268 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcCHHHHHHHHHHH
Confidence 33444445555554444443333332222 3678999988886555443
No 65
>TIGR00893 2A0114 d-galactonate transporter.
Probab=21.45 E-value=5e+02 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 144 FGTFALSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 144 ~~~~~l~vga~v~MEf~A~~aHKy 167 (320)
+......+++++++-+..++..|.
T Consensus 255 ~~~~~~~~~~~~~~~~~g~~~~~~ 278 (399)
T TIGR00893 255 FMASLPGIVGFIGMILGGRLSDLL 278 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777888888887764
No 66
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=20.80 E-value=3.8e+02 Score=24.41 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHH
Q 020892 123 MAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVG 156 (320)
Q Consensus 123 ~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~ 156 (320)
..+++|.--+++.|++|-.||+-...+++++++.
T Consensus 52 ~~~l~~~q~~~~~G~~P~~~ll~g~~~~vagiLL 85 (158)
T COG3030 52 FGTLLRAQAALASGEVPGAELLDGLLLIIAGILL 85 (158)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHhHHHHHHHHHH
Confidence 4566777777878899999997777777666553
No 67
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=20.35 E-value=2.2e+02 Score=28.72 Aligned_cols=37 Identities=27% Similarity=0.402 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhhccchhhhhhhcCCCCCCCCC
Q 020892 143 MFGTFALSVGAAVGMEFW----ARWAHKALWHASLWHMHEKVIFGISLQSHHR 191 (320)
Q Consensus 143 M~~~~~l~vga~v~MEf~----A~~aHKylmHG~lW~~H~~~~f~~~h~sHH~ 191 (320)
.+.+..+.+++.+..|.+ -+.+|.|= +|-++|. =||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~d~~h~~~h~~~---~l~~~h~---------~hh~ 45 (406)
T PRK07424 5 WLQAAGLILGSILWVEIVRDSYHALAHQWN---PLYRLHN---------WHHR 45 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch---HHHHHHH---------hHHh
Confidence 355667778888888888 67777765 4558999 8996
No 68
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.08 E-value=3.6e+02 Score=23.84 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHHHhhhh-hHHHHHHHHHhhhhhhcCCC-CcHHHH--HHHHHHHHHHHHH
Q 020892 109 AAVMSSFGI-TSMAVMAVYYRFWWQMEGGE-VPLAEM--FGTFALSVGAAVG 156 (320)
Q Consensus 109 aa~~ss~g~-~~~a~~avy~rf~w~~~~g~-~p~~eM--~~~~~l~vga~v~ 156 (320)
++..-.+|+ ++++...=|+|--|||++|+ .|.... ...++++|++.+.
T Consensus 60 g~fii~~gil~~a~g~~r~~~~~~amrr~~~~p~~~i~~~~av~lvVv~~~~ 111 (120)
T COG2149 60 GVFLILVGILLAALGALRWQRVERAMRRGFYLPYLNIWLYLAVGLVVVGVIV 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHHHHHHHH
Confidence 333333443 44455566889999998654 665555 2334444444443
Done!