Query 020901
Match_columns 320
No_of_seqs 338 out of 2003
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:03:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02731 Putative lipid phosph 100.0 2E-64 4.4E-69 470.4 28.0 312 1-320 20-333 (333)
2 PLN02250 lipid phosphate phosp 100.0 1.5E-62 3.2E-67 456.7 30.8 290 1-290 1-291 (314)
3 PLN02715 lipid phosphate phosp 100.0 2.2E-60 4.8E-65 443.4 30.2 267 1-268 26-292 (327)
4 KOG3030 Lipid phosphate phosph 100.0 9.4E-49 2E-53 363.5 24.7 257 7-266 2-283 (317)
5 cd03390 PAP2_containing_1_like 100.0 2.5E-35 5.5E-40 259.3 17.8 190 55-244 1-193 (193)
6 cd03384 PAP2_wunen PAP2, wunen 100.0 1.6E-29 3.6E-34 213.6 13.1 139 99-239 5-148 (150)
7 cd03396 PAP2_like_6 PAP2_like_ 99.9 3.6E-22 7.7E-27 176.3 18.8 134 94-243 63-196 (197)
8 cd03382 PAP2_dolichyldiphospha 99.9 2.5E-21 5.5E-26 165.2 17.5 116 100-241 44-159 (159)
9 cd03389 PAP2_lipid_A_1_phospha 99.9 2.8E-21 6E-26 169.1 17.8 116 99-243 70-185 (186)
10 cd03391 PAP2_containing_2_like 99.9 1.7E-21 3.6E-26 166.2 15.8 113 96-239 45-157 (159)
11 cd03392 PAP2_like_2 PAP2_like_ 99.9 3.1E-21 6.8E-26 168.0 17.7 117 99-244 63-179 (182)
12 PRK10699 phosphatidylglyceroph 99.9 2E-21 4.4E-26 174.9 15.6 147 88-244 67-230 (244)
13 cd03385 PAP2_BcrC_like PAP2_li 99.9 5.4E-21 1.2E-25 160.5 16.2 110 99-241 34-143 (144)
14 cd03383 PAP2_diacylglycerolkin 99.9 2.7E-21 5.8E-26 154.4 13.5 95 104-243 14-108 (109)
15 cd03395 PAP2_like_4 PAP2_like_ 99.9 8E-21 1.7E-25 164.9 17.2 112 104-244 63-174 (177)
16 cd03388 PAP2_SPPase1 PAP2_like 99.9 6.4E-21 1.4E-25 161.4 14.6 112 103-239 38-149 (151)
17 cd03394 PAP2_like_5 PAP2_like_ 99.9 4.2E-21 9.2E-26 152.9 10.9 102 99-240 4-105 (106)
18 PRK09597 lipid A 1-phosphatase 99.8 3.7E-19 8E-24 153.5 20.0 110 99-243 78-187 (190)
19 cd03393 PAP2_like_3 PAP2_like_ 99.8 8.2E-20 1.8E-24 149.8 14.7 109 101-240 16-124 (125)
20 PRK11837 undecaprenyl pyrophos 99.8 1.4E-19 3.1E-24 160.0 17.3 112 97-241 58-169 (202)
21 smart00014 acidPPc Acid phosph 99.8 2.3E-19 4.9E-24 144.9 12.5 111 106-239 3-114 (116)
22 cd03381 PAP2_glucose_6_phospha 99.8 1.2E-18 2.6E-23 156.8 15.7 130 103-242 20-152 (235)
23 PLN02525 phosphatidic acid pho 99.8 5.8E-18 1.2E-22 160.6 19.0 123 101-240 38-160 (352)
24 PF01569 PAP2: PAP2 superfamil 99.8 3.3E-19 7.1E-24 145.6 3.4 123 101-245 3-125 (129)
25 cd01610 PAP2_like PAP2_like pr 99.7 1.1E-16 2.4E-21 128.5 14.3 113 104-240 9-121 (122)
26 COG0671 PgpB Membrane-associat 99.7 7.5E-15 1.6E-19 129.1 21.4 121 100-248 93-215 (232)
27 cd03397 PAP2_acid_phosphatase 99.7 1.2E-15 2.6E-20 137.9 14.0 100 112-240 115-214 (232)
28 cd03380 PAP2_like_1 PAP2_like_ 99.6 3.4E-15 7.5E-20 132.9 13.7 112 100-239 95-206 (209)
29 KOG4268 Uncharacterized conser 99.6 3.8E-15 8.2E-20 122.7 11.1 119 99-247 65-183 (189)
30 KOG3146 Dolichyl pyrophosphate 99.5 5.4E-13 1.2E-17 115.3 16.5 142 72-243 31-175 (228)
31 cd03398 PAP2_haloperoxidase PA 99.5 6.6E-13 1.4E-17 120.1 13.0 135 99-240 87-230 (232)
32 cd03386 PAP2_Aur1_like PAP2_li 99.4 2.3E-11 5E-16 106.4 16.8 74 155-242 111-184 (186)
33 COG3907 PAP2 (acid phosphatase 99.3 3.3E-10 7.1E-15 97.4 16.9 178 56-249 61-242 (249)
34 KOG2822 Sphingoid base-phospha 99.2 1.2E-10 2.5E-15 109.0 9.8 132 104-256 117-250 (407)
35 PF14378 PAP2_3: PAP2 superfam 98.5 3.3E-06 7.3E-11 74.0 14.2 68 157-237 122-189 (191)
36 COG1963 Uncharacterized protei 96.8 0.028 6E-07 46.5 11.6 27 219-245 126-152 (153)
37 PF14360 PAP2_C: PAP2 superfam 96.7 0.01 2.2E-07 44.0 7.6 64 163-237 6-69 (74)
38 PF02681 DUF212: Divergent PAP 96.3 0.019 4.2E-07 47.7 7.4 18 220-237 124-141 (141)
39 KOG3058 Uncharacterized conser 86.4 32 0.00069 33.0 14.4 104 112-236 155-273 (351)
40 PF05297 Herpes_LMP1: Herpesvi 84.0 0.3 6.6E-06 45.0 -0.2 52 194-245 135-186 (381)
41 PF10261 Scs3p: Inositol phosp 81.1 26 0.00056 31.8 11.2 33 207-241 206-238 (238)
42 KOG3750 Inositol phospholipid 67.6 1E+02 0.0022 28.4 12.7 31 217-247 218-248 (270)
43 PRK02983 lysS lysyl-tRNA synth 66.0 2.3E+02 0.0049 31.8 18.3 28 99-126 76-103 (1094)
44 PF12084 DUF3561: Protein of u 48.5 1.3E+02 0.0029 23.7 8.0 84 155-239 17-101 (107)
45 PRK10726 hypothetical protein; 47.4 1.4E+02 0.003 23.5 8.6 78 156-239 15-98 (105)
46 PF10337 DUF2422: Protein of u 47.0 89 0.0019 31.0 8.1 24 225-248 193-216 (459)
47 PF06295 DUF1043: Protein of u 41.2 28 0.00061 28.4 3.0 23 226-248 2-24 (128)
48 PF14316 DUF4381: Domain of un 35.4 2.5E+02 0.0055 23.1 8.7 33 95-127 49-87 (146)
49 PF03699 UPF0182: Uncharacteri 35.4 3.1E+02 0.0067 29.5 10.2 17 106-122 285-301 (774)
50 COG4042 Predicted membrane pro 30.3 2.2E+02 0.0047 21.9 5.9 47 204-250 55-103 (104)
51 PF04238 DUF420: Protein of un 29.5 3.2E+02 0.0069 22.4 11.2 49 79-127 16-64 (133)
52 PF11190 DUF2976: Protein of u 29.1 2.6E+02 0.0056 21.3 6.5 44 201-244 38-81 (87)
53 PF09586 YfhO: Bacterial membr 29.0 7.3E+02 0.016 26.5 14.8 9 113-121 320-328 (843)
54 PRK12438 hypothetical protein; 28.7 3.5E+02 0.0077 29.9 9.4 14 16-29 206-219 (991)
55 PF05513 TraA: TraA; InterPro 28.4 3.2E+02 0.0069 22.1 8.3 42 71-120 76-117 (119)
56 TIGR02916 PEP_his_kin putative 28.3 3.7E+02 0.0081 27.9 9.6 88 166-256 2-89 (679)
57 COG5336 Uncharacterized protei 27.3 75 0.0016 25.3 3.1 15 225-239 76-90 (116)
58 PF13373 DUF2407_C: DUF2407 C- 26.6 74 0.0016 26.5 3.2 27 218-244 84-110 (140)
59 COG2899 Uncharacterized protei 26.4 2.1E+02 0.0046 26.8 6.3 37 204-240 171-207 (346)
60 PF13829 DUF4191: Domain of un 24.8 2.4E+02 0.0053 25.4 6.3 49 221-269 51-100 (224)
61 PRK00068 hypothetical protein; 23.9 4.5E+02 0.0098 29.0 9.2 11 16-26 208-218 (970)
62 PF14362 DUF4407: Domain of un 23.9 3.3E+02 0.0071 25.2 7.4 18 227-244 84-101 (301)
63 PRK11677 hypothetical protein; 23.3 79 0.0017 26.1 2.7 23 225-247 5-27 (134)
64 PF04632 FUSC: Fusaric acid re 22.8 1.9E+02 0.0041 29.8 6.1 38 213-250 379-416 (650)
65 PF02461 AMO: Ammonia monooxyg 22.8 5.9E+02 0.013 23.2 12.5 74 11-88 7-80 (245)
66 COG4980 GvpP Gas vesicle prote 22.3 1.1E+02 0.0023 24.6 3.2 24 224-247 5-28 (115)
67 COG4129 Predicted membrane pro 22.2 1.5E+02 0.0032 28.4 4.7 27 218-244 52-78 (332)
68 TIGR02230 ATPase_gene1 F0F1-AT 21.4 4E+02 0.0087 20.8 6.8 37 203-242 54-93 (100)
69 PF06365 CD34_antigen: CD34/Po 20.7 3.1E+02 0.0067 24.3 6.1 11 112-122 24-34 (202)
70 TIGR02758 TraA_TIGR type IV co 20.4 2.9E+02 0.0063 21.3 5.0 46 70-122 47-92 (93)
No 1
>PLN02731 Putative lipid phosphate phosphatase
Probab=100.00 E-value=2e-64 Score=470.39 Aligned_cols=312 Identities=64% Similarity=1.235 Sum_probs=281.9
Q ss_pred CCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCccCCCCCCCCCCccchhHHHHHHHHHHH
Q 020901 1 MREIDLGAHTIKSHGARVARNHLHDWIILLLLAVIEVVLYVIHPFYRFVGEDMMTDLKYPFKDNTVPIWAVPMYAVLLPI 80 (320)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~dw~~li~l~~~~~~l~~~~p~~rf~~~d~~~~~~~p~~~~~i~~~~~~~~~~~lp~ 80 (320)
|+++++|.||+++|+.++++.|+.||+++++++++..+++.++||+|++..|++++++||++++++|.+.+.++++++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~Dwii~~~l~~~~~i~~~~~Pf~r~f~~~~~~~isyP~~~etVp~~~l~ii~~liPi 99 (333)
T PLN02731 20 MREAQLGGHTLRSHGMTVARTHMHDWIILVLLVILECVLLIIHPFYRFVGKDMMTDLSYPLKSNTVPIWSVPVYAMLLPL 99 (333)
T ss_pred hhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcccccccCCCCCCcccHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999988887788999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCC
Q 020901 81 AIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGH 160 (320)
Q Consensus 81 ~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~ 160 (320)
++++++++++++.++++..+++++++++++.++++++|..+|||||+|+++|+|++...++. .++.+|++++..+++++
T Consensus 100 ~iii~~~~~~r~~~~l~~~ilgll~s~~~t~liT~ilK~~vGRpRPdfl~rC~P~~~~~~~~-~~~~iCt~~~~~l~dg~ 178 (333)
T PLN02731 100 VIFIFIYFRRRDVYDLHHAVLGLLYSVLVTAVLTDAIKNAVGRPRPDFFWRCFPDGKALYDS-LGDVICHGDKSVIREGH 178 (333)
T ss_pred HheeeeeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhhcCccccccccc-cccceecCchhcccccC
Confidence 99888888888888888889999999999999999999999999999999999998766554 56779999888889999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 161 KSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 161 ~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
+|||||||+++|++++++++|+.++++.++++++.+|.++.+++++++++||+||++||+|||+||++|+++|+++++++
T Consensus 179 ~SFPSGHSS~sfagl~fLslyL~~kl~~~~~~~~~~rl~l~~lpll~A~lIalSRV~Dy~Hh~sDVlaG~lLG~~iA~~~ 258 (333)
T PLN02731 179 KSFPSGHTSWSFSGLGFLSLYLSGKIQAFDGKGHVAKLCIVILPLLFAALVGISRVDDYWHHWQDVFAGGLLGLAISTIC 258 (333)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888878888999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcchhhhhhhcccCC-CCCCCcccccccccccccccCCCCCCC-CccccccCCCCCCCchhHhhhc
Q 020901 241 YLQFFPPPHYDDGWGPYAYFRAREESHSN-NMGHSRNSVNALEMEIHSVNQRTEPNG-DAFLPVYANSPPSSTLDEMESG 318 (320)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (320)
|+++||++++.++|+|+++|++++|.+.+ ++.+..+.. +++.++.+.++|| .|+++ .|.+...+.||.|+|
T Consensus 259 Y~~yfp~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 331 (333)
T PLN02731 259 YLQFFPPPYHTEGWGPYAYFQVLEAARVQGAANGAVQQP-----PPQVNNGEEEDGGFMGLHL--VDNPTMRREEDVETG 331 (333)
T ss_pred HHHHcCCccccCCCCChHHHHHhhccccCCcCcccccCC-----CcccccccccCCceeEeee--cCCCcccchhhhhcc
Confidence 99999999999999999999999999876 333333333 3444555555577 89998 566688999999999
Q ss_pred CC
Q 020901 319 RR 320 (320)
Q Consensus 319 ~~ 320 (320)
||
T Consensus 332 ~~ 333 (333)
T PLN02731 332 RG 333 (333)
T ss_pred CC
Confidence 97
No 2
>PLN02250 lipid phosphate phosphatase
Probab=100.00 E-value=1.5e-62 Score=456.68 Aligned_cols=290 Identities=69% Similarity=1.235 Sum_probs=268.0
Q ss_pred CCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCccCCCCCCCCCCccchhHHHHHHHHHHH
Q 020901 1 MREIDLGAHTIKSHGARVARNHLHDWIILLLLAVIEVVLYVIHPFYRFVGEDMMTDLKYPFKDNTVPIWAVPMYAVLLPI 80 (320)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~dw~~li~l~~~~~~l~~~~p~~rf~~~d~~~~~~~p~~~~~i~~~~~~~~~~~lp~ 80 (320)
|+|+|+|.||+++|+.+++++++.||+++++++++.++++.++||+|++.+|++++++||++++++|.+.+.++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Dwii~i~l~~i~~i~~~i~Pf~r~~~~~~~~~i~yP~~~~tVp~~~l~ii~~~iP~ 80 (314)
T PLN02250 1 MPEIQLGAHTIRSHGVKVARTHMHDWLILLLLVVIEVVLNVIEPFHRFVGKDMLTDLSYPLQDNTIPFWAVPLIAILLPF 80 (314)
T ss_pred CCcccccccchhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchhhccCCCCCCeecHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999998999999999888887788999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCC
Q 020901 81 AIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGH 160 (320)
Q Consensus 81 ~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~ 160 (320)
++++++++.+++.+++++.+++++++++++.++++++|..+|||||+|+++|+|++...++.+..+..|++++..+++++
T Consensus 81 ~vilv~~~~r~~~~~l~~~~l~ll~sv~~t~lit~~lK~~vGRpRPdfl~rC~P~~~~~~~~~~~~~~Ctg~~~~l~dg~ 160 (314)
T PLN02250 81 AVILVYYFIRRDVYDLHHAILGLLFSVLITGVITDAIKDAVGRPRPDFFWRCFPDGKGVFHPVTTDVLCTGAKSVIKEGH 160 (314)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCChhhhcCccccccccccccceeecCCcccccccC
Confidence 99999998888888999999999999999999999999999999999999999998877777777889999888889999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 161 KSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 161 ~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
+|||||||+.+|++++++++|+.++++.++++++.+|.++.+++++++++||+||++||+|||+||++|+++|+++++++
T Consensus 161 ~SFPSGHSS~afa~~~fLslyL~~kl~~~~~~~~~~r~~l~~lpll~A~lVa~SRI~dy~Hh~sDVlaG~lIG~~~A~~~ 240 (314)
T PLN02250 161 KSFPSGHTSWSFAGLGFLSLYLSGKIRVFDRRGHVAKLCIVFLPLLVAALVGVSRVDDYWHHWQDVFAGALIGLTVASFC 240 (314)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888788888999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcchhhhhhhcccCC-CCCCCcccccccccccccccC
Q 020901 241 YLQFFPPPHYDDGWGPYAYFRAREESHSN-NMGHSRNSVNALEMEIHSVNQ 290 (320)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 290 (320)
|+++||++.++++|+|++||++++|.+.+ ++.+..|+.+.+..|.+....
T Consensus 241 y~~~fp~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (314)
T PLN02250 241 YLQFFPPPYDIDGWGPHAYFQMLAESRNGAQSSNGINHLSVQQTELESVYI 291 (314)
T ss_pred HHHHcCCcccCCCCCcchhHHHhhccccccccccccccccccccccCCcCC
Confidence 99999999999999999999999999877 555555666666666555443
No 3
>PLN02715 lipid phosphate phosphatase
Probab=100.00 E-value=2.2e-60 Score=443.37 Aligned_cols=267 Identities=73% Similarity=1.352 Sum_probs=250.7
Q ss_pred CCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCccCCCCCCCCCCccchhHHHHHHHHHHH
Q 020901 1 MREIDLGAHTIKSHGARVARNHLHDWIILLLLAVIEVVLYVIHPFYRFVGEDMMTDLKYPFKDNTVPIWAVPMYAVLLPI 80 (320)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~dw~~li~l~~~~~~l~~~~p~~rf~~~d~~~~~~~p~~~~~i~~~~~~~~~~~lp~ 80 (320)
|+|+++|.||+++|+.++++.|+.||+++++++++.++++.++||+|++..|++++++||++++++|.+.+.++++++|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~Dwi~~~~l~~i~~~~~~~~Pf~R~~~~~~~~~i~yP~~~~tVp~~~l~vi~~liPi 105 (327)
T PLN02715 26 IQEIDLGVHTIKSHGGRVASKHKHDWIILVILIAIEIGLNLISPFYRYVGKDMMTDLKYPFKDNTVPIWSVPVYAVLLPI 105 (327)
T ss_pred cchhhhcchhHhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCcccchhccCCCCCCcccHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999888776788999999999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCC
Q 020901 81 AIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGH 160 (320)
Q Consensus 81 ~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~ 160 (320)
++++..++++++.++++..+++++++++++.++++++|..+|||||+|+++|+|++...++. ..+.+|++++..+++++
T Consensus 106 i~i~~~~~~r~~~~~~~~~~l~l~~al~~t~lit~~lK~~vGRpRPdfl~rC~Pd~~~~~~~-l~~~iCt~~~~~l~dg~ 184 (327)
T PLN02715 106 ILFVCFYLKRRCVYDLHHSILGLLFAVLITGVITDSIKVATGRPRPNFYWRCFPDGKELYDA-LGGVICHGKAAEVKEGH 184 (327)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhcCccccccccc-cccccccCccccccccC
Confidence 98888888888888989999999999999999999999999999999999999998776665 45678999878889999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 161 KSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 161 ~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
+|||||||+++|++++++++|+.++++.++++++.+|.++.+++++++++||+||++||+||++||++|+++|+++++++
T Consensus 185 ~SFPSGHSS~sfagl~~Lsl~L~~kl~~~~~~~~~~k~~l~~lpll~A~lIalSRv~Dy~Hh~sDVlaG~lLG~~~a~~~ 264 (327)
T PLN02715 185 KSFPSGHTSWSFAGLTFLSLYLSGKIKAFNGEGHVAKLCLVIFPLLAACLVGISRVDDYWHHWQDVFAGALIGILVAAFC 264 (327)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCcchhhhhhhcccC
Q 020901 241 YLQFFPPPHYDDGWGPYAYFRAREESHS 268 (320)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 268 (320)
|+++||++...++|+|+++++++.+.+.
T Consensus 265 y~~~fp~~~~~~~~~p~~~~~~~~~~~~ 292 (327)
T PLN02715 265 YRQFYPNPYHEEGWGPYAYFKAAQERGV 292 (327)
T ss_pred HHHHcCCccccCCCCCcchHHHhhhccC
Confidence 9999999999999999999998888765
No 4
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=100.00 E-value=9.4e-49 Score=363.51 Aligned_cols=257 Identities=40% Similarity=0.654 Sum_probs=231.0
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc-ccccCccCCCCCCCCCC-ccchhHHHHHHHHHHHHHH
Q 020901 7 GAHTIKSHGARVARNHLHDWIILLLLAVIEVVLYVIHPF-YR-FVGEDMMTDLKYPFKDN-TVPIWAVPMYAVLLPIAIF 83 (320)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~dw~~li~l~~~~~~l~~~~p~-~r-f~~~d~~~~~~~p~~~~-~i~~~~~~~~~~~lp~~i~ 83 (320)
+.|.++.+..++...+..|+++++++++..+.+....++ +| |+|.| .+++||++++ +|+.+.+..+++.+|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~l~~~~~~~~rgF~c~D--~si~~Py~~~etI~~~~L~~i~~~~P~~vI 79 (317)
T KOG3030|consen 2 GNRMIKRSNSRRPCRVLVDLLILALLVLLFYVLELTDPFYRRGFFCDD--ESISYPYRENETIPPLLLLAIAVLLPLLVI 79 (317)
T ss_pred CCcccCCccchhhHHHHHHHHHHHHHHHHHHHHHhcccceeeeeecCC--hhhcCcCCCCCccCHHHHHHHHHHhhHHHH
Confidence 567889999999999999999999999999888777766 45 89988 7999999995 9999999999999999998
Q ss_pred HHHHHHhc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCC-----CC
Q 020901 84 LLCYLRRR----------------DVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNY-----GG 142 (320)
Q Consensus 84 ~~~~~~~~----------------~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~-----~~ 142 (320)
++....+. ..+++++.++.+++++++++++++++|..+||+||+|+++|+|++.... +.
T Consensus 80 ~v~e~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lfgl~~t~~~t~~~K~~vGRlRP~Fl~vC~P~~~~~~~~~~~~~ 159 (317)
T KOG3030|consen 80 LVVEFIRACLKSKSTESNICCLNPDVRRLYRFVGVFLFGLAATQLFTDIIKLAVGRLRPHFLDVCQPDGTDGSTCSDSNL 159 (317)
T ss_pred HHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeccccCCccCCCCCccccc
Confidence 88766553 5667888999999999999999999999999999999999999986522 22
Q ss_pred cccceeecC-CCccccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 020901 143 HWGDVVCHG-KDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWH 221 (320)
Q Consensus 143 ~~~~~~C~~-~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H 221 (320)
++++++|+| +++.++++++|||||||+++|++++|+++|+++++.+++ +.+++|.+++++++++|++||+|||.||+|
T Consensus 160 yi~~~~Ctg~~~~~i~e~rkSFPSGHsS~s~y~~~flalyl~~~~~~~~-~~rllr~~l~f~~l~~A~~v~lSRV~DYkH 238 (317)
T KOG3030|consen 160 YIEDFICTGPDPDVVREGRKSFPSGHSSFSFYAMGFLALYLQARLFWFG-RGRLLRPLLQFLPLMLALLVGLSRVSDYKH 238 (317)
T ss_pred ccccceeCCCCHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHeeehhccccc
Confidence 567899999 889999999999999999999999999999999998765 688999999999999999999999999999
Q ss_pred ChhHhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhhhhhhcc
Q 020901 222 HWQDVFAGGMIGLVVATLCYLQFFPPPHYDDGWGPYAYFRAREES 266 (320)
Q Consensus 222 ~~sDVlaG~~iG~~va~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 266 (320)
||+||++|++||+++|+++++.+++...+.+.+.+.+.++..++.
T Consensus 239 HwsDV~aG~liG~~~A~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 283 (317)
T KOG3030|consen 239 HWSDVLAGALIGAFVAYFLYRYVFPNFKDPTSEKPPASLPSRRKL 283 (317)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhcchhhcccccCCCccccccccc
Confidence 999999999999999999999999999998889888776544443
No 5
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=100.00 E-value=2.5e-35 Score=259.28 Aligned_cols=190 Identities=50% Similarity=0.921 Sum_probs=160.2
Q ss_pred CCCCCCCCCC-ccchhHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccccc
Q 020901 55 TDLKYPFKDN-TVPIWAVPMYAVLLPIAIFLLCYLR-RRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRC 132 (320)
Q Consensus 55 ~~~~~p~~~~-~i~~~~~~~~~~~lp~~i~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c 132 (320)
++++||++++ ++|.+.+.++.+.+|+.++++.++. +++.++.+..++.++++++++.++++++|..+||+||+++.+|
T Consensus 1 ~~~~~p~~~~~~i~~~~l~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~ 80 (193)
T cd03390 1 PSISYPFAESETVPTWLLVIISVGIPLLVIILISLFFRRSLWDLHTSLLGLLLSVSLNGVITNVLKNYAGRPRPDFLARC 80 (193)
T ss_pred CCcCCCCCCCcEEcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHh
Confidence 4789999886 9999999999999999888777665 6667777777888899999999999999999999999999999
Q ss_pred CCCCCCCCCCcccceeecC-CCccccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHH
Q 020901 133 FPDGVPNYGGHWGDVVCHG-KDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLV 211 (320)
Q Consensus 133 ~p~~~~~~~~~~~~~~C~~-~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV 211 (320)
+|+...........+.|.+ +.....++++|||||||+.++++++++++++..+.+.++++++.+|..+.+++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SFPSGHas~a~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~v 160 (193)
T cd03390 81 FPDGGTPSDTLVGIDICCTGDPGVLKEGRKSFPSGHSSFAFAGLGFLSLYLAGKLHIFDPRGSSWRLLLALLPLLLAILV 160 (193)
T ss_pred CCCCCcccccccCCCeecCCCHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH
Confidence 9986543322122255654 555667888999999999999999999999988877666666778888888889999999
Q ss_pred HHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHh
Q 020901 212 GVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 212 ~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~ 244 (320)
|+|||++|+||++||++|+++|.++++++|+++
T Consensus 161 ~~SRi~~g~H~~sDVlaG~~lG~~~a~~~~~~~ 193 (193)
T cd03390 161 AVSRTRDYRHHFSDVIAGSLIGLIIAYLSYRQY 193 (193)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHheeEeC
Confidence 999999999999999999999999999988753
No 6
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=99.96 E-value=1.6e-29 Score=213.62 Aligned_cols=139 Identities=37% Similarity=0.598 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCC----ccccee-ecCCCccccCCCCCCCChhHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGG----HWGDVV-CHGKDSEVREGHKSFPSGHTSWSFA 173 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~----~~~~~~-C~~~~~~~~~~~~SFPSGHas~a~a 173 (320)
.+..++++++++.++++++|..+|||||+++++|+|+....... ...+.. |+++++.+.++++||||||++.+++
T Consensus 5 ~~~~~~~~~~~~~l~~~~lK~~igrpRP~fl~~c~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SFPSGHs~~a~~ 84 (150)
T cd03384 5 FVGVFLFGLFATQLLTDLGKYVTGRLRPHFLDVCKPNYTDLTCSLDHQYIADCTCCTGDPDLIREARLSFPSGHASLSMY 84 (150)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhCCCCCChHhhcCCCCCCcccccCccccccceeeCCCHHHHhcCccCCCcHhHHHHHH
Confidence 34567889999999999999999999999999999997643211 112234 4557778899999999999999999
Q ss_pred HHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHH
Q 020901 174 GLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATL 239 (320)
Q Consensus 174 ~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~ 239 (320)
+++++++++..+++. ++.+.+|..+.+++++++++|++|||++|+||++||++|+++|++++++
T Consensus 85 ~~~~l~l~l~~~~~~--~~~~~~~~~~~~~~~~~a~~v~~sRv~~~~H~~sDviaG~~lG~~~~~~ 148 (150)
T cd03384 85 AAVFLALYLQARLKL--RGSRLLRPLLQFLLLALALYVGLSRISDYKHHWSDVLAGALLGSVIALF 148 (150)
T ss_pred HHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhHhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 999999998887664 2445667778888999999999999999999999999999999999975
No 7
>cd03396 PAP2_like_6 PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.90 E-value=3.6e-22 Score=176.26 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHH
Q 020901 94 YDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFA 173 (320)
Q Consensus 94 ~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a 173 (320)
+..+...+.++++++.+.+++.++|..++|+||..+..|..+. .+.+.. .......++++|||||||+.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~v~~~lK~~~~r~RP~~~~~~gg~~--~~~~~~------~~~~~~~~~~~SFPSGHas~af~ 134 (197)
T cd03396 63 RRRRRALLLLILVIGLGLLVVAILKSHWGRPRPWDLTEFGGDA--PYTPLF------SGPSNGCGKGCSFPSGHASAGFA 134 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHhCCCC--CCCccc------ccCCCCCCCCCcCCchhHHHHHH
Confidence 3444456777888888889999999999999999776655332 111100 00112346789999999999998
Q ss_pred HHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHH
Q 020901 174 GLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQ 243 (320)
Q Consensus 174 ~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~ 243 (320)
.+.+..++. ++ +..++.....+.+++++++|+||++.|+||+|||++|+++|++++.++|+.
T Consensus 135 ~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~vg~sRi~~G~Hf~SDvl~g~~ig~~~~~~~~~~ 196 (197)
T cd03396 135 LLALYFLFR-RR-------RPRLARLVLAAGLALGALMGLARMARGAHFLSDVLWSLLLVWLIALLLYRL 196 (197)
T ss_pred HHHHHHHHH-Hh-------cchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 765443322 11 111344455667788999999999999999999999999999999999875
No 8
>cd03382 PAP2_dolichyldiphosphatase PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.
Probab=99.88 E-value=2.5e-21 Score=165.20 Aligned_cols=116 Identities=22% Similarity=0.304 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHH
Q 020901 100 ILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLS 179 (320)
Q Consensus 100 ~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~ 179 (320)
.+.++.+++++.+++.++|..++||||+.... ..+.++||||||++.+++.++++.
T Consensus 44 ~~~~~~~~~~~~~~~~~lK~~~~rpRP~~~~~------------------------~~~~~~SFPSgHa~~~~~~~~~~~ 99 (159)
T cd03382 44 AIYLFIGLLANEALNYVLKRIIKEPRPCSGAY------------------------FVRSGYGMPSSHSQFMGFFAVYLL 99 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCc------------------------CCCCCCCCCchhHHHHHHHHHHHH
Confidence 44556677788888999999999999973210 025678999999999887777766
Q ss_pred HHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHH
Q 020901 180 LYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCY 241 (320)
Q Consensus 180 l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~ 241 (320)
+++..+.+.. .+..++..+.++.+++++++++||+|+|+||++||++|+++|.+++.+++
T Consensus 100 l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~SRvylg~H~~~DVl~G~~lG~~~~~~~~ 159 (159)
T cd03382 100 LFIYLRLGRL--NSLVSRFLLSLGLLLLALLVSYSRVYLGYHTVSQVVVGAIVGILLGILWF 159 (159)
T ss_pred HHHHHHcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 5543332210 01244555566778889999999999999999999999999999998763
No 9
>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.
Probab=99.88 E-value=2.8e-21 Score=169.09 Aligned_cols=116 Identities=28% Similarity=0.357 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFL 178 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l 178 (320)
..+.++.+++.+.+++..+|..++||||.....+... ..+ +....+.++|||||||+.+++.++++
T Consensus 70 ~~~~l~~~~~~~~~i~~~lK~~~~R~RP~~~~~~~~~---~~~-----------~~~~~~~~~SFPSGHa~~a~~~~~~l 135 (186)
T cd03389 70 AGLFLFATVALSGILVNLLKFIIGRARPKLLFDDGLY---GFD-----------PFHADYAFTSFPSGHSATAGAAAAAL 135 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCChhhcCCcc---ccc-----------ccccCCCCCCcCcHHHHHHHHHHHHH
Confidence 4455666777788889999999999999854322111 011 11223677999999999999998888
Q ss_pred HHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHH
Q 020901 179 SLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQ 243 (320)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~ 243 (320)
+++..+ ++ ...+.+++++|+||+|+|+||++||++|+++|++++.+.|++
T Consensus 136 ~~~~~~-----------~~----~~~~~~~~lv~~SRiylg~H~~sDVl~G~~lG~~~~~~~~~~ 185 (186)
T cd03389 136 ALLFPR-----------YR----WAFILLALLIAFSRVIVGAHYPSDVIAGSLLGAVTALALYQR 185 (186)
T ss_pred HHHHHH-----------HH----HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 765422 11 223567889999999999999999999999999999998875
No 10
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=99.88 E-value=1.7e-21 Score=166.24 Aligned_cols=113 Identities=33% Similarity=0.389 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHH
Q 020901 96 LHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGL 175 (320)
Q Consensus 96 ~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~ 175 (320)
.+...+.++.+++++.+++.++|..++||||+... |+. . .......+||||||++.+++++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~---~~~----------~------~~~~~~~~SFPSGHa~~a~a~a 105 (159)
T cd03391 45 GQEVLVNLLLGLLLDIITVAILKALVRRRRPAYNS---PDM----------L------DYVAVDKYSFPSGHASRAAFVA 105 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---Ccc----------c------hhccCCCCCCCchhHHHHHHHH
Confidence 33455667778888888899999999999997431 110 0 0112457899999999999998
Q ss_pred HHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHH
Q 020901 176 GFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATL 239 (320)
Q Consensus 176 ~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~ 239 (320)
.++.++...+ .....+.+.+++++++||||+|+|||+||++|+++|++++.+
T Consensus 106 ~~l~~~~~~~------------~~~~~~~~~~a~~v~~SRvylg~H~psDVlaG~~lG~~~~~~ 157 (159)
T cd03391 106 RFLLNHLVLA------------VPLRVLLVLWATVVGISRVLLGRHHVLDVLAGAFLGYLEALL 157 (159)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHh
Confidence 8877654321 112244567899999999999999999999999999998875
No 11
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.88 E-value=3.1e-21 Score=167.99 Aligned_cols=117 Identities=32% Similarity=0.453 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFL 178 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l 178 (320)
....++.+++++.+++.++|..++||||+....+ .+.++||||||++.+++.+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~------------------------~~~~~sfPSgHa~~~~~~~~~l 118 (182)
T cd03392 63 AALFLLLALLGGGALNTLLKLLVQRPRPPLHLLV------------------------PEGGYSFPSGHAMGATVLYGFL 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC------------------------CCCCCCCCcHHHHHHHHHHHHH
Confidence 3445666777888889999999999999843111 2567899999999999998888
Q ss_pred HHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHh
Q 020901 179 SLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~ 244 (320)
.+++.++.+ ....|..+..+.+++++++|+||+|+|+||++||++|+++|.+++.+++..+
T Consensus 119 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~sRv~lg~H~~sDvl~G~~lG~~~~~~~~~~~ 179 (182)
T cd03392 119 AYLLARRLP-----RRRVRILLLILAAILILLVGLSRLYLGVHYPSDVLAGWLLGLAWLALLILLY 179 (182)
T ss_pred HHHHHHHcc-----hhhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 777665433 1234555556667889999999999999999999999999999999887754
No 12
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=99.87 E-value=2e-21 Score=174.94 Aligned_cols=147 Identities=21% Similarity=0.123 Sum_probs=93.7
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccc--cCCCCCCC-CC-------Ccc-----cceeecC-
Q 020901 88 LRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWR--CFPDGVPN-YG-------GHW-----GDVVCHG- 151 (320)
Q Consensus 88 ~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~--c~p~~~~~-~~-------~~~-----~~~~C~~- 151 (320)
..|.+.+.....++.+.++++++..+++++|..+.||||+..+. |.....+. |. ..+ .+..+..
T Consensus 67 ~~r~~~k~~l~l~~~l~~~i~~~~~~k~~iK~~~~epRP~v~~l~~~~~~~~~~FY~l~~~~r~~~v~~~~~~~~~~~~w 146 (244)
T PRK10699 67 CLRFRLKAALVLFAILAAAILVGQGVKSWIKERVQEPRPFVVWLEKTHHIPVDEFYTLKRAERGELVKEQLAEQSNIPQW 146 (244)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHhcCCCHHHHHccCHHHHHHHHHHHHhccccCCHH
Confidence 33433333333455567788889999999999999999973322 22111100 00 000 0111111
Q ss_pred -CCccccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHH
Q 020901 152 -KDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGG 230 (320)
Q Consensus 152 -~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~ 230 (320)
..+...++++|||||||+++++.+.+...++..+. +.....+.++++.+|++||+|.|+|||+||++|.
T Consensus 147 ~~~hw~~~~gySFPSGHa~~a~~~~l~~~~ll~~~~----------~~~~~~~~~~wa~~v~~SRvyLGvH~psDVlaG~ 216 (244)
T PRK10699 147 LRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRR----------RYKTVALLMLWATGVMGSRLLLGMHWPRDLVVAT 216 (244)
T ss_pred HHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHccCcCHHHHHHHH
Confidence 13445689999999999998765544433332211 1122344567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 020901 231 MIGLVVATLCYLQF 244 (320)
Q Consensus 231 ~iG~~va~~~~~~~ 244 (320)
++|.+++.+++..+
T Consensus 217 llG~~~~~l~~~l~ 230 (244)
T PRK10699 217 LISWLLVTVATWLA 230 (244)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876643
No 13
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=99.87 E-value=5.4e-21 Score=160.52 Aligned_cols=110 Identities=25% Similarity=0.172 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFL 178 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l 178 (320)
.......+++++.+++.++|..++||||.... ++ .. ....+.++||||||++.+++....+
T Consensus 34 ~~~~~~~~~~~~~~i~~~lk~~~~r~RP~~~~---~~-~~---------------~~~~~~~~SFPSgH~~~~~~~~~~l 94 (144)
T cd03385 34 VVLFATIAVAVALLINYIIGLLYFHPRPFVVG---LG-HN---------------LLPHAADSSFPSDHTTLFFSIAFSL 94 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc---cc-cc---------------cccCCCCCCCCcHHHHHHHHHHHHH
Confidence 44555677778888899999999999996211 00 00 0112567999999999998766543
Q ss_pred HHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHH
Q 020901 179 SLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCY 241 (320)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~ 241 (320)
.. ..+ +. ...+.+++++++++||+|.|+|||+||++|+++|.+++.++|
T Consensus 95 ~~--~~~--------~~----~~~~~~~~a~~v~~SRvylg~H~~sDVl~G~~lg~~~~~~~~ 143 (144)
T cd03385 95 LL--RRR--------KW----AGWILLILALLVAWSRIYLGVHYPLDMLGAALVAVLSALLVF 143 (144)
T ss_pred HH--Hhh--------HH----HHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHh
Confidence 32 111 11 123456788999999999999999999999999999998775
No 14
>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family. In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.
Probab=99.87 E-value=2.7e-21 Score=154.37 Aligned_cols=95 Identities=27% Similarity=0.408 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHh
Q 020901 104 LYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLS 183 (320)
Q Consensus 104 ~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~ 183 (320)
+.+++++.+++.++|..++||||+ ..|||||||+.+++.+.++.+...
T Consensus 14 ~~~~~~~~~i~~~lK~~~~r~RP~--------------------------------~~sFPSgHt~~a~a~a~~l~~~~~ 61 (109)
T cd03383 14 FVSLLIVIIVVVILKAYFGRGTPL--------------------------------EGGMPSGHAAIAFSIATAISLITN 61 (109)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC--------------------------------CCCCChHHHHHHHHHHHHHHHHHh
Confidence 456677888999999999999996 138999999999998887764321
Q ss_pred hcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHH
Q 020901 184 GKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQ 243 (320)
Q Consensus 184 ~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~ 243 (320)
+.....+.+++++++|+||+|+|.||++||++|+++|.+++.++|+.
T Consensus 62 -------------~~~~~~~~~~~a~lv~~SRvylg~H~psDVlaG~~lG~~~~~~~~~~ 108 (109)
T cd03383 62 -------------NPIISILSVLLAVMVAHSRVEMKIHTMWEVVVGAILGALITLLIFKI 108 (109)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11123455678999999999999999999999999999999988865
No 15
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.87 E-value=8e-21 Score=164.86 Aligned_cols=112 Identities=34% Similarity=0.349 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHh
Q 020901 104 LYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLS 183 (320)
Q Consensus 104 ~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~ 183 (320)
+...+.+.+++..+|..++||||+... ...... .....+.++|||||||+.+++.+.++.+++.
T Consensus 63 ~~~~~~~~~~~~~lK~~~~r~RP~~~~----~~~~~~------------~~~~~~~~~SFPSgHt~~a~~~~~~l~~~~~ 126 (177)
T cd03395 63 LAVGFADQLASGFLKPLVARLRPCNAL----DGVRLV------------VLGDQGGSYSFASSHAANSFALALFIWLFFR 126 (177)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCc----cccccc------------cccCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 334455667788999999999997320 000000 0012356889999999999998888765443
Q ss_pred hcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHh
Q 020901 184 GKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 184 ~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~ 244 (320)
++ ....+.++++++||+||+|.|+|||+||++|+++|..++.+.+..+
T Consensus 127 ~~-------------~~~~~~~~~~~~v~~SRvylG~H~psDVl~G~~lG~~~~~~~~~~~ 174 (177)
T cd03395 127 RG-------------LFSPVLLLWALLVGYSRVYVGVHYPGDVIAGALIGIISGLLFYLLF 174 (177)
T ss_pred HH-------------HHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1123446778999999999999999999999999999998876654
No 16
>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.
Probab=99.86 E-value=6.4e-21 Score=161.38 Aligned_cols=112 Identities=26% Similarity=0.282 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHH
Q 020901 103 LLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYL 182 (320)
Q Consensus 103 l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l 182 (320)
++.+++++.+++.++|..++||||+.. +...... ...+.++||||||++.+++.+.++.+++
T Consensus 38 ~~~~~~~~~~~~~~lK~~~~r~RP~~~----~~~~~~~--------------~~~~~~~SFPSgH~~~a~~~~~~l~~~~ 99 (151)
T cd03388 38 LVVVLALGMYIGQFIKDLFCLPRPSSP----PVVRLTM--------------SSAALEYGFPSTHAMNATAISFYLLIYL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCC----chhhhhc--------------cccCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 455566777888999999999999731 1000000 0025679999999999999988887765
Q ss_pred hhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHH
Q 020901 183 SGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATL 239 (320)
Q Consensus 183 ~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~ 239 (320)
.++.+. .+.......++++++|++||+|+|+|||+||++|+++|.+++.+
T Consensus 100 ~~~~~~-------~~~~~~~~~~~~~~~v~~SRvylgvH~p~DVl~G~~lG~~~~~~ 149 (151)
T cd03388 100 YDRYQY-------PFVLGLILALFYSTLVCLSRIYMGMHSVLDVIAGSLIGVLILLF 149 (151)
T ss_pred HHhccc-------hHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 543221 23333445567899999999999999999999999999998754
No 17
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.85 E-value=4.2e-21 Score=152.93 Aligned_cols=102 Identities=40% Similarity=0.549 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFL 178 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l 178 (320)
..+.++.+++++.+++..+|..++||||+... +.++||||||++.+++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~---------------------------~~~~sfPSgHa~~a~~~~~~~ 56 (106)
T cd03394 4 GLLILAEAAALTAAVTEGLKFAVGRARPDGSN---------------------------NGYRSFPSGHTASAFAAATFL 56 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---------------------------CCCCccCcHHHHHHHHHHHHH
Confidence 45567788888999999999999999997321 457899999999999888776
Q ss_pred HHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 179 SLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
...... + ......++++.++++||+++|+||++||++|+++|.+++.++
T Consensus 57 ~~~~~~------------~-~~~~~~~~~~~~v~~sRv~~g~H~~sDV~~G~~lG~~~~~~~ 105 (106)
T cd03394 57 QYRYGW------------R-WYGIPAYALASLVGASRVVANRHWLSDVLAGAAIGILVGYLV 105 (106)
T ss_pred HHHHcc------------h-HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHheeee
Confidence 543211 1 112334567889999999999999999999999999998754
No 18
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=99.84 E-value=3.7e-19 Score=153.54 Aligned_cols=110 Identities=23% Similarity=0.209 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFL 178 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l 178 (320)
.+..++.+++.+.+++.++|..+.|+||... .++. ....+.+|||||||+.+++.+.++
T Consensus 78 g~~~l~~al~~~~ll~~~LK~~~~R~~~~~~---r~~~------------------~p~~~~~SFPSGHt~~af~~a~~l 136 (190)
T PRK09597 78 GLFQVANASIATTLLTHTTKRALNHVTINDQ---RLGE------------------RPYGGNFNMPSGHSSMVGLAVAFL 136 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc---cccc------------------CCCCCCCCCCcHHHHHHHHHHHHH
Confidence 5666788999999999999999999887521 0000 012344899999999998766443
Q ss_pred HHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHH
Q 020901 179 SLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQ 243 (320)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~ 243 (320)
.. +.+ ++... ..+.++++||+||||.|+|||+||++|+++|++++.+++..
T Consensus 137 ~~----~~~--------~~~~~--~~l~lallVg~SRVYLGvHyPsDVLaG~liGil~~~lf~~~ 187 (190)
T PRK09597 137 MR----RYS--------FKKYW--WLLPLIPLTMLARIYLDMHTIGAVLAGLGVGMLCVSLFTSP 187 (190)
T ss_pred HH----HHc--------hhHHH--HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 32 111 01111 12345678999999999999999999999999999877654
No 19
>cd03393 PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=99.84 E-value=8.2e-20 Score=149.76 Aligned_cols=109 Identities=30% Similarity=0.316 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHH
Q 020901 101 LGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSL 180 (320)
Q Consensus 101 l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l 180 (320)
..++.+++++.+++.++|..++||||+...... .. ....+.++||||||++.+++.+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~lK~~~~r~RP~~~~~~~----~~--------------~~~~~~~~sFPSgHa~~~~~~~~~~~~ 77 (125)
T cd03393 16 RYLGLALCASGYLNAALKEVFKIPRPFTYDGIQ----AI--------------YEESAGGYGFPSGHAQTSATFWGSLML 77 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCCCcccc----hh--------------ccCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 445667788888999999999999997432110 00 112367799999999999877666544
Q ss_pred HHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 181 YLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 181 ~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
...+ + ....+.+++++++++||+|.|+||++||++|+++|.+++++.
T Consensus 78 ~~~~------------~-~~~~~~~~~~~~v~~sRv~lg~H~~sDVl~G~~lG~~~~~~~ 124 (125)
T cd03393 78 HVRK------------K-WFTLIGVVLVVLISFSRLYLGVHWPSDVIGGVLIGLLVLVLG 124 (125)
T ss_pred HHHH------------H-HHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHh
Confidence 3211 1 122344567889999999999999999999999999998763
No 20
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=99.84 E-value=1.4e-19 Score=160.00 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHH
Q 020901 97 HHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLG 176 (320)
Q Consensus 97 ~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~ 176 (320)
+...+.++.+++++.+++.++|..++||||.... .+. .....+.++||||||++.+++.+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~lk~~~~r~RP~~~~----~~~---------------~~~~~~~~~SFPSgHa~~~~~~a~ 118 (202)
T PRK11837 58 RQLVIKIAIALAISLLVSWTIGHLFPHDRPFVEG----IGY---------------NFLHHAADDSFPSDHGTVIFTFAL 118 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc----ccc---------------ccccCCCCCCCchHHHHHHHHHHH
Confidence 3355556777788888899999999999996210 000 011235678999999998887644
Q ss_pred HHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHH
Q 020901 177 FLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCY 241 (320)
Q Consensus 177 ~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~ 241 (320)
.+.+. .+ + ....+.++++++||+||||.|+|||+||++|+++|.+++.+.-
T Consensus 119 ~~l~~--~~-----------~-~~~~~~~~~a~lva~SRVylGvHypsDVlgG~~lG~~~~~~~~ 169 (202)
T PRK11837 119 AFLFW--HR-----------L-WSGSLLMAIAVAIAWSRVYLGVHWPLDMLGALLVGMIGCLSAQ 169 (202)
T ss_pred HHHHH--HH-----------H-HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 32221 11 0 1223456778999999999999999999999999999998653
No 21
>smart00014 acidPPc Acid phosphatase homologues.
Probab=99.81 E-value=2.3e-19 Score=144.89 Aligned_cols=111 Identities=38% Similarity=0.525 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeec-CCCccccCCCCCCCChhHHHHHHHHHHHHHHHhh
Q 020901 106 AVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCH-GKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSG 184 (320)
Q Consensus 106 ~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~-~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~ 184 (320)
+.+.+.+++.++|..++|+||+.++ ....|. .+.....+.++||||||++.+++.+.++..++..
T Consensus 3 ~~~~~~~~~~~lK~~~~r~RP~~~~--------------~~~~~~~~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~~~~~ 68 (116)
T smart00014 3 LAVVSLLFTGVIKNYFGRPRPFFLD--------------IGDACCTPNFLLTLEAGYSFPSGHTAFAFAFALFLLLYLPA 68 (116)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCccc--------------ccccccCcchhhhcCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999998653 111121 1233445888999999999999999988887765
Q ss_pred cccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHH
Q 020901 185 KIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATL 239 (320)
Q Consensus 185 ~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~ 239 (320)
+.+ +.......+.++.++++||+++|.||++||++|+++|..++.+
T Consensus 69 ~~~---------~~~~~~~~~~~~~~~~~sRi~~g~H~~~Dv~~G~~lG~~v~~~ 114 (116)
T smart00014 69 RAA---------RKLLIILLLLLALVVGFSRVYLGAHWPSDVLAGSLLGILIAAV 114 (116)
T ss_pred Hhh---------hHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 432 2223455678899999999999999999999999999998864
No 22
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=99.80 E-value=1.2e-18 Score=156.78 Aligned_cols=130 Identities=23% Similarity=0.187 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCC-CCccc--ceeecCCCccccCCCCCCCChhHHHHHHHHHHHH
Q 020901 103 LLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNY-GGHWG--DVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLS 179 (320)
Q Consensus 103 l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~-~~~~~--~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~ 179 (320)
++.+..++..++.++|.++.|+||+.... +.+..... .+... +..| +.++||||||++.+++++.++.
T Consensus 20 l~~~~~~~~~ln~vlK~ii~r~RP~~~~~-~~~~~~~~~~p~~~~~~l~c--------~tgysfPSGHam~a~a~~~~l~ 90 (235)
T cd03381 20 LLWVAVIGDWLNLVFKWILFGQRPYWWVH-ETDYYSNSSVPKIEQFPLTC--------ETGPGSPSGHAMGTTAVLLVMV 90 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCchhc-cccccccccccccccccccc--------CCCCCCCcHHHHHHHHHHHHHH
Confidence 34445555568899999999999974211 11100000 01011 1234 7889999999999988877766
Q ss_pred HHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHH
Q 020901 180 LYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYL 242 (320)
Q Consensus 180 l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~ 242 (320)
..+....+. +..++..|..+.++.+++.++||+||||+++|||+||++|+++|++++.++.+
T Consensus 91 ~~l~~~~~~-r~~~~~~~~~~~~~~~~~~~~V~~SRvYLgvHfpsDVlaG~~lGi~~~~~~~~ 152 (235)
T cd03381 91 TALLSHLAG-RKRSRFLRVMLWLVFWGVQLAVCLSRIYLAAHFPHQVIAGVISGIAVAETFSH 152 (235)
T ss_pred HHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 554333221 01123345556666677888999999999999999999999999999987655
No 23
>PLN02525 phosphatidic acid phosphatase family protein
Probab=99.79 E-value=5.8e-18 Score=160.58 Aligned_cols=123 Identities=24% Similarity=0.270 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHH
Q 020901 101 LGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSL 180 (320)
Q Consensus 101 l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l 180 (320)
..++..++.+..+++.+|..+.||||.. .|........ .......++|||||||+.+++.++++.+
T Consensus 38 ~~lv~ll~~~~~l~~~lKd~v~rPRP~~----pp~~ri~~~~----------~~~~~a~eYsFPSgHt~nA~av~~~ll~ 103 (352)
T PLN02525 38 RQMTLLMAFCDYVGNCIKDVVSAPRPSC----PPVRRVTATK----------DEEENAMEYGLPSSHTLNTVCLSGYLLH 103 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcCC----cchhhhhccc----------ccccCCCCCCCChHHHHHHHHHHHHHHH
Confidence 3345556677788899999999999972 1110000000 0112356799999999999999988877
Q ss_pred HHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 181 YLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 181 ~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
++.++.+. .....+.....+.+++++++++||+|.|+|+++||++|+++|++++.+.
T Consensus 104 ~l~~~~~~---~~~~~~~~~~~l~~l~allV~~SRlYLGvH~psDVl~G~~lG~~i~~~~ 160 (352)
T PLN02525 104 YVLSYLQN---VDASVIFAGLALFCLLVALVGFGRLYLGMHSPIDIIAGLAIGLVILAFW 160 (352)
T ss_pred HHHHhccc---cchhHHHHHHHHHHHHHHHHHHHHHheeccCHHHHHHHHHHHHHHHHHH
Confidence 76554321 1122233334456678999999999999999999999999999988764
No 24
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=99.75 E-value=3.3e-19 Score=145.63 Aligned_cols=123 Identities=32% Similarity=0.513 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHH
Q 020901 101 LGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSL 180 (320)
Q Consensus 101 l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l 180 (320)
+.++++++++.+++.++|..++||||++...+.+...... + ....++||||||++.+++.+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~lk~~~~~~rP~~~~~~~~~~~~~~--------~------~~~~~~sfPSgH~~~~~~~~~~l~~ 68 (129)
T PF01569_consen 3 LALLFALILAAILNNVLKWIFGRPRPFFYIPNYGLYPQHW--------P------FQSPFNSFPSGHAAIAAAFAFFLAY 68 (129)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTB--HHHHHHHHHCHHTCH--------H------CHTTS-SSS-HHHHHHHHHHHHHHH
T ss_pred cccccchhhhHHHHHHHHHhhCCCCcCcccccCcccccCc--------c------ccCCCCcCcchhhhhHHHHHhhhhh
Confidence 4567788888888999999999999997654432211100 0 0112679999999999999888877
Q ss_pred HHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhc
Q 020901 181 YLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFF 245 (320)
Q Consensus 181 ~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~ 245 (320)
+...+.+. +.......+.++.+++++|++.|.||++||++|+++|.+++.+.++.+.
T Consensus 69 ~~~~~~~~--------~~~~~~~~~~~~~~v~~srv~~g~H~~~Dvi~G~~lg~~~~~~~~~~~~ 125 (129)
T PF01569_consen 69 YLGSRGWI--------RILLFLLAIVLAFLVALSRVYLGAHFFSDVIAGILLGILIAYLFYRVYK 125 (129)
T ss_dssp HCCCCHHH--------SEEHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHCCHCH
T ss_pred hhhccccc--------cchhhHHHHHHHHHhhcCEEEcCeEehHHHHHHHHHHHHHHHHHHHHhc
Confidence 66543321 0223455677899999999999999999999999999999998776543
No 25
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=99.73 E-value=1.1e-16 Score=128.50 Aligned_cols=113 Identities=45% Similarity=0.663 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHh
Q 020901 104 LYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLS 183 (320)
Q Consensus 104 ~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~ 183 (320)
......+.+++..+|..++++||.....+.... ......+.++||||||++.+++.+.++..+..
T Consensus 9 ~~~~~~~~~~~~~~k~~~~~~rP~~~~~~~~~~---------------~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~ 73 (122)
T cd01610 9 LLALLAGLLLTGVLKYLFGRPRPYFLLRCGPDG---------------DPLLLTEGGYSFPSGHAAFAFALALFLALLLP 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCChHHhcCCcc---------------chhhhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 444455555788999999999998654433221 01123367899999999999999888877654
Q ss_pred hcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 184 GKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 184 ~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
.+. .+.....+.+.++..+++||++.|.||++||++|.++|..++.+.
T Consensus 74 ~~~---------~~~~~~~~~~~~~~~~~~sri~~g~H~~~Dv~~G~~lg~~~~~~~ 121 (122)
T cd01610 74 RRL---------LRLLLGLLLLLLALLVGLSRVYLGVHYPSDVLAGALLGILVALLV 121 (122)
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 321 123344566788999999999999999999999999999998753
No 26
>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]
Probab=99.68 E-value=7.5e-15 Score=129.09 Aligned_cols=121 Identities=31% Similarity=0.399 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHH
Q 020901 100 ILGLLYAVLITGVITDAIKN--ATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGF 177 (320)
Q Consensus 100 ~l~l~~~~~~~~~i~~~lK~--~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~ 177 (320)
.+...............+|. .+.+|||..... ....+.++||||||++.+++.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~sfPSgHt~~~~~~~~~ 150 (232)
T COG0671 93 ALKLLVGLPRPLIVLSALKTWHIFARPRPGLLVA----------------------LVLGASGYSFPSGHAAGAAAAALL 150 (232)
T ss_pred HHHHHHHhHHHHHHHHHHhccccccCCCCcchhc----------------------cccCcccCCCCChhHHHHHHHHHH
Confidence 34445555566677778887 889999974310 122357889999999999998888
Q ss_pred HHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhcCCC
Q 020901 178 LSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFFPPP 248 (320)
Q Consensus 178 l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~p~~ 248 (320)
++++....... . .+.....+.++++.++++||+|.|+||++||++|.++|.+++.+++..+.+..
T Consensus 151 l~~~~~~~~~~-----~-~~~~~~~~~~~~~~lv~~SRv~lGvH~~~DVi~G~~~g~~~~~~~~~~~~~~~ 215 (232)
T COG0671 151 LALLLPLRRAL-----L-RRVLLLILLLLLAALVGLSRVYLGVHYPSDVIGGALLGALAALLLLLLLRPLA 215 (232)
T ss_pred HHHHHHHHHhh-----h-hHHHHHHHHHHHHHHHHHHHHhcccccchHHHhhHHHHHHHHHHHHHHHhccc
Confidence 88776554321 1 45556677788999999999999999999999999999999999988776543
No 27
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=99.66 E-value=1.2e-15 Score=137.88 Aligned_cols=100 Identities=25% Similarity=0.277 Sum_probs=73.5
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCC
Q 020901 112 VITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDG 191 (320)
Q Consensus 112 ~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~ 191 (320)
..+..+|..++|+||+... ....|..........+.||||||++.+++.+.+++.++..+..
T Consensus 115 ~~~~~~K~~~~r~RP~~~~--------------~~~~~~~~~~~~~~~~~SfPSGHa~~a~a~a~~La~~~p~~~~---- 176 (232)
T cd03397 115 SATYPAKKYYNRPRPFVLN--------------DEPICTPPDESGLAKDGSYPSGHTAAGYAWALILAELVPERAD---- 176 (232)
T ss_pred HHHHHHHhhhCCCCCCccC--------------CCCcccccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3378999999999998431 1122332212223667899999999999888888766654311
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 192 RGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 192 ~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
..+.++..+|.|||+.|+||++||++|.++|..+....
T Consensus 177 -----------~l~~~a~~~g~SRv~~GvH~psDV~aG~~lG~~~~a~l 214 (232)
T cd03397 177 -----------EILARGSEYGQSRIVCGVHWPSDVMGGRIMAAALVAAL 214 (232)
T ss_pred -----------HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 12356789999999999999999999999999876543
No 28
>cd03380 PAP2_like_1 PAP2_like_1 proteins, a sub-family of PAP2, containing bacterial acid phosphatase, vanadium chloroperoxidases and vanadium bromoperoxidases.
Probab=99.64 E-value=3.4e-15 Score=132.90 Aligned_cols=112 Identities=29% Similarity=0.258 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHH
Q 020901 100 ILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLS 179 (320)
Q Consensus 100 ~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~ 179 (320)
...+..++.-+.+++..+|..++|+||........ . ..|.. ......+.||||||++.+++.+.++.
T Consensus 95 ~~~l~~a~~da~~~~~~~K~~~~r~RP~~~~~~~~------~-----~~~~~--~~~~~~~~SfPSGHa~~a~a~a~~l~ 161 (209)
T cd03380 95 YALLARALTDAGIATWDAKYHYNRPRPFVAIRLQW------L-----PICTP--EEGTPKHPSYPSGHATFGGAAALVLA 161 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCchhhhccCC------C-----cccCC--CCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 33344455555566889999999999985432100 0 01100 11236788999999999999999888
Q ss_pred HHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHH
Q 020901 180 LYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATL 239 (320)
Q Consensus 180 l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~ 239 (320)
.++..+.. ..+.++..+|.|||+.|.||++||++|..+|..++..
T Consensus 162 ~~~~~~~~---------------~~~~~a~~~~~SRv~~G~H~~sDv~aG~~lG~~i~~~ 206 (209)
T cd03380 162 ELFPERAA---------------ELLARAAEAGNSRVVAGVHWPSDVEAGRILGEAIAAA 206 (209)
T ss_pred HHHHHHHH---------------HHHHHHHHHHHHhhhCCeecHHHHHHHHHHHHHHHHH
Confidence 77654321 1246788999999999999999999999999998754
No 29
>KOG4268 consensus Uncharacterized conserved protein containing PAP2 domain [Function unknown]
Probab=99.62 E-value=3.8e-15 Score=122.72 Aligned_cols=119 Identities=32% Similarity=0.311 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFL 178 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l 178 (320)
.+..+++++..-.+.+.++|.++.|.||..- .|. .. ....-..|||||||++-++.+..+.
T Consensus 65 ~Lv~llLgLlfDli~vaivk~~f~R~rP~~t---~pS----~l------------~~~t~DiYsFPsGHaSRaamv~~~~ 125 (189)
T KOG4268|consen 65 VLVNLLLGLLFDLITVAIVKKLFKRRRPYET---SPS----LL------------DYLTMDIYSFPSGHASRAAMVSKFF 125 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccC---CHH----HH------------HHHhhhhhcCCCcchHHHHHHHHHH
Confidence 5667788888888999999999999999721 000 00 0122456899999999987665443
Q ss_pred HHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhcCC
Q 020901 179 SLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFFPP 247 (320)
Q Consensus 179 ~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~p~ 247 (320)
..-..- ....-.++.++|+..+|+|||..|+||.+||++|++||.+=+.+.-+...+.
T Consensus 126 l~~a~~-----------a~Plyv~l~~~walvvglSRv~lGRHyvtDVlaG~fiGylearl~l~~~~~~ 183 (189)
T KOG4268|consen 126 LSHAVL-----------AVPLYVLLLVLWALVVGLSRVMLGRHYVTDVLAGFFIGYLEARLVLLVWMPS 183 (189)
T ss_pred HHHHHh-----------ccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 221111 1112234567899999999999999999999999999999998887765443
No 30
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=99.53 E-value=5.4e-13 Score=115.28 Aligned_cols=142 Identities=23% Similarity=0.241 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHH---HHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCccccee
Q 020901 72 PMYAVLLPIAIFLL---CYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVV 148 (320)
Q Consensus 72 ~~~~~~lp~~i~~~---~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~ 148 (320)
..+.-+.|.++.+. +.+.||.. ..+..+.+.+....++.++|..+..|||.-. |+
T Consensus 31 la~~sL~p~~V~~~f~S~~l~rrEl-----~a~~~~~G~v~Ne~in~viK~il~qpRP~~~----~~------------- 88 (228)
T KOG3146|consen 31 LAYFSLSPVFVSAGFLSVFLFRREL-----AAIWFVIGQVSNEFINVVIKNILKQPRPVSF----PD------------- 88 (228)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC----Cc-------------
Confidence 34444556555443 33455554 4566788999999999999999999999621 11
Q ss_pred ecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhH
Q 020901 149 CHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFA 228 (320)
Q Consensus 149 C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVla 228 (320)
.....++++||.|+.+...+.++..+.....++.. .......+...+.+.++.+++.||||++.|++++|+.
T Consensus 89 ------~t~~s~yGMPSSHSQfM~Ffs~y~~l~~y~~~~~~--~~s~~~~i~s~~~laLs~~v~~sRVyl~yHt~sQVv~ 160 (228)
T KOG3146|consen 89 ------TTLRSGYGMPSSHSQFMGFFSVYSSLSVYKWLGTN--NFSRFLFIKSGLLLALSFYVCYSRVYLKYHTLSQVVV 160 (228)
T ss_pred ------cccccCCCCCchHHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11245789999999999888887776554443321 0111122334455678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020901 229 GGMIGLVVATLCYLQ 243 (320)
Q Consensus 229 G~~iG~~va~~~~~~ 243 (320)
|+++|.+++.+.|..
T Consensus 161 G~ivG~l~g~~Wf~~ 175 (228)
T KOG3146|consen 161 GAIVGGLVGILWFYL 175 (228)
T ss_pred HHHhhhhHHHHHHHH
Confidence 999999999887654
No 31
>cd03398 PAP2_haloperoxidase PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.
Probab=99.47 E-value=6.6e-13 Score=120.09 Aligned_cols=135 Identities=22% Similarity=0.136 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccccC-CCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHH
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRPNFFWRCF-PDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGF 177 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~c~-p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~ 177 (320)
....+..++.-+.+++...|..+.|+||....... .+++... ..+..|. +......+.||||||++.+++++.+
T Consensus 87 ~~a~l~~a~~da~ia~~~~K~~~~r~RP~~~~~~~~~~~~~~~---~~~~~w~--p~~~~p~~psyPSGHa~~a~a~a~v 161 (232)
T cd03398 87 LFAAVNAAMTDAGIAAWDAKYHYRRWRPVTAIRLADTDGNPAT---EADPYWL--PLAGTPPHPSYPSGHATFAGAAATV 161 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccCHHHHHHhhcccCCCCC---CCCCccc--ccCCCCCCCCCccHHHHHHHHHHHH
Confidence 33434445555557788999999999997532211 1111000 0001111 0112356789999999999999999
Q ss_pred HHHHHhhcccccCCC--------ChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 178 LSLYLSGKIKAFDGR--------GHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 178 l~l~l~~~~~~~~~~--------~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
+..++......+... ....+. ......++..++.||||.|.||++||++|..+|..++..+
T Consensus 162 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~SRvy~GvH~~sDv~~G~~lG~~va~~v 230 (232)
T cd03398 162 LKALFGSDKVPDTVSEPDEGGPSTGVTRV--WAELNELADEVAISRVYAGVHFRSDDAAGAALGEQIGAAA 230 (232)
T ss_pred HHHHhCCCCCCCCccccccCCCCCCCccc--HhHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHH
Confidence 887766532111000 000011 1123456889999999999999999999999999998654
No 32
>cd03386 PAP2_Aur1_like PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
Probab=99.39 E-value=2.3e-11 Score=106.38 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=56.2
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHH
Q 020901 155 EVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGL 234 (320)
Q Consensus 155 ~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~ 234 (320)
.......||||||++.++..+.++.... + + ....+.+++++++++||++.+.||+.||++|+++|+
T Consensus 111 ~~~~~~~~fPS~H~~~a~~~~~~~~~~~-~------------~-~~~~~~~~~~~~i~~s~v~~~~H~~~Dv~~G~~l~~ 176 (186)
T cd03386 111 GFDNPFNAFPSLHVAWAVLAALFLWRHR-R------------R-LLRWLAVLWPLLIWLSTLYLGNHYFIDLVGGIALAL 176 (186)
T ss_pred CCCCCcceeCcHHHHHHHHHHHHHHHHH-H------------H-HHHHHHHHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence 3446778999999999987766554321 1 1 122345667889999999999999999999999999
Q ss_pred HHHHHHHH
Q 020901 235 VVATLCYL 242 (320)
Q Consensus 235 ~va~~~~~ 242 (320)
++..+..+
T Consensus 177 ~~~~~~~~ 184 (186)
T cd03386 177 LSFYLARR 184 (186)
T ss_pred HHHHHhhc
Confidence 88776543
No 33
>COG3907 PAP2 (acid phosphatase) superfamily protein [General function prediction only]
Probab=99.28 E-value=3.3e-10 Score=97.35 Aligned_cols=178 Identities=17% Similarity=0.187 Sum_probs=118.9
Q ss_pred CCCCCCCCCccchhHHHH----HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccc
Q 020901 56 DLKYPFKDNTVPIWAVPM----YAVLLPIAIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPNFFWR 131 (320)
Q Consensus 56 ~~~~p~~~~~i~~~~~~~----~~~~lp~~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~f~~~ 131 (320)
.-.++.+++.+.+....- ..+...+..++....++|..+...+....++.++.++..+..++|...+...|..+.+
T Consensus 61 G~~f~~~h~w~le~l~Hr~~K~l~Ia~~~~~Ll~~gv~~R~gra~~r~~ayvf~~~~L~~s~i~~lKalta~~CPWdLv~ 140 (249)
T COG3907 61 GGQFLLKHHWILEYLIHRVGKWLSIAAGLCLLLGMGVRCRGGRAGCRASAYVFVTLVLSTSLISLLKALTAMDCPWDLVR 140 (249)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecCcccccchhhHHHHHHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 456777766665544332 1222222222222445555555555667778888899999999999999999986654
Q ss_pred cCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHH
Q 020901 132 CFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLV 211 (320)
Q Consensus 132 c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV 211 (320)
.+ +...+.... .+....+..++.||-||++..|+.+.. |+..+ +++++++++++ .+.+..+.+.
T Consensus 141 yG--G~~~~~~L~------~~rpp~~~pGhCfPgGHASsGfa~~aL---fFa~~----~~~Prla~l~l-~~g~~~G~l~ 204 (249)
T COG3907 141 YG--GGFPFIGLF------ESRPPLKAPGHCFPGGHASSGFAWVAL---FFAAW----GVCPRLAWLGL-MIGLVAGLLF 204 (249)
T ss_pred hC--CCCcceEee------cCCCCCCCCCCcCCCCCccccHHHHHH---HHHHc----ccChHHHHHHH-HHHHHHHHHH
Confidence 33 322222211 112334567789999999999876543 22221 33455656555 4457789999
Q ss_pred HHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhcCCCC
Q 020901 212 GVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFFPPPH 249 (320)
Q Consensus 212 ~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~p~~~ 249 (320)
++||+..|+|+.|.-+....+-++++.-.|++++-+++
T Consensus 205 g~sq~lrGAHFLsHnLWs~~~~WLv~Lg~f~l~~~~~~ 242 (249)
T COG3907 205 GISQQLRGAHFLSHNLWSLTICWLVALGFFYLFFVSPT 242 (249)
T ss_pred hHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999998876543
No 34
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=99.17 E-value=1.2e-10 Score=108.99 Aligned_cols=132 Identities=25% Similarity=0.251 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcccccCCCCCCCCCCcccceeecCCCccccCCCCCCCChhHHHHHHHHHHHHHHHh
Q 020901 104 LYAVLITGVITDAIKNATGRPRPNFFWRCFPDGVPNYGGHWGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLGFLSLYLS 183 (320)
Q Consensus 104 ~~~~~~~~~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~~l~l~l~ 183 (320)
....+.+.-+.+.+|+++--|||. |.|-..-... .-.+..|++||-||+.|++...++.+.+.
T Consensus 117 ~~i~~~~~Ylggc~KD~~~lPRP~----sPPvvrltls-------------~~~~~EYG~PStHt~natais~~~~~~ls 179 (407)
T KOG2822|consen 117 TYIWVLVMYLGGCIKDYWCLPRPS----SPPVVRLTLS-------------EDTTKEYGMPSTHTMNATAISFYFFLVLS 179 (407)
T ss_pred HHHHHHHHHHhhhhhheeecCCCC----CCCeEEEEec-------------cchhhhhCCCcchhhhhhHHHHHHHHHHH
Confidence 334455666778899999999996 3332111110 11256799999999999988776533222
Q ss_pred hcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHH--HhcCCCCCCCCCCc
Q 020901 184 GKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYL--QFFPPPHYDDGWGP 256 (320)
Q Consensus 184 ~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~--~~~p~~~~~~~~~~ 256 (320)
.. ++.....+.....+.+++..+++++|||.|+|-.-|+++|.++|+++..+.|. -.++.-...+.|-|
T Consensus 180 -~~---d~~s~p~~~lgl~lv~~y~~lv~lgRiY~GMHgvlDi~sG~ligvl~~~~~~~~~~~~dnf~~s~~~fP 250 (407)
T KOG2822|consen 180 -TM---DRESYPIQYLGLSLVLLYYALVCLGRIYCGMHGVLDIVSGLLIGVLILILRYPFVDFIDNFISSSQWFP 250 (407)
T ss_pred -Hh---chhhhHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhHHHHHHhhhhhhHHHhccchhhcCcccc
Confidence 21 22223335556666778889999999999999999999999999999988665 34455555667766
No 35
>PF14378 PAP2_3: PAP2 superfamily
Probab=98.51 E-value=3.3e-06 Score=73.97 Aligned_cols=68 Identities=28% Similarity=0.299 Sum_probs=48.2
Q ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHH
Q 020901 157 REGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVV 236 (320)
Q Consensus 157 ~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~v 236 (320)
.++...|||.|++.+..++..+. + .+ +.+ ....+.+++.+++.+|-++.+.||.-|+++|++++.++
T Consensus 122 ~~~~~afPSlH~a~a~l~~~~~~----~-~~----~~~----~~~~~~~~~~~~i~~stv~~~~HY~iDv~aG~~la~~~ 188 (191)
T PF14378_consen 122 DNGVAAFPSLHVAWAVLCALALW----R-VG----RPR----WLRALFLAFNVLILFSTVYTGQHYVIDVIAGAALALLA 188 (191)
T ss_pred cccccccCchHHHHHHHHHHHHH----H-cc----ccH----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44556899999999865443222 2 11 111 12234566788999999999999999999999999876
Q ss_pred H
Q 020901 237 A 237 (320)
Q Consensus 237 a 237 (320)
.
T Consensus 189 ~ 189 (191)
T PF14378_consen 189 I 189 (191)
T ss_pred H
Confidence 4
No 36
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.028 Score=46.50 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=23.7
Q ss_pred CCcChhHhhHHHHHHHHHHHHHHHHhc
Q 020901 219 YWHHWQDVFAGGMIGLVVATLCYLQFF 245 (320)
Q Consensus 219 g~H~~sDVlaG~~iG~~va~~~~~~~~ 245 (320)
-.|.|..|++|.++|+++++++|..+.
T Consensus 126 lGH~p~eV~~G~~lGI~i~~i~~~~~~ 152 (153)
T COG1963 126 LGHTPLEVFAGLLLGILIAWIFYAFFM 152 (153)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 369999999999999999999887653
No 37
>PF14360 PAP2_C: PAP2 superfamily C-terminal
Probab=96.71 E-value=0.01 Score=43.98 Aligned_cols=64 Identities=23% Similarity=0.145 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHH
Q 020901 163 FPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVA 237 (320)
Q Consensus 163 FPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va 237 (320)
+-|||++..+....+..-|..++. ...|.+.. +..+..+..=+....||--||+.|..+...+-
T Consensus 6 iFSGHt~~~~l~~l~~~~y~~~~~-------~~~~~~~~----~~~~~~~~~ii~sr~HYTvDV~~a~~it~~~f 69 (74)
T PF14360_consen 6 IFSGHTAFLTLCALFWWEYSPRRF-------WVLKVIMW----LLAIIGSFLIIASRKHYTVDVVLAYYITSLVF 69 (74)
T ss_pred EEchhHHHHHHHHHHHHHHcccch-------hHHHHHHH----HHHHHHHHHHHHcCCCceeehhhHHHHHHHHH
Confidence 469999998877666655543321 11333333 33444444455566999999999998877655
No 38
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=96.26 E-value=0.019 Score=47.72 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=16.4
Q ss_pred CcChhHhhHHHHHHHHHH
Q 020901 220 WHHWQDVFAGGMIGLVVA 237 (320)
Q Consensus 220 ~H~~sDVlaG~~iG~~va 237 (320)
.|.|..|++|+++|+++|
T Consensus 124 GHtp~EV~~G~llGi~vA 141 (141)
T PF02681_consen 124 GHTPLEVFAGALLGIVVA 141 (141)
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 599999999999999875
No 39
>KOG3058 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.37 E-value=32 Score=33.00 Aligned_cols=104 Identities=23% Similarity=0.213 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCCCCCCcccccCCCCCCCCCCc---------------ccceeecCCCccccCCCCCCCChhHHHHHHHHH
Q 020901 112 VITDAIKNATGRPRPNFFWRCFPDGVPNYGGH---------------WGDVVCHGKDSEVREGHKSFPSGHTSWSFAGLG 176 (320)
Q Consensus 112 ~i~~~lK~~~grpRP~f~~~c~p~~~~~~~~~---------------~~~~~C~~~~~~~~~~~~SFPSGHas~a~a~~~ 176 (320)
++--+.=..+.-|=|..--+|.|..+..+... .+...| |. =.=|||+...+..+.
T Consensus 155 ~lR~iTm~vT~LPvP~~h~~C~~k~~~~~~~~~~r~l~~~~~~G~s~~~~~lC---------GD-lmfSGHTlvl~~~~l 224 (351)
T KOG3058|consen 155 LLRCITMYVTQLPVPGQHFRCAPKPNGDLGEFLHRALEIWSGLGLSLFGVRLC---------GD-LMFSGHTLVLTLTAL 224 (351)
T ss_pred HHhhheeEEEecccCCCCcccCCcccccHHHHHHHHHHHHHhcCccccccCcc---------cc-eeeecchHHHHHHHH
Confidence 33333344456678888788888744333210 011124 12 245999999887777
Q ss_pred HHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHH
Q 020901 177 FLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVV 236 (320)
Q Consensus 177 ~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~v 236 (320)
+..-|..+++.. .+++..++ ++.=.+.=+..+.||--||+.++-+.--+
T Consensus 225 ~~~eY~pr~~~~-------L~~i~wll----~~~gi~~il~sr~HYTIDVvvAyyittrv 273 (351)
T KOG3058|consen 225 FITEYSPRRFII-------LHWISWLL----AFVGIFLILASRKHYTIDVVVAYYITTRV 273 (351)
T ss_pred HHHHhcccchhH-------HHHHHHHH----HHHHHHHHHHhCCceeEEEEEehhhHHHH
Confidence 776666554321 11121122 22222333456799999999998884443
No 40
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=84.01 E-value=0.3 Score=45.04 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhc
Q 020901 194 HVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFF 245 (320)
Q Consensus 194 ~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~ 245 (320)
++|.++..+++++++++.-+--|++...|++=.+-=.-+-+++|.++|.++.
T Consensus 135 s~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H 186 (381)
T PF05297_consen 135 SFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVH 186 (381)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666677766777888888876333333334455555555443
No 41
>PF10261 Scs3p: Inositol phospholipid synthesis and fat-storage-inducing TM; InterPro: IPR019388 This entry represents the fat storage-inducing transmembrane (FIT) family of proteins, which play an important role in lipid droplet accumulation. They are endoplasmic reticulum resident membrane proteins that induce lipid droplet accumulation in cell culture and when expressed in mouse liver []; they mediate the partitioning of triglyceride from the ER into cytosolic fatty droplets by an as-yet undetermined mechanism. The FIT family of proteins are not involved in triglyceride biosynthesis []. FIT1 and FIT2 proteins are six-transmembrane-domain containing proteins with both the N and C termini residing in the cytosol. FIT2 is the more anciently conserved homologue of the FIT family; this family of proteins do not share sequence similarity to known proteins or domains.
Probab=81.09 E-value=26 Score=31.79 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHH
Q 020901 207 VASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCY 241 (320)
Q Consensus 207 ~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~ 241 (320)
|.....++=+ +.|.+..=+.|.++|.++.++.|
T Consensus 206 W~~mll~T~i--yFHT~~EKl~Gl~~g~~~~~~~Y 238 (238)
T PF10261_consen 206 WWWMLLMTSI--YFHTILEKLSGLLFGYLGWYITY 238 (238)
T ss_pred HHHHHHHHHH--HHCCHHHHHHHHHHHHHhheeeC
Confidence 3333444444 58999999999999998876544
No 42
>KOG3750 consensus Inositol phospholipid synthesis protein, Scs3p [Lipid transport and metabolism]
Probab=67.56 E-value=1e+02 Score=28.41 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=26.4
Q ss_pred hcCCcChhHhhHHHHHHHHHHHHHHHHhcCC
Q 020901 217 SDYWHHWQDVFAGGMIGLVVATLCYLQFFPP 247 (320)
Q Consensus 217 ~~g~H~~sDVlaG~~iG~~va~~~~~~~~p~ 247 (320)
..+.|-...=+.|++.|++.-++.|+..+|.
T Consensus 218 viYyH~~~ekVig~l~g~l~W~~tY~~~y~~ 248 (270)
T KOG3750|consen 218 VIYYHTLLEKVIGALTGLLTWYFTYRFWYPA 248 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 3468999999999999999999999988773
No 43
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=66.02 E-value=2.3e+02 Score=31.78 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 020901 99 GILGLLYAVLITGVITDAIKNATGRPRP 126 (320)
Q Consensus 99 ~~l~l~~~~~~~~~i~~~lK~~~grpRP 126 (320)
.++.+.+.+.+..++..++|......++
T Consensus 76 ~Aw~~~~~~~~~~~~~~l~~~l~~~~~~ 103 (1094)
T PRK02983 76 AAWWVLLAYLVLAALLNVALLALGVNTA 103 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3444555566666777788877644333
No 44
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=48.51 E-value=1.3e+02 Score=23.66 Aligned_cols=84 Identities=20% Similarity=0.165 Sum_probs=49.6
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHHHhhcccc-cCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHH
Q 020901 155 EVREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKA-FDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIG 233 (320)
Q Consensus 155 ~~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~-~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG 233 (320)
..+|..+|||-|=+-+.+...++..-++.--... |- -=-.|-..+.+.|+.+.+.|+++.+..|+-.++-...+..++
T Consensus 17 ~~de~t~sl~G~v~GF~~~wLAlaiPfl~YG~nTLfF-fLYTWPFFLALmPvsVl~Gi~l~~ll~g~l~~s~~~t~l~V~ 95 (107)
T PF12084_consen 17 EDDEPTWSLPGGVVGFVFWWLALAIPFLVYGSNTLFF-FLYTWPFFLALMPVSVLIGIALSSLLRGKLLWSLLATGLAVG 95 (107)
T ss_pred ccCCCcccccchhHHHHHHHHHHhhHHhhhccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeeehhhHHHHHH
Confidence 3457789999988877776554322111110000 00 000234456677777777888888888877777777777666
Q ss_pred HHHHHH
Q 020901 234 LVVATL 239 (320)
Q Consensus 234 ~~va~~ 239 (320)
.+...+
T Consensus 96 ~lFwll 101 (107)
T PF12084_consen 96 CLFWLL 101 (107)
T ss_pred HHHHHH
Confidence 665544
No 45
>PRK10726 hypothetical protein; Provisional
Probab=47.43 E-value=1.4e+02 Score=23.49 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=49.6
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHHhhcccccCCCCh------hHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHH
Q 020901 156 VREGHKSFPSGHTSWSFAGLGFLSLYLSGKIKAFDGRGH------VAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAG 229 (320)
Q Consensus 156 ~~~~~~SFPSGHas~a~a~~~~l~l~l~~~~~~~~~~~~------~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG 229 (320)
.+|..+|+|-|=+-+.+...++..-++.-. .+. .|-..+++.|+.+-+.|+++....|+--++=...|
T Consensus 15 ~de~s~sl~Gav~GFv~ywlA~aiPfl~YG------~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~~s~l~t~ 88 (105)
T PRK10726 15 DEETTWSLPGAVVGFVSWLLALAIPFLIYG------SNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLLYSILFTL 88 (105)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 356778999988888776555433222110 011 13344566777777778888888888888877777
Q ss_pred HHHHHHHHHH
Q 020901 230 GMIGLVVATL 239 (320)
Q Consensus 230 ~~iG~~va~~ 239 (320)
..++.+...+
T Consensus 89 l~V~~lFwll 98 (105)
T PRK10726 89 LTVGCLFWLL 98 (105)
T ss_pred HHHHHHHHHH
Confidence 7776655543
No 46
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=46.96 E-value=89 Score=31.02 Aligned_cols=24 Identities=25% Similarity=0.485 Sum_probs=16.0
Q ss_pred HhhHHHHHHHHHHHHHHHHhcCCC
Q 020901 225 DVFAGGMIGLVVATLCYLQFFPPP 248 (320)
Q Consensus 225 DVlaG~~iG~~va~~~~~~~~p~~ 248 (320)
-++--+++|..++.++-.++||..
T Consensus 193 ~ll~P~~ig~ai~~~vslliFP~s 216 (459)
T PF10337_consen 193 TLLKPFLIGIAIALVVSLLIFPES 216 (459)
T ss_pred HHHHHHHHHHHHHHHHheeecCCC
Confidence 344556777777777766777753
No 47
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.23 E-value=28 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCC
Q 020901 226 VFAGGMIGLVVATLCYLQFFPPP 248 (320)
Q Consensus 226 VlaG~~iG~~va~~~~~~~~p~~ 248 (320)
+++|+++|+++++++.++..+..
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~ 24 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQ 24 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccch
Confidence 57899999999999988876554
No 48
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.39 E-value=2.5e+02 Score=23.06 Aligned_cols=33 Identities=12% Similarity=0.098 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHhhCCCCCC
Q 020901 95 DLHHGILGLLYAV------LITGVITDAIKNATGRPRPN 127 (320)
Q Consensus 95 ~~~~~~l~l~~~~------~~~~~i~~~lK~~~grpRP~ 127 (320)
..++.++..+-.+ -...-+..++|...-..-|.
T Consensus 49 ~yrr~Al~~L~~l~~~~~~~~~~~l~~LLKr~a~~~~pr 87 (146)
T PF14316_consen 49 RYRREALRELAQLESSDDAEWLAALNELLKRVALQYYPR 87 (146)
T ss_pred HHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHhCCc
Confidence 4455555544333 34446677888876544443
No 49
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=35.36 E-value=3.1e+02 Score=29.50 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhC
Q 020901 106 AVLITGVITDAIKNATG 122 (320)
Q Consensus 106 ~~~~~~~i~~~lK~~~g 122 (320)
+++++.+.-.++..++=
T Consensus 285 ~i~~~~~~p~~vQ~f~V 301 (774)
T PF03699_consen 285 SILLGGIYPALVQQFIV 301 (774)
T ss_pred HHHHHHHHHHHHhheEE
Confidence 34444454555555543
No 50
>COG4042 Predicted membrane protein [Function unknown]
Probab=30.32 E-value=2.2e+02 Score=21.87 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHH--HhcCCCCC
Q 020901 204 PLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYL--QFFPPPHY 250 (320)
Q Consensus 204 ~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~--~~~p~~~~ 250 (320)
|++...+.++++=..|.|-.--...|++.|.+.+.+.-+ ..||.|++
T Consensus 55 PviAlG~tai~i~~~G~~~i~~a~lgavaG~lsA~~taY~ek~FprPe~ 103 (104)
T COG4042 55 PVIALGITAIFINLFGDYIIPLASLGAVAGLLSALLTAYAEKLFPRPEA 103 (104)
T ss_pred cHHHhchHHHhHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 444445566777767887755555677777776665433 46676653
No 51
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=29.49 E-value=3.2e+02 Score=22.43 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 020901 79 PIAIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATGRPRPN 127 (320)
Q Consensus 79 p~~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~grpRP~ 127 (320)
+.+++..+...|++..+.|+......+++....++..+.|...+...++
T Consensus 16 ~~ll~~g~~~Ir~~~~~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f 64 (133)
T PF04238_consen 16 AVLLLIGWYFIRRGRIKLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPF 64 (133)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3344445555566666888887777777777778888999988776664
No 52
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=29.10 E-value=2.6e+02 Score=21.29 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHh
Q 020901 201 VLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 201 ~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~ 244 (320)
.++.+..+.+-.+.-+.+|+-.|.|..+-.++|.++-.++.++.
T Consensus 38 afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 38 AFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999998887776654
No 53
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=29.04 E-value=7.3e+02 Score=26.46 Aligned_cols=9 Identities=0% Similarity=0.010 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 020901 113 ITDAIKNAT 121 (320)
Q Consensus 113 i~~~lK~~~ 121 (320)
....+..++
T Consensus 320 ~~p~~~~i~ 328 (843)
T PF09586_consen 320 FIPPLNSIW 328 (843)
T ss_pred HHHHHHHHH
Confidence 344444443
No 54
>PRK12438 hypothetical protein; Provisional
Probab=28.69 E-value=3.5e+02 Score=29.88 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=7.1
Q ss_pred hhhHHHHHHHHHHH
Q 020901 16 ARVARNHLHDWIIL 29 (320)
Q Consensus 16 ~~~~~~~~~dw~~l 29 (320)
++.++.|+.-++.+
T Consensus 206 s~~ar~hL~vl~~~ 219 (991)
T PRK12438 206 TQAARVQLAVFAGA 219 (991)
T ss_pred CHHHHHHHHHHHHH
Confidence 45556676433333
No 55
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=28.43 E-value=3.2e+02 Score=22.10 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020901 71 VPMYAVLLPIAIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNA 120 (320)
Q Consensus 71 ~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~ 120 (320)
+.-+.++.-+++.+..+++.|++. .+.++.+..+++++...+
T Consensus 76 v~~~i~~Aevi~~~v~y~~TkN~~--------~~~Gf~i~iIft~Vg~~~ 117 (119)
T PF05513_consen 76 VEKWIYLAEVIVGVVMYFKTKNPM--------VFGGFAIVIIFTNVGFSV 117 (119)
T ss_pred HHHHHHHHHHHHHHHHHHhccChH--------HhhhhHHhHhHHHhhhhh
Confidence 333333334445556677777653 234444555555544433
No 56
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=28.31 E-value=3.7e+02 Score=27.94 Aligned_cols=88 Identities=11% Similarity=-0.070 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcccccCCCChhHHHHHHHHHHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhc
Q 020901 166 GHTSWSFAGLGFLSLYLSGKIKAFDGRGHVAKLCIVLLPLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFF 245 (320)
Q Consensus 166 GHas~a~a~~~~l~l~l~~~~~~~~~~~~~~r~~l~~~~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~ 245 (320)
+|...+++...+..+++.++.+ +.-.+.-.....+..+|+...+..+....-.++.-.++-++..+.|..+......
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~l~~a~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~~l~~~~~ 78 (679)
T TIGR02916 2 GYGAAAVAYLFLSLLLVTAWRQ---RLAGGLLLLAAALSAVWALASAALVYMDYPWPLLVLVLEVFRDAAWLAFLLTLLR 78 (679)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred CCCCCCCCCCc
Q 020901 246 PPPHYDDGWGP 256 (320)
Q Consensus 246 p~~~~~~~~~~ 256 (320)
.+...+.+..+
T Consensus 79 ~~~~~~~~~~~ 89 (679)
T TIGR02916 79 RPATSGKPFNQ 89 (679)
T ss_pred ccccccCcccc
No 57
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.34 E-value=75 Score=25.29 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=6.4
Q ss_pred HhhHHHHHHHHHHHH
Q 020901 225 DVFAGGMIGLVVATL 239 (320)
Q Consensus 225 DVlaG~~iG~~va~~ 239 (320)
-.+...+||+..+++
T Consensus 76 glIv~lllGf~AG~l 90 (116)
T COG5336 76 GLIVFLLLGFGAGVL 90 (116)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 58
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=26.63 E-value=74 Score=26.46 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.1
Q ss_pred cCCcChhHhhHHHHHHHHHHHHHHHHh
Q 020901 218 DYWHHWQDVFAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 218 ~g~H~~sDVlaG~~iG~~va~~~~~~~ 244 (320)
...++..|.+.|+++|.++..++..++
T Consensus 84 ~~~~~~~dlL~G~liGff~g~~~~~~L 110 (140)
T PF13373_consen 84 SNSGHNDDLLWGLLIGFFFGLFSLFWL 110 (140)
T ss_pred cccchHHHHHHHHHHHHHHHHHhHHHH
Confidence 356788999999999999999984433
No 59
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.39 E-value=2.1e+02 Score=26.76 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhcCCcChhHhhHHHHHHHHHHHHH
Q 020901 204 PLLVASLVGVSRVSDYWHHWQDVFAGGMIGLVVATLC 240 (320)
Q Consensus 204 ~l~~a~lV~~SRv~~g~H~~sDVlaG~~iG~~va~~~ 240 (320)
.+..+.++.+||....-++-.+|+-..++|++.-+++
T Consensus 171 i~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV 207 (346)
T COG2899 171 IVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLV 207 (346)
T ss_pred HHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHH
Confidence 3456778999999999888888888888887765553
No 60
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.76 E-value=2.4e+02 Score=25.39 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=31.1
Q ss_pred cChhHhhHHHHHHHHHHHHHHHH-hcCCCCCCCCCCcchhhhhhhcccCC
Q 020901 221 HHWQDVFAGGMIGLVVATLCYLQ-FFPPPHYDDGWGPYAYFRAREESHSN 269 (320)
Q Consensus 221 H~~sDVlaG~~iG~~va~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 269 (320)
|++.=++.|.++|++.+.+++-. .-...|...-..|.|-...++.-+..
T Consensus 51 ~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL~~lr~~ 100 (224)
T PF13829_consen 51 SWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVLDNLRRG 100 (224)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhhcCC
Confidence 88888999999999999887642 22333333444455554455554444
No 61
>PRK00068 hypothetical protein; Validated
Probab=23.91 E-value=4.5e+02 Score=29.02 Aligned_cols=11 Identities=36% Similarity=0.444 Sum_probs=5.6
Q ss_pred hhhHHHHHHHH
Q 020901 16 ARVARNHLHDW 26 (320)
Q Consensus 16 ~~~~~~~~~dw 26 (320)
++.++.|+.-.
T Consensus 208 ~~~ar~hl~~l 218 (970)
T PRK00068 208 SRFARKQLAVL 218 (970)
T ss_pred CHHHHHHHHHH
Confidence 44555665433
No 62
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=23.90 E-value=3.3e+02 Score=25.23 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 020901 227 FAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 227 laG~~iG~~va~~~~~~~ 244 (320)
+.-.++.++++++.-..+
T Consensus 84 ~~R~~lAvliaivIs~pl 101 (301)
T PF14362_consen 84 LPRLLLAVLIAIVISEPL 101 (301)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333445555555544433
No 63
>PRK11677 hypothetical protein; Provisional
Probab=23.34 E-value=79 Score=26.13 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHhcCC
Q 020901 225 DVFAGGMIGLVVATLCYLQFFPP 247 (320)
Q Consensus 225 DVlaG~~iG~~va~~~~~~~~p~ 247 (320)
=.++|+++|+++++++.|+.-+.
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccch
Confidence 35688899999998888864333
No 64
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=22.80 E-value=1.9e+02 Score=29.80 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=30.9
Q ss_pred HHHhhcCCcChhHhhHHHHHHHHHHHHHHHHhcCCCCC
Q 020901 213 VSRVSDYWHHWQDVFAGGMIGLVVATLCYLQFFPPPHY 250 (320)
Q Consensus 213 ~SRv~~g~H~~sDVlaG~~iG~~va~~~~~~~~p~~~~ 250 (320)
++...+-..-...++.|.++|.+++.+++....|....
T Consensus 379 fa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~ 416 (650)
T PF04632_consen 379 FATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDG 416 (650)
T ss_pred HcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 66777777788889999999999998888888787654
No 65
>PF02461 AMO: Ammonia monooxygenase; InterPro: IPR003393 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The A subunit from Methylococcus capsulatus str. Bath resides primarily within the membrane and consists of 7 transmembrane helices and a beta-hairpin which interacts with the soluble region of the B subunit. A conserved glutamate residue is thought to contribute to a metal centre [].; PDB: 3CHX_B 3RFR_J 1YEW_J 3RGB_B.
Probab=22.78 E-value=5.9e+02 Score=23.20 Aligned_cols=74 Identities=20% Similarity=0.331 Sum_probs=40.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCccCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 020901 11 IKSHGARVARNHLHDWIILLLLAVIEVVLYVIHPFYRFVGEDMMTDLKYPFKDNTVPIWAVPMYAVLLPIAIFLLCYL 88 (320)
Q Consensus 11 ~~~~~~~~~~~~~~dw~~li~l~~~~~~l~~~~p~~rf~~~d~~~~~~~p~~~~~i~~~~~~~~~~~lp~~i~~~~~~ 88 (320)
.+++.-...-++..|++++.++..+.+.-+.++ +.....| +|..-..||...-....++..+.+|..+=...+-
T Consensus 7 ~~~~~ea~~~~r~~D~~~~~~~~~~~~g~~hih--~mL~~GD--WDFW~DWKDRr~W~tv~PI~~itfpAAvQ~~~W~ 80 (245)
T PF02461_consen 7 VRSRAEAAKVSRTIDILILVILFFVVLGGYHIH--FMLTAGD--WDFWVDWKDRRLWVTVTPIVLITFPAAVQAFLWE 80 (245)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTS--SSSBGGG--SSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhCcHHHhhheehhHHHHHHHHHHHHHHHHHHh--HHhhccC--ccccCcCCCcceeeeeeceEeEeeHHHHHHHHHH
Confidence 455555555567789988877755554433211 1112222 3444445666555556777777777776555443
No 66
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=22.34 E-value=1.1e+02 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=18.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHhcCC
Q 020901 224 QDVFAGGMIGLVVATLCYLQFFPP 247 (320)
Q Consensus 224 sDVlaG~~iG~~va~~~~~~~~p~ 247 (320)
.|.|.|.++|.+++...-.++-|.
T Consensus 5 ~~~l~G~liGgiiGa~aaLL~AP~ 28 (115)
T COG4980 5 KDFLFGILIGGIIGAAAALLFAPK 28 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCc
Confidence 577889999988888877776443
No 67
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.17 E-value=1.5e+02 Score=28.42 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=17.7
Q ss_pred cCCcChhHhhHHHHHHHHHHHHHHHHh
Q 020901 218 DYWHHWQDVFAGGMIGLVVATLCYLQF 244 (320)
Q Consensus 218 ~g~H~~sDVlaG~~iG~~va~~~~~~~ 244 (320)
...|.-.+-+.|.++|++++.+++.++
T Consensus 52 ~s~~~~~~r~~g~~iG~~~a~l~~~l~ 78 (332)
T COG4129 52 RSLKRALQRLLGNALGAILAVLFFLLF 78 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555677777777777777766543
No 68
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.39 E-value=4e+02 Score=20.80 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhcCCcChhH---hhHHHHHHHHHHHHHHH
Q 020901 203 LPLLVASLVGVSRVSDYWHHWQD---VFAGGMIGLVVATLCYL 242 (320)
Q Consensus 203 ~~l~~a~lV~~SRv~~g~H~~sD---VlaG~~iG~~va~~~~~ 242 (320)
+++++++++| |..| .||.++ .+...++|+++++...+
T Consensus 54 ~pil~G~~lG--~WLD-~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 54 IPTLLGVAVG--IWLD-RHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHH--HHHH-hhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 4444 455554 56677778777766443
No 69
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=20.70 E-value=3.1e+02 Score=24.33 Aligned_cols=11 Identities=27% Similarity=0.292 Sum_probs=5.0
Q ss_pred HHHHHHHHhhC
Q 020901 112 VITDAIKNATG 122 (320)
Q Consensus 112 ~i~~~lK~~~g 122 (320)
++....|.-+.
T Consensus 24 ~lC~~~~~~~~ 34 (202)
T PF06365_consen 24 VLCRAFKANFN 34 (202)
T ss_pred HHHHHhcccCC
Confidence 33444454444
No 70
>TIGR02758 TraA_TIGR type IV conjugative transfer system pilin TraA. TraA is the single structural subunit of the pilus found in type IV conjugative transfer systems. This family is generally found in gammaproteobacteria. The pilins show considerable heterogeneity among the different conjugative plasmit types. All of them however contain an N-terminal part which is cleaved off by a leader peptidase (LepB, or similar) to result in a 68-78 amino acid product. Pilins may be further processed by acetylation (in F-like systems by the TraX protein) or by cyclization (in P-like systems by the TraF protein).
Probab=20.36 E-value=2.9e+02 Score=21.30 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 020901 70 AVPMYAVLLPIAIFLLCYLRRRDVYDLHHGILGLLYAVLITGVITDAIKNATG 122 (320)
Q Consensus 70 ~~~~~~~~lp~~i~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~i~~~lK~~~g 122 (320)
.+....++.-++..+..++..|++.. ++.+++...++.++.+.++|
T Consensus 47 tv~~~i~~aev~~~~~~y~~TkN~~~-------~igGf~~~~IF~~Vg~~~vG 92 (93)
T TIGR02758 47 SVEMAMILAGLLVAAVMGFMTKNWFA-------ALGGFAGGSIFWNVGMALVG 92 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHH-------HHhhheeEeehhhhhhhhcc
Confidence 33333333444455566777777531 22245555566666555554
Done!