Query 020898
Match_columns 320
No_of_seqs 168 out of 1214
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-34 4.8E-39 264.8 28.7 282 8-304 196-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.6 1.6E-16 5.4E-21 143.2 7.0 243 10-282 184-432 (451)
3 2cfq_A Lactose permease; trans 99.5 3.7E-15 1.3E-19 133.3 5.3 141 140-292 267-408 (417)
4 3o7q_A L-fucose-proton symport 99.5 2.8E-13 9.5E-18 121.5 16.8 172 84-276 251-425 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.4 4.3E-12 1.5E-16 115.6 14.3 169 117-290 304-478 (491)
6 1pw4_A Glycerol-3-phosphate tr 99.4 9.9E-12 3.4E-16 111.7 14.7 165 115-289 47-212 (451)
7 3o7q_A L-fucose-proton symport 99.3 3.8E-11 1.3E-15 107.5 14.8 134 114-257 44-177 (438)
8 2gfp_A EMRD, multidrug resista 99.2 1.3E-11 4.5E-16 108.4 8.0 161 117-290 21-181 (375)
9 4aps_A DI-OR tripeptide H+ sym 99.2 2E-10 6.8E-15 104.6 14.0 145 126-283 49-196 (491)
10 2xut_A Proton/peptide symporte 99.2 4E-10 1.4E-14 103.5 13.8 151 118-280 34-195 (524)
11 2gfp_A EMRD, multidrug resista 99.1 1E-11 3.5E-16 109.1 1.0 207 10-268 152-361 (375)
12 4gc0_A D-xylose-proton symport 99.1 2.9E-09 9.9E-14 96.8 15.1 112 141-252 64-181 (491)
13 2xut_A Proton/peptide symporte 98.7 4E-08 1.4E-12 90.0 10.3 80 215-294 423-513 (524)
14 2cfq_A Lactose permease; trans 98.4 3.2E-08 1.1E-12 88.2 -0.2 79 87-171 3-82 (417)
15 2g9p_A Antimicrobial peptide l 58.2 6.6 0.00023 18.2 1.7 14 151-164 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-34 Score=264.85 Aligned_cols=282 Identities=32% Similarity=0.589 Sum_probs=206.7
Q ss_pred CCchHHHHhhhhHHHHHHHHHhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhh
Q 020898 8 PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDV 87 (320)
Q Consensus 8 ~~~WR~~f~i~~~~~l~~~~~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (320)
...||+++.+..+++++.++.++++||||||+..+++.||+.+.+++.+..+..+++..+..+..+++++ .......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 272 (491)
T 4gc0_A 196 TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRK---TGGRLLM 272 (491)
T ss_dssp TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTHHHH
T ss_pred chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhh---hhhHHHH
Confidence 3479999999999999999999999999999999999999999998876654443333322222211111 1122223
Q ss_pred ccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020898 88 FKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 167 (320)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~ 167 (320)
++.+.. ........+.++.+++.+.+|.|.+.+..+.+... ....+.+..+...++.+++++++||+|||+.+..
T Consensus 273 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~ 347 (491)
T 4gc0_A 273 FGVGVI----VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI-ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII 347 (491)
T ss_dssp SCCTHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred hcccHH----HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhcc
Confidence 332222 33334456667788888888999999888876544 3445556667788999999999999999999887
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHH
Q 020898 168 SLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNL 247 (320)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~ 247 (320)
+...+.++...+........ ..+..+....++...+..+.+++.|.+.+|+||++.|+++.|++...++++++
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~ 420 (491)
T 4gc0_A 348 GALGMAIGMFSLGTAFYTQA-------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANY 420 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 77766666655544433221 12334455555666777788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH------HhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHHHhcccc
Q 020898 248 IVAQTFLTVAE------LVGTGATFLILAGIAVLAVVFVILFVPETQGLTFLEVEQMWKERAW 304 (320)
Q Consensus 248 ~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~~~~~~~~~~~~~ 304 (320)
+++.++|.+.+ ..+....|++++++++++.+++++++|||||+++||||+.++++..
T Consensus 421 i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 421 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 99888876543 2345567888899999998888999999999999999999977653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.64 E-value=1.6e-16 Score=143.24 Aligned_cols=243 Identities=16% Similarity=0.231 Sum_probs=139.4
Q ss_pred chHHHHhhhhHHHHHHHH-HhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020898 10 TWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF 88 (320)
Q Consensus 10 ~WR~~f~i~~~~~l~~~~-~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (320)
+||+.|++.++++++..+ .++.+||+|+....+.++++. +. .+.+. ++.+++....++...++.+
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------ND--YPDDY----NEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------CC-------------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc--------cc--ccccc----hhhhhcccccccchHHHHH
Confidence 499999999988876544 456789999764222111100 00 00000 0000001111111135567
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHH
Q 020898 89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GRKKLA 165 (320)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~--grR~~~ 165 (320)
+++..+...+..... ..+.+....+.|.++++ .|.+....+. ......+..+++.++.++++||+ |||+.+
T Consensus 250 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 250 PNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSW-AYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp SCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred cCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 777666544432221 12223344566777776 6766544443 44455566789999999999999 999876
Q ss_pred HHHhHHHH-HHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHH
Q 020898 166 LSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWI 244 (320)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~ 244 (320)
..+..... ++... +..... ... +.......+ ..+...+..+..+.+..|.+|++.|+++.|+.+...++
T Consensus 324 ~~~~~~~~~~~~~~----~~~~~~---~~~--~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 324 GVFFMTLVTIATIV----YWMNPA---GNP--TVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HHHHHHHHHHHHHH----TTSCCT---TCH--HHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHhcc---cCH--HHHHHHHHH-HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 65443322 22211 111110 011 111222222 22222233444567889999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 020898 245 -SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 282 (320)
Q Consensus 245 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 282 (320)
++.+++.+...+.+..|+...|.+.+++.+++.++..+
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888877777776665443
No 3
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.53 E-value=3.7e-15 Score=133.33 Aligned_cols=141 Identities=11% Similarity=0.053 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccch
Q 020898 140 AVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPW 219 (320)
Q Consensus 140 ~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (320)
...+..+++.++.++++||+|||+.+..+.....+....+ .... .. +..++...+.... .....+..+
T Consensus 267 ~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~----~~~~-----~~--~~~~~~~~l~~~~-~~~~~~~~~ 334 (417)
T 2cfq_A 267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS----SFAT-----SA--LEVVILKTLHMFE-VPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----TTCC-----SH--HHHHHHTTHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH----HHhc-----cH--HHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444567888999999999999998765544433332211 1111 11 1111111111111 111122346
Q ss_pred hcccccCCccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 020898 220 TLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGLTF 292 (320)
Q Consensus 220 ~~~~ElfP~~~R~~~~gi~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pet~g~~~ 292 (320)
.+.+|.+|++.|+++.|+. +..+++++.+++.+.+.+.+..|+...|.+.+++.+++.+..+++.||++..++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 7889999999999999985 677778888888888877777777677887777777777766667787765543
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=2.8e-13 Score=121.52 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=105.6
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHH-HHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020898 84 YLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGR 161 (320)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~gr 161 (320)
+++++++|..+...+....... .......+.|.+ +++. |.+...... ......+..+++.+++++++||+||
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVG-----AQTACWSYLIRYAVEEIPGMTAGFAAN-YLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHSTTCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHhChHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456777777665444222211 112233455666 6665 766554444 4444556678999999999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHH
Q 020898 162 KKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATV 241 (320)
Q Consensus 162 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~ 241 (320)
|+.+..+.....++...+.. .. . ...+....+ ..++.....+..+.+..|.+|++ |+.+.++.. .
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~----~~-----~---~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 389 (438)
T 3o7q_A 325 HKVLAAYALIAMALCLISAF----AG-----G---HVGLIALTL-CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-M 389 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CC-----H---HHHHHHHHH-HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHH----cC-----C---cHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-H
Confidence 99887665554444333221 11 1 111122222 22223334566678888999987 888888777 6
Q ss_pred HHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHH
Q 020898 242 NWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLA 276 (320)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~ 276 (320)
+.+++.+++.+...+.+..| +...|.+.+.+.++.
T Consensus 390 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 77888899998888888888 777777655444443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.39 E-value=4.3e-12 Score=115.62 Aligned_cols=169 Identities=12% Similarity=0.028 Sum_probs=91.2
Q ss_pred eehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-----HHhHHHHHHHHHHHHHHHhcCCCC
Q 020898 117 YYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAGVIISLVLLSWAFISGSSAS 190 (320)
Q Consensus 117 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 190 (320)
.+.|.+.++ .+.+....... .........++.++.++++||+|||+... .+.....++...+...........
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWF-QSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGG-TTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred HHHHHHHHHHhccCccCHHHH-hccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345555554 34332222222 23334446777888899999999986533 333333333322222211111000
Q ss_pred CCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Q 020898 191 SSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILA 270 (320)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 270 (320)
.... +.......+ .........+..+.+..|.+|++.|+++.|+.+...++++.+++.+.+.+.+ .++...|.+++
T Consensus 383 ~~~~--~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~ 458 (491)
T 4aps_A 383 KVSP--LWLVGSWAL-VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFG 458 (491)
T ss_dssp TCCT--HHHHHHHHH-HHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTH
T ss_pred CccH--HHHHHHHHH-HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 0111 112222222 2222233456667899999999999999999999999999988877655443 34556777777
Q ss_pred HHHHHHHHHHHhhcccCCCC
Q 020898 271 GIAVLAVVFVILFVPETQGL 290 (320)
Q Consensus 271 ~~~~~~~~~~~~~~pet~g~ 290 (320)
++++++.++.+++.|+++++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 459 LGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777666777776654
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=9.9e-12 Score=111.73 Aligned_cols=165 Identities=14% Similarity=0.096 Sum_probs=111.8
Q ss_pred eeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcc
Q 020898 115 VMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGV 194 (320)
Q Consensus 115 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (320)
...+.|.+.++. .+..+.+...+ ...+...++.+++|+++||+|||+.+..+.....++.+..........+ .
T Consensus 47 ~~~~~~~~~~~~-~s~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~----~- 119 (451)
T 1pw4_A 47 FALAMPYLVEQG-FSRGDLGFALS-GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS----I- 119 (451)
T ss_dssp HHHHHHHTTSST-TCSSCHHHHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS----S-
T ss_pred HHHHHHHHHHHh-ccHhHHHHHHH-HHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc----H-
Confidence 344567777777 76666555544 4455578999999999999999998887776666555544331100111 1
Q ss_pred hhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHH
Q 020898 195 YGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIA 273 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~ 273 (320)
+..+++ .+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..| |...|.+.+.+.
T Consensus 120 --~~l~~~-~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~ 196 (451)
T 1pw4_A 120 --AVMFVL-LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196 (451)
T ss_dssp --SHHHHH-HHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHH
T ss_pred --HHHHHH-HHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111111 2222222223345556888999999999999999999888998888887777677787 888888888777
Q ss_pred HHHHHHHHhhcccCCC
Q 020898 274 VLAVVFVILFVPETQG 289 (320)
Q Consensus 274 ~~~~~~~~~~~pet~g 289 (320)
++..++.++++||+..
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 197 ILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHCCCSST
T ss_pred HHHHHHHHhhccCCHh
Confidence 7766666677887654
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.30 E-value=3.8e-11 Score=107.50 Aligned_cols=134 Identities=16% Similarity=0.035 Sum_probs=89.9
Q ss_pred eeeeehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCc
Q 020898 114 TVMYYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSG 193 (320)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (320)
......|.+.++.+.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.+...... ..+ .
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~-----~ 116 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQS-AFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIM-----N 116 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHH-HHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTT-----C
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccc-----c
Confidence 3445567888889988776655444 44555788999999999999999998877766665555442211 111 1
Q ss_pred chhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020898 194 VYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVA 257 (320)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~ 257 (320)
+ +..++.. +..........+....+.+|.+|++.|+.+.|+......++..+++.+...+.
T Consensus 117 -~-~~l~~~~-~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 117 -Y-TLFLVGL-FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -H-HHHHHHH-HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112222 22222222334455688899999999999999999999999998888776666
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.24 E-value=1.3e-11 Score=108.38 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=108.4
Q ss_pred eehHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchh
Q 020898 117 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 196 (320)
Q Consensus 117 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (320)
...|.+.++.|.+..+.+...+ .......++.++.|+++||+|||+.+..+.....++.........
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------------ 87 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMG-AYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS------------ 87 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHH-HHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc------------
Confidence 3456677788887766554444 445557889999999999999999877766655555544433210
Q ss_pred HHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q 020898 197 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 276 (320)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 276 (320)
...+....+..........+....+.+|.+|++.|+++.|+......++..+++.+...+.+..|+...|.+.+.+.++.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11111122222222222345556788999999999999999998888888888877766666667777888777777666
Q ss_pred HHHHHhhcccCCCC
Q 020898 277 VVFVILFVPETQGL 290 (320)
Q Consensus 277 ~~~~~~~~pet~g~ 290 (320)
.+...+++||++.+
T Consensus 168 ~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 168 TFSMARWMPETRPV 181 (375)
T ss_dssp HCCCCCSSCCCSTT
T ss_pred HHHHHHHCcccCCC
Confidence 66556678887544
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.20 E-value=2e-10 Score=104.56 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=94.1
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Q 020898 126 AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDH-FGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLA 204 (320)
Q Consensus 126 ~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
.|.+..+.+.. .....+...++.+++|+++|| +|||+.+..+.....++.+.... .++ .. . .++..
T Consensus 49 ~~~s~~~~~~~-~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~----~~~----~~--~-~~~~~- 115 (491)
T 4aps_A 49 LHITRATAASI-MAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----PFG----AS--A-LFGSI- 115 (491)
T ss_dssp CCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS----CCS----TT--H-HHHHH-
T ss_pred cCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH----hhh----HH--H-HHHHH-
Confidence 67766555444 445556678999999999999 89999987766555544443221 111 11 1 11111
Q ss_pred HHHHHHhccccccchhcccccCCccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Q 020898 205 LYIAFFAPGMGPVPWTLNSEVYPEQY--RGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVIL 282 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~ElfP~~~--R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 282 (320)
+..........+....+.+|.+|++. |+++.++.+....++..+++.+...+.+..||...|.+.+...+++.+...+
T Consensus 116 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222234556688899999988 6667777778888888888888888888888888888776666655554443
Q ss_pred h
Q 020898 283 F 283 (320)
Q Consensus 283 ~ 283 (320)
.
T Consensus 196 ~ 196 (491)
T 4aps_A 196 G 196 (491)
T ss_dssp H
T ss_pred h
Confidence 3
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.15 E-value=4e-10 Score=103.47 Aligned_cols=151 Identities=11% Similarity=0.101 Sum_probs=95.9
Q ss_pred ehHH-HHHHhC------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchHHHHHHhHHHHHHHHHHHHHHHhcCCC
Q 020898 118 YSPT-IVQMAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSSA 189 (320)
Q Consensus 118 ~~~~-~~~~~g------~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~-grR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (320)
+.+. +.++.+ .+....+...+ .......++.+++|+++||+ |||+.+..+.....++.+..... .
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----~-- 106 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFH-SFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----E-- 106 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHH-HHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----S--
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----c--
Confidence 3444 445567 67666555444 44555788999999999999 99998876655554444332211 1
Q ss_pred CCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhcchhHH
Q 020898 190 SSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGTGATF 266 (320)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 266 (320)
.. . +..++. .+..........+....+.+|.+|++.|++..++ ......++..+++.+...+.+..|+...|
T Consensus 107 --~~-~-~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 107 --HS-V-QGFYTG-LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp --SC-H-HHHHHH-HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred --cc-H-HHHHHH-HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 01 1 111222 2222222333445667889999999999876665 77777888888887777777777888888
Q ss_pred HHHHHHHHHHHHHH
Q 020898 267 LILAGIAVLAVVFV 280 (320)
Q Consensus 267 ~~~~~~~~~~~~~~ 280 (320)
.+.+.+.+++.+..
T Consensus 182 ~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 182 GIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666555443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.11 E-value=1e-11 Score=109.06 Aligned_cols=207 Identities=16% Similarity=0.168 Sum_probs=109.8
Q ss_pred chHHHHhhhhHHHHHHHH-HhhcCCCChHHHHhcCCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHhccccchhhhc
Q 020898 10 TWRWMLGVSAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVF 88 (320)
Q Consensus 10 ~WR~~f~i~~~~~l~~~~-~~~~lpESp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (320)
+||+.|++.++..++..+ ....+||+|+.. +++ ++...+.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--------------------------------~~~~~~~~~~~ 196 (375)
T 2gfp_A 152 NWRACYLFLLVLCAGVTFSMARWMPETRPVD---APR--------------------------------TRLLTSYKTLF 196 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CCC--------------------------------CCTTTCSTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---ccc--------------------------------ccHHHHHHHHh
Confidence 699999999988887766 456789987541 000 01122345566
Q ss_pred cchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 020898 89 KSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALS 167 (320)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~~~ 167 (320)
++|+.+...+...... .+......+.|.++++ .|.+....+. ......+...++.++.+++.||+++|...
T Consensus 197 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~~~~~~~~~~~~~~~~l~~r~~~~~~~-- 268 (375)
T 2gfp_A 197 GNSGFNCYLLMLIGGL-----AGIAAFEACSGVLMGAVLGLSSMTVSI-LFILPIPAAFFGAWFAGRPNKRFSTLMWQ-- 268 (375)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHCSCSSHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHTTTTHHHHHHHH--
T ss_pred cCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 6666655444322211 1112222333433333 5554333333 33344455677778888888888773222
Q ss_pred HhHH-HHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhccccccchhcccccCCccchhhhHHHHHHHHHHHH
Q 020898 168 SLAG-VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISN 246 (320)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~ 246 (320)
+... ...+...+........ ..+.......+.. +......+....+..|.+| +.|+++.|+.+....++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 269 SVICCLLAGLLMWIPDWFGVM-------NVWTLLVPAALFF-FGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp HHHHHHHTSSSSSHHHHHHHH-------HHHHHHHHHHHHH-HHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccc-------cHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence 1111 1111111011110000 0111112222222 2222345666788899999 889999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhHHHH
Q 020898 247 LIVAQTFLTVAELVGTGATFLI 268 (320)
Q Consensus 247 ~~~~~~~~~~~~~~g~~~~~~~ 268 (320)
.+++.+...+.+..++...+.+
T Consensus 340 ~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 340 GVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccHHHHH
Confidence 8888777776665555444433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=2.9e-09 Score=96.78 Aligned_cols=112 Identities=15% Similarity=0.043 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHhHHHHHHHHHHHHHHHhcCCCC---CC---cchhHHHHHHHHHHHHHHhccc
Q 020898 141 VAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSAS---SS---GVYGWIAVIGLALYIAFFAPGM 214 (320)
Q Consensus 141 ~~~~~~~~~l~~g~l~Dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~ 214 (320)
..++.++|++++|+++||+|||+.+..+.....++.+...+......... .. .......++..-+.......+.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999988776655555444332110000000 00 0011222333333334434444
Q ss_pred cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHH
Q 020898 215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQT 252 (320)
Q Consensus 215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~ 252 (320)
.+....+.+|..|++.|+...++.......+..++...
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~ 181 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence 56677899999999999999888766655555554433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.73 E-value=4e-08 Score=90.02 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=49.0
Q ss_pred cccchhcccccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------cc-hhHHHHHHHHHHHHHHHHHhh
Q 020898 215 GPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELV----------GT-GATFLILAGIAVLAVVFVILF 283 (320)
Q Consensus 215 ~~~~~~~~~ElfP~~~R~~~~gi~~~~~~~~~~~~~~~~~~~~~~~----------g~-~~~~~~~~~~~~~~~~~~~~~ 283 (320)
.+..+.+..|.+|++.|+++.|+.+....+++.+++.+...+.+.. +. ...|.+++++.+++.++.+++
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALY 502 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999999999999888777654321 11 122566666666666666666
Q ss_pred cccCCCCCHHH
Q 020898 284 VPETQGLTFLE 294 (320)
Q Consensus 284 ~pet~g~~~~~ 294 (320)
.+++++++.++
T Consensus 503 ~~~~~~~~~~~ 513 (524)
T 2xut_A 503 ARSYQMQDHYR 513 (524)
T ss_dssp -----------
T ss_pred HHHhccchhhh
Confidence 77777665544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.40 E-value=3.2e-08 Score=88.16 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=48.9
Q ss_pred hccchhhHHHHHHHHHHHHHHhhcCcceeeeehHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 020898 87 VFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQ-MAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLA 165 (320)
Q Consensus 87 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~g~l~Dr~grR~~~ 165 (320)
.+++|+.+......... +.++.....+.|.+++ +.|.+..+.....+ .......++.+++|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~lsDr~Grr~~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFY-----FFIMGAYFPFFPIWLHDINHISKSDTGIIFA-AISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHH-----HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHH-HHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred cccccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56777776544432211 1122222345666555 46877666544443 44556789999999999999999987
Q ss_pred HHHhHH
Q 020898 166 LSSLAG 171 (320)
Q Consensus 166 ~~~~~~ 171 (320)
..+...
T Consensus 77 ~~~~~~ 82 (417)
T 2cfq_A 77 LWIITG 82 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.16 E-value=6.6 Score=18.22 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=11.2
Q ss_pred HHHHHHhhhcchHH
Q 020898 151 VGIYLIDHFGRKKL 164 (320)
Q Consensus 151 ~~g~l~Dr~grR~~ 164 (320)
+.|.++.++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35789999999864
Done!