Query 020892
Match_columns 320
No_of_seqs 140 out of 212
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 09:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 27.0 1.4E+02 0.01 23.4 8.5 31 136-166 280-311 (447)
2 d1oedc_ f.36.1.1 (C:) Acetylch 24.4 40 0.0029 26.5 4.6 35 114-148 34-71 (260)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 21.9 64 0.0047 28.4 5.9 56 112-167 413-469 (472)
4 d1oeda_ f.36.1.1 (A:) Acetylch 19.6 58 0.0042 25.5 4.6 35 114-148 34-71 (227)
5 d2bnma1 a.35.1.3 (A:6-76) Hydr 15.4 1.1E+02 0.0078 21.5 4.6 55 91-153 5-60 (71)
6 d1oede_ f.36.1.1 (E:) Acetylch 14.5 65 0.0048 25.4 3.7 38 114-151 35-75 (260)
7 d1oedb_ f.36.1.1 (B:) Acetylch 14.4 59 0.0043 25.6 3.4 30 115-144 35-67 (250)
8 d1pv7a_ f.38.1.2 (A:) Lactose 13.6 1.8E+02 0.013 21.8 5.9 17 150-166 269-285 (417)
9 d1ej5a_ a.68.1.1 (A:) Wiscott- 8.6 66 0.0048 24.5 1.7 21 295-315 53-73 (107)
10 d1y5ic1 f.21.3.1 (C:1-225) Res 8.5 2.4E+02 0.017 22.3 5.3 36 89-124 110-145 (225)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=26.96 E-value=1.4e+02 Score=23.44 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=16.3
Q ss_pred CCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 020892 136 GEVPLAEM-FGTFALSVGAAVGMEFWARWAHK 166 (320)
Q Consensus 136 g~~p~~eM-~~~~~l~vga~v~MEf~A~~aHK 166 (320)
...+..+. ....+..++++++.-...|+.-|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (447)
T d1pw4a_ 280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311 (447)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcchhhhhhhhhhhhhhhhh
Confidence 44455555 34444445556666666555544
No 2
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=24.43 E-value=40 Score=26.53 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHhhhhhh-c--CCCCcHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYRFWWQM-E--GGEVPLAEMFGTFA 148 (320)
Q Consensus 114 s~g~~~~a~~avy~rf~w~~-~--~g~~p~~eM~~~~~ 148 (320)
++|||.+..+.||.-..-+. . +..+|+.+.+..+.
T Consensus 34 ~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~ 71 (260)
T d1oedc_ 34 STAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFI 71 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 35667777777776655553 3 34788888843333
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.86 E-value=64 Score=28.36 Aligned_cols=56 Identities=13% Similarity=-0.051 Sum_probs=39.3
Q ss_pred HHhhhhhHHHHHHHHHhhhhh-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020892 112 MSSFGITSMAVMAVYYRFWWQ-MEGGEVPLAEMFGTFALSVGAAVGMEFWARWAHKA 167 (320)
Q Consensus 112 ~ss~g~~~~a~~avy~rf~w~-~~~g~~p~~eM~~~~~l~vga~v~MEf~A~~aHKy 167 (320)
.+.++.+.+.+.++|.-+.=. +.--.+|+.+-+..+++.+..++..|.+-|+.-||
T Consensus 413 ~av~i~~~l~~~i~yiP~l~~vf~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~ 469 (472)
T d1wpga4 413 GSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNY 469 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTTHHHHTCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334444556777788764321 23357888888888888999999999998777665
No 4
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=19.64 E-value=58 Score=25.50 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHHh-hhhhhc--CCCCcHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYR-FWWQME--GGEVPLAEMFGTFA 148 (320)
Q Consensus 114 s~g~~~~a~~avy~r-f~w~~~--~g~~p~~eM~~~~~ 148 (320)
++|||.+..+.|+.- .+++|. +..+|+-+.+....
T Consensus 34 ~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~ 71 (227)
T d1oeda_ 34 TLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFT 71 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHH
Confidence 367777766666654 455564 34688888843333
No 5
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=15.41 E-value=1.1e+02 Score=21.52 Aligned_cols=55 Identities=36% Similarity=0.531 Sum_probs=36.7
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHhhhhhHHHHHHHHHhhhhhh-cCCCCcHHHHHHHHHHHHHH
Q 020892 91 RVAEKLARKRSERFTYLVAAVMSSFGITSMAVMAVYYRFWWQM-EGGEVPLAEMFGTFALSVGA 153 (320)
Q Consensus 91 ~~~~~~~r~~ser~tY~~aa~~ss~g~~~~a~~avy~rf~w~~-~~g~~p~~eM~~~~~l~vga 153 (320)
-.+|++..+ .|+-..--||++|.+|-|--.++| |.- ||||..++.. +-++=++|+
T Consensus 5 gfae~lk~r-reqvkmdhaalas~lgetpetvaa------wengeggeltltql-g~ia~~lgt 60 (71)
T d2bnma1 5 GFAELLKDR-REQVKMDHAALASLLGETPETVAA------WENGEGGELTLTQL-GRIAHVLGT 60 (71)
T ss_dssp HHHHHHHHH-HHHTTCCHHHHHHHHTCCHHHHHH------HHTTTCTTCBHHHH-HHHHHHTTS
T ss_pred hHHHHHHHH-HHHHhhhHHHHHHHHcCCchHHHH------hhcCCCceeeHHHH-HHHHHHHcc
Confidence 445555433 355566679999999998877764 775 7899998875 334444443
No 6
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=14.49 E-value=65 Score=25.42 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=23.2
Q ss_pred hhhhhHHHHHHHHHhhhhh-hc--CCCCcHHHHHHHHHHHH
Q 020892 114 SFGITSMAVMAVYYRFWWQ-ME--GGEVPLAEMFGTFALSV 151 (320)
Q Consensus 114 s~g~~~~a~~avy~rf~w~-~~--~g~~p~~eM~~~~~l~v 151 (320)
++|||.+..+.|+.=..-+ |. ...+|+.+.+..+.+++
T Consensus 35 ~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~ 75 (260)
T d1oede_ 35 TLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFV 75 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHH
T ss_pred EeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Confidence 3788888888887766544 32 34677777644333333
No 7
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=14.45 E-value=59 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHhhhhh-hc--CCCCcHHHHH
Q 020892 115 FGITSMAVMAVYYRFWWQ-ME--GGEVPLAEMF 144 (320)
Q Consensus 115 ~g~~~~a~~avy~rf~w~-~~--~g~~p~~eM~ 144 (320)
+|||.+..+.||.=..-+ |. +..+|+-+.+
T Consensus 35 l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~ 67 (250)
T d1oedb_ 35 LSISALLAVTVFLLLLADKVPETSLSVPIIIRY 67 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTT
T ss_pred eeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHH
Confidence 667777777776655444 32 3467877773
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.59 E-value=1.8e+02 Score=21.75 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020892 150 SVGAAVGMEFWARWAHK 166 (320)
Q Consensus 150 ~vga~v~MEf~A~~aHK 166 (320)
.++..++.-...++..|
T Consensus 269 ~~~~~~~~~~~~~l~~r 285 (417)
T d1pv7a_ 269 ELLNASIMFFAPLIINR 285 (417)
T ss_dssp HHHHHHHHTTHHHHHHH
T ss_pred ccccccchhhhhhhhcc
Confidence 34444555555555544
No 9
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=66 Score=24.50 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=16.0
Q ss_pred hhhcCChHHHHHHHHHHhhhc
Q 020892 295 LEEVGGLEELEKEISKRIKSY 315 (320)
Q Consensus 295 ye~vgg~eeL~~~~~~~~~~~ 315 (320)
|++-||+|..++|+++...+.
T Consensus 53 iek~gG~e~v~~e~~~~g~~~ 73 (107)
T d1ej5a_ 53 IEDQGGLEAVRQEMRRQGGSG 73 (107)
T ss_dssp HHHTTHHHHHHHHHHHTTTSS
T ss_pred HHHcCChHHHHHHHHHHcccc
Confidence 466799999999998755443
No 10
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=8.49 E-value=2.4e+02 Score=22.25 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHhhhhhHHHHHH
Q 020892 89 AARVAEKLARKRSERFTYLVAAVMSSFGITSMAVMA 124 (320)
Q Consensus 89 ~~~~~~~~~r~~ser~tY~~aa~~ss~g~~~~a~~a 124 (320)
-+|..++..|..+.+..|.+-.+.-.+++|.++.-+
T Consensus 110 ~RR~~~~~~r~~~~~~d~~~L~ll~~i~~tG~~~~~ 145 (225)
T d1y5ic1 110 KRRLFSPRVRATTTGADILILSLLVIQCALGLLTIP 145 (225)
T ss_dssp HHHHHSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666777777766666665555554333
Done!