Query 020897
Match_columns 320
No_of_seqs 74 out of 76
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14736 N_Asn_amidohyd: Prote 100.0 3.3E-99 7E-104 710.9 26.6 241 42-318 1-246 (274)
2 PRK13498 chemoreceptor glutami 96.4 0.018 3.8E-07 51.8 8.7 138 60-224 6-157 (167)
3 PRK13490 chemoreceptor glutami 96.4 0.018 4E-07 51.4 8.6 136 62-225 4-155 (162)
4 PRK13493 chemoreceptor glutami 96.2 0.052 1.1E-06 50.7 10.8 132 61-225 28-182 (213)
5 PRK13488 chemoreceptor glutami 96.1 0.034 7.3E-07 49.5 8.7 133 63-225 3-150 (157)
6 PRK13491 chemoreceptor glutami 96.1 0.032 7E-07 51.7 8.8 133 60-225 12-158 (199)
7 PRK13497 chemoreceptor glutami 96.1 0.081 1.7E-06 48.4 11.2 133 60-225 6-155 (184)
8 PRK13495 chemoreceptor glutami 96.0 0.036 7.8E-07 49.5 8.4 130 64-225 4-148 (159)
9 PRK13487 chemoreceptor glutami 96.0 0.29 6.2E-06 45.4 14.5 134 61-225 21-170 (201)
10 PRK13494 chemoreceptor glutami 96.0 0.041 8.9E-07 49.5 8.4 130 61-222 11-154 (163)
11 COG1871 CheD Chemotaxis protei 95.8 0.035 7.7E-07 50.1 7.5 105 60-181 6-127 (164)
12 PRK13489 chemoreceptor glutami 95.7 0.05 1.1E-06 51.6 8.3 135 61-226 18-169 (233)
13 PF03975 CheD: CheD chemotacti 32.3 51 0.0011 27.5 3.2 88 112-223 17-105 (114)
14 PF04308 DUF458: Protein of un 23.8 5.3E+02 0.011 23.0 8.8 64 79-142 20-104 (144)
No 1
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=100.00 E-value=3.3e-99 Score=710.88 Aligned_cols=241 Identities=40% Similarity=0.636 Sum_probs=232.5
Q ss_pred hhccCcceeeccCCCCCCCCceEEEecceeEeeCCC--ceeeeccCCCceeeeEEEeecCCCceEEEeccCcchhhhHHH
Q 020897 42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC 119 (320)
Q Consensus 42 ~l~~~p~~~v~~~~e~~~~~~~LYV~QrE~A~~~P~--~v~ilGSDdATTChivVlR~~~sG~t~laH~Dgs~~v~~~v~ 119 (320)
+|+++|.+.++ |+|+|||+|||||||+|+ +|++||||||||||||||||++|||||||||||+++ +++|+
T Consensus 1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~ 72 (274)
T PF14736_consen 1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA 72 (274)
T ss_pred CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence 58899999998 999999999999999999 699999999999999999999999999999999996 99999
Q ss_pred HHHHhhc---CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCC
Q 020897 120 QMLSLVV---DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNT 196 (320)
Q Consensus 120 ~ml~~l~---~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt 196 (320)
+||+.+. .++.++||||||||||+|+ +|||++|+.+||++||+++++|||+||||+++||
T Consensus 73 ~ml~~v~~~~~~~~~~~lelhLVGGF~D~-----------------~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt 135 (274)
T PF14736_consen 73 QMLSSVQSLSNGYPEGRLELHLVGGFDDD-----------------RGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNT 135 (274)
T ss_pred HHHHHHHhhccCCCCCceEEEEEccccCc-----------------ccchHHHHHHHHHHHHcCcceEEEEEEEEccCCC
Confidence 9999964 4568999999999999999 9999999999999999999999999999999999
Q ss_pred cccCCCCCcceEEEEEEEecCCeeeccccCCCCCCchHHHHHhhhhccccccCCCCeeeeeeeCCCCeEEeccccccccc
Q 020897 197 KRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRWTVRK 276 (320)
Q Consensus 197 ~~~~~g~~~Pii~Gi~VnvkTG~ifPAsF~~~~rGP~~~lR~aR~~~s~~~~~~gg~l~~iYD~~~~~l~I~Pf~w~p~~ 276 (320)
+++ +|++||||||++||+|||+||||+| ++|||+++||+||+++ |+++|+||||+++++|+|+||+|+|++
T Consensus 136 ~~~-~g~~~Pii~Gi~VnvkTG~IfpAsF--~~rGP~~~lR~aR~~~------~~~~l~~iYD~~~~~l~I~Pf~~~p~~ 206 (274)
T PF14736_consen 136 RVE-DGIHRPIIYGIAVNVKTGEIFPASF--PDRGPDEILRSARVFT------GGGRLLNIYDTETDQLRIGPFHWRPFP 206 (274)
T ss_pred ccC-CCccCcEEEEEEEEecCCeEecccC--cccCCcHHHHHHHHhc------CCCceEEEEECCCCeEEECCCcCCCcc
Confidence 888 9999999999999999999999999 9999999999999995 789999999999999999999999997
Q ss_pred hhHHHhhhcCCHHHHHHhcCCCCCCCCCchHHHHHHhhhccc
Q 020897 277 LHIVMSLQQLSDEEILRRCSTSPSAEGPDFVENLRRYGHIKN 318 (320)
Q Consensus 277 ~~v~~~L~~~~D~~iL~~~STSP~aEpPhFv~~iR~~~~~~~ 318 (320)
++++|| +|+|++|||+|||||+|||||||++||++|+|+-
T Consensus 207 -~~~~~l-~~~D~~iL~~lSTSP~aEpp~Fv~~ir~~l~fl~ 246 (274)
T PF14736_consen 207 -HADFWL-SQSDSEILQYLSTSPEAEPPHFVEHIRSTLRFLQ 246 (274)
T ss_pred -ChHHHh-hCCHHHHHHhcCCCcCCCCchHHHHHHHHHHHHH
Confidence 899999 8899999999999999999999999999999973
No 2
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.44 E-value=0.018 Score=51.80 Aligned_cols=138 Identities=12% Similarity=0.194 Sum_probs=91.9
Q ss_pred CCceEEEecceeEee-CCC-ceeeeccCCCceeeeEEEeecCCCceEEEeccCc-----------chhhhHHHHHHHhhc
Q 020897 60 PSKYVYVFQREYATV-DPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVV 126 (320)
Q Consensus 60 ~~~~LYV~QrE~A~~-~P~-~v~ilGSDdATTChivVlR~~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~l~ 126 (320)
+...++|.++|++++ .|. ...+||| |+.|+|.++..+.-.|+|+==| ...+.|+..|++.+.
T Consensus 6 ~~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~rY~d~ai~~Ll~~m~ 80 (167)
T PRK13498 6 GTKEIVLQPGEVVFATRPTRLRTLLGS-----CVAITFWHPQQHIGGMCHFMLPGRIRKHQPLDGRYADEAMELLIRHAL 80 (167)
T ss_pred CceEEEEeCCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcCcHHHHHHHHHHHHH
Confidence 345799999999998 455 3556776 9999999999999999998222 235889999999964
Q ss_pred -CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCc
Q 020897 127 -DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (320)
Q Consensus 127 -~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~ 205 (320)
.+....+|++.|.||=.=-.....+ ........+......+.|++.. |.|..-=+++.+-+
T Consensus 81 ~~Ga~~~~l~aKifGGA~m~~~~~~~--------~~~~~IG~rNi~~a~~~L~~~g--i~i~a~DvGG~~gR-------- 142 (167)
T PRK13498 81 ANGTPPEDYQVKLFGGGNMFPELQQD--------LHTLNVADKNIHAALALAEQNG--LHLKAQDLGSTGHR-------- 142 (167)
T ss_pred HcCCCHHHEEEEEEECcccccccccC--------cccCChHHHHHHHHHHHHHHCC--CcEEEEeCCCCCCc--------
Confidence 4555679999999994422100000 0013456667777777777654 34444334433321
Q ss_pred ceEEEEEEEecCCeeeccc
Q 020897 206 PIFHGFLVETCTGSLSPAS 224 (320)
Q Consensus 206 Pii~Gi~VnvkTG~ifPAs 224 (320)
=+.+++.||++.=-.
T Consensus 143 ----~i~f~~~tG~v~vk~ 157 (167)
T PRK13498 143 ----SIIFDLWNGNVWVRH 157 (167)
T ss_pred ----EEEEECCCCEEEEEE
Confidence 367888888885443
No 3
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.41 E-value=0.018 Score=51.42 Aligned_cols=136 Identities=11% Similarity=0.183 Sum_probs=91.4
Q ss_pred ceEEEecceeEee-CCC-ceee-eccCCCceeeeEEEeecCCCceEEEeccC------------cchhhhHHHHHHHhhc
Q 020897 62 KYVYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN------------PEIVDIGLCQMLSLVV 126 (320)
Q Consensus 62 ~~LYV~QrE~A~~-~P~-~v~i-lGSDdATTChivVlR~~~sG~t~laH~Dg------------s~~v~~~v~~ml~~l~ 126 (320)
..++|..+|++++ .|. ...+ ||| |+.|+|.++..+.-.|+|+== ...++.|+..|++.+.
T Consensus 4 ~~i~v~ige~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Li~~m~ 78 (162)
T PRK13490 4 KEIKVGIADLNVAKSPDKIITVGLGS-----CIGIALYDGIKCIGGLSHIMLPDSTQFSNVTNPMKFADLAIPILIEKME 78 (162)
T ss_pred cEEEEEeCCEEEECCCCEEEEEcCcc-----eEEEEEEcCCCCEEEEEEEECCCCccCCCCCCCccCHHHHHHHHHHHHH
Confidence 3678999999999 676 3555 776 999999999999999999721 1235889999999974
Q ss_pred -CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCc
Q 020897 127 -DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (320)
Q Consensus 127 -~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~ 205 (320)
.+....+|++.|.||=+=-... . .. ......++......+.|.+.. |.+..-=+++.+.+
T Consensus 79 ~~Ga~~~~l~aKifGGA~m~~~~-----~---~~-~~~~IG~rNv~~a~~~L~~~g--I~i~a~dvGG~~gR-------- 139 (162)
T PRK13490 79 KLGANKRNLKAKIAGGASMFNFS-----D---KS-MVMDIGNRNGKAVKKKLKELS--IPILAEDIGGNKGR-------- 139 (162)
T ss_pred HcCCCHHHEEEEEEeCccccCCC-----C---cc-ccCChhHHHHHHHHHHHHHcC--CcEEEEECCCCCCc--------
Confidence 4555779999999996532100 0 00 013456667777777777654 44444444544432
Q ss_pred ceEEEEEEEecCCeeecccc
Q 020897 206 PIFHGFLVETCTGSLSPASF 225 (320)
Q Consensus 206 Pii~Gi~VnvkTG~ifPAsF 225 (320)
=+-+++.||++.=-..
T Consensus 140 ----~i~f~~~tG~v~vk~~ 155 (162)
T PRK13490 140 ----TMIFDTSDGKVYIKTV 155 (162)
T ss_pred ----EEEEECCCCEEEEEEc
Confidence 3677888888865443
No 4
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.22 E-value=0.052 Score=50.68 Aligned_cols=132 Identities=12% Similarity=0.128 Sum_probs=92.2
Q ss_pred CceEEEecceeEeeC-CCcee-eeccCCCceeeeEEEeecCCCceEEEeccC--------------------cchhhhHH
Q 020897 61 SKYVYVFQREYATVD-PALVD-YVGTDEATTCVGLVIRNRRNRMTSIAHMDN--------------------PEIVDIGL 118 (320)
Q Consensus 61 ~~~LYV~QrE~A~~~-P~~v~-ilGSDdATTChivVlR~~~sG~t~laH~Dg--------------------s~~v~~~v 118 (320)
...++|..+|++++. |..+. +||| |+.|+|.++..+...|+|+== ....+.|+
T Consensus 28 ~~~v~l~pGe~~v~~~~~~itT~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~~~~~~~~rY~d~Am 102 (213)
T PRK13493 28 RHWVKVMPGGVYATSDQEIIHTGLGS-----CVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALLSDSSRYGCYAM 102 (213)
T ss_pred ceEEEEecCeEEEECCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEEcCCCcccCccccccccccCCccccHHHHH
Confidence 457889999999984 44433 4775 999999999999999999721 22346799
Q ss_pred HHHHHhhc-CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCc
Q 020897 119 CQMLSLVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTK 197 (320)
Q Consensus 119 ~~ml~~l~-~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~ 197 (320)
..|++.|. .+....+|++.|.||=+=-.. .....++......+.|.+... .+..-=|++.+.+
T Consensus 103 ~~Li~~m~~~Ga~~~~l~aKifGGA~m~~~--------------~~~IG~rNi~~a~~~L~~~gI--~Iva~DvGG~~gR 166 (213)
T PRK13493 103 EVLINRLLSMGAERERLKFKLFGGAHLMGY--------------QSLVGEKNVEFVLEYAKREKL--NVVAQDLGGAQPR 166 (213)
T ss_pred HHHHHHHHHcCCCHHHeEEEEEeCcccccc--------------cccHhHHHHHHHHHHHHHcCC--cEEEEeCCCCCCc
Confidence 99999864 455567999999999653210 034666777777788877554 4444445544432
Q ss_pred ccCCCCCcceEEEEEEEecCCeeecccc
Q 020897 198 RDSQGNAYPIFHGFLVETCTGSLSPASF 225 (320)
Q Consensus 198 ~~~~g~~~Pii~Gi~VnvkTG~ifPAsF 225 (320)
=+.+++.||++.=-..
T Consensus 167 ------------ki~f~~~tG~v~vk~~ 182 (213)
T PRK13493 167 ------------KLLFDPQTGQAWVKRI 182 (213)
T ss_pred ------------EEEEECCCCEEEEEEc
Confidence 3678888888866555
No 5
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.13 E-value=0.034 Score=49.53 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=90.9
Q ss_pred eEEEecceeEeeC-CC-ceee-eccCCCceeeeEEEeecCCCceEEEeccCc-----------chhhhHHHHHHHhhc-C
Q 020897 63 YVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVV-D 127 (320)
Q Consensus 63 ~LYV~QrE~A~~~-P~-~v~i-lGSDdATTChivVlR~~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~l~-~ 127 (320)
-++|.++|++++. |. ...+ ||| |+.|+|.++..+.-.|+|+==| ...+.++..|++.+. .
T Consensus 3 ~v~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~li~~m~~~ 77 (157)
T PRK13488 3 VIKVGIGEYAVGKSPEVIETSGLGS-----CVGIILYDRGKKIGGLAHVMLPESSGAGDRNPGKYADTAIPLLIEEMVKL 77 (157)
T ss_pred cEEEecCcEEEECCCCEEEEEcCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcccHHHHHHHHHHHHHHc
Confidence 4679999999985 44 3555 675 9999999999999999997322 235789999999974 4
Q ss_pred CCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCcce
Q 020897 128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPI 207 (320)
Q Consensus 128 ~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pi 207 (320)
+....+|++.|.||=.=-... ....+..++......+.|++.. |.+..-=|++.+-+
T Consensus 78 Ga~~~~l~akifGGA~m~~~~-----------~~~~~IG~rNi~~a~~~L~~~g--i~i~a~dvGG~~gR---------- 134 (157)
T PRK13488 78 GARKSKLEAKLAGGAAMFDFS-----------SNNLNIGERNIESAKETLKKLG--IRIVAEDVGGDYGR---------- 134 (157)
T ss_pred CCCHHHEEEEEEeCcccccCC-----------CccCChHHHHHHHHHHHHHHCC--CcEEEEEcCCCCCc----------
Confidence 556789999999995432100 0013455667777777777654 44444445544432
Q ss_pred EEEEEEEecCCeeecccc
Q 020897 208 FHGFLVETCTGSLSPASF 225 (320)
Q Consensus 208 i~Gi~VnvkTG~ifPAsF 225 (320)
=+-+++.||++.=-..
T Consensus 135 --~i~f~~~tG~v~vk~~ 150 (157)
T PRK13488 135 --TVKFDLKTGKVIVRKA 150 (157)
T ss_pred --EEEEECCCCEEEEEEc
Confidence 3678888888865443
No 6
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.12 E-value=0.032 Score=51.71 Aligned_cols=133 Identities=10% Similarity=0.109 Sum_probs=92.7
Q ss_pred CCceEEEecceeEee-CCCc--eeeeccCCCceeeeEEEeecCCCceEEEeccCc----------chhhhHHHHHHHhhc
Q 020897 60 PSKYVYVFQREYATV-DPAL--VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP----------EIVDIGLCQMLSLVV 126 (320)
Q Consensus 60 ~~~~LYV~QrE~A~~-~P~~--v~ilGSDdATTChivVlR~~~sG~t~laH~Dgs----------~~v~~~v~~ml~~l~ 126 (320)
.-..+||.++|++++ .|.. --+||| |+.|+|.++..+.-.|+|+==+ ...+.|+..|++.|.
T Consensus 12 ~~~~v~V~~Ge~~vs~~p~~litT~LGS-----CVaV~LyDp~~~IGGM~H~mLP~~~~~~~~~~rYgd~Ai~~Li~~m~ 86 (199)
T PRK13491 12 QISITHVTQGSCVASDSPNEVYATILGS-----CICTCMCDPVAGVGGMNHFLLPSADVEDAQHLRYGSHAMELLINALL 86 (199)
T ss_pred eEEEEEEecCcEEEECCCCEEEEEeccc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 456799999999998 5653 345776 9999999999999999998333 235789999999864
Q ss_pred -CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCc
Q 020897 127 -DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (320)
Q Consensus 127 -~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~ 205 (320)
.+....+|++.|.||=.=-.. .....++......+.|.+.. |.|.--=+++.+-
T Consensus 87 ~~Ga~~~~L~AKifGGA~M~~~--------------~~~IG~rNie~a~~~L~~~G--I~ivaeDvGG~~g--------- 141 (199)
T PRK13491 87 KLGAARQRIEAKIFGGAMMTPQ--------------LGAIGQANAAFARRYLRDEG--IRCTAHSLGGNRA--------- 141 (199)
T ss_pred HcCCCHHHeEEEEEeCcccccc--------------cccHHHHHHHHHHHHHHHcC--CcEEEEeCCCCCC---------
Confidence 455567999999999653210 02355566666667776654 3344434444332
Q ss_pred ceEEEEEEEecCCeeecccc
Q 020897 206 PIFHGFLVETCTGSLSPASF 225 (320)
Q Consensus 206 Pii~Gi~VnvkTG~ifPAsF 225 (320)
.=+.+++.||++.=-..
T Consensus 142 ---RkI~f~~~tG~v~vk~~ 158 (199)
T PRK13491 142 ---RRIRFWPKTGRVQQMFL 158 (199)
T ss_pred ---cEEEEECCCCEEEEEEc
Confidence 13778999999965444
No 7
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.10 E-value=0.081 Score=48.40 Aligned_cols=133 Identities=14% Similarity=0.184 Sum_probs=92.1
Q ss_pred CCceEEEecceeEee-CCC-ce-eeeccCCCceeeeEEEeecCCCceEEEeccC-------------cchhhhHHHHHHH
Q 020897 60 PSKYVYVFQREYATV-DPA-LV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (320)
Q Consensus 60 ~~~~LYV~QrE~A~~-~P~-~v-~ilGSDdATTChivVlR~~~sG~t~laH~Dg-------------s~~v~~~v~~ml~ 123 (320)
-.+-++|.++|++++ .|. .+ -+||| |+.|+|.++..+.-.|+|+== ....+.++..|++
T Consensus 6 ~~~~v~v~~Ge~~v~~~p~~~itt~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~ai~~Li~ 80 (184)
T PRK13497 6 AARRVHIIQGEYKVVNDPNVVLSTILGS-----CVAACLRDPVAGVGGMNHFLLPGSATSPTSGGDATRYGVHLMELLIN 80 (184)
T ss_pred cCceEEEecCcEEEECCCCEEEEEeCcc-----ceEEEEEcCCCCEEEEEEEECCCCCCcCCCCCCccchHHHHHHHHHH
Confidence 456899999999998 554 33 45776 999999999999999999721 1235789999999
Q ss_pred hhc-CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCC
Q 020897 124 LVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQG 202 (320)
Q Consensus 124 ~l~-~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g 202 (320)
.+. .+....+|++.|.||=.=-.. .....++......+.|.+....+ .--=+++.+-+
T Consensus 81 ~m~~~Ga~~~~l~aKifGGA~m~~~--------------~~~IG~rNi~~a~~~L~~~gI~i--~a~DvGG~~gR----- 139 (184)
T PRK13497 81 GLLKQGARRDRLEAKIFGGAKTIAT--------------FSNVGEQNAAFAMQFLRDEGIPV--VGSSTGGEHGR----- 139 (184)
T ss_pred HHHHcCCCHHHEEEEEEeCchhccc--------------cccHHHHHHHHHHHHHHHcCCcE--EEEeCCCCCCc-----
Confidence 864 455567999999999653210 13466677777777787765443 33334443321
Q ss_pred CCcceEEEEEEEecCCeeecccc
Q 020897 203 NAYPIFHGFLVETCTGSLSPASF 225 (320)
Q Consensus 203 ~~~Pii~Gi~VnvkTG~ifPAsF 225 (320)
=+-+++.||++.--..
T Consensus 140 -------~v~f~~~tG~v~~k~~ 155 (184)
T PRK13497 140 -------KLEYWPVSGRARQYPL 155 (184)
T ss_pred -------EEEEECCCCeEEEEEc
Confidence 3677888888854433
No 8
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.02 E-value=0.036 Score=49.52 Aligned_cols=130 Identities=18% Similarity=0.242 Sum_probs=89.6
Q ss_pred EEEecceeEee-CCC-ceee-eccCCCceeeeEEEeecCCCceEEEeccCc-----------chhhhHHHHHHHhhc-CC
Q 020897 64 VYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLVV-DH 128 (320)
Q Consensus 64 LYV~QrE~A~~-~P~-~v~i-lGSDdATTChivVlR~~~sG~t~laH~Dgs-----------~~v~~~v~~ml~~l~-~~ 128 (320)
+||.++|+++. .|. ...+ ||| |+.|+|.++..+.-.|+|+==| ...+.++..|++.+. .+
T Consensus 4 v~v~~Ge~~v~~~p~~l~T~~LGS-----CVaV~l~Dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~Li~~m~~~G 78 (159)
T PRK13495 4 KVIGIGEYAVMKNPGVIVTLGLGS-----CVGVCMRDPVAKVGAMAHVMLPDSGGKETDKPGKYADTAIKTLVEELKKMG 78 (159)
T ss_pred EEEecCcEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHcC
Confidence 68999999998 555 3554 776 9999999999999999997221 235789999999974 45
Q ss_pred CCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCcceE
Q 020897 129 DLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIF 208 (320)
Q Consensus 129 ~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pii 208 (320)
....+|++.|.||=.=-... .....++...-..+.|.+.... +..-=+++..-+
T Consensus 79 a~~~~l~aKifGGA~m~~~~-------------~~~IG~rNi~~a~~~L~~~gI~--i~a~dvGG~~gR----------- 132 (159)
T PRK13495 79 AKVERLEAKIAGGASMFESS-------------GMNIGARNVEAVKKHLKDFGIK--LVAEDTGGNRAR----------- 132 (159)
T ss_pred CCHHHEEEEEEeCCccCCCC-------------CCChHHHHHHHHHHHHHHcCCc--EEEEeCCCCCCc-----------
Confidence 55679999999996543100 1345666677777777765443 333334443321
Q ss_pred EEEEEEecCCeeecccc
Q 020897 209 HGFLVETCTGSLSPASF 225 (320)
Q Consensus 209 ~Gi~VnvkTG~ifPAsF 225 (320)
=+-+++.||++.=-..
T Consensus 133 -~i~f~~~tG~v~vk~~ 148 (159)
T PRK13495 133 -SIEYNIETGKLLVRKV 148 (159)
T ss_pred -EEEEECCCCEEEEEEc
Confidence 3677888888864443
No 9
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.02 E-value=0.29 Score=45.40 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=95.0
Q ss_pred CceEEEecceeEee-CCC-ceeeeccCCCceeeeEEEeecCCCceEEEeccCc-------------chhhhHHHHHHHhh
Q 020897 61 SKYVYVFQREYATV-DPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-------------EIVDIGLCQMLSLV 125 (320)
Q Consensus 61 ~~~LYV~QrE~A~~-~P~-~v~ilGSDdATTChivVlR~~~sG~t~laH~Dgs-------------~~v~~~v~~ml~~l 125 (320)
...++|..+|++++ .|. -..+||| |+.|+|.++..+...|+|+==+ ...+.|+..|++.|
T Consensus 21 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~A~~~Li~~m 95 (201)
T PRK13487 21 CDAAKILPGEYFVTDDDTAIVTVLGS-----CVSACLRDPVLGIGGMNHFMLPDGGDSDGPLSASARYGSYAMELLINDL 95 (201)
T ss_pred cceEEEecCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 44678999999998 565 3455776 9999999999999999997322 13578999999986
Q ss_pred c-CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCC
Q 020897 126 V-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNA 204 (320)
Q Consensus 126 ~-~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~ 204 (320)
. .+....+|++.|.||=+--... ...+.......-..+.|++.. |.+..-=|++.+-+
T Consensus 96 ~~~Ga~~~~l~aKlfGGA~m~~~~------------~~~~IG~rNi~~a~~~L~~~g--I~iva~DvGG~~gR------- 154 (201)
T PRK13487 96 LKLGARRENLEAKVFGGGNVLRGF------------TSMNVGERNAEFVRDYLQTER--IPIVAEDLLDIYPR------- 154 (201)
T ss_pred HHcCCCHHHEEEEEEeCCcccCCC------------ccCCchHHHHHHHHHHHHHcC--CcEEEEECCCCCCc-------
Confidence 4 4555679999999996543110 013566677777777777654 55555556655542
Q ss_pred cceEEEEEEEecCCeeecccc
Q 020897 205 YPIFHGFLVETCTGSLSPASF 225 (320)
Q Consensus 205 ~Pii~Gi~VnvkTG~ifPAsF 225 (320)
=+.+++.||++.=-..
T Consensus 155 -----~v~f~~~tG~v~vk~~ 170 (201)
T PRK13487 155 -----KVYFFPTTGKVLVKKL 170 (201)
T ss_pred -----EEEEECCCCEEEEEEC
Confidence 3778999999965544
No 10
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.95 E-value=0.041 Score=49.46 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=89.7
Q ss_pred CceEEEecceeEeeCCC-ceeeeccCCCceeeeEEEeecCCCceEEEeccCc------------chhhhHHHHHHHhhc-
Q 020897 61 SKYVYVFQREYATVDPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP------------EIVDIGLCQMLSLVV- 126 (320)
Q Consensus 61 ~~~LYV~QrE~A~~~P~-~v~ilGSDdATTChivVlR~~~sG~t~laH~Dgs------------~~v~~~v~~ml~~l~- 126 (320)
.-.+|+.++|+++..+. ...+||| |+.|+|.++..+.-.|+|+==| ...+.|+..|++.+.
T Consensus 11 ~~~~~l~~Ge~~v~~~~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 85 (163)
T PRK13494 11 RDVTIIVPGEAFVSNDRVISTILGS-----CVAVVLYDESRNLIGMNHYVLVKSDLVISPLQRGRYGVYAIPMLIDAMLE 85 (163)
T ss_pred ccEEEEecCeEEEeCCcEEEEeCcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 44688999999999875 2455665 9999999999999999998433 125789999999864
Q ss_pred CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCcc
Q 020897 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYP 206 (320)
Q Consensus 127 ~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~P 206 (320)
.+..-.+|++.|.||=.=-... ......+...-..+.|.+.. |.+.--=+++.+-+
T Consensus 86 ~Ga~~~~l~aKifGGa~m~~~~-------------~~~IG~rNv~~a~~~L~~~g--I~i~a~DvGG~~gR--------- 141 (163)
T PRK13494 86 NGASKSNLKAKLFGGTNFMAKG-------------TIKVGLENSEFAVNTLNKYG--IPILAKDFDQSKSR--------- 141 (163)
T ss_pred cCCCHHHeEEEEEeCcccCCcc-------------cCChHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc---------
Confidence 4555679999999995533100 13455666666777777654 44444444443331
Q ss_pred eEEEEEEEecCCeeec
Q 020897 207 IFHGFLVETCTGSLSP 222 (320)
Q Consensus 207 ii~Gi~VnvkTG~ifP 222 (320)
=+-+++.||++.=
T Consensus 142 ---~i~f~~~tG~v~v 154 (163)
T PRK13494 142 ---KIFVFPENFKVIV 154 (163)
T ss_pred ---EEEEECCCCEEEE
Confidence 3667888888753
No 11
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.82 E-value=0.035 Score=50.08 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCceEEEecceeEeeC-CC--ceeeeccCCCceeeeEEEeecCCCceEEEeccC-------------cchhhhHHHHHHH
Q 020897 60 PSKYVYVFQREYATVD-PA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (320)
Q Consensus 60 ~~~~LYV~QrE~A~~~-P~--~v~ilGSDdATTChivVlR~~~sG~t~laH~Dg-------------s~~v~~~v~~ml~ 123 (320)
..+.+=|-|+|++++. |. ....||| |+.|+||...+|...|+|+== .+..+.++..|++
T Consensus 6 ~~~~v~Vg~ge~~v~~~p~~i~ttgLGS-----CV~v~l~D~~~~vgGm~H~mLP~s~~~~~~~~~~~kY~d~ame~Lin 80 (164)
T COG1871 6 ARKEVKVGIGEYKVTKDPDVIITTGLGS-----CVGVCLRDPVNGVGGMNHFMLPDSALSGSPLSNPAKYGDTAMELLIN 80 (164)
T ss_pred hCCEEEEeeeeEEEecCCCEEEEecccc-----eEEEEEEccccCccceeEEeccCCCCCCCcCCchhhHHHHHHHHHHH
Confidence 5678889999999995 46 3677776 999999999999999999721 2224678888888
Q ss_pred hh-cCCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhccc
Q 020897 124 LV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQ 181 (320)
Q Consensus 124 ~l-~~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~ 181 (320)
.| ..+..-.|||.-|.||-.==. + .+.....++...-+.+.|.+..
T Consensus 81 ~ll~~GA~r~rL~AKlfGGa~mf~----~--------~s~m~IG~rNv~~~~~~L~~~~ 127 (164)
T COG1871 81 ELLKLGASRERLEAKLFGGAQMFA----F--------NSMMKIGERNVEFAKEFLKDEG 127 (164)
T ss_pred HHHHcCCChhhheeeecccHHHHh----c--------cchhhhhhHHHHHHHHHHHHcC
Confidence 75 556567799999999942210 0 0002344556666667666643
No 12
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.71 E-value=0.05 Score=51.56 Aligned_cols=135 Identities=11% Similarity=0.137 Sum_probs=93.5
Q ss_pred CceEEEecceeEeeCCC-c-eeeeccCCCceeeeEEEeecCCCceEEEeccCc--------------chhhhHHHHHHHh
Q 020897 61 SKYVYVFQREYATVDPA-L-VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP--------------EIVDIGLCQMLSL 124 (320)
Q Consensus 61 ~~~LYV~QrE~A~~~P~-~-v~ilGSDdATTChivVlR~~~sG~t~laH~Dgs--------------~~v~~~v~~ml~~ 124 (320)
...++|.++||+++.+. . .-+||| |+.|+|+++..+.-.|.|+==+ ...+.++..|++.
T Consensus 18 ~~~v~l~pGE~~Vs~~~~vItTvLGS-----CVaV~LyDp~~~IGGM~HfmLP~~~~~~~~~~~~~~rYgd~Ame~Li~~ 92 (233)
T PRK13489 18 RPGVKLLPNEFYTTREDMVLVTVLGS-----CVAACLHDPVAGIGGMNHFMLPDDGADAGAAASESMRYGAYAMEVLINE 92 (233)
T ss_pred cceEEEecCeEEEeCCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEECCCCcccCccCCCCCcccHHHHHHHHHHH
Confidence 44788999999999764 2 344665 9999999999999999997211 2357899999998
Q ss_pred hc-CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCC
Q 020897 125 VV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGN 203 (320)
Q Consensus 125 l~-~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~ 203 (320)
|. .+....+|++.|.||=.--... ...++.+....-.++.|.+.. |.|.--=|++..-
T Consensus 93 m~~~Ga~r~~L~AKifGGA~m~~~~------------~~~~IG~RNieaa~~~L~~~g--I~IvaeDvGG~~g------- 151 (233)
T PRK13489 93 LIKAGGRRERFEAKVFGGAAVLAGM------------TTINIGDRNADFVRRYLALER--IRITAEDLQGVHP------- 151 (233)
T ss_pred HHHcCCCHHHEEEEEEECccccCCC------------CcCChhHHHHHHHHHHHHHcC--CcEEEEeCCCCCC-------
Confidence 64 4555779999999996543110 013566677777777777754 3444333443322
Q ss_pred CcceEEEEEEEecCCeeeccccC
Q 020897 204 AYPIFHGFLVETCTGSLSPASFD 226 (320)
Q Consensus 204 ~~Pii~Gi~VnvkTG~ifPAsF~ 226 (320)
.=|.+++.||++.=-...
T Consensus 152 -----RkV~f~~~TG~v~Vk~~~ 169 (233)
T PRK13489 152 -----RKVAFMPRTGRAMVKKLR 169 (233)
T ss_pred -----cEEEEECCCCEEEEEEcC
Confidence 137788999999766653
No 13
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=32.26 E-value=51 Score=27.49 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=47.7
Q ss_pred chhhhHHHHHHHhhc-CCCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeE
Q 020897 112 EIVDIGLCQMLSLVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLH 190 (320)
Q Consensus 112 ~~v~~~v~~ml~~l~-~~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~C 190 (320)
..++.++..|+..+. .+....+|++.|+||=+=-.. .................+.|.+ ..|++.-.=
T Consensus 17 rY~d~ai~~ll~~m~~~Ga~~~~l~aklfGGa~m~~~----------~~~~~~~IG~rNv~~a~~~L~~--~gi~I~a~d 84 (114)
T PF03975_consen 17 RYGDTAIELLLDEMEKRGARPSRLEAKLFGGANMFPG----------MNSSSFNIGERNVEAARELLAE--EGIPIVAED 84 (114)
T ss_dssp CBHHHHHHHHHHHHHTTT--GGG-EEEEEE----S----------------SS-HHHHHHHHHHHHHHH--TT--EEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHeEEEEeeCcccccc----------cccccCCHHHHHHHHHHHHHHH--CCCcEEEee
Confidence 446899999999974 355678999999999654410 0000133444555555555554 446777666
Q ss_pred eccCCCcccCCCCCcceEEEEEEEecCCeeecc
Q 020897 191 VLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPA 223 (320)
Q Consensus 191 V~~~Nt~~~~~g~~~Pii~Gi~VnvkTG~ifPA 223 (320)
|++..-+ =+-+++.||+++=-
T Consensus 85 vGG~~~R------------~v~f~~~tG~v~vk 105 (114)
T PF03975_consen 85 VGGNFGR------------KVRFDPATGEVWVK 105 (114)
T ss_dssp E-SSS-E------------EEEEETTTTEEEEE
T ss_pred CCCCCCc------------EEEEEcCCCEEEEE
Confidence 7665542 36788888888643
No 14
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=23.79 E-value=5.3e+02 Score=23.05 Aligned_cols=64 Identities=17% Similarity=0.241 Sum_probs=37.8
Q ss_pred eeeeccCC----CceeeeE-EE-eecCCCceEEEeccCcchh---------hhHH----HHHHHh-hc-CCCCCCceeEE
Q 020897 79 VDYVGTDE----ATTCVGL-VI-RNRRNRMTSIAHMDNPEIV---------DIGL----CQMLSL-VV-DHDLDAELDVY 137 (320)
Q Consensus 79 v~ilGSDd----ATTChiv-Vl-R~~~sG~t~laH~Dgs~~v---------~~~v----~~ml~~-l~-~~~~~g~levh 137 (320)
--+||||. -.||..- ++ ...|.|+.|.-|-.-.... |..+ +..|.. |. .+..+..+|+|
T Consensus 20 ki~IGTDSQ~~~~~T~FvTaIvihR~GkGa~~f~~~~~~r~~~slreRi~~Et~~S~e~A~~l~~~l~~~~~~~~~~EiH 99 (144)
T PF04308_consen 20 KIIIGTDSQVKGDETCFVTAIVIHREGKGARYFYHKKKERKIMSLRERIFYETSLSLEVAEKLCDLLLPYGYADVDLEIH 99 (144)
T ss_pred EEEEecCCCcCCCceEEEEEEEEEEecCceEEEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEE
Confidence 45789996 3456432 22 2358899999998876652 2222 222222 32 23357899999
Q ss_pred Eeccc
Q 020897 138 LIGGF 142 (320)
Q Consensus 138 LVGGF 142 (320)
|=-|-
T Consensus 100 iDIg~ 104 (144)
T PF04308_consen 100 IDIGT 104 (144)
T ss_pred EEcCC
Confidence 96655
Done!