BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020901
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IW8|A Chain A, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|B Chain B, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|C Chain C, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|D Chain D, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|E Chain E, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|F Chain F, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
          Length = 231

 Score = 31.2 bits (69), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 108 LITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGH 167
           L+T +I DA   AT R   + + R  P         +G   C+  + +    + S+PSGH
Sbjct: 98  LLTNMIEDAGDLAT-RSAKDHYMRIRPFAF------YGVSTCNTTEQDKLSKNGSYPSGH 150

Query: 168 TSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVF 227
           TS  +A    L+     +      RG+                +G SRV   +H   DV 
Sbjct: 151 TSTGWATALVLAEINPQRQNEILKRGYE---------------LGQSRVICGYHWQSDVD 195

Query: 228 AGGMIG-LVVATL 239
           A  ++G  VVATL
Sbjct: 196 AARVVGSAVVATL 208


>pdb|1D2T|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae
 pdb|1EOI|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae Complexed With The Transition State Analog
           Molybdate
 pdb|1EOI|B Chain B, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae Complexed With The Transition State Analog
           Molybdate
 pdb|1EOI|C Chain C, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae Complexed With The Transition State Analog
           Molybdate
          Length = 231

 Score = 31.2 bits (69), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 108 LITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGH 167
           L+T +I DA   AT R   + + R  P         +G   C+  + +    + S+PSGH
Sbjct: 98  LLTNMIEDAGDLAT-RSAKDHYMRIRPFAF------YGVSTCNTTEQDKLSKNGSYPSGH 150

Query: 168 TSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVF 227
           TS  +A    L+     +      RG+                +G SRV   +H   DV 
Sbjct: 151 TSIGWATALVLAEINPQRQNEILKRGYE---------------LGQSRVICGYHWQSDVD 195

Query: 228 AGGMIG-LVVATL 239
           A  ++G  VVATL
Sbjct: 196 AARVVGSAVVATL 208


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.142    0.471 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,611,620
Number of Sequences: 62578
Number of extensions: 460680
Number of successful extensions: 917
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 2
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)