Query 020892
Match_columns 320
No_of_seqs 140 out of 212
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 75.6 1.9 6.5E-05 39.2 3.5 74 91-166 59-139 (306)
2 3h90_A Ferrous-iron efflux pum 66.5 3.6 0.00012 36.5 3.1 75 91-167 50-131 (283)
3 3llq_A Aquaporin Z 2; aquapori 34.1 50 0.0017 30.1 5.1 16 232-247 69-84 (256)
4 3rhw_A Avermectin-sensitive gl 26.8 1.5E+02 0.0052 26.8 7.0 46 114-159 247-294 (347)
5 2ki0_A DS119; beta-alpha-beta, 20.8 61 0.0021 21.9 2.3 17 298-314 10-27 (36)
6 3tlw_A GLR4197 protein, GLIC; 20.5 2.2E+02 0.0076 25.4 6.7 46 114-159 230-277 (321)
7 3rqw_A ELIC pentameric ligand 15.1 3.5E+02 0.012 24.1 6.6 47 114-160 233-281 (322)
8 2lkg_A Acetylcholine receptor; 14.0 2.8E+02 0.0095 23.0 5.3 37 115-151 83-122 (140)
9 1mfq_C SRP54, signal recogniti 12.8 59 0.002 27.3 0.8 20 190-209 8-27 (129)
10 1vry_A Glycine receptor alpha- 11.7 4.3E+02 0.015 20.1 5.4 52 114-167 6-58 (76)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=75.62 E-value=1.9 Score=39.19 Aligned_cols=74 Identities=20% Similarity=0.096 Sum_probs=42.4
Q ss_pred HHHHHHHhhhh-chhhh------hHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 91 RVAEKLARKRS-ERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (320)
Q Consensus 91 ~~~~~~~r~~s-er~tY------~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~ 163 (320)
-++-|+++|++ ++.+| .++++..++.+..+++..+|-....-+++.++.-..+ .+.+.+++++.++.+.++
T Consensus 59 l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~--~~~v~~~~~~~~~~~~~~ 136 (306)
T 3j1z_P 59 FIAIRYAIVPADHDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATL--GVVVSVVAIVLTLALVLL 136 (306)
T ss_dssp HHHHHHHTSCCCCTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCGGGTTC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCcccccc--chhhhhhHhhhhHHHHHH
Confidence 45667777664 33333 3455666666777777777766655555554433332 234445566666666666
Q ss_pred HHH
Q 020892 164 AHK 166 (320)
Q Consensus 164 aHK 166 (320)
.++
T Consensus 137 ~~~ 139 (306)
T 3j1z_P 137 QKR 139 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=66.47 E-value=3.6 Score=36.55 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=42.7
Q ss_pred HHHHHHHhhhh-chhhh------hHHHHHHhhhhhHHHHHHHHHhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 91 RVAEKLARKRS-ERFTY------LVAAVMSSFGITSMAVMAVYYRFWWQMEGGEVPLAEMFGTFALSVGAAVGMEFWARW 163 (320)
Q Consensus 91 ~~~~~~~r~~s-er~tY------~~aa~~ss~g~~~~a~~avy~rf~w~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~ 163 (320)
-++-|+++|+. +|.+| .+++...++.+..+++..+|-.+..-+++.+++...+ .+.+.+.+++..++.+|+
T Consensus 50 l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~i~~eai~~l~~~~~~~~~~~--~l~v~~~s~~v~~~~~~~ 127 (283)
T 3h90_A 50 LLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGV--GVIVTIVALICTIILVSF 127 (283)
T ss_dssp HHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCCCCCC--CTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcchH--HHHHHHHHHHHHHHHHHH
Confidence 45667777763 44443 3555666666666666666655444445544433221 233445566677778887
Q ss_pred HHHH
Q 020892 164 AHKA 167 (320)
Q Consensus 164 aHKy 167 (320)
.+|.
T Consensus 128 ~~~~ 131 (283)
T 3h90_A 128 QRWV 131 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=34.06 E-value=50 Score=30.06 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=9.3
Q ss_pred HhHHHhHhhhHhhhhh
Q 020892 232 AGLGITVFGMAYMFVH 247 (320)
Q Consensus 232 ~GLGIT~YGiaYffvH 247 (320)
++.|+++.-++|.+-|
T Consensus 69 la~Glav~~~i~~~g~ 84 (256)
T 3llq_A 69 LAFGLTVLTMAYAVGG 84 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHheeec
Confidence 4455555556777655
No 4
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=26.85 E-value=1.5e+02 Score=26.83 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=28.1
Q ss_pred hhhhhHHHHHHHHHhhh-hhhc-CCCCcHHHHHHHHHHHHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYRFW-WQME-GGEVPLAEMFGTFALSVGAAVGMEF 159 (320)
Q Consensus 114 s~g~~~~a~~avy~rf~-w~~~-~g~~p~~eM~~~~~l~vga~v~MEf 159 (320)
++|||.+..+.|+.-.. -.+. -+.+|+-+.+..+.+++..+..+|+
T Consensus 247 ~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~ 294 (347)
T 3rhw_A 247 TLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEF 294 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHH
Confidence 37888888887776544 3454 4679999985444444434444443
No 5
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=20.76 E-value=61 Score=21.94 Aligned_cols=17 Identities=47% Similarity=0.550 Sum_probs=11.0
Q ss_pred cCC-hHHHHHHHHHHhhh
Q 020892 298 VGG-LEELEKEISKRIKS 314 (320)
Q Consensus 298 vgg-~eeL~~~~~~~~~~ 314 (320)
||| +|||||..+.-.|.
T Consensus 10 vggtpeelkklkeeakka 27 (36)
T 2ki0_A 10 VGGTPEELKKLKEEAKKA 27 (36)
T ss_dssp BCCCHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHhc
Confidence 555 88888866554443
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=20.55 E-value=2.2e+02 Score=25.37 Aligned_cols=46 Identities=2% Similarity=-0.078 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHhhh-hhhc-CCCCcHHHHHHHHHHHHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYRFW-WQME-GGEVPLAEMFGTFALSVGAAVGMEF 159 (320)
Q Consensus 114 s~g~~~~a~~avy~rf~-w~~~-~g~~p~~eM~~~~~l~vga~v~MEf 159 (320)
++|||.+..+.+++-.. ..+. -+.+|.-+.+..+.+++..+..+|.
T Consensus 230 ~l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~ 277 (321)
T 3tlw_A 230 TLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEV 277 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36788877777765543 3453 3669998885544444444444443
No 7
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=15.10 E-value=3.5e+02 Score=24.10 Aligned_cols=47 Identities=9% Similarity=-0.109 Sum_probs=30.5
Q ss_pred hhhhhHHHHHHHHHhh-hhhhc-CCCCcHHHHHHHHHHHHHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYRF-WWQME-GGEVPLAEMFGTFALSVGAAVGMEFW 160 (320)
Q Consensus 114 s~g~~~~a~~avy~rf-~w~~~-~g~~p~~eM~~~~~l~vga~v~MEf~ 160 (320)
++|||.+..+.++.-. ...+. -+.+|+-+.+..+.+++..+..+|.+
T Consensus 233 ~l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~ 281 (322)
T 3rqw_A 233 QTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLII 281 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888777776544 45564 36799999866555555555555554
No 8
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=14.02 E-value=2.8e+02 Score=22.96 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHhh-hhhhcC-C-CCcHHHHHHHHHHHH
Q 020892 115 FGITSMAVMAVYYRF-WWQMEG-G-EVPLAEMFGTFALSV 151 (320)
Q Consensus 115 ~g~~~~a~~avy~rf-~w~~~~-g-~~p~~eM~~~~~l~v 151 (320)
+|||.+....+++-. ++++.. + .+|+-+.+..+.+++
T Consensus 83 lgit~lLs~tvfl~~v~~~lP~tS~~vPlI~~y~~~~~~~ 122 (140)
T 2lkg_A 83 ESKSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEF 122 (140)
T ss_dssp HHHHHHHHHHHHHHGGGGTCTTTGGGHHHHHHHHHHHHHH
T ss_pred EeeehHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Confidence 688888887777755 466642 3 688888854444443
No 9
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=12.82 E-value=59 Score=27.29 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=13.1
Q ss_pred CCCCCCCCCcchHHHHhhHH
Q 020892 190 HRPREGPFELNDVFAIINAV 209 (320)
Q Consensus 190 H~p~~g~FE~NDlFaiifAv 209 (320)
|+...|-|.+||+.-=+-.+
T Consensus 8 ~~~~~g~Ftl~Df~~Ql~qi 27 (129)
T 1mfq_C 8 HHHKHGQFTLRDMYEQFQNI 27 (129)
T ss_dssp ---CCSSCCHHHHHHHHHHT
T ss_pred cccccCCcCHHHHHHHHHHH
Confidence 33446799999999766553
No 10
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=11.74 E-value=4.3e+02 Score=20.12 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHHHHhhhh-hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYRFWW-QMEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 114 s~g~~~~a~~avy~rf~w-~~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKy 167 (320)
++|||++..+.....=.. .+ -.|++.-.+=...++-..|++.-.++|.+=-|
T Consensus 6 ~LGittvLtmtt~~~~~~~~l--PkVSYikAiDvw~~~C~~FVF~aLlEya~V~y 58 (76)
T 1vry_A 6 GLGITTVLTLTTQSSGSRASL--PKVSYVKAIDIWLAVCLLFVFSALLEYAAVNF 58 (76)
T ss_dssp HHHHHHHHHHHHHHHCTTTCC--CSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EechHHHHHHHHHhcCcccCC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999888876542221 12 23444333333333333444444455544333
Done!