Query 020902
Match_columns 320
No_of_seqs 142 out of 722
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 100.0 1.9E-62 4E-67 463.8 23.2 299 3-301 1-299 (300)
2 KOG2922 Uncharacterized conser 100.0 4.3E-62 9.2E-67 452.6 14.4 303 2-304 14-316 (335)
3 TIGR03340 phn_DUF6 phosphonate 99.3 6.9E-10 1.5E-14 103.9 21.7 254 10-292 2-281 (281)
4 PRK02971 4-amino-4-deoxy-L-ara 99.2 4.3E-11 9.4E-16 100.2 9.1 116 9-124 2-122 (129)
5 PF06027 DUF914: Eukaryotic pr 99.1 5.7E-08 1.2E-12 93.5 25.4 275 8-302 16-313 (334)
6 PRK11453 O-acetylserine/cystei 99.0 1.1E-07 2.3E-12 89.9 21.2 260 12-297 7-290 (299)
7 PRK15051 4-amino-4-deoxy-L-ara 99.0 5E-09 1.1E-13 85.5 9.6 103 12-123 4-108 (111)
8 PRK15430 putative chlorampheni 98.9 1.7E-07 3.6E-12 88.6 20.6 235 2-269 2-266 (296)
9 TIGR00776 RhaT RhaT L-rhamnose 98.9 7.9E-07 1.7E-11 84.0 23.9 222 52-295 56-289 (290)
10 TIGR00950 2A78 Carboxylate/Ami 98.9 3.9E-07 8.6E-12 83.5 20.9 204 56-289 51-259 (260)
11 PLN00411 nodulin MtN21 family 98.9 3.4E-07 7.3E-12 89.2 21.3 221 65-297 91-331 (358)
12 PRK11272 putative DMT superfam 98.8 5.2E-07 1.1E-11 85.0 19.1 213 57-297 74-288 (292)
13 PRK11689 aromatic amino acid e 98.8 4.8E-06 1E-10 78.6 24.9 210 62-294 71-287 (295)
14 COG2510 Predicted membrane pro 98.8 6E-08 1.3E-12 80.2 10.2 113 11-123 5-138 (140)
15 PF10639 UPF0546: Uncharacteri 98.7 2E-08 4.3E-13 81.9 5.5 103 20-122 7-112 (113)
16 TIGR00817 tpt Tpt phosphate/ph 98.7 1.9E-06 4.1E-11 81.4 19.0 223 56-302 70-301 (302)
17 COG0697 RhaT Permeases of the 98.7 2.2E-05 4.8E-10 72.0 25.6 210 57-295 75-288 (292)
18 PRK10532 threonine and homoser 98.6 6.5E-05 1.4E-09 70.8 25.2 255 8-298 11-285 (293)
19 PF13536 EmrE: Multidrug resis 98.5 6.5E-07 1.4E-11 72.8 7.9 66 58-124 41-106 (113)
20 PTZ00343 triose or hexose phos 98.3 6.5E-05 1.4E-09 72.9 20.1 59 65-123 127-185 (350)
21 PF08449 UAA: UAA transporter 98.3 0.00045 9.7E-09 65.5 24.6 220 60-296 72-299 (303)
22 PRK10452 multidrug efflux syst 98.3 7.6E-06 1.6E-10 67.7 10.2 73 55-127 33-106 (120)
23 PRK09541 emrE multidrug efflux 98.3 5.9E-06 1.3E-10 67.3 9.3 96 15-126 8-105 (110)
24 PF06800 Sugar_transport: Suga 98.2 0.00019 4.1E-09 67.1 18.3 214 53-291 43-268 (269)
25 TIGR00688 rarD rarD protein. T 98.1 0.00022 4.7E-09 65.6 17.8 62 62-123 80-141 (256)
26 PRK10532 threonine and homoser 98.0 2.2E-05 4.8E-10 74.0 9.1 122 7-129 146-286 (293)
27 PF00893 Multi_Drug_Res: Small 98.0 4.2E-05 9.1E-10 60.3 8.6 85 15-115 7-93 (93)
28 PRK13499 rhamnose-proton sympo 98.0 0.00031 6.8E-09 68.0 15.9 288 3-295 1-342 (345)
29 PRK10650 multidrug efflux syst 97.9 0.00012 2.7E-09 59.5 10.5 97 10-122 8-106 (109)
30 PF04142 Nuc_sug_transp: Nucle 97.8 0.0012 2.6E-08 61.1 16.2 69 59-127 24-92 (244)
31 TIGR00950 2A78 Carboxylate/Ami 97.8 0.00021 4.6E-09 65.3 10.8 114 6-119 125-259 (260)
32 PRK11431 multidrug efflux syst 97.7 0.00036 7.9E-09 56.4 9.3 71 52-122 28-100 (105)
33 PLN00411 nodulin MtN21 family 97.7 0.00021 4.5E-09 69.7 9.3 118 7-125 187-329 (358)
34 TIGR03340 phn_DUF6 phosphonate 97.6 0.00014 3E-09 68.1 7.4 113 9-121 144-280 (281)
35 PF00892 EamA: EamA-like trans 97.6 4E-05 8.7E-10 61.4 3.3 67 56-122 58-124 (126)
36 PRK11689 aromatic amino acid e 97.6 0.00043 9.3E-09 65.3 9.6 115 8-123 155-286 (295)
37 COG2076 EmrE Membrane transpor 97.5 0.00077 1.7E-08 54.4 9.2 72 51-122 28-101 (106)
38 PRK11272 putative DMT superfam 97.4 0.00085 1.8E-08 63.2 9.4 116 7-123 148-284 (292)
39 KOG4510 Permease of the drug/m 97.4 0.00035 7.6E-09 64.9 6.1 268 9-299 38-330 (346)
40 PRK15051 4-amino-4-deoxy-L-ara 97.4 0.005 1.1E-07 50.1 12.1 107 176-295 4-110 (111)
41 PRK11453 O-acetylserine/cystei 97.3 0.0016 3.5E-08 61.5 10.3 115 8-122 142-285 (299)
42 COG2510 Predicted membrane pro 97.3 0.0018 4E-08 53.9 9.1 72 215-295 69-140 (140)
43 PRK09541 emrE multidrug efflux 97.2 0.0092 2E-07 48.6 12.0 79 209-296 27-105 (110)
44 PRK10452 multidrug efflux syst 97.1 0.015 3.1E-07 48.2 12.1 68 224-297 39-106 (120)
45 COG2962 RarD Predicted permeas 97.0 0.17 3.6E-06 47.8 19.8 118 6-123 4-143 (293)
46 PRK15430 putative chlorampheni 96.8 0.0067 1.5E-07 57.2 9.5 62 63-124 224-285 (296)
47 COG0697 RhaT Permeases of the 96.8 0.0061 1.3E-07 55.8 8.8 116 8-124 153-287 (292)
48 PRK11431 multidrug efflux syst 96.8 0.028 6E-07 45.4 11.5 78 208-294 25-102 (105)
49 PRK02971 4-amino-4-deoxy-L-ara 96.8 0.021 4.5E-07 47.8 10.8 73 220-298 53-126 (129)
50 KOG2234 Predicted UDP-galactos 96.6 0.42 9.1E-06 46.3 19.7 71 54-124 94-164 (345)
51 COG2076 EmrE Membrane transpor 96.5 0.049 1.1E-06 44.0 11.0 77 209-294 27-103 (106)
52 PRK10650 multidrug efflux syst 96.5 0.06 1.3E-06 43.8 11.2 76 208-292 31-106 (109)
53 PF06027 DUF914: Eukaryotic pr 96.3 0.033 7E-07 54.0 10.3 124 5-131 164-312 (334)
54 PF06800 Sugar_transport: Suga 96.0 0.064 1.4E-06 50.4 10.2 75 225-302 56-130 (269)
55 COG5006 rhtA Threonine/homoser 95.6 0.1 2.2E-06 48.5 9.9 120 7-127 146-285 (292)
56 PF00893 Multi_Drug_Res: Small 95.6 0.11 2.3E-06 40.9 8.6 59 209-270 26-84 (93)
57 KOG2765 Predicted membrane pro 95.6 1.2 2.6E-05 43.6 17.3 60 71-130 178-237 (416)
58 KOG3912 Predicted integral mem 95.4 0.098 2.1E-06 49.3 9.1 72 54-125 88-159 (372)
59 TIGR00776 RhaT RhaT L-rhamnose 95.4 0.029 6.2E-07 53.0 5.8 115 7-123 150-287 (290)
60 PF13536 EmrE: Multidrug resis 95.3 0.31 6.7E-06 39.2 10.7 66 227-300 47-112 (113)
61 KOG1583 UDP-N-acetylglucosamin 95.0 0.49 1.1E-05 44.6 12.2 78 53-130 65-143 (330)
62 TIGR00817 tpt Tpt phosphate/ph 94.9 0.058 1.2E-06 50.8 6.2 117 7-123 143-292 (302)
63 PF03151 TPT: Triose-phosphate 94.8 0.22 4.8E-06 41.6 8.9 113 10-122 1-151 (153)
64 KOG4314 Predicted carbohydrate 94.8 0.9 2E-05 41.0 12.8 100 20-125 12-126 (290)
65 PF00892 EamA: EamA-like trans 93.2 0.25 5.5E-06 39.0 6.0 61 226-293 65-125 (126)
66 KOG1580 UDP-galactose transpor 93.2 4.8 0.0001 37.3 14.6 225 61-307 94-326 (337)
67 KOG4831 Unnamed protein [Funct 92.9 0.15 3.3E-06 41.1 4.0 78 45-123 45-124 (125)
68 COG5006 rhtA Threonine/homoser 92.1 10 0.00023 35.5 18.6 193 70-296 89-287 (292)
69 TIGR00803 nst UDP-galactose tr 91.8 0.63 1.4E-05 41.8 7.2 116 6-121 82-221 (222)
70 KOG1441 Glucose-6-phosphate/ph 91.8 3 6.5E-05 40.2 12.1 63 62-124 93-155 (316)
71 PRK13499 rhamnose-proton sympo 89.3 1.9 4.1E-05 42.1 8.5 62 233-294 91-153 (345)
72 COG1742 Uncharacterized conser 85.7 4.8 0.0001 32.4 7.3 46 82-128 62-107 (109)
73 PF10639 UPF0546: Uncharacteri 85.5 4.1 8.9E-05 33.4 7.1 53 233-291 59-111 (113)
74 COG4975 GlcU Putative glucose 84.0 2.2 4.7E-05 39.8 5.3 221 50-296 54-287 (288)
75 PRK02237 hypothetical protein; 83.4 4.5 9.8E-05 32.8 6.3 44 83-127 64-107 (109)
76 PTZ00343 triose or hexose phos 82.9 2.5 5.4E-05 41.0 5.7 52 71-122 295-346 (350)
77 COG4975 GlcU Putative glucose 81.8 1.3 2.8E-05 41.2 3.0 62 234-297 78-139 (288)
78 PF06379 RhaT: L-rhamnose-prot 81.6 55 0.0012 32.0 19.2 286 3-293 1-339 (344)
79 TIGR00803 nst UDP-galactose tr 80.8 21 0.00046 31.8 10.6 56 228-290 165-220 (222)
80 PF08449 UAA: UAA transporter 76.7 13 0.00027 35.1 8.2 115 8-122 153-295 (303)
81 PF05653 Mg_trans_NIPA: Magnes 76.1 18 0.00038 34.5 9.0 61 234-301 69-129 (300)
82 PF04142 Nuc_sug_transp: Nucle 71.8 22 0.00047 32.8 8.2 86 208-300 10-95 (244)
83 PF02694 UPF0060: Uncharacteri 71.2 4.8 0.0001 32.6 3.2 43 84-127 63-105 (107)
84 PF01306 LacY_symp: LacY proto 69.0 46 0.001 33.3 10.4 76 81-156 143-231 (412)
85 KOG2766 Predicted membrane pro 67.2 2.5 5.5E-05 39.6 1.0 60 70-129 96-155 (336)
86 PF04342 DUF486: Protein of un 65.8 5.5 0.00012 32.2 2.5 36 86-121 70-105 (108)
87 KOG1581 UDP-galactose transpor 64.8 61 0.0013 31.2 9.6 68 62-129 93-160 (327)
88 COG3169 Uncharacterized protei 64.2 6.9 0.00015 31.3 2.7 107 3-122 4-113 (116)
89 KOG2765 Predicted membrane pro 60.9 65 0.0014 32.0 9.2 123 5-127 243-393 (416)
90 PF11970 Git3_C: G protein-cou 55.8 20 0.00044 27.1 4.0 49 241-289 13-61 (76)
91 COG4858 Uncharacterized membra 54.6 1.1E+02 0.0024 27.4 8.9 90 9-108 125-220 (226)
92 PF04657 DUF606: Protein of un 54.4 33 0.00071 28.8 5.5 54 68-121 80-138 (138)
93 KOG1442 GDP-fucose transporter 49.9 11 0.00023 35.9 1.9 58 62-119 112-169 (347)
94 COG2962 RarD Predicted permeas 48.6 1.4E+02 0.003 28.6 9.1 70 209-281 66-135 (293)
95 TIGR00688 rarD rarD protein. T 45.5 91 0.002 28.2 7.4 39 230-269 85-123 (256)
96 PF15048 OSTbeta: Organic solu 44.4 22 0.00047 29.6 2.7 38 258-295 20-57 (125)
97 KOG1580 UDP-galactose transpor 42.5 20 0.00043 33.4 2.5 40 88-127 277-316 (337)
98 KOG1443 Predicted integral mem 40.1 3.6E+02 0.0078 26.2 13.8 59 67-125 99-157 (349)
99 PF06570 DUF1129: Protein of u 39.8 2.1E+02 0.0046 25.4 8.7 56 52-107 143-204 (206)
100 PF06157 DUF973: Protein of un 34.8 3.8E+02 0.0082 25.5 9.8 107 8-118 46-158 (285)
101 PF03151 TPT: Triose-phosphate 34.1 2.5E+02 0.0055 22.7 12.2 72 213-291 79-150 (153)
102 PF06966 DUF1295: Protein of u 34.0 1.7E+02 0.0036 26.7 7.2 59 7-66 121-186 (235)
103 PF04531 Phage_holin_1: Bacter 32.3 2.3E+02 0.005 21.7 7.6 24 47-70 5-28 (84)
104 PF07857 DUF1632: CEO family ( 29.8 1.8E+02 0.0039 27.1 6.7 50 249-299 85-139 (254)
105 PRK06433 NADH dehydrogenase su 29.0 1.9E+02 0.0042 22.4 5.7 40 263-302 47-86 (88)
106 PF11297 DUF3098: Protein of u 28.5 1.3E+02 0.0029 22.4 4.4 26 271-296 4-29 (69)
107 COG5522 Predicted integral mem 27.0 3.1E+02 0.0068 25.0 7.4 49 64-112 102-159 (236)
108 PRK02983 lysS lysyl-tRNA synth 26.2 7.8E+02 0.017 28.0 11.9 25 50-74 73-97 (1094)
109 PF03605 DcuA_DcuB: Anaerobic 25.7 1.8E+02 0.004 28.6 6.2 51 79-129 167-244 (364)
110 KOG2922 Uncharacterized conser 22.7 60 0.0013 31.4 2.2 86 207-303 60-145 (335)
111 COG1113 AnsP Gamma-aminobutyra 22.4 8.5E+02 0.018 24.9 13.0 84 208-299 96-182 (462)
112 KOG2234 Predicted UDP-galactos 21.6 7.4E+02 0.016 24.3 9.4 68 226-300 103-170 (345)
113 COG2034 Predicted membrane pro 21.4 1.5E+02 0.0033 23.0 3.7 30 274-303 11-40 (85)
114 MTH00021 ND6 NADH dehydrogenas 21.3 1.1E+02 0.0024 27.0 3.5 35 257-297 131-167 (188)
115 PF08507 COPI_assoc: COPI asso 21.1 1.5E+02 0.0032 24.6 4.0 28 257-291 75-102 (136)
116 PF00909 Ammonium_transp: Ammo 20.9 6.8E+02 0.015 24.6 9.4 37 231-267 294-330 (399)
117 KOG1441 Glucose-6-phosphate/ph 20.6 80 0.0017 30.5 2.6 117 6-123 160-306 (316)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=1.9e-62 Score=463.78 Aligned_cols=299 Identities=49% Similarity=0.835 Sum_probs=284.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020902 3 ISSDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVT 82 (320)
Q Consensus 3 ~~~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~ 82 (320)
|-+++++|+.+|++||++++.|.++|||+++|+++++.|++.+.++|+|||+||.|+.++++|+++++.||+++|+++||
T Consensus 1 ~~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~ 80 (300)
T PF05653_consen 1 MNTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVA 80 (300)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHH
Confidence 56789999999999999999999999999999887655554456799999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q 020902 83 PLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELWHLATQPGFLVYGGIVLVVVGVLI 162 (320)
Q Consensus 83 pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~~~~~~~~fl~~~~~~~~~~~~l~ 162 (320)
|++++++++|++++++++|||++++|+.|+++++.|.++++.++|++++.+|.+|+++++++|.|+.|+++..++...++
T Consensus 81 Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~ 160 (300)
T PF05653_consen 81 PLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILI 160 (300)
T ss_pred HHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred HhhcccCCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCce
Q 020902 163 FKFVPTHGNSHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTA 242 (320)
Q Consensus 163 ~~~~~r~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~ 242 (320)
++..+|+|+++.+.|.++|+++|+++++++|++++.++++++|++|+.+|.+|++++.++.+++.|++|+|+||++||++
T Consensus 161 ~~~~~r~g~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~ 240 (300)
T PF05653_consen 161 FFIKPRYGRRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTS 240 (300)
T ss_pred HhhcchhcccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 77888889999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred eechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 020902 243 VISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDS 301 (320)
Q Consensus 243 ~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~ 301 (320)
.++|++|++||++++++|+++|+|+.+++++++.++.+|+++++.||++|+++||.+++
T Consensus 241 ~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~~ 299 (300)
T PF05653_consen 241 LVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEIS 299 (300)
T ss_pred EEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhcc
Confidence 99999999999999999999999999999999999999999999999999999998764
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.3e-62 Score=452.64 Aligned_cols=303 Identities=66% Similarity=1.117 Sum_probs=293.2
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 020902 2 GISSDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANFAAYAFAPAILV 81 (320)
Q Consensus 2 ~~~~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv 81 (320)
.|++++++|+++|+.|+++++.+.++|||+++|....+.|++.+..+|++.|.||.|++.|.+|+++|+.||+|+|+++|
T Consensus 14 ~~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLV 93 (335)
T KOG2922|consen 14 RMSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLV 93 (335)
T ss_pred hhccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhh
Confidence 58999999999999999999999999999999988877777777889999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 020902 82 TPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELWHLATQPGFLVYGGIVLVVVGVL 161 (320)
Q Consensus 82 ~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~~~~~~~~fl~~~~~~~~~~~~l 161 (320)
+||+++++++++++++++||||++..+.+|+.++++|.++++.++|++++..|++|+++++++|.|+.|+.+.+++.+++
T Consensus 94 tPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il 173 (335)
T KOG2922|consen 94 TPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIVLIL 173 (335)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHhhcccCCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCc
Q 020902 162 IFKFVPTHGNSHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNT 241 (320)
Q Consensus 162 ~~~~~~r~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a 241 (320)
++++.||+|++++++|..+|+++|++|+++.|+++++++++++|.+|+.+|++|.++..++.|+..|+.|+||||+.||+
T Consensus 174 ~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fnt 253 (335)
T KOG2922|consen 174 IFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNT 253 (335)
T ss_pred heeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCC
Q 020902 242 AVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDSPSS 304 (320)
Q Consensus 242 ~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~~~ 304 (320)
+++.|++|++||+.++++|.++|+||++.+..+..++++|+..++.|+++|.+.||.+++-++
T Consensus 254 slV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~~~s 316 (335)
T KOG2922|consen 254 SIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEISLAS 316 (335)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeeccccccccc
Confidence 999999999999999999999999999999999999999999999999999999998865444
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.29 E-value=6.9e-10 Score=103.90 Aligned_cols=254 Identities=19% Similarity=0.176 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCC-C-----------C----ccCCCccccccchhH---HHHHHHHHHHHHHHH
Q 020902 10 GFVLAVSSSIFIGSSFIIKKKGLKKAGTT-G-----------T----RAGSGGYSYLYEPWW---WAGMITMIVGEIANF 70 (320)
Q Consensus 10 Gv~lal~~a~~~a~g~vlqk~~~~~~~~~-~-----------~----~~~~~~~~~~~~p~w---~~G~~l~~~g~~~~~ 70 (320)
...+.+.++++.+..+.+.|+...+++.- . + +.....++..++..| ..+.........+..
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999765543321 0 0 000000111112222 122333456677888
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHHHHhcCchhHHH
Q 020902 71 AAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELWHLATQPGFLVY 150 (320)
Q Consensus 71 ~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~~~~~~~~fl~~ 150 (320)
.++...|.+.++|+...+.+++.+++++++|||+++++|.|..++..|+.++.. ++.++ .+ +.-..+
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~--~~~~~-~~----------~~g~~~ 148 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL--SRFAQ-HR----------RKAYAW 148 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--ccccc-cc----------hhHHHH
Confidence 899999999999999999999999999999999999999999999999887643 22211 11 111112
Q ss_pred HHHHHHHHHHHHHhh-cccCCCc-h----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchh-hHHHHHHHHHHH
Q 020902 151 GGIVLVVVGVLIFKF-VPTHGNS-H----LIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVY-YQTWIFTVVVIF 223 (320)
Q Consensus 151 ~~~~~~~~~~l~~~~-~~r~~~~-~----~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~-~~~yl~~~~~v~ 223 (320)
.....+. ...+.. .+|..++ + ...+.....++++.-.. .....+ ++...... +..+..+.....
T Consensus 149 ~l~aal~--~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 149 ALAAALG--TAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFL----LLYLKR---HGRSMFPYARQILPSATLGGL 219 (281)
T ss_pred HHHHHHH--HHHhhhhccccccchhcccccHHHHHHHHHHHHHHHH----HHHHHH---hccchhhhHHHHHHHHHHHHH
Confidence 1211111 111222 2222111 1 11111111111111000 000000 11111112 222222333333
Q ss_pred HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 020902 224 TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLL 292 (320)
Q Consensus 224 ~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL 292 (320)
.........++++++.|++.+.+..+. .++++++.|..+++|..+. ....|..+++.|++++
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l-~pv~a~l~g~~~lgE~~~~------~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNT-SIVFAVVLGIWFLNERWYL------TRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeeccc-HHHHHHHHHHHHhCCCccH------HHHHHHHHHHHhHHhC
Confidence 344455677899999999999988776 5899999999999998653 3456777788888764
No 4
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.23 E-value=4.3e-11 Score=100.16 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccC-CCccccccch--hHHHHHHHHHHHHHHHHHHHhhcchhhhhcch
Q 020902 9 HGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAG-SGGYSYLYEP--WWWAGMITMIVGEIANFAAYAFAPAILVTPLG 85 (320)
Q Consensus 9 iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~-~~~~~~~~~p--~w~~G~~l~~~g~~~~~~al~~~p~slv~pl~ 85 (320)
+|.++.+.+.++.+.||.+.|+|+++.++.+.... ........+| .-+.|+.++++++.+|..+++..|++...|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 36788899999999999999999888664221100 0011234567 77899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--HhcccccccchhhHHHHhhhheeeEE
Q 020902 86 ALSIIFSAVLAHF--ILREKLHIFGMLGCALCVVGSVSIVL 124 (320)
Q Consensus 86 ~~~lv~~~~la~~--~l~e~~~~~~~~g~~li~~G~~~~~~ 124 (320)
+..+++..+.+.. ++||++|.++++|+++|+.|+.++..
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999888888885 89999999999999999999988754
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.11 E-value=5.7e-08 Score=93.52 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCC------------C----CccC-CCccccccchhHHHHH--HHHHHHHHH
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTT------------G----TRAG-SGGYSYLYEPWWWAGM--ITMIVGEIA 68 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~------------~----~~~~-~~~~~~~~~p~w~~G~--~l~~~g~~~ 68 (320)
.+|=++|++-+......+-+.+++....-.. . .|.+ ....+..++|+|.-=+ ++++.+.-+
T Consensus 16 ~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~ 95 (334)
T PF06027_consen 16 LLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYL 95 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666643311000 0 0111 1223445566664333 347889999
Q ss_pred HHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccC-CHHHHHHHhcCchh
Q 020902 69 NFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIH-SVKELWHLATQPGF 147 (320)
Q Consensus 69 ~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~-t~~el~~~~~~~~f 147 (320)
...||.+.+++-+|=+.+.+++++++++.++||||.++.+++|+++++.|+++++......++.. +.+ ++ .
T Consensus 96 ~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~-------~~-i 167 (334)
T PF06027_consen 96 VVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGS-------NP-I 167 (334)
T ss_pred HHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCC-------cc-c
Confidence 99999999999999999999999999999999999999999999999999888766532221111 111 11 1
Q ss_pred HHHHHHHHHHHHHHHHhh-ccc-CCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccc-hhhHHHHHHHHHHHH
Q 020902 148 LVYGGIVLVVVGVLIFKF-VPT-HGNSHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQF-VYYQTWIFTVVVIFT 224 (320)
Q Consensus 148 l~~~~~~~~~~~~l~~~~-~~r-~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~-~~~~~yl~~~~~v~~ 224 (320)
+.=+.+.....+-..+-+ .++ -++.....+.+--|++|..-.. ..... ++ .++...+ -++....+.+....+
T Consensus 168 ~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~-iq~~i--le--~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 168 LGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISG-IQLAI--LE--RSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH-HHHHh--ee--hhhhhccCCChhhHHHHHHHHHH
Confidence 100111111111111111 111 1122233444444444432111 11111 11 0111111 123333333333222
Q ss_pred HHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 020902 225 CLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDSP 302 (320)
Q Consensus 225 ~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~ 302 (320)
...=-....-.++..+|+.+.- ---..+.-+++.|+.+|+|..+ ..+..|+++++.|.++....+++.+|+
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nL-sLLTsd~~ali~~i~~f~~~~~------~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNL-SLLTSDFYALIIDIFFFGYKFS------WLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHHHHHHHHHHhCccceeeh-HHHHhhHHHHHHHHHhcCcccc------HHHHHHHHHHHHHhheEEccCCccccc
Confidence 2222223355677777764443 3344455688999999998642 247788899999999987665544433
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.98 E-value=1.1e-07 Score=89.94 Aligned_cols=260 Identities=15% Similarity=0.165 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCC---CCccC---CC---ccccccch-hHHH--HHHHHHHHHHHHHHHHhh-cch
Q 020902 12 VLAVSSSIFIGSSFIIKKKGLKKAGTT---GTRAG---SG---GYSYLYEP-WWWA--GMITMIVGEIANFAAYAF-APA 78 (320)
Q Consensus 12 ~lal~~a~~~a~g~vlqk~~~~~~~~~---~~~~~---~~---~~~~~~~p-~w~~--G~~l~~~g~~~~~~al~~-~p~ 78 (320)
++++.++++-+.....-|.+..+.+.. ..|-. .. ....-|++ +.+. |+........+.+.++.. .|.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a 86 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMPA 86 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 456777888888888888765433211 01100 00 00000111 1122 222223333455566666 577
Q ss_pred hhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHHHHhcCchhHHHHHHHHHHH
Q 020902 79 ILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELWHLATQPGFLVYGGIVLVVV 158 (320)
Q Consensus 79 slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~~~~~~~~fl~~~~~~~~~~ 158 (320)
+...-+..+.-+++.+++++++|||+++++++|.++...|+.++... ..++...+ ..-..+.....+..
T Consensus 87 ~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~-~~~~~~~~----------~~G~~l~l~aal~~ 155 (299)
T PRK11453 87 GLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED-SLNGQHVA----------MLGFMLTLAAAFSW 155 (299)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc-cCCCcchh----------HHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999998876531 11111111 00111111111111
Q ss_pred HHHHHhhcccCCC----chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCc------cchhhHHHHHHH-HHHHHHHH
Q 020902 159 GVLIFKFVPTHGN----SHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHN------QFVYYQTWIFTV-VVIFTCLL 227 (320)
Q Consensus 159 ~~l~~~~~~r~~~----~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~------~~~~~~~yl~~~-~~v~~~l~ 227 (320)
..- ....+|..+ .....+......++..-.. ..+. . .++.+ ...++..|..++ ..+.+...
T Consensus 156 a~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~ 227 (299)
T PRK11453 156 ACG-NIFNKKIMSHSTRPAVMSLVVWSALIPIIPFF---VASL-I---LDGSATMIHSLVTIDMTTILSLMYLAFVATIV 227 (299)
T ss_pred HHH-HHHHHHHhcccCccchhHHHHHHHHHHHHHHH---HHHH-H---hcCchhhhhhhccCCHHHHHHHHHHHHHHHHH
Confidence 110 112222111 1111122222222211100 0000 0 01110 112334444333 44556677
Q ss_pred HHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCC
Q 020902 228 QINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKD 297 (320)
Q Consensus 228 Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~ 297 (320)
+....++++++.++..+.++ ....|+++++.|.+++||.... ....|..++++|+++....+.
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~-~~l~Pv~a~~~~~l~lgE~~~~------~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPL-SLLVPVVGLASAALLLDERLTG------LQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhCCCccH------HHHHHHHHHHHHHHHHhcchh
Confidence 77888999999998877764 5688999999999999998652 245777888888887665443
No 7
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.95 E-value=5e-09 Score=85.47 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHH--HHHHHHHHHHHHHHhhcchhhhhcchhhHH
Q 020902 12 VLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGM--ITMIVGEIANFAAYAFAPAILVTPLGALSI 89 (320)
Q Consensus 12 ~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~--~l~~~g~~~~~~al~~~p~slv~pl~~~~l 89 (320)
+.-+++.++-..|+.+.|++.++.+.. +...++..+.+. ..+.+++.++..+++..|++...|+.++++
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~~~~~~---------~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~ 74 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATRPVAIG---------KRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF 74 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 345667778888999999985433211 011123334444 557889999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 90 IFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 90 v~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
+++.+++++++|||++.++++|+.+++.|++++.
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999987664
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.93 E-value=1.7e-07 Score=88.57 Aligned_cols=235 Identities=10% Similarity=0.046 Sum_probs=134.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---Cc--------------cC--CCccccccchhH----HHH
Q 020902 2 GISSDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTG---TR--------------AG--SGGYSYLYEPWW----WAG 58 (320)
Q Consensus 2 ~~~~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~---~~--------------~~--~~~~~~~~~p~w----~~G 58 (320)
-|+ +...|.++++.++++.+.....-|.. .+.+... .| .+ ...++..+++++ ..|
T Consensus 2 ~~~-~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (296)
T PRK15430 2 DAK-QTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVS 79 (296)
T ss_pred Cch-hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHH
Confidence 344 66689999999999998888888753 2211100 00 00 000001122332 245
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHH
Q 020902 59 MITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKEL 138 (320)
Q Consensus 59 ~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el 138 (320)
.....+...+.+.++...|.+...-+....-++..+++++++|||+++++|.|.++...|++++.. +.++ .
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~--~~~~-~------ 150 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW--TFGS-L------ 150 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HcCC-c------
Confidence 555677888999999999999999999999999999999999999999999999999999887642 2111 0
Q ss_pred HHHhcCchhHHHHHHHHHHHHHHHHh-hcccCCCch-H-HHHHH-HHHhhhHHHHHHHHHHHHHHHHHhcCCcc--chhh
Q 020902 139 WHLATQPGFLVYGGIVLVVVGVLIFK-FVPTHGNSH-L-IVYVG-ICSAMGSITVMSVKALGIALKLSFSGHNQ--FVYY 212 (320)
Q Consensus 139 ~~~~~~~~fl~~~~~~~~~~~~l~~~-~~~r~~~~~-~-~~~~~-~~gllg~~s~l~~K~v~~~l~~~~~g~~~--~~~~ 212 (320)
+ .+.... ......+. ..+|..+++ . ..... ....++... .+.....+... ...+
T Consensus 151 ------~---~~~l~a--a~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 210 (296)
T PRK15430 151 ------P---IIALGL--AFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY---------LFAIADSSTSHMGQNPM 210 (296)
T ss_pred ------c---HHHHHH--HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH---------HHHHccCCcccccCCcH
Confidence 0 011111 11111122 223322111 1 11110 000111000 00000111111 1112
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCC
Q 020902 213 QTWIFTV-VVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDS 269 (320)
Q Consensus 213 ~~yl~~~-~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~ 269 (320)
..+.... ..+.+.+ -..+.++++++.|++.+.+.. -..++.+++.|..+++|..+
T Consensus 211 ~~~~~~~~~g~~t~i-~~~~~~~a~~~~~a~~~s~~~-~l~Pv~a~~~g~l~l~E~~~ 266 (296)
T PRK15430 211 SLNLLLIAAGIVTTV-PLLCFTAAATRLRLSTLGFFQ-YIGPTLMFLLAVTFYGEKPG 266 (296)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHcCCCC
Confidence 2222222 2333444 445889999999988666654 57889999999999999865
No 9
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.90 E-value=7.9e-07 Score=84.04 Aligned_cols=222 Identities=9% Similarity=0.117 Sum_probs=138.5
Q ss_pred chhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcchh-hHHHHHHHHHHHHhcccccccc----hhhHHHHhhhheeeE
Q 020902 52 EPWWWAGMIT---MIVGEIANFAAYAFAPAILVTPLGA-LSIIFSAVLAHFILREKLHIFG----MLGCALCVVGSVSIV 123 (320)
Q Consensus 52 ~p~w~~G~~l---~~~g~~~~~~al~~~p~slv~pl~~-~~lv~~~~la~~~l~e~~~~~~----~~g~~li~~G~~~~~ 123 (320)
...|..|+.. ...|.+..+.|.+...+++..|+.. ..++++.+.+.+++|||.++++ ++|.++++.|+.++.
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 3445557765 7889999999999999999999999 9999999999999999999999 899999999988875
Q ss_pred EecCCCcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhccc---CCCchHHHHHHHHHhh-hHHHHHHHHHHHHHH
Q 020902 124 LHAPHERTIHSVKELWHLATQPGFLVYGGIVLVVVGVLIFKFVPT---HGNSHLIVYVGICSAM-GSITVMSVKALGIAL 199 (320)
Q Consensus 124 ~~~~~~~~~~t~~el~~~~~~~~fl~~~~~~~~~~~~l~~~~~~r---~~~~~~~~~~~~~gll-g~~s~l~~K~v~~~l 199 (320)
...+++.+ .+|. ...+.-+.+..+..+.. ..+..-+| ++.... .+.-..|.+ ++.... ..- .
T Consensus 136 ~~~~~~~~---~~~~---~~~~~Gi~~~l~sg~~y--~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~-~~~---~- 201 (290)
T TIGR00776 136 RSKDKSAG---IKSE---FNFKKGILLLLMSTIGY--LVYVVVAKAFGVDGLSV-LLPQAIGMVIGGIIFN-LGH---I- 201 (290)
T ss_pred eccccccc---cccc---cchhhHHHHHHHHHHHH--HHHHHHHHHcCCCccee-hhHHHHHHHHHHHHHH-HHH---h-
Confidence 54322211 0010 00122333333222211 11222222 111111 111222322 322211 111 0
Q ss_pred HHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHH
Q 020902 200 KLSFSGHNQFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTEL 279 (320)
Q Consensus 200 ~~~~~g~~~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~ 279 (320)
+ . ..+.....|......+.. ..+..+...++++.......+.....+++++.+.|+.+++|..+ +.++....
T Consensus 202 ~---~--~~~~~~~~~~~~~~Gi~~-~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~--~~~~~~~~ 273 (290)
T TIGR00776 202 L---A--KPLKKYAILLNILPGLMW-GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKT--KREMIAIS 273 (290)
T ss_pred c---c--cchHHHHHHHHHHHHHHH-HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCC--cceeehhH
Confidence 1 1 112222333333333333 55666667788845445567777778899999999999999875 66888899
Q ss_pred HHHHHHHHHHhhhccC
Q 020902 280 CGFVTILSGTFLLHKT 295 (320)
Q Consensus 280 ~G~~l~i~Gv~lLs~~ 295 (320)
+|.++++.|+++++-.
T Consensus 274 iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 274 VGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988654
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.89 E-value=3.9e-07 Score=83.46 Aligned_cols=204 Identities=17% Similarity=0.164 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCH
Q 020902 56 WAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSV 135 (320)
Q Consensus 56 ~~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~ 135 (320)
..|.....+...+.+.++...|.+...++..+.-+++.+++.+++|||++++++.|+.+.+.|+.++...+ +.+. +
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~-~- 126 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSI-N- 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccc-c-
Confidence 45556677888899999999999999999999999999999999999999999999999999988775322 1111 1
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhhccc----CCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchh
Q 020902 136 KELWHLATQPGFLVYGGIVLVVVGVLIFKFVPT----HGNSHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVY 211 (320)
Q Consensus 136 ~el~~~~~~~~fl~~~~~~~~~~~~l~~~~~~r----~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~ 211 (320)
..-..+.....+....- ....++ .+......+. .....++.. +..-. ...+.....+
T Consensus 127 ---------~~G~~~~l~a~~~~a~~-~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~-l~~~~-------~~~~~~~~~~ 187 (260)
T TIGR00950 127 ---------PAGLLLGLGSGISFALG-TVLYKRLVKKEGPELLQFTG-WVLLLGALL-LLPFA-------WFLGPNPQAL 187 (260)
T ss_pred ---------HHHHHHHHHHHHHHHHH-HHHHhHHhhcCCchHHHHHH-HHHHHHHHH-HHHHH-------HhcCCCCCcc
Confidence 11111111111111110 111222 1111112221 111112111 10000 0112111123
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHH
Q 020902 212 YQTWIFTV-VVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGT 289 (320)
Q Consensus 212 ~~~yl~~~-~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv 289 (320)
+..|..+. ..+.+........++++++.+++.+..+. ...++.+.+.+.++++|..+ +. ...|..+++.|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~-~~~pv~~~ll~~~~~~E~~~--~~----~~~G~~li~~g~ 259 (260)
T TIGR00950 188 SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILA-LAEPLVALLLGLLILGETLS--LP----QLIGGALIIAAV 259 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHHHHHHhCCCCC--HH----HHHHHHHHHHhc
Confidence 44443222 33333334445558899998887666665 48889999999999999654 33 445666666664
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.88 E-value=3.4e-07 Score=89.21 Aligned_cols=221 Identities=11% Similarity=0.145 Sum_probs=116.9
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHH------hcccccccchhhHHHHhhhheeeEEecCCCc------cc
Q 020902 65 GEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFI------LREKLHIFGMLGCALCVVGSVSIVLHAPHER------TI 132 (320)
Q Consensus 65 g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~------l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~------~~ 132 (320)
...+...++.+.|.+...-+..+.-+++.++++++ +|||+++++++|+++...|+.++...+.+.. ..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 33467788999999999999999999999999999 6999999999999999999876643221100 00
Q ss_pred CCHHHHH--HHhcCchhHHHHHHHHH-HHHHHHHh-hcccCCCc--hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCC
Q 020902 133 HSVKELW--HLATQPGFLVYGGIVLV-VVGVLIFK-FVPTHGNS--HLIVYVGICSAMGSITVMSVKALGIALKLSFSGH 206 (320)
Q Consensus 133 ~t~~el~--~~~~~~~fl~~~~~~~~-~~~~l~~~-~~~r~~~~--~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~ 206 (320)
.+..+.. ....+.....-...... .+...++. ..+|..++ ....+......+++.-... .+. ..+..+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~l-~~~~~~~~ 246 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSM---IGL-VVEKNNPS 246 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHH---HHH-HHccCCcc
Confidence 0000000 00000111100011111 11111111 12221111 1112222222222221111 111 11000000
Q ss_pred ccch--hhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 020902 207 NQFV--YYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVT 284 (320)
Q Consensus 207 ~~~~--~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l 284 (320)
.... ++..+.++...+.+. ....+.|+++++-+++.+ ..+.-..|+++++.|.++++|.... ..++|.++
T Consensus 247 ~~~~~~~~~~~~i~y~~i~t~-lay~lw~~~v~~~ga~~a-s~~~~L~PV~a~llg~l~LgE~lt~------~~~iG~~L 318 (358)
T PLN00411 247 VWIIHFDITLITIVTMAIITS-VYYVIHSWTVRHKGPLYL-AIFKPLSILIAVVMGAIFLNDSLYL------GCLIGGIL 318 (358)
T ss_pred cceeccchHHHHHHHHHHHHH-HHHHHHHHHHhccCchHH-HHHHhHHHHHHHHHHHHHhCCCCcH------HHHHHHHH
Confidence 1111 111222222223333 344467999999988744 4556688999999999999997653 24578888
Q ss_pred HHHHHhhhccCCC
Q 020902 285 ILSGTFLLHKTKD 297 (320)
Q Consensus 285 ~i~Gv~lLs~~~~ 297 (320)
++.|+.+..+.+.
T Consensus 319 Il~Gv~l~~~~~~ 331 (358)
T PLN00411 319 ITLGFYAVMWGKA 331 (358)
T ss_pred HHHHHHHHHhhhh
Confidence 8899888765433
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.81 E-value=5.2e-07 Score=85.02 Aligned_cols=213 Identities=11% Similarity=0.042 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHH-hhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCH
Q 020902 57 AGMITMIVGEIANFAAY-AFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSV 135 (320)
Q Consensus 57 ~G~~l~~~g~~~~~~al-~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~ 135 (320)
.|......+..+...+. ...|.+...-+..+.-+++.+++.+ +|||++++++.|.++...|+.++.. +++.+....
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~--~~~~~~~~~ 150 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS--GGNLSGNPW 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc--CcccccchH
Confidence 44444445566667777 8889888899999999999999975 7999999999999999999876532 211111011
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHH
Q 020902 136 KELWHLATQPGFLVYGGIVLVVVGVLIFKFVPTHGNSHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTW 215 (320)
Q Consensus 136 ~el~~~~~~~~fl~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~y 215 (320)
.+ .+.....+.-... ....+|..+++........-..++.... .... .. .+......++..|
T Consensus 151 G~-----------l~~l~a~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~--~~~~~~~~~~~~~ 212 (292)
T PRK11272 151 GA-----------ILILIASASWAFG-SVWSSRLPLPVGMMAGAAEMLAAGVVLL---IASL-LS--GERLTALPTLSGF 212 (292)
T ss_pred HH-----------HHHHHHHHHHHHH-HHHHHhcCCCcchHHHHHHHHHHHHHHH---HHHH-Hc--CCcccccCCHHHH
Confidence 11 1111111111110 1123333222221111111111211110 0000 10 0111122234444
Q ss_pred HHHH-HHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhcc
Q 020902 216 IFTV-VVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHK 294 (320)
Q Consensus 216 l~~~-~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~ 294 (320)
..+. ..+.+........+.++++.+++.+... ...+++.+.+.|.++++|... + ....|..+++.|++++++
T Consensus 213 ~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~-~~l~Pi~a~i~~~~~l~E~~t--~----~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 213 LALGYLAVFGSIIAISAYMYLLRNVRPALATSY-AYVNPVVAVLLGTGLGGETLS--P----IEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHHHHHHHcCCCCc--H----HHHHHHHHHHHHHHHHHH
Confidence 4333 3333445566677889999987755555 678999999999999999744 3 246788889999999876
Q ss_pred CCC
Q 020902 295 TKD 297 (320)
Q Consensus 295 ~~~ 297 (320)
++.
T Consensus 286 ~~~ 288 (292)
T PRK11272 286 GKY 288 (292)
T ss_pred HHh
Confidence 544
No 13
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.78 E-value=4.8e-06 Score=78.61 Aligned_cols=210 Identities=12% Similarity=0.042 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhh----cchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHH
Q 020902 62 MIVGEIANFAAYAF----APAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKE 137 (320)
Q Consensus 62 ~~~g~~~~~~al~~----~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~e 137 (320)
+.....+.+.++.. .|.+...-+..+.-+++.++++.++|||++++++.|+++...|++++...++ + .+.++
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~--~--~~~~~ 146 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN--G--LSLAE 146 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc--c--chhhh
Confidence 33444444455543 3555556677788899999999999999999999999999999987754211 1 01111
Q ss_pred HHHHh-cCchhHHHHHHHHHHHHHHHH-hhcccCCCc-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHH
Q 020902 138 LWHLA-TQPGFLVYGGIVLVVVGVLIF-KFVPTHGNS-HLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQT 214 (320)
Q Consensus 138 l~~~~-~~~~fl~~~~~~~~~~~~l~~-~~~~r~~~~-~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~ 214 (320)
++... .++.-..+.....+ ....+ ...+|..++ ++..+.. ..++.. +. ...... +....-.++..
T Consensus 147 ~~~~~~~~~~G~~~~l~aa~--~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~-l~---~~~~~~---~~~~~~~~~~~ 214 (295)
T PRK11689 147 LINNIASNPLSYGLAFIGAF--IWAAYCNVTRKYARGKNGITLFF---ILTALA-LW---IKYFLS---PQPAMVFSLPA 214 (295)
T ss_pred hhhccccChHHHHHHHHHHH--HHHHHHHHHhhccCCCCchhHHH---HHHHHH-HH---HHHHHh---cCccccCCHHH
Confidence 10000 01111111111111 11111 122332211 2221111 111111 10 000111 11111123334
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhcc
Q 020902 215 WIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHK 294 (320)
Q Consensus 215 yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~ 294 (320)
|..+.........-..+.++++++.+++.+.+. .-..|+++++.|.+++||..+. ....|.++++.|+++.-.
T Consensus 215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~-~~l~Pv~a~i~~~~~lgE~~~~------~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATA-SYFTPVLSAALAALLLSTPLSF------SFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-HHhHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHhHHHHhh
Confidence 433332222334455666999999998855554 5688999999999999998652 355677778888766543
No 14
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.78 E-value=6e-08 Score=80.20 Aligned_cols=113 Identities=23% Similarity=0.336 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCC---CCcc--------------CC-CccccccchhHH---HHHHHHHHHHHHH
Q 020902 11 FVLAVSSSIFIGSSFIIKKKGLKKAGTT---GTRA--------------GS-GGYSYLYEPWWW---AGMITMIVGEIAN 69 (320)
Q Consensus 11 v~lal~~a~~~a~g~vlqk~~~~~~~~~---~~~~--------------~~-~~~~~~~~p~w~---~G~~l~~~g~~~~ 69 (320)
.+.|+.+|++.++..++-|-|.+..+.. ..|. +. +...-...+.|. .+-+.-+++.++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Y 84 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHH
Confidence 4678899999999999999987744321 0000 00 000112223332 1224456788899
Q ss_pred HHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 70 FAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 70 ~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
+.|+..++.|.|.|+...+.++..+++..+||||+|..+|+|+.+|+.|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999988764
No 15
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.71 E-value=2e-08 Score=81.93 Aligned_cols=103 Identities=18% Similarity=0.201 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhhhhccCCCC--ccCCCccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHH
Q 020902 20 FIGSSFIIKKKGLKKAGTTGT--RAGSGGYSYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVTPLG-ALSIIFSAVLA 96 (320)
Q Consensus 20 ~~a~g~vlqk~~~~~~~~~~~--~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~~~la 96 (320)
+-+..+-+.|||.+..++... +.-.+...+++||++++++.+.-.|++..+..++-+|+|+..|+. +++++++++.+
T Consensus 7 ~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g 86 (113)
T PF10639_consen 7 LWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTG 86 (113)
T ss_pred HhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHH
Confidence 344556678887665543211 111234578999999999999999999999999999999999996 99999999999
Q ss_pred HHHhcccccccchhhHHHHhhhheee
Q 020902 97 HFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 97 ~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
+++-+|..+++.++|+.+++.|+.+.
T Consensus 87 ~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 87 WLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCcccchhHHHHHHHHHcCeeee
Confidence 77777777888899999999998865
No 16
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.69 E-value=1.9e-06 Score=81.35 Aligned_cols=223 Identities=17% Similarity=0.132 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCH
Q 020902 56 WAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSV 135 (320)
Q Consensus 56 ~~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~ 135 (320)
..|+. ..+...++..++.+.+.+..+-+.++..+++++++++++|||++++++.|.++++.|+.+.. ..+.+....
T Consensus 70 ~~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~---~~~~~~~~~ 145 (302)
T TIGR00817 70 PVAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS---DTELSFNWA 145 (302)
T ss_pred HHHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc---CCcccccHH
Confidence 34444 46777889999999999999999999999999999999999999999999999999987542 222111111
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHH-hhccc------CCCchHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhcCCc
Q 020902 136 KELWHLATQPGFLVYGGIVLVVVGVLIF-KFVPT------HGNSHLIVYVGICSAMG-SITVMSVKALGIALKLSFSGHN 207 (320)
Q Consensus 136 ~el~~~~~~~~fl~~~~~~~~~~~~l~~-~~~~r------~~~~~~~~~~~~~gllg-~~s~l~~K~v~~~l~~~~~g~~ 207 (320)
.+++ .....+. ...+ ...+| ....+...|....|.+. ..-............+..+...
T Consensus 146 G~~~-----------~l~a~~~--~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~ 212 (302)
T TIGR00817 146 GFLS-----------AMISNIT--FVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAIS 212 (302)
T ss_pred HHHH-----------HHHHHHH--HHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhc
Confidence 1111 1111111 1111 11222 22223333433222211 0000000000000000000000
Q ss_pred cchhhHHHHHH-HHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHH
Q 020902 208 QFVYYQTWIFT-VVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTIL 286 (320)
Q Consensus 208 ~~~~~~~yl~~-~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i 286 (320)
.......|... ....++..........++++.+++... ++....++++++.|..+++|... + ...+|..+++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~s-v~~~l~pv~~~~~~~~~lge~lt--~----~~~~G~~lil 285 (302)
T TIGR00817 213 GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHS-VGNCMKRVVVIVVSILFFGTKIS--P----QQVFGTGIAI 285 (302)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH-HHhhhhhhheeeeehhhcCCCCc--h----hHHHHHHHHH
Confidence 00101123222 222222222222334678888776444 44778889999999999999754 2 2457778899
Q ss_pred HHHhhhccCCCCCCCC
Q 020902 287 SGTFLLHKTKDMGDSP 302 (320)
Q Consensus 287 ~Gv~lLs~~~~~~~~~ 302 (320)
.|+.+-++.|.++.++
T Consensus 286 ~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 286 AGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHhccCcCC
Confidence 9999988877655443
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.68 E-value=2.2e-05 Score=71.99 Aligned_cols=210 Identities=15% Similarity=0.225 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHH-HHhcccccccchhhHHHHhhhheeeEEecCCCcccCCH
Q 020902 57 AGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAH-FILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSV 135 (320)
Q Consensus 57 ~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~-~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~ 135 (320)
.|......+..+.+.++...|.+..+++.....+++.+++. +++|||++++++.|..+...|+.++...+..+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~-- 152 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS-- 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHH--
Confidence 44455677888999999999999999999999999999997 667999999999999999999887755333332210
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHHHhh-cccCCCchHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhH
Q 020902 136 KELWHLATQPGFLVYGGIVLVVVGVLIFKF-VPTHGNSHLIVYVG-ICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQ 213 (320)
Q Consensus 136 ~el~~~~~~~~fl~~~~~~~~~~~~l~~~~-~~r~~~~~~~~~~~-~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~ 213 (320)
..-..+.....+... .+.. .++..+........ .... ..... .... .....+....+.
T Consensus 153 ---------~~g~~~~l~a~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~----~~~~~~~~~~~~ 212 (292)
T COG0697 153 ---------LLGLLLALAAALLWA--LYTALVKRLSRLGPVTLALLLQLL-LALLL----LLLF----FLSGFGAPILSR 212 (292)
T ss_pred ---------HHHHHHHHHHHHHHH--HHHHHHHHhcCCChHHHHHHHHHH-HHHHH----HHHH----HhccccccCCHH
Confidence 011111111111111 1111 22111111111110 1111 00000 0000 011111122333
Q ss_pred HHHHHH-HHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 020902 214 TWIFTV-VVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLL 292 (320)
Q Consensus 214 ~yl~~~-~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL 292 (320)
.|.... ..+.......+....++++.+++.+.+.. ...++.+...+..+++|..+ .. ...|..+++.|+++.
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~l~~~e~~~--~~----~~~G~~li~~g~~l~ 285 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLS-LLEPVFAALLGVLLLGEPLS--PA----QLLGAALVVLGVLLA 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHHHHHHHHHHHHHhCCCCc--HH----HHHHHHHHHHHHHHH
Confidence 333333 22223324556678899999988777766 67778888899999999765 32 345667888888888
Q ss_pred ccC
Q 020902 293 HKT 295 (320)
Q Consensus 293 s~~ 295 (320)
.++
T Consensus 286 ~~~ 288 (292)
T COG0697 286 SLR 288 (292)
T ss_pred hcc
Confidence 766
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.55 E-value=6.5e-05 Score=70.82 Aligned_cols=255 Identities=13% Similarity=0.061 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC---Ccc--C--------CCccccccchhH----HHHHHHHHHHHHHHH
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTG---TRA--G--------SGGYSYLYEPWW----WAGMITMIVGEIANF 70 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~---~~~--~--------~~~~~~~~~p~w----~~G~~l~~~g~~~~~ 70 (320)
..|+.+.+++.++.+.+...-|.+..+.+... .|- + ...+...+++.| +.|.. +.....+.+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 89 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFY 89 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHH
Confidence 56788999999999999999888765432110 000 0 000011122223 44543 455666788
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHHHHhcCchhHHH
Q 020902 71 AAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELWHLATQPGFLVY 150 (320)
Q Consensus 71 ~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~~~~~~~~fl~~ 150 (320)
.++...|.+...-+....-++..+++ +||.+ ++.+..+...|+.++...+.+.++ .+ +.-..+
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~-~~----------~~G~ll 152 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLPLGQDVSH-VD----------LTGAAL 152 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeeecCCCccc-CC----------hHHHHH
Confidence 88999999987777777777776665 35544 455667778888776532221111 11 101111
Q ss_pred HHHHHHHHHHHHHhh-cccCCCc-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHHHH-HHHHHHHHHH
Q 020902 151 GGIVLVVVGVLIFKF-VPTHGNS-HLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTWIF-TVVVIFTCLL 227 (320)
Q Consensus 151 ~~~~~~~~~~l~~~~-~~r~~~~-~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~yl~-~~~~v~~~l~ 227 (320)
.....+ ....+.. .++..++ .+... ....++++.- +. .... ..+.....++..|.. +...+.+...
T Consensus 153 ~l~aa~--~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~-l~--~~~~-----~~~~~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 153 ALGAGA--CWAIYILSGQRAGAEHGPATV-AIGSLIAALI-FV--PIGA-----LQAGEALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHH--HHHHHHHHHHHHhccCCchHH-HHHHHHHHHH-HH--HHHH-----HccCcccCCHHHHHHHHHHHHHHHHH
Confidence 111111 1111211 2221111 11111 1122222211 11 0110 111112234444433 2345556677
Q ss_pred HHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCC
Q 020902 228 QINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDM 298 (320)
Q Consensus 228 Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~ 298 (320)
+....|.++++.+++.+.+. ...+++++.+.|.+++||..+ + ....|..+++.|++..++.+++
T Consensus 222 ~~~l~~~~~~~~~a~~as~~-~~l~Pv~a~l~~~l~lgE~~~--~----~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTL-MSMEPALAAVSGMIFLGETLT--L----IQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHhcChhHHHHH-HHhHHHHHHHHHHHHhCCCCc--H----HHHHHHHHHHHHHHHHHhcCCC
Confidence 87888999999998765554 568999999999999999754 3 3456777777777777655433
No 19
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.46 E-value=6.5e-07 Score=72.75 Aligned_cols=66 Identities=30% Similarity=0.466 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEE
Q 020902 58 GMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVL 124 (320)
Q Consensus 58 G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~ 124 (320)
|......+..+...|+.+.| ..+.++.+++.+++.++++.++|||+++++|.|+.++..|++++..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAW 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 44445578899999999999 6999999999999999999999999999999999999999988755
No 20
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.35 E-value=6.5e-05 Score=72.88 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 65 GEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 65 g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
+..+...++...+.+..+-+-+++-+++++++++++|||++++++.++++++.|+.+..
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34556689999999999999999999999999999999999999999999999988765
No 21
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.31 E-value=0.00045 Score=65.49 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHH
Q 020902 60 ITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELW 139 (320)
Q Consensus 60 ~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~ 139 (320)
.++.++..++-.|+.+.|.+.-+-+-+...+++++++.+++|+|.+++|+.++++++.|+.+......++++..+.++-
T Consensus 72 ~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~- 150 (303)
T PF08449_consen 72 FLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSF- 150 (303)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccc-
Confidence 5566888899999999999999999999999999999999999999999999999999999887765443332221100
Q ss_pred HHhcCch-hHHHHHHHHHHHHHH-HH--hhcccCCCc--hHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhcCCccchhh
Q 020902 140 HLATQPG-FLVYGGIVLVVVGVL-IF--KFVPTHGNS--HLIVYVGICSAMG-SITVMSVKALGIALKLSFSGHNQFVYY 212 (320)
Q Consensus 140 ~~~~~~~-fl~~~~~~~~~~~~l-~~--~~~~r~~~~--~~~~~~~~~gllg-~~s~l~~K~v~~~l~~~~~g~~~~~~~ 212 (320)
++. -+.+..+..+.-... .+ +..++++.. ..+.|--.-++.. .......+ .+...+.. .....||
T Consensus 151 ----~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~--~~~~~~~~--~f~~~~p 222 (303)
T PF08449_consen 151 ----SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLP--TGEFRSAI--RFISAHP 222 (303)
T ss_pred ----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH--hhHhhHHH--HHHHHhH
Confidence 000 111111111111110 00 112223222 2334433333222 11111101 11111100 1224667
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 020902 213 QTWIFTVVVIF-TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFL 291 (320)
Q Consensus 213 ~~yl~~~~~v~-~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~l 291 (320)
..+..+..... ..+.|. +...-.+++++.. .-+....-...+++.+.++|++ +.++.++ .|..+++.|+.+
T Consensus 223 ~~~~~l~~~s~~~~~g~~-~i~~~~~~~~al~-~t~v~t~Rk~~sillS~~~f~~--~~~~~~~----~G~~lv~~g~~~ 294 (303)
T PF08449_consen 223 SVLLYLLLFSLTGALGQF-FIFYLIKKFSALT-TTIVTTLRKFLSILLSVIIFGH--PLSPLQW----IGIVLVFAGIFL 294 (303)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhcCchh-hhhHHHHHHHHHHHHHHHhcCC--cCChHHH----HHHHHhHHHHHH
Confidence 66665554433 344454 4456677777664 3444556677889999999997 4555554 455556666665
Q ss_pred hccCC
Q 020902 292 LHKTK 296 (320)
Q Consensus 292 Ls~~~ 296 (320)
=+..|
T Consensus 295 ~~~~~ 299 (303)
T PF08449_consen 295 YSYAK 299 (303)
T ss_pred HHHhh
Confidence 44333
No 22
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.28 E-value=7.6e-06 Score=67.69 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 55 WWAGMITMIVGEIANFAAYAFAPAILVTPL-GALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 55 w~~G~~l~~~g~~~~~~al~~~p~slv~pl-~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
|+..+.++++++.+...+++..|+++..|+ .+++.+.+.+.+.+++||+++..+++|+.+|+.|++++-..++
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 566677788999999999999999999999 4799999999999999999999999999999999987755443
No 23
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.28 E-value=5.9e-06 Score=67.32 Aligned_cols=96 Identities=14% Similarity=0.142 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHH-HHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHHHH
Q 020902 15 VSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWW-AGMITMIVGEIANFAAYAFAPAILVTPL-GALSIIFS 92 (320)
Q Consensus 15 l~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~-~G~~l~~~g~~~~~~al~~~p~slv~pl-~~~~lv~~ 92 (320)
+++.++-..|....|++. =+++|.|. ..+.++++++.+...|++..|+++..|+ .+++.+.+
T Consensus 8 ~~a~~~Ev~~~~~lK~s~----------------gf~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~ 71 (110)
T PRK09541 8 GGAILAEVIGTTLMKFSE----------------GFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLI 71 (110)
T ss_pred HHHHHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 344555666666677651 12355554 4455678888889999999999999999 67999999
Q ss_pred HHHHHHHhcccccccchhhHHHHhhhheeeEEec
Q 020902 93 AVLAHFILREKLHIFGMLGCALCVVGSVSIVLHA 126 (320)
Q Consensus 93 ~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~ 126 (320)
.+.+.+++||+++..+++|..+|+.|++++-..+
T Consensus 72 ~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 72 SLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998875443
No 24
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.18 E-value=0.00019 Score=67.15 Aligned_cols=214 Identities=12% Similarity=0.196 Sum_probs=124.6
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhcccccccchh----hHHHHhhhheeeEE
Q 020902 53 PWWWAGMI---TMIVGEIANFAAYAFAPAILVTPLG-ALSIIFSAVLAHFILREKLHIFGML----GCALCVVGSVSIVL 124 (320)
Q Consensus 53 p~w~~G~~---l~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~~~la~~~l~e~~~~~~~~----g~~li~~G~~~~~~ 124 (320)
..|+.+++ +-.+|.+.|+.++....+|...|+. +.+++.|.+.+.+++||--+..+++ +.+++++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 45666664 3578999999999999999999998 8899999999999999998888874 88899999887766
Q ss_pred ecCCCcccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhcccCCCchHH--HHHHHHH-hhhHHHHHHHHHHHHHHHH
Q 020902 125 HAPHERTIHSVKELWHLATQPGFLVYGGIVLVVVGVLIFKFVPTHGNSHLI--VYVGICS-AMGSITVMSVKALGIALKL 201 (320)
Q Consensus 125 ~~~~~~~~~t~~el~~~~~~~~fl~~~~~~~~~~~~l~~~~~~r~~~~~~~--~~~~~~g-llg~~s~l~~K~v~~~l~~ 201 (320)
..+++++..+.++..+ -+....+.. +....|..-+|..+-++. .+.=.-| ++++.--...
T Consensus 123 ~~~~~~~~~~~~~~~k------gi~~Ll~st--igy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~~--------- 185 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKK------GILALLIST--IGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNLF--------- 185 (269)
T ss_pred ccccccccccccchhh------HHHHHHHHH--HHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhhc---------
Confidence 5544443222222221 111111111 222334444554332221 1111122 2221111100
Q ss_pred HhcCCccchhhHHHHHHHHHHHHHHHH-HHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHH
Q 020902 202 SFSGHNQFVYYQTWIFTVVVIFTCLLQ-INYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELC 280 (320)
Q Consensus 202 ~~~g~~~~~~~~~yl~~~~~v~~~l~Q-~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~ 280 (320)
. ++.+.+...|.=+...+.-.+.- .+++... +--.+..+|+-|.. .+.+.+.|+.+|+|... ..++.....
T Consensus 186 --~-~~~~~~k~~~~nil~G~~w~ignl~~~is~~--~~G~a~af~lSQ~~-vvIStlgGI~il~E~Kt--~ke~~~~~~ 257 (269)
T PF06800_consen 186 --S-KKPFFEKKSWKNILTGLIWGIGNLFYLISAQ--KNGVATAFTLSQLG-VVISTLGGIFILKEKKT--KKEMIYTLI 257 (269)
T ss_pred --c-cccccccchHHhhHHHHHHHHHHHHHHHhHH--hccchhhhhHHhHH-HHHHHhhhheEEEecCc--hhhHHHHHH
Confidence 0 11222222333222221111111 1122111 22234567777776 67788999999999864 568888899
Q ss_pred HHHHHHHHHhh
Q 020902 281 GFVTILSGTFL 291 (320)
Q Consensus 281 G~~l~i~Gv~l 291 (320)
|+++++.|.++
T Consensus 258 G~~Liv~G~il 268 (269)
T PF06800_consen 258 GLILIVIGAIL 268 (269)
T ss_pred HHHHHHHhhhc
Confidence 99999888775
No 25
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.14 E-value=0.00022 Score=65.65 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 62 MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 62 ~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
...+..+.+.++...|.+...-+..+.-+++++++++++|||+++++|+|.++...|++++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999987654
No 26
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.03 E-value=2.2e-05 Score=74.01 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC---c-----------cCCCccccccch-----hHHHHHHHHHHHHH
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGT---R-----------AGSGGYSYLYEP-----WWWAGMITMIVGEI 67 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~---~-----------~~~~~~~~~~~p-----~w~~G~~l~~~g~~ 67 (320)
..+|.++++.++++++...++.||..++.+.... . ...+. ....++ .++.|+...+++..
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~ 224 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYS 224 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999998886443221100 0 00000 011122 23566666778888
Q ss_pred HHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCC
Q 020902 68 ANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHE 129 (320)
Q Consensus 68 ~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~ 129 (320)
++..+++..|.+.+.++..+..+++.+++.+++||+++..+++|.++++.|+.......++|
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999988765544443
No 27
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.99 E-value=4.2e-05 Score=60.31 Aligned_cols=85 Identities=15% Similarity=0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHH-HHHHHHHHHHHHHhhcchhhhhcch-hhHHHHH
Q 020902 15 VSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMI-TMIVGEIANFAAYAFAPAILVTPLG-ALSIIFS 92 (320)
Q Consensus 15 l~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~-l~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~ 92 (320)
+.+.++-..++...|++ +-++++.|..+.. ++.+++.+...|++..|+++..|+- +++.+..
T Consensus 7 ~~a~~~ev~~~~~lK~s----------------~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~ 70 (93)
T PF00893_consen 7 LLAILFEVVGTIALKAS----------------HGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGV 70 (93)
T ss_dssp HHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------HhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 34455666777777773 1223445555554 5888889999999999999999975 5999999
Q ss_pred HHHHHHHhcccccccchhhHHHH
Q 020902 93 AVLAHFILREKLHIFGMLGCALC 115 (320)
Q Consensus 93 ~~la~~~l~e~~~~~~~~g~~li 115 (320)
.+.+.+++||++|..++.|+.+|
T Consensus 71 ~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 71 TLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHhheeeC
Confidence 99999999999999999999875
No 28
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.97 E-value=0.00031 Score=68.02 Aligned_cols=288 Identities=13% Similarity=0.105 Sum_probs=154.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-C-----CC-------C---c--cCCCcccccc---chhHHHHHH-
Q 020902 3 ISSDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAG-T-----TG-------T---R--AGSGGYSYLY---EPWWWAGMI- 60 (320)
Q Consensus 3 ~~~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~-~-----~~-------~---~--~~~~~~~~~~---~p~w~~G~~- 60 (320)
|..+..+|++..+++.++.+.=.+=+||. ++=+ + .. + . ......++++ ...|..+++
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKV-KKWSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhccccccccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 66788999999999999988888888883 2111 0 00 0 0 0001222332 345555553
Q ss_pred --HHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhcccc---cccc----hhhHHHHhhhheeeEEecCCCc
Q 020902 61 --TMIVGEIANFAAYAFAPAILVTPLG-ALSIIFSAVLAHFILREKL---HIFG----MLGCALCVVGSVSIVLHAPHER 130 (320)
Q Consensus 61 --l~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~~~la~~~l~e~~---~~~~----~~g~~li~~G~~~~~~~~~~~~ 130 (320)
+-.+|.+.++.+.+...+|+-.|+. +++++++.++...+++|=- +..+ .+|++++++|+++....+...+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4578999999999999999999996 5778999999999998643 4333 4699999999998876433222
Q ss_pred ccCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHhh----c---cc----CCCchH-HHHHHHHH-hhhHHHHHHHHHHHH
Q 020902 131 TIHSVKELWHLATQPGFLVYGGIVLVVVGVLIFKF----V---PT----HGNSHL-IVYVGICS-AMGSITVMSVKALGI 197 (320)
Q Consensus 131 ~~~t~~el~~~~~~~~fl~~~~~~~~~~~~l~~~~----~---~r----~~~~~~-~~~~~~~g-llg~~s~l~~K~v~~ 197 (320)
+..+.||-.+. ....-+...++..+.... +.+ + ++ .|.... ...-...+ ++|++..-..=+...
T Consensus 160 ~~~~~~~~~~~-~~~KGi~ialisgi~~~~--f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~ 236 (345)
T PRK13499 160 RKMGIKKAEEF-NLKKGLILAVMSGIFSAC--FSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIR 236 (345)
T ss_pred ccccccccccc-chHhHHHHHHHHHHHHHH--HHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111100000 001112222222222111 110 0 11 111111 01111222 233332111000110
Q ss_pred HHH-HHhcCCccchh-----hHHHHHHHHHHHHHHHHHHHHhHhhccc-C--ceeechhHHHHHHHHHHHHHHHHhcccC
Q 020902 198 ALK-LSFSGHNQFVY-----YQTWIFTVVVIFTCLLQINYLNKALDTF-N--TAVISPVYYVMFTTLTIVASIIMFKDWD 268 (320)
Q Consensus 198 ~l~-~~~~g~~~~~~-----~~~yl~~~~~v~~~l~Q~~~ln~aL~~~-~--a~~v~P~~~v~~~~~~i~~G~i~f~E~~ 268 (320)
.-+ +..+....+.. +.-|++....-..-..|..+.-.+-++- + +.+..++-+-...+++.+.|+ +++|+.
T Consensus 237 ~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K 315 (345)
T PRK13499 237 LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWK 315 (345)
T ss_pred HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhcc
Confidence 001 00000111221 3445544443333444554443332222 1 122344554555677888888 599999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhccC
Q 020902 269 SQNTSQIVTELCGFVTILSGTFLLHKT 295 (320)
Q Consensus 269 ~~~~~~~~~~~~G~~l~i~Gv~lLs~~ 295 (320)
..+..+....++|+++++.|.+++.-.
T Consensus 316 ~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 316 GASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 988889999999999999999988643
No 29
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.93 E-value=0.00012 Score=59.47 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHH-HHHHHHHHHHHHhhcchhhhhcchh-h
Q 020902 10 GFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMIT-MIVGEIANFAAYAFAPAILVTPLGA-L 87 (320)
Q Consensus 10 Gv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l-~~~g~~~~~~al~~~p~slv~pl~~-~ 87 (320)
....=+++.++=-.|....|++ +-++||.|.+.... +.+++.+-..|++..|+++..++-+ +
T Consensus 8 ~~~~L~~Ai~~Ev~~t~~Lk~s----------------~gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~Gi 71 (109)
T PRK10650 8 HAAWLALAIVLEIVANIFLKFS----------------DGFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGF 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------------cCCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence 3344445555555666666654 11346666665544 6677778888899999999999854 8
Q ss_pred HHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 88 SIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 88 ~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
+.+.+.+.+.+++||+++..++.|..+++.|++.+
T Consensus 72 G~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 72 GIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999998764
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.81 E-value=0.0012 Score=61.06 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 59 MITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 59 ~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
-.+|.+...+.++++...|.+.-|-+...-++++++++.++||+|+++++|.+..+.+.|++++-....
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 367999999999999999999999999999999999999999999999999999999999988765443
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.78 E-value=0.00021 Score=65.31 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--Cc---------------cCCCccccccchhH--H--HHHHHHHH
Q 020902 6 DNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTG--TR---------------AGSGGYSYLYEPWW--W--AGMITMIV 64 (320)
Q Consensus 6 ~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~--~~---------------~~~~~~~~~~~p~w--~--~G~~l~~~ 64 (320)
....|..+++.++++.+...++.|+..++.+... .. ...+.........| . .|....+.
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999764433110 00 00000111112233 2 33344567
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhh
Q 020902 65 GEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGS 119 (320)
Q Consensus 65 g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~ 119 (320)
+..++..+++..|.+.+..+..+..+++.+++.+++||+++.+++.|+.+++.|+
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999999999999999999999885
No 32
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.68 E-value=0.00036 Score=56.36 Aligned_cols=71 Identities=18% Similarity=0.040 Sum_probs=61.3
Q ss_pred chhHHHHH-HHHHHHHHHHHHHHhhcchhhhhcchh-hHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 52 EPWWWAGM-ITMIVGEIANFAAYAFAPAILVTPLGA-LSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 52 ~p~w~~G~-~l~~~g~~~~~~al~~~p~slv~pl~~-~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
++.|.+.. .++..++.+-..|++..|+++..++-+ ++.+.+.+.+.+++||+++..++.|+.+++.|++.+
T Consensus 28 ~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 28 RLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 55554444 457778888888999999999999865 999999999999999999999999999999998876
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.66 E-value=0.00021 Score=69.74 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-------------------ccCCCccccc--cchhHHHHHH----H
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGT-------------------RAGSGGYSYL--YEPWWWAGMI----T 61 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~-------------------~~~~~~~~~~--~~p~w~~G~~----l 61 (320)
+.+|..+++.++++.++..++||+-.++-+.... .++.+..... .++ ++..++ .
T Consensus 187 ~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~y~~i~ 265 (358)
T PLN00411 187 WLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI-TLITIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch-HHHHHHHHHHH
Confidence 5679999999999999999999986554322100 0000000000 011 111121 1
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEe
Q 020902 62 MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLH 125 (320)
Q Consensus 62 ~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~ 125 (320)
..+++.+|..+.+..+.+.+....-+.-+++++++..+++|+++..+++|.++|+.|+.+....
T Consensus 266 t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~ 329 (358)
T PLN00411 266 TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG 329 (358)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 2346777888999999999999999999999999999999999999999999999998876543
No 34
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.64 E-value=0.00014 Score=68.12 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCC-CC-c--c-----C-C---------Ccccc-ccchhH----HHHHHHHHH
Q 020902 9 HGFVLAVSSSIFIGSSFIIKKKGLKKAGTT-GT-R--A-----G-S---------GGYSY-LYEPWW----WAGMITMIV 64 (320)
Q Consensus 9 iGv~lal~~a~~~a~g~vlqk~~~~~~~~~-~~-~--~-----~-~---------~~~~~-~~~p~w----~~G~~l~~~ 64 (320)
-|..+++.++++++.+.++.|+...+.+.. .. . . . . +.... ..++.| +.+....++
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGG 223 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence 467788999999999998888753322211 00 0 0 0 0 00000 011112 233344567
Q ss_pred HHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhhee
Q 020902 65 GEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVS 121 (320)
Q Consensus 65 g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~ 121 (320)
+..++..+++..|.+.+.++.-++.+++.+++.+++||+++..+++|..+++.|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 888899999999999999999999999999999999999999999999999999865
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.64 E-value=4e-05 Score=61.43 Aligned_cols=67 Identities=27% Similarity=0.437 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 56 WAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 56 ~~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
..|.....++..++..++...|.+.+.++..++.+++.+++..++|||++++++.|+.+++.|+.++
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455555788899999999999999999999999999999999999999999999999999998754
No 36
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.56 E-value=0.00043 Score=65.33 Aligned_cols=115 Identities=17% Similarity=0.076 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCc------------cCCCccccccch-hH----HHHHHHHHHHHHHHH
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTR------------AGSGGYSYLYEP-WW----WAGMITMIVGEIANF 70 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~------------~~~~~~~~~~~p-~w----~~G~~l~~~g~~~~~ 70 (320)
..|.++++.++++.+.+.++.||-.++.+..... .-.+....-.++ .| +.| ...++++.++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~ 233 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWN 233 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4699999999999999999999954332211000 000000011122 22 122 22456788899
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 71 AAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 71 ~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
.+++..|.+.+.++..+..+++.+++..++||+++..+++|.++|+.|+.+..
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999977653
No 37
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00077 Score=54.39 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=61.8
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHhhcchhhhhcc-hhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 51 YEPWWWAGMI-TMIVGEIANFAAYAFAPAILVTPL-GALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 51 ~~p~w~~G~~-l~~~g~~~~~~al~~~p~slv~pl-~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
+|+.|.+.+. .+.+++.+-..|+...|+++..++ .+++.+.+.+.+.+++||+++..+++|..+++.|++.+
T Consensus 28 ~~~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 28 TRLWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 3555655554 467788888899999999999986 67899999999999999999999999999999998765
No 38
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.41 E-value=0.00085 Score=63.17 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC----------------CccCCCccccccc-hhHH----HHHHHHHHH
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTG----------------TRAGSGGYSYLYE-PWWW----AGMITMIVG 65 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~----------------~~~~~~~~~~~~~-p~w~----~G~~l~~~g 65 (320)
...|.++++.++++++.+.+..||..++.+... ...+ +......+ ..|. .|+...+++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSG-ERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcC-CcccccCCHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999998543221100 0000 00011111 2232 333445677
Q ss_pred HHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 66 EIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 66 ~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
..++..+++..|.+.+..+..+..+++++++.+++||+++..+++|..+++.|+.+..
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999987653
No 39
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.38 E-value=0.00035 Score=64.95 Aligned_cols=268 Identities=17% Similarity=0.237 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCC--CCcc-CC-----Cccccccch--------hH--HHHHHHHHHHHHHHH
Q 020902 9 HGFVLAVSSSIFIGSSFIIKKKGLKKAGTT--GTRA-GS-----GGYSYLYEP--------WW--WAGMITMIVGEIANF 70 (320)
Q Consensus 9 iGv~lal~~a~~~a~g~vlqk~~~~~~~~~--~~~~-~~-----~~~~~~~~p--------~w--~~G~~l~~~g~~~~~ 70 (320)
+|+++..++ .+++...++-++...-.++. ..|- .. .-.-|.+.| .| +-|+.-+ .|..+..
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~-tgvmlmy 115 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGF-TGVMLMY 115 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhh-hHHHHHH
Confidence 567777788 77777777777765433321 0000 00 001111211 12 1232222 4556788
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE----EecCCCcccCCHHHHHHHhcCch
Q 020902 71 AAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV----LHAPHERTIHSVKELWHLATQPG 146 (320)
Q Consensus 71 ~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~----~~~~~~~~~~t~~el~~~~~~~~ 146 (320)
.||...|++=..-+.-.+-+++.++++.+||||.|+.|.+|..+...|+++++ ++|.+++...+.+ . -+..|.
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~-~--~~~~~g 192 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ-V--EYDIPG 192 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc-c--cccCCc
Confidence 99999998888888888999999999999999999999999999999999885 3554433222211 1 112233
Q ss_pred hHHHHH-HHHHHHHHHHHh-hcccCCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHHH-HHHHHHH
Q 020902 147 FLVYGG-IVLVVVGVLIFK-FVPTHGNSHLIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTWI-FTVVVIF 223 (320)
Q Consensus 147 fl~~~~-~~~~~~~~l~~~-~~~r~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~yl-~~~~~v~ 223 (320)
-..-+. +........+.+ ..++-...-.+-|-+.-++..+. +-... ......-..+.=|. ++...+.
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~--I~~~~--------ig~~~lP~cgkdr~l~~~lGvf 262 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSL--IGCAS--------IGAVQLPHCGKDRWLFVNLGVF 262 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHH--HHHhh--------ccceecCccccceEEEEEehhh
Confidence 211111 111111111111 12221111111222211111111 00001 11111122222233 3334555
Q ss_pred HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 020902 224 TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMG 299 (320)
Q Consensus 224 ~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 299 (320)
..+.| .++..++|+-.+-. +.++...+.+.+..--+++|+|+.. .|.+ +|.+.++..++..++.|..+
T Consensus 263 gfigQ-IllTm~lQiErAGp-vaim~~~dvvfAf~wqv~ff~~~Pt--~ws~----~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 263 GFIGQ-ILLTMGLQIERAGP-VAIMTYTDVVFAFFWQVLFFGHWPT--IWSW----VGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred hhHHH-HHHHHHhhhhccCC-eehhhHHHHHHHHHHHHHHhcCCCh--HHHh----hceeeeehhHHHHHHHHHhc
Confidence 55656 57899999665432 3466777888899999999999854 4443 45555555566666666665
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.36 E-value=0.005 Score=50.10 Aligned_cols=107 Identities=12% Similarity=0.105 Sum_probs=70.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHH
Q 020902 176 VYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTL 255 (320)
Q Consensus 176 ~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~ 255 (320)
+|..++.++.....++.|.-.. ..+..+++|.........+.+...-.+++..++++-|....+|+.+ .-.+.
T Consensus 4 ~~l~~ai~~ev~g~~~lK~s~~------~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~ 76 (111)
T PRK15051 4 LTLVFASLLSVAGQLCQKQATR------PVAIGKRRKHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVW 76 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHH-HHHHH
Confidence 3444455554444445554211 0111234544333333333444556778899999999999999999 78888
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccC
Q 020902 256 TIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKT 295 (320)
Q Consensus 256 ~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~ 295 (320)
+.+.|..+|+|..+. ...+|..++++|+++++++
T Consensus 77 ~~~~~~l~f~E~ls~------~~~~Gi~lii~Gv~~i~~~ 110 (111)
T PRK15051 77 VTLAAVKLWHEPVSP------RHWCGVAFIIGGIVILGST 110 (111)
T ss_pred HHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHHhcc
Confidence 899999999997653 3557888889999998864
No 41
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.33 E-value=0.0016 Score=61.48 Aligned_cols=115 Identities=21% Similarity=0.184 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCc---------------------cCCC-c-cc-cccchhHH-----HH
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTR---------------------AGSG-G-YS-YLYEPWWW-----AG 58 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~---------------------~~~~-~-~~-~~~~p~w~-----~G 58 (320)
..|..+++.++++.+...+++||-.++.+..... .+.. . .. .-.++..| .|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 4799999999999999999999854332211000 0000 0 00 00122222 23
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 59 MITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 59 ~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
++..++++.++..+++..+...+.++..+.-+++.+++.+++||+++..+++|.++++.|+.+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~ 285 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYIN 285 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 4445677778888888899999999999999999999999999999999999999999998754
No 42
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.32 E-value=0.0018 Score=53.90 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhcc
Q 020902 215 WIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHK 294 (320)
Q Consensus 215 yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~ 294 (320)
|+.+-+.....-.+.|| +||+.++++.++|+= -......++.+..+++|..... -..|+.++.+|++++++
T Consensus 69 flilSGla~glswl~Yf--~ALk~G~as~VvPld-k~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 69 FLILSGLAGGLSWLLYF--RALKKGKASRVVPLD-KTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVSL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHH--HHHhcCCcceEEEcc-cccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEec
Confidence 44444444444445555 799999999999984 4566678899999999987643 34788999999999886
Q ss_pred C
Q 020902 295 T 295 (320)
Q Consensus 295 ~ 295 (320)
+
T Consensus 140 ~ 140 (140)
T COG2510 140 R 140 (140)
T ss_pred C
Confidence 4
No 43
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.20 E-value=0.0092 Score=48.60 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=62.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHH
Q 020902 209 FVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSG 288 (320)
Q Consensus 209 ~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~G 288 (320)
|+++.+....+. +...-++++.+++++-|..+.+|+-...-++...+.|.++|+|..+. .-..|..+++.|
T Consensus 27 f~~~~~~i~~~~---~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~------~~~~gi~lIi~G 97 (110)
T PRK09541 27 FTRLWPSVGTII---CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL------PAIIGMMLICAG 97 (110)
T ss_pred CCchhHHHHHHH---HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHH
Confidence 677777665433 33556778899999999999999998888999999999999997653 355788889999
Q ss_pred HhhhccCC
Q 020902 289 TFLLHKTK 296 (320)
Q Consensus 289 v~lLs~~~ 296 (320)
++++...+
T Consensus 98 Vi~l~l~~ 105 (110)
T PRK09541 98 VLVINLLS 105 (110)
T ss_pred HHHHhcCC
Confidence 99996544
No 44
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.07 E-value=0.015 Score=48.20 Aligned_cols=68 Identities=16% Similarity=0.258 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCC
Q 020902 224 TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKD 297 (320)
Q Consensus 224 ~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~ 297 (320)
+...-++++.+++++-|..+.+|+....-++...+.|..+|+|..+. .-.+|..+++.|++.+...++
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~------~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSL------MKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHHHHHhhcCCC
Confidence 34556788999999999999999988888889999999999997653 356788889999999865554
No 45
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=96.99 E-value=0.17 Score=47.84 Aligned_cols=118 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh----hhhhccCCC--------------CccCCCccccccchhHHHHHHHHHHHHH
Q 020902 6 DNVHGFVLAVSSSIFIGSSFIIKKK----GLKKAGTTG--------------TRAGSGGYSYLYEPWWWAGMITMIVGEI 67 (320)
Q Consensus 6 ~~~iGv~lal~~a~~~a~g~vlqk~----~~~~~~~~~--------------~~~~~~~~~~~~~p~w~~G~~l~~~g~~ 67 (320)
+.--|+++++.+.++.+.--...|. +..+.-.++ .|.-.+.++..|+|+=+....+..+=..
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3445778888888776655544443 222110010 0111134567888887777776655555
Q ss_pred HHHHHHhhcchhhhhcchhhHH----HHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 68 ANFAAYAFAPAILVTPLGALSI----IFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 68 ~~~~al~~~p~slv~pl~~~~l----v~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
.|..-+-.+|-+==.==.+++| ++|.++++.++|||++|.||+++.+...|+....
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~ 143 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQT 143 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 6777777766541111123333 4678899999999999999999999999977543
No 46
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.85 E-value=0.0067 Score=57.23 Aligned_cols=62 Identities=18% Similarity=-0.014 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEE
Q 020902 63 IVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVL 124 (320)
Q Consensus 63 ~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~ 124 (320)
.++..++..+++..|.+.+.++.-+..+++.+++.++++|+++..++.|.++|+.|+.++..
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999888776643
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.81 E-value=0.0061 Score=55.76 Aligned_cols=116 Identities=24% Similarity=0.262 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-Cc------c--------CCCcc--ccccchhH--HHHHHHHHHHHHH
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTG-TR------A--------GSGGY--SYLYEPWW--WAGMITMIVGEIA 68 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~-~~------~--------~~~~~--~~~~~p~w--~~G~~l~~~g~~~ 68 (320)
..|..+++.++++.+...+.+|+-. +..... .. . ..+.. ...+...+ ..|+...+++..+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999754 211100 00 0 00000 11111111 2333334457888
Q ss_pred HHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEE
Q 020902 69 NFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVL 124 (320)
Q Consensus 69 ~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~ 124 (320)
+..++...|.+.+.++.....+++.+++.++++|+++.++++|+++++.|+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999776543
No 48
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.81 E-value=0.028 Score=45.43 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 020902 208 QFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILS 287 (320)
Q Consensus 208 ~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~ 287 (320)
.|+++.++++.+.. ...-.+++.+++|+-|..+.+++-...-++...+.|..+|+|..+. ...+|..+++.
T Consensus 25 gf~~~~~~~~~i~~---~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~------~~~~gi~lIi~ 95 (105)
T PRK11431 25 GFSRLTPSIITVTA---MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASP------ARLLSLALIVA 95 (105)
T ss_pred CCccHHHHHHHHHH---HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHH
Confidence 37788877765433 3455789999999999999999998888899999999999997653 24577888899
Q ss_pred HHhhhcc
Q 020902 288 GTFLLHK 294 (320)
Q Consensus 288 Gv~lLs~ 294 (320)
|++.|..
T Consensus 96 GVv~l~l 102 (105)
T PRK11431 96 GIIGLKL 102 (105)
T ss_pred HHHhhhc
Confidence 9998853
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.78 E-value=0.021 Score=47.83 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHH-HHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCC
Q 020902 220 VVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASI-IMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDM 298 (320)
Q Consensus 220 ~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~-i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~ 298 (320)
..+.+......+.+.++++.|.+..+|+....+....+..-. .+|+|..+. ...+|..++++|+++++++++.
T Consensus 53 lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~------~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 53 LGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSL------KKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHHHHhccCCCC
Confidence 344455667778899999999999999988776444444333 589997653 3668899999999999876553
No 50
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.42 Score=46.30 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEE
Q 020902 54 WWWAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVL 124 (320)
Q Consensus 54 ~w~~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~ 124 (320)
+|-+=-+++.+-+-++.++++-.|.+.=|....+-++.+++++..+|++|+++++|.+.++...|+.++-.
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 33444467888777999999999999999999999999999999999999999999999999999988753
No 51
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.049 Score=44.02 Aligned_cols=77 Identities=25% Similarity=0.247 Sum_probs=60.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHH
Q 020902 209 FVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSG 288 (320)
Q Consensus 209 ~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~G 288 (320)
|+++.+++..+.. ...-.+++.+++|+-|..+.+++-.-+-+....+.|.++|+|..+. .-..|..++++|
T Consensus 27 f~~~~~~il~~v~---~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~------~~~~gl~LiiaG 97 (106)
T COG2076 27 FTRLWPSILTIVG---YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSL------IKLLGLALILAG 97 (106)
T ss_pred ccccchHHHHHHH---HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCH------HHHHHHHHHHHH
Confidence 6666666654433 2445678999999999999999999888999999999999997652 355778889999
Q ss_pred Hhhhcc
Q 020902 289 TFLLHK 294 (320)
Q Consensus 289 v~lLs~ 294 (320)
++.|-.
T Consensus 98 vi~Lk~ 103 (106)
T COG2076 98 VIGLKL 103 (106)
T ss_pred HHHhhh
Confidence 998854
No 52
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.47 E-value=0.06 Score=43.81 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=60.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 020902 208 QFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILS 287 (320)
Q Consensus 208 ~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~ 287 (320)
.+++|.+....+.. ...-.+++.+++|+-|..+.+|+-...-++...+.|..+|+|..+. ....|..+++.
T Consensus 31 gf~~~~~~~~~~~~---~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~------~~~~gi~lIi~ 101 (109)
T PRK10650 31 GFRRKIYGILSLAA---VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNR------KGWIGLVLLLA 101 (109)
T ss_pred CCcchHHHHHHHHH---HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH
Confidence 37888876655433 3445679999999999999999998888899999999999997653 34577778888
Q ss_pred HHhhh
Q 020902 288 GTFLL 292 (320)
Q Consensus 288 Gv~lL 292 (320)
|++.+
T Consensus 102 GVi~l 106 (109)
T PRK10650 102 GMVMI 106 (109)
T ss_pred HHHHh
Confidence 98887
No 53
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.29 E-value=0.033 Score=53.98 Aligned_cols=124 Identities=22% Similarity=0.192 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC--------------Cc----cCCCccccccchhHHHHHHHHHHHH
Q 020902 5 SDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTG--------------TR----AGSGGYSYLYEPWWWAGMITMIVGE 66 (320)
Q Consensus 5 ~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~--------------~~----~~~~~~~~~~~p~w~~G~~l~~~g~ 66 (320)
++..+|=++++.|++++|+..++||+-.++.+... +. +..+..+.- +.|-.+ .+++...
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~--w~~~~~-~~~v~~~ 240 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIH--WTSQVI-GLLVGYA 240 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccC--CChhhH-HHHHHHH
Confidence 46789999999999999999999999766543210 00 000111211 112111 1222222
Q ss_pred HHHHHHHhhcchhh-------hhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcc
Q 020902 67 IANFAAYAFAPAIL-------VTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERT 131 (320)
Q Consensus 67 ~~~~~al~~~p~sl-------v~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~ 131 (320)
++.+.-+...|..+ +.-=...+-++++++..++.|+++++.-++|.++|++|.++.....+++++
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 34444444444432 222234457889999999999999999999999999998888765554443
No 54
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=95.96 E-value=0.064 Score=50.37 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=58.0
Q ss_pred HHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 020902 225 CLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDSP 302 (320)
Q Consensus 225 ~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~ 302 (320)
.+.| ..+-++.++-..+...|+-...--+.+.+.|+++|+||.... ++..=.+++++++.|+++-+.+++.++++
T Consensus 56 ~iGq-~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~--~~~~G~~Al~liiiGv~lts~~~~~~~~~ 130 (269)
T PF06800_consen 56 AIGQ-IGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTT--QKIIGFLALVLIIIGVILTSYQDKKSDKS 130 (269)
T ss_pred HHHH-HHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 3444 333456777778889999999999999999999999998754 56666678889999999888766665543
No 55
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.64 E-value=0.1 Score=48.46 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CC--------------CccCCCccccccchh-HHHHHHHHHHH----H
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGT-TG--------------TRAGSGGYSYLYEPW-WWAGMITMIVG----E 66 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~-~~--------------~~~~~~~~~~~~~p~-w~~G~~l~~~g----~ 66 (320)
-..|+.+|+.+..|-+.=.+.-||..+..+- .+ ....+ -..-+.+|. -..++..-+++ +
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~-ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQ-AGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhh-cchhhcChHHHHHHHHHHHHhcccch
Confidence 4579999999999988877777776532211 00 00001 123333444 34444444444 4
Q ss_pred HHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 67 IANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 67 ~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
.+..+|++-.|-..-.-+.++.-.+.++.+..+|||++|..||.|+.+++.++........
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 5899999999999999999999999999999999999999999999999998776554333
No 56
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.58 E-value=0.11 Score=40.88 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCC
Q 020902 209 FVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQ 270 (320)
Q Consensus 209 ~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~ 270 (320)
++++.++...+. +...-.+++.+++++-|..+.+|+....-++...+.|..+|+|..+.
T Consensus 26 ~~~~~~~~~~~~---~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~ 84 (93)
T PF00893_consen 26 FTQLIPTILAVV---GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSL 84 (93)
T ss_dssp --------HHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred hcchhhHHHHHH---HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 566665554332 34556689999999999999999999999999999999999997654
No 57
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.57 E-value=1.2 Score=43.63 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=54.2
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCc
Q 020902 71 AAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHER 130 (320)
Q Consensus 71 ~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~ 130 (320)
.||++..++-..=+.+.+=+|++.++..+.+||+|..+.+++.+.+.|++++.....+.+
T Consensus 178 aALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 178 AALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 679999999999999999999999999999999999999999999999988877655443
No 58
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.42 E-value=0.098 Score=49.35 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEe
Q 020902 54 WWWAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLH 125 (320)
Q Consensus 54 ~w~~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~ 125 (320)
....=.++++.|+.+..++|-....|--|-+=+.-++|+.+++.-+||++++.++|+|+..+..|++.+...
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 344456889999999999999999999999999999999999999999999999999999999998888665
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.42 E-value=0.029 Score=53.01 Aligned_cols=115 Identities=20% Similarity=0.138 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC--cc-----CC----Ccc---ccccchhHH----HHHHHHHHHHHH
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGT--RA-----GS----GGY---SYLYEPWWW----AGMITMIVGEIA 68 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~--~~-----~~----~~~---~~~~~p~w~----~G~~l~~~g~~~ 68 (320)
...|++.+++++++++.-...-|+.. ..+.... .. +. ... +...++.++ .|+. ..+++.+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAFG-VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcC-CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 35699999999999988887777542 1111100 00 00 000 111122333 4444 5677888
Q ss_pred HHHHHh-hcchhhhhcchhhHHHHHHHHHHHHhcccccccch----hhHHHHhhhheeeE
Q 020902 69 NFAAYA-FAPAILVTPLGALSIIFSAVLAHFILREKLHIFGM----LGCALCVVGSVSIV 123 (320)
Q Consensus 69 ~~~al~-~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~----~g~~li~~G~~~~~ 123 (320)
.+.+.. ..+.+...++.....+.+.+.+.+++||+.+++++ +|.++++.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 888888 99999999999999999999999999999999999 99999999987664
No 60
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=95.30 E-value=0.31 Score=39.20 Aligned_cols=66 Identities=20% Similarity=0.237 Sum_probs=48.1
Q ss_pred HHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 020902 227 LQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGD 300 (320)
Q Consensus 227 ~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~ 300 (320)
.+......|+++.+ ..+. ......++++.+.|.++|+|..+ +. ...|.+++.+|++++..++..++
T Consensus 47 ~~~~~~~~a~~~~~-~~v~-~i~~~~pi~~~ll~~~~~~er~~--~~----~~~a~~l~~~Gv~li~~~~~~~~ 112 (113)
T PF13536_consen 47 VAYLLFFYALSYAP-ALVA-AIFSLSPIFTALLSWLFFKERLS--PR----RWLAILLILIGVILIAWSDLTGA 112 (113)
T ss_pred HHHHHHHHHHHhCc-HHHH-HHHHHHHHHHHHHHHHHhcCCCC--HH----HHHHHHHHHHHHHHHhhhhcccC
Confidence 34555567888888 4555 45557999999999999999654 33 44577788899999987665543
No 61
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.49 Score=44.62 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc-chhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCc
Q 020902 53 PWWWAGMITMIVGEIANFAAYAFA-PAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHER 130 (320)
Q Consensus 53 p~w~~G~~l~~~g~~~~~~al~~~-p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~ 130 (320)
+.|..=+.++..-++.|=.|+.+- |.-+=--+=+.+++.|+++++.++|+|-+.+++..++++.+|+++...++.++.
T Consensus 65 k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 65 KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 456666677777778888888775 444444567889999999999999999999999999999999998877766554
No 62
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.91 E-value=0.058 Score=50.81 Aligned_cols=117 Identities=15% Similarity=0.197 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc-------C----------CCcccccc----------c--hhHHH
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRA-------G----------SGGYSYLY----------E--PWWWA 57 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~-------~----------~~~~~~~~----------~--p~w~~ 57 (320)
...|.++++.++++.++..++.||-.++.+.+.... + .+...... + ..|..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 467999999999999999999998644211110000 0 00000000 0 11211
Q ss_pred HHHH----HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 58 GMIT----MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 58 G~~l----~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
+... +......++.+++..+.+...-.+.+.-+++.+++.++++|+++..+++|.++++.|+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 2111 12222345567888888888888888889999999999999999999999999999987653
No 63
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=94.80 E-value=0.22 Score=41.59 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc----cCCCC----------------------ccCC---Ccccccc-----chhH
Q 020902 10 GFVLAVSSSIFIGSSFIIKKKGLKKA----GTTGT----------------------RAGS---GGYSYLY-----EPWW 55 (320)
Q Consensus 10 Gv~lal~~a~~~a~g~vlqk~~~~~~----~~~~~----------------------~~~~---~~~~~~~-----~p~w 55 (320)
|.++++.|+++.++=.+++|+..++. ++.+. +... ...+..+ .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999977663 11100 0000 0001111 1122
Q ss_pred HHHHHH-H---HHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 56 WAGMIT-M---IVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 56 ~~G~~l-~---~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
+.-+.. - ..-+..++..+.......-+-++..--+.+.+++..+++|+++.+++.|.++.+.|....
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 211111 2 233344555566666666777788888999999999999999999999999999997753
No 64
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.78 E-value=0.9 Score=40.95 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhhhccCCC-----------CccCCCccccccc--h--hHHHHHHHHHHHHHHHHHHHhhcchhhhhcc
Q 020902 20 FIGSSFIIKKKGLKKAGTTG-----------TRAGSGGYSYLYE--P--WWWAGMITMIVGEIANFAAYAFAPAILVTPL 84 (320)
Q Consensus 20 ~~a~g~vlqk~~~~~~~~~~-----------~~~~~~~~~~~~~--p--~w~~G~~l~~~g~~~~~~al~~~p~slv~pl 84 (320)
++...-++||..-||++..- .+.|...+.+++| | -.|. ...-....||.....+.+..+
T Consensus 12 ~~~~~~~ldkL~qRRe~N~ilGhmE~~R~FGe~kG~nik~~~~~taPF~i~Wt------~aNY~Yl~AL~~is~s~asai 85 (290)
T KOG4314|consen 12 CFGASGILDKLRQRREPNSILGHMECFRIFGEDKGFNIKLFFIRTAPFSIFWT------GANYLYLLALKKISASDASAI 85 (290)
T ss_pred hcccceeHHHHHhcCCCceeechHHHHHHhccccCceeeeeeeeecceEEEEe------cCCcHHHHHHHhcChhhhHHH
Confidence 34555678888777766431 1113233334433 1 1122 233456788999999999999
Q ss_pred hhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEe
Q 020902 85 GALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLH 125 (320)
Q Consensus 85 ~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~ 125 (320)
.++.-.|..+++...||+|+...+++..++.+.|++++.+.
T Consensus 86 ~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 86 FACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred HHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 99999999999999999999999999999999998888664
No 65
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=93.24 E-value=0.25 Score=39.01 Aligned_cols=61 Identities=16% Similarity=0.295 Sum_probs=47.0
Q ss_pred HHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhc
Q 020902 226 LLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLH 293 (320)
Q Consensus 226 l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs 293 (320)
.......+.++++.+++.+.++.+ ..++.+.+.|.++++|..+ .. ...|..+++.|+++++
T Consensus 65 ~~~~~~~~~a~~~~~~~~~~~~~~-~~pv~~~i~~~~~~~e~~~--~~----~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 65 ALAYLLYFYALKYISASIVSILQY-LSPVFAAILGWLFLGERPS--WR----QIIGIILIIIGVVLIS 125 (126)
T ss_pred ehHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHcCCCCC--HH----HHHHHHHHHHHHHHHH
Confidence 444566688999999998888877 7999999999999999764 32 4566677777777653
No 66
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.18 E-value=4.8 Score=37.35 Aligned_cols=225 Identities=13% Similarity=0.098 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCC----CcccCCHH
Q 020902 61 TMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPH----ERTIHSVK 136 (320)
Q Consensus 61 l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~----~~~~~t~~ 136 (320)
-+.++.+.+=-|+.+.|.-.---=-+.--+=.++++..+.|.+-++++..-+++|++|+.++.+.-++ +++..-..
T Consensus 94 sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~G 173 (337)
T KOG1580|consen 94 SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFG 173 (337)
T ss_pred HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchH
Confidence 35555666666777776432111111223455788899999999999999999999999998775332 22223333
Q ss_pred HHHHHhcCchhHHHHHHHHHHHHHHH--HhhcccCCCchHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhH
Q 020902 137 ELWHLATQPGFLVYGGIVLVVVGVLI--FKFVPTHGNSHLIVY-VGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQ 213 (320)
Q Consensus 137 el~~~~~~~~fl~~~~~~~~~~~~l~--~~~~~r~~~~~~~~~-~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~ 213 (320)
|+.-.++- ..-..- ...- .+.+.+++..+++.| -..+.+.-|...+++-..=+.+. ..-+||.
T Consensus 174 ElLL~lSL-------~mDGlT-g~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~y------F~~RhP~ 239 (337)
T KOG1580|consen 174 ELLLILSL-------AMDGLT-GSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFY------FVQRHPY 239 (337)
T ss_pred HHHHHHHH-------Hhcccc-hhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHH------HHHhccH
Confidence 43321110 000000 0000 011111222333333 23444433333322211111110 1236777
Q ss_pred HHHHHH-HHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhh
Q 020902 214 TWIFTV-VVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLL 292 (320)
Q Consensus 214 ~yl~~~-~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lL 292 (320)
.|.=+. ..+.+++.| +|.=+....+.|.. ..+.+.---+++++.++++|+... ++-|| +|.++++.+...=
T Consensus 240 ~~~~l~l~ai~s~LGQ-~fIF~tv~~FgPLt-CSivTTTRKfFTil~SVllf~npl--s~rQw----lgtvlVF~aL~~D 311 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQ-WFIFKTVEEFGPLT-CSIVTTTRKFFTILISVLLFNNPL--SGRQW----LGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHHhhh-HHHHHHHHHhCCee-EEEEeehHHHHHHHHHHHHhcCcC--cHHHH----HHHHHHHHHhhhH
Confidence 655444 344444544 55556666666532 233334455678999999999864 35454 5566666655554
Q ss_pred ccCCCCCCCCCCCCC
Q 020902 293 HKTKDMGDSPSSDSP 307 (320)
Q Consensus 293 s~~~~~~~~~~~~~~ 307 (320)
..+...++-.++..|
T Consensus 312 ~~~GK~a~~t~akkp 326 (337)
T KOG1580|consen 312 VVDGKKAPMTAAKKP 326 (337)
T ss_pred hhcCCcCccccccCC
Confidence 444443333333333
No 67
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=92.87 E-value=0.15 Score=41.07 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=64.7
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhccccc-ccchhhHHHHhhhheee
Q 020902 45 GGYSYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVTPLG-ALSIIFSAVLAHFILREKLH-IFGMLGCALCVVGSVSI 122 (320)
Q Consensus 45 ~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~~~la~~~l~e~~~-~~~~~g~~li~~G~~~~ 122 (320)
+.+.++.|+.+++=+.+.-.|+.+.+.-|+-+|.++..|+. ++++.|+++++..+ +|+.. ++.+.|+.+++.|+.+.
T Consensus 45 e~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 45 EMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccceeehhhhHHhhhhhhe
Confidence 34577888999999999989999999999999999999985 66888999988765 66665 55567999999998765
Q ss_pred E
Q 020902 123 V 123 (320)
Q Consensus 123 ~ 123 (320)
+
T Consensus 124 i 124 (125)
T KOG4831|consen 124 I 124 (125)
T ss_pred e
Confidence 3
No 68
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=92.12 E-value=10 Score=35.50 Aligned_cols=193 Identities=10% Similarity=0.076 Sum_probs=98.8
Q ss_pred HHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCCcccCCHHHHHHHhcCchhHH
Q 020902 70 FAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHERTIHSVKELWHLATQPGFLV 149 (320)
Q Consensus 70 ~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~~~~~t~~el~~~~~~~~fl~ 149 (320)
-.++...|+.+...+.-.+-+....++.+ +.+|.+.+.+.+.|+.++.-.++..++. +|--..
T Consensus 89 Y~si~riPlGiAVAiEF~GPL~vA~~~sR------r~~d~vwvaLAvlGi~lL~p~~~~~~~l-----------Dp~Gv~ 151 (292)
T COG5006 89 YLSIERIPLGIAVAIEFTGPLAVALLSSR------RLRDFVWVALAVLGIWLLLPLGQSVWSL-----------DPVGVA 151 (292)
T ss_pred HHHHHhccchhhhhhhhccHHHHHHHhcc------chhhHHHHHHHHHHHHhheeccCCcCcC-----------CHHHHH
Confidence 35788899998888777776555444432 3467777788888988776554433322 133333
Q ss_pred HHHHHHHHHHHHHHh-hcccCCCc-h---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCccchhhHHHHHHH-HHHH
Q 020902 150 YGGIVLVVVGVLIFK-FVPTHGNS-H---LIVYVGICSAMGSITVMSVKALGIALKLSFSGHNQFVYYQTWIFTV-VVIF 223 (320)
Q Consensus 150 ~~~~~~~~~~~l~~~-~~~r~~~~-~---~~~~~~~~gllg~~s~l~~K~v~~~l~~~~~g~~~~~~~~~yl~~~-~~v~ 223 (320)
|......+-. .|. ..+|-|+. + .+.++. +.++.-++ --++ .+....+.+|..-.... ..+.
T Consensus 152 ~Al~AG~~Wa--~YIv~G~r~g~~~~g~~g~a~gm---~vAaviv~-Pig~-------~~ag~~l~~p~ll~laLgvavl 218 (292)
T COG5006 152 LALGAGACWA--LYIVLGQRAGRAEHGTAGVAVGM---LVAALIVL-PIGA-------AQAGPALFSPSLLPLALGVAVL 218 (292)
T ss_pred HHHHHhHHHH--HHHHHcchhcccCCCchHHHHHH---HHHHHHHh-hhhh-------hhcchhhcChHHHHHHHHHHHH
Confidence 3333222221 232 34444321 1 111111 11111110 0011 02223355555433222 2222
Q ss_pred HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 020902 224 TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTK 296 (320)
Q Consensus 224 ~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 296 (320)
+...--..-+-+|++-++. ..-+..+.++.++.+.|.++++|... +.||....+ .+....|+.+=.|++
T Consensus 219 SSalPYsLEmiAL~rlp~~-~F~~LlSLePa~aAl~G~i~L~e~ls--~~qwlaI~~-ViaAsaG~~lt~~~~ 287 (292)
T COG5006 219 SSALPYSLEMIALRRLPAR-TFGTLLSLEPALAALSGLIFLGETLT--LIQWLAIAA-VIAASAGSTLTARKP 287 (292)
T ss_pred hcccchHHHHHHHhhCChh-HHHHHHHhhHHHHHHHHHHHhcCCCC--HHHHHHHHH-HHHHHhccccccCCC
Confidence 2222323335588877644 56677889999999999999999765 556554433 234455655544443
No 69
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=91.78 E-value=0.63 Score=41.80 Aligned_cols=116 Identities=19% Similarity=0.197 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC------C--------------CccCC--Cccc-ccc-chhHHHHHHH
Q 020902 6 DNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTT------G--------------TRAGS--GGYS-YLY-EPWWWAGMIT 61 (320)
Q Consensus 6 ~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~------~--------------~~~~~--~~~~-~~~-~p~w~~G~~l 61 (320)
+.+.|+.+.+.+.++.+.+.+.|++..++.+.. . .+++. ...+ ... ++.+|.=..+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 456777777788888889999999975543211 0 00000 0001 111 1222322234
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhhee
Q 020902 62 MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVS 121 (320)
Q Consensus 62 ~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~ 121 (320)
...+.++-...++..+-....=...+..+++.+++.++++|+++...|.|+.++..|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 455666666677888888888899999999999999999999999999999999988653
No 70
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=91.77 E-value=3 Score=40.16 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEE
Q 020902 62 MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVL 124 (320)
Q Consensus 62 ~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~ 124 (320)
+.+|-++.-.++...|++..|-+-++..+++.++++++.+|+.++..+...+.++.|+.+-..
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 346777788899999999999999999999999999999999999999999999988765544
No 71
>PRK13499 rhamnose-proton symporter; Provisional
Probab=89.33 E-value=1.9 Score=42.07 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=49.6
Q ss_pred hHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHHHHhhhcc
Q 020902 233 NKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDS-QNTSQIVTELCGFVTILSGTFLLHK 294 (320)
Q Consensus 233 n~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~-~~~~~~~~~~~G~~l~i~Gv~lLs~ 294 (320)
-++.+.--.+.-.|+..-.-.+.+.+.|.++++|+.. .+..+......|.++++.|+.+-++
T Consensus 91 ~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 91 GLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677789999999999999999999999971 1123555578899999999999988
No 72
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=85.73 E-value=4.8 Score=32.42 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=36.5
Q ss_pred hcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCC
Q 020902 82 TPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPH 128 (320)
Q Consensus 82 ~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~ 128 (320)
+.-+.+-++.++.-.+..-|.|+++.||+|...+..|+.++ .++|.
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vi-l~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVI-LFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeee-EeCCC
Confidence 44566677788888888999999999999999999995554 44554
No 73
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=85.53 E-value=4.1 Score=33.36 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=42.0
Q ss_pred hHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 020902 233 NKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFL 291 (320)
Q Consensus 233 n~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~l 291 (320)
.-.|.+.|-+..+|+.+...-+++++.|..+.+|..+-. -..|..++++|+.+
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 457888999999999999999999999977777764422 35788888888765
No 74
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=83.96 E-value=2.2 Score=39.78 Aligned_cols=221 Identities=14% Similarity=0.219 Sum_probs=120.3
Q ss_pred ccchhHHHHHHH---HHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhcccccccch----hhHHHHhhhhee
Q 020902 50 LYEPWWWAGMIT---MIVGEIANFAAYAFAPAILVTPLG-ALSIIFSAVLAHFILREKLHIFGM----LGCALCVVGSVS 121 (320)
Q Consensus 50 ~~~p~w~~G~~l---~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~~~la~~~l~e~~~~~~~----~g~~li~~G~~~ 121 (320)
..-..|++|++- -.+|...|+=|......|...|+. +..++-+.+++.+.+||=-+..+. ++.+++++|+.+
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 334567777754 356777788888889999999996 567899999999999998887765 477888899887
Q ss_pred eEEecCCCcccCCHHHHHHHhcCchhHHHHHHHHHHHHH--HHHhhcccCCCchHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 020902 122 IVLHAPHERTIHSVKELWHLATQPGFLVYGGIVLVVVGV--LIFKFVPTHGNSHLIVYVGICSAMGSITVMSVKALGIAL 199 (320)
Q Consensus 122 ~~~~~~~~~~~~t~~el~~~~~~~~fl~~~~~~~~~~~~--l~~~~~~r~~~~~~~~~~~~~gllg~~s~l~~K~v~~~l 199 (320)
-....+++.+..+.+++.+-. +.+...-+ ..|.+..|. +- +.+.++++-++++-.+
T Consensus 134 Ts~~~~~nk~~~~~~n~kkgi----------~~L~iSt~GYv~yvvl~~~-----f~-------v~g~saiLPqAiGMv~ 191 (288)
T COG4975 134 TSKQDRNNKEEENPSNLKKGI----------VILLISTLGYVGYVVLFQL-----FD-------VDGLSAILPQAIGMVI 191 (288)
T ss_pred eeeeccccccccChHhhhhhe----------eeeeeeccceeeeEeeecc-----cc-------ccchhhhhHHHHHHHH
Confidence 776555444444544444311 11110000 011112221 00 1223333333222111
Q ss_pred H---HHhcCCccchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHH
Q 020902 200 K---LSFSGHNQFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIV 276 (320)
Q Consensus 200 ~---~~~~g~~~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~ 276 (320)
- ....+.+-..+-.+|.-+...+.-+..-+.++-.+=+.+-++ ...+-|.. .+.+.++|+.+++|... ..++.
T Consensus 192 ~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt-~FSlSQlg-ViisTiGGIl~L~ekKt--kkEm~ 267 (288)
T COG4975 192 GALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVAT-SFSLSQLG-VIISTIGGILFLGEKKT--KKEMV 267 (288)
T ss_pred HHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceee-eeeHhhhe-eeeeecceEEEEeccCc--hhhhh
Confidence 0 011122233444445544433222222222221111222211 11111111 12466799999999764 77899
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 020902 277 TELCGFVTILSGTFLLHKTK 296 (320)
Q Consensus 277 ~~~~G~~l~i~Gv~lLs~~~ 296 (320)
..+.|.++++.|.++|.--|
T Consensus 268 ~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 268 YVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred hhhhhHHHHHHHhhhhheec
Confidence 99999999999999887544
No 75
>PRK02237 hypothetical protein; Provisional
Probab=83.44 E-value=4.5 Score=32.79 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=35.8
Q ss_pred cchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 83 PLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 83 pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
.-+.+-++.+++-.+..-|+|+++.|++|..++.+|+.++. ++|
T Consensus 64 AYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~-~~p 107 (109)
T PRK02237 64 AYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM-YAP 107 (109)
T ss_pred HhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe-ecC
Confidence 34556677777889999999999999999999999987664 344
No 76
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=82.91 E-value=2.5 Score=40.99 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 71 AAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 71 ~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
.++...+.....-.+.+--++..+++.+++||+++..+++|.++++.|+.+.
T Consensus 295 ~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 295 YCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 4566666666666666777899999999999999999999999999998754
No 77
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=81.84 E-value=1.3 Score=41.25 Aligned_cols=62 Identities=21% Similarity=0.397 Sum_probs=49.9
Q ss_pred HhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCC
Q 020902 234 KALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKD 297 (320)
Q Consensus 234 ~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~ 297 (320)
+|.+.-..+...|+-.-..-+.+.+.|+.+|+||.+. .+...=..+.++++.|+++=+.+++
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~--~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTP--TQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcc--hhHHHHHHHHHHHHHhheEeeeecc
Confidence 5777777888899999888899999999999999874 3666555677888999998765554
No 78
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=81.63 E-value=55 Score=31.96 Aligned_cols=286 Identities=14% Similarity=0.201 Sum_probs=143.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-----C-------Cc-----cCCCccccccc----hhHHHHH--
Q 020902 3 ISSDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTT-----G-------TR-----AGSGGYSYLYE----PWWWAGM-- 59 (320)
Q Consensus 3 ~~~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~-----~-------~~-----~~~~~~~~~~~----p~w~~G~-- 59 (320)
|.++..+|++...+++++.+.=.+=.||-..=+=+. + +- .-.+..+++++ -.|+.-+
T Consensus 1 m~~~ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 1 MNSAIILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred CCchHHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 677889999999999999777666555521100000 0 00 00011122221 1222111
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhcch-hhHHHHHHHHHHHHhcc-------cccccchhhHHHHhhhheeeEEecCCCcc
Q 020902 60 ITMIVGEIANFAAYAFAPAILVTPLG-ALSIIFSAVLAHFILRE-------KLHIFGMLGCALCVVGSVSIVLHAPHERT 131 (320)
Q Consensus 60 ~l~~~g~~~~~~al~~~p~slv~pl~-~~~lv~~~~la~~~l~e-------~~~~~~~~g~~li~~G~~~~~~~~~~~~~ 131 (320)
.+-.+|.+..=.+.++.-+|+.+.+. .+..++..++-..+.++ +-.+..++|++++.+|+.+....+...+.
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~ 160 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEK 160 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhh
Confidence 11234444444566677777766653 34445555555555432 22345567999999999988776543222
Q ss_pred cCCHHHHHHHhcCchhHHHHHHHHHHHHHHHHhh-cc--------cCCCchHHHHHH----HHHhhhHHHHHHHHHHHHH
Q 020902 132 IHSVKELWHLATQPGFLVYGGIVLVVVGVLIFKF-VP--------THGNSHLIVYVG----ICSAMGSITVMSVKALGIA 198 (320)
Q Consensus 132 ~~t~~el~~~~~~~~fl~~~~~~~~~~~~l~~~~-~~--------r~~~~~~~~~~~----~~gllg~~s~l~~K~v~~~ 198 (320)
+.+ +|-.+.--+.. +.-.++..+.....-+-. .. ..|... .|.. .--+.||+..=+.=++-..
T Consensus 161 ~~~-~~~~efn~~kG-l~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~--l~~~l~~~vvv~~GGf~tN~~yc~~~l 236 (344)
T PF06379_consen 161 ELG-EEAKEFNFKKG-LIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNP--LYANLPVYVVVLWGGFITNLIYCLILL 236 (344)
T ss_pred hhc-cchhhhhhhhh-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCc--HHHhCchhhhhhhhHHHHHHHHHHHHH
Confidence 222 11122111111 111122222221111101 11 112111 1111 1112344433333333322
Q ss_pred HHH-Hhc--CCccc-hhh--HHHHHHHHHHHHHHHHHHHHhHhhcccC---ceeechhHHHHHHHHHHHHHHHHhcccCC
Q 020902 199 LKL-SFS--GHNQF-VYY--QTWIFTVVVIFTCLLQINYLNKALDTFN---TAVISPVYYVMFTTLTIVASIIMFKDWDS 269 (320)
Q Consensus 199 l~~-~~~--g~~~~-~~~--~~yl~~~~~v~~~l~Q~~~ln~aL~~~~---a~~v~P~~~v~~~~~~i~~G~i~f~E~~~ 269 (320)
.+. ..+ ++... +++ .-|++.+..-..=..|+.+...+=.+-. ....-++...+..+++.+.| +.++||.+
T Consensus 237 ~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwG-l~lkEWKg 315 (344)
T PF06379_consen 237 AKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWG-LILKEWKG 315 (344)
T ss_pred hhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence 221 111 11111 222 2255555555566779988877554332 24567777777788888877 56899999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhc
Q 020902 270 QNTSQIVTELCGFVTILSGTFLLH 293 (320)
Q Consensus 270 ~~~~~~~~~~~G~~l~i~Gv~lLs 293 (320)
.+....-.+.+|+.+++..+.++.
T Consensus 316 ~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 316 ASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHh
Confidence 998888888999998888887764
No 79
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=80.77 E-value=21 Score=31.80 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHh
Q 020902 228 QINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTF 290 (320)
Q Consensus 228 Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~ 290 (320)
|-.+.+..+++.|++ ..-+......+.+.+.+..+|+|... .. ...|..+++.|++
T Consensus 165 ~~~~v~~vlk~~~~~-~~~~~~~~~~~~s~lls~~~f~~~ls--~~----~~~g~~lV~~~~~ 220 (222)
T TIGR00803 165 GGLCIGGVVRYADNT-TKSFVTALSIILSTLASVRLFDAKIS--ST----FYLGAILVFLATF 220 (222)
T ss_pred cCceeeehhHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCcc--HH----HHHHHHHHHeeeE
Confidence 444577788888877 66777788888899999999998654 22 4456666665554
No 80
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=76.70 E-value=13 Score=35.11 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCcc--------------------CCCc----cccccchhHHHHHHH-H
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRA--------------------GSGG----YSYLYEPWWWAGMIT-M 62 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~--------------------~~~~----~~~~~~p~w~~G~~l-~ 62 (320)
..|+++.+++-++.+.-.+.|+|-.++.+++..+. ..+. .-....|..+.-+.+ .
T Consensus 153 ~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s 232 (303)
T PF08449_consen 153 ALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS 232 (303)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH
Confidence 44999999999999999999999766544331100 0000 011123433333332 2
Q ss_pred HHHHHHHHHHH---hhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 63 IVGEIANFAAY---AFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 63 ~~g~~~~~~al---~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
..+.+++.... +.-......-+..+--+++.+++.++.+++++..+|.|..++..|..+-
T Consensus 233 ~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 233 LTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 33444333222 2223333444555566788999999999999999999999999997654
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=76.10 E-value=18 Score=34.52 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=44.1
Q ss_pred HhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 020902 234 KALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDS 301 (320)
Q Consensus 234 ~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~ 301 (320)
-|+...+++++.|+- +.-.+.+.+.+-.+++|..+.. -..|+.+++.|+.++....+++++
T Consensus 69 ~Al~~ap~slv~Plg-~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~~~~~~ 129 (300)
T PF05653_consen 69 VALGFAPASLVAPLG-ALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFAPKEEP 129 (300)
T ss_pred HHHHhhhHHHHHHHH-hhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeCCCCCC
Confidence 477777888888886 5566678888889999977632 246778888888877655544433
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=71.75 E-value=22 Score=32.82 Aligned_cols=86 Identities=15% Similarity=0.107 Sum_probs=59.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHH
Q 020902 208 QFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILS 287 (320)
Q Consensus 208 ~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~ 287 (320)
.+.+|..++........-..|......++++-|++ ++-+..-..++++.+....+++.... ..|| .++.++.+
T Consensus 10 ~~~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~-t~qvl~q~kIl~TAl~s~~~L~r~ls--~~qW----~aL~lL~~ 82 (244)
T PF04142_consen 10 VWKSPKDTLKLAVPALLYAIQNNLQFVALSYLDPS-TFQVLSQSKILFTALFSVLLLKRRLS--RRQW----LALFLLVA 82 (244)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhhHHHHHHHHHHHHHHcccc--hhhH----HHHHHHHH
Confidence 34555555555565566677999999999999977 44555556788888889999988654 4454 44556677
Q ss_pred HHhhhccCCCCCC
Q 020902 288 GTFLLHKTKDMGD 300 (320)
Q Consensus 288 Gv~lLs~~~~~~~ 300 (320)
|+.+....+..++
T Consensus 83 Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 83 GVVLVQLSSSQSS 95 (244)
T ss_pred HHheeecCCcccc
Confidence 8887765555543
No 83
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=71.24 E-value=4.8 Score=32.57 Aligned_cols=43 Identities=26% Similarity=0.509 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 84 LGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 84 l~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
-+.+-++.+++-.+.+-|+|.++.|++|..++..|+.++.. +|
T Consensus 63 YGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~-~P 105 (107)
T PF02694_consen 63 YGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF-AP 105 (107)
T ss_pred hhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe-cC
Confidence 35556777888899999999999999999999999877643 44
No 84
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=68.99 E-value=46 Score=33.27 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=42.7
Q ss_pred hhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC---C----------CcccCCHHHHHHHhcCchh
Q 020902 81 VTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP---H----------ERTIHSVKELWHLATQPGF 147 (320)
Q Consensus 81 v~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~---~----------~~~~~t~~el~~~~~~~~f 147 (320)
+.-.|+++......++-++.....+..-|++....++=..++....| + +.+..+.+|+.++++.+.|
T Consensus 143 ~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~f 222 (412)
T PF01306_consen 143 ARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNF 222 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHH
T ss_pred HHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhH
Confidence 45568888988888888887766666667655432221112111111 0 1123355688999999998
Q ss_pred HHHHHHHHH
Q 020902 148 LVYGGIVLV 156 (320)
Q Consensus 148 l~~~~~~~~ 156 (320)
..+.+.+..
T Consensus 223 w~~~l~v~g 231 (412)
T PF01306_consen 223 WFFVLFVIG 231 (412)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 765554443
No 85
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=67.15 E-value=2.5 Score=39.60 Aligned_cols=60 Identities=25% Similarity=0.515 Sum_probs=51.2
Q ss_pred HHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCC
Q 020902 70 FAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHE 129 (320)
Q Consensus 70 ~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~ 129 (320)
.-|+....+.-++-+-+-+.+-.+++++++||-|-+..++.|++.|+.|+++++...-+.
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 456777777888889999999999999999999999999999999999998887654343
No 86
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=65.79 E-value=5.5 Score=32.16 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHhcccccccchhhHHHHhhhhee
Q 020902 86 ALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVS 121 (320)
Q Consensus 86 ~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~ 121 (320)
++++..-.+++.+++||++++....|-++++.++..
T Consensus 70 vitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 70 VITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 345555678899999999999999999988766543
No 87
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=64.78 E-value=61 Score=31.23 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecCCC
Q 020902 62 MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAPHE 129 (320)
Q Consensus 62 ~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~~~ 129 (320)
..++.-++.-||.+..--...=-=+.=++-.++++.++-|+|.+.+|.+-..+|..|+.++..+.+.+
T Consensus 93 n~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 93 NTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 45677788888888764433323345577888999999999999999999999999999998875554
No 88
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.22 E-value=6.9 Score=31.29 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=59.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHH---HHHhhcchh
Q 020902 3 ISSDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANF---AAYAFAPAI 79 (320)
Q Consensus 3 ~~~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~---~al~~~p~s 79 (320)
.|+.+...+++-+.|..++..+- +|+.+...++ .-..---.|-+.+.=+.+..-.|= ..|+.+.+-
T Consensus 4 ~~~~~l~~vlLL~~SNvFMTFAW----YghLk~~~~p-------l~~~i~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK 72 (116)
T COG3169 4 PMSVYLYPVLLLIGSNVFMTFAW----YGHLKFTNKP-------LVIVILASWGIAFFEYLLQVPANRIGHQVYSAAQLK 72 (116)
T ss_pred CCchHHHHHHHHHhhHHHHHHHH----HHHHhccCCc-------hhHHHHHHhhHHHHHHHHhCccchhhhhhccHHHHH
Confidence 46667778888888888876654 4544432110 000001122222222222111111 123333333
Q ss_pred hhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheee
Q 020902 80 LVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSI 122 (320)
Q Consensus 80 lv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~ 122 (320)
..| ..+++.+-.++|.+++||+++...+.|..++..|+.++
T Consensus 73 ~mQ--EVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 73 TMQ--EVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHH--HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 444 34566777889999999999999999999888776543
No 89
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=60.90 E-value=65 Score=31.97 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=83.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCcc-----------------------CCCccccccc----hhHH
Q 020902 5 SDNVHGFVLAVSSSIFIGSSFIIKKKGLKKAG-TTGTRA-----------------------GSGGYSYLYE----PWWW 56 (320)
Q Consensus 5 ~~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~-~~~~~~-----------------------~~~~~~~~~~----p~w~ 56 (320)
+...+|-++|+.||++|++=.++.||-..++. +-+... +.+..++-.+ -...
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 34578999999999999999999998765552 221100 0000011111 1123
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 57 AGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 57 ~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
.|.+.-+++--+|..|......-++.-=.++++..+++.=..+-+.+.+...++|...|.+|-+++.....
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 45555566677888887776666666666777888888777777999999999999999999777655443
No 90
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=55.79 E-value=20 Score=27.11 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.9
Q ss_pred ceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHH
Q 020902 241 TAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGT 289 (320)
Q Consensus 241 a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv 289 (320)
...++|+.|++-.++..+.+..-+.+..+-++..+...+.++...+-|.
T Consensus 13 ~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~ 61 (76)
T PF11970_consen 13 SMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGF 61 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCH
Confidence 4578999999999999999999988555555555566666666665554
No 91
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=54.59 E-value=1.1e+02 Score=27.42 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHHHH---Hhhcchhhhhcc-
Q 020902 9 HGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANFAA---YAFAPAILVTPL- 84 (320)
Q Consensus 9 iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~a---l~~~p~slv~pl- 84 (320)
.|++--++.++..+++.-+..+-.-|... .--+||.||=++....+..++|+.. -.+.|.|+=.-+
T Consensus 125 ~GlItlll~a~vgGfamy~my~y~yr~~a----------d~sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~ 194 (226)
T COG4858 125 YGLITLLLTAVVGGFAMYIMYYYAYRMRA----------DNSQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLP 194 (226)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhc----------ccccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCc
Confidence 45555556666655555444442222211 1224788898888877777777654 467787764333
Q ss_pred -hhhHHHHHHHHH-HHHhcccccccc
Q 020902 85 -GALSIIFSAVLA-HFILREKLHIFG 108 (320)
Q Consensus 85 -~~~~lv~~~~la-~~~l~e~~~~~~ 108 (320)
-++.++-..+++ ++++|+|.+.+.
T Consensus 195 pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 195 PIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334444444454 566788877553
No 92
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=54.42 E-value=33 Score=28.78 Aligned_cols=54 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHhhcchhhhhc-chhhHHHHHHHHHHH----HhcccccccchhhHHHHhhhhee
Q 020902 68 ANFAAYAFAPAILVTP-LGALSIIFSAVLAHF----ILREKLHIFGMLGCALCVVGSVS 121 (320)
Q Consensus 68 ~~~~al~~~p~slv~p-l~~~~lv~~~~la~~----~l~e~~~~~~~~g~~li~~G~~~ 121 (320)
.+.........+...- ...-+++.++++-++ .-|+|++.++.+|..+++.|+.+
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 4444444433333333 333445566666665 45789999999999999999753
No 93
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.88 E-value=11 Score=35.92 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhh
Q 020902 62 MIVGEIANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGS 119 (320)
Q Consensus 62 ~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~ 119 (320)
++++-..+-..|++.|++.=+-==++..+|+.+++..+||+|-+..-..++.+|+.|-
T Consensus 112 fi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 112 FILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred eeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 4444456777889999988888889999999999999999999999888888888883
No 94
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=48.59 E-value=1.4e+02 Score=28.56 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=42.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Q 020902 209 FVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCG 281 (320)
Q Consensus 209 ~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G 281 (320)
.++|..+............|-.-.=.|..++...- ..+-|-..|.++++.|.++|+|..+ ..|++...++
T Consensus 66 ~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~le-aSLGY~InPL~~VllG~lflkErls--~~Q~iAV~lA 135 (293)
T COG2962 66 LKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLE-ASLGYFINPLVNVLLGRLFLKERLS--RLQWIAVGLA 135 (293)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhH-HHhHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHH
Confidence 46676666655544444555544434444433221 2345556778899999999999765 6666655443
No 95
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=45.48 E-value=91 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=23.6
Q ss_pred HHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCC
Q 020902 230 NYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDS 269 (320)
Q Consensus 230 ~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~ 269 (320)
.+...|+++.++....-+ +...|+...+.+..+++|..+
T Consensus 85 ~~~~~a~~~~~~~~a~~l-~~~~Pi~~~lla~~~l~Ek~~ 123 (256)
T TIGR00688 85 WLFIWAVNNGSSLEVSLG-YLINPLVMVALGRVFLKERIS 123 (256)
T ss_pred HHHHHHHHcchHHHHHHH-HHHHHHHHHHHHHHHHhcCCC
Confidence 344556666554433333 345777788888888888654
No 96
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=44.37 E-value=22 Score=29.57 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccC
Q 020902 258 VASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKT 295 (320)
Q Consensus 258 ~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~ 295 (320)
+.-+.+|=-..+-++|.+.++++.++++++|+++|.|+
T Consensus 20 LEemlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 20 LEEMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred HHHHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 34445333334556899999999999999999999875
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=42.49 E-value=20 Score=33.40 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEecC
Q 020902 88 SIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLHAP 127 (320)
Q Consensus 88 ~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~~~ 127 (320)
-=.|+.+.+.++++.+++.|+|+|+.++..+...-+..+.
T Consensus 277 RKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 277 RKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 3478999999999999999999999999999877666554
No 98
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=40.14 E-value=3.6e+02 Score=26.22 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHHHHHHhhcchhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeEEe
Q 020902 67 IANFAAYAFAPAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLH 125 (320)
Q Consensus 67 ~~~~~al~~~p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~ 125 (320)
.++=+++.+.|+|+=.-.=+.+++|.++|+..+==||+++.-..=+.+|.+|+.+..+.
T Consensus 99 GLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 99 GLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred ccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 35567889999999999999999999999999988999888777888888888777663
No 99
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.78 E-value=2.1e+02 Score=25.39 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=30.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH---Hhhcchhh---hhcchhhHHHHHHHHHHHHhccccccc
Q 020902 52 EPWWWAGMITMIVGEIANFAA---YAFAPAIL---VTPLGALSIIFSAVLAHFILREKLHIF 107 (320)
Q Consensus 52 ~p~w~~G~~l~~~g~~~~~~a---l~~~p~sl---v~pl~~~~lv~~~~la~~~l~e~~~~~ 107 (320)
++.||-.+...++..+.|+.. .++.|..+ +.|...+-+-..+...++++|.|.+.+
T Consensus 143 r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~~i~ 204 (206)
T PF06570_consen 143 RPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKYNIT 204 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555554444444444433 33455553 444444444455667788888887654
No 100
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=34.80 E-value=3.8e+02 Score=25.49 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHHHHHhh-----cchhhhh
Q 020902 8 VHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANFAAYAF-----APAILVT 82 (320)
Q Consensus 8 ~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~-----~p~slv~ 82 (320)
..++...+++....-++....|+|.++..+.+.+- ..-..-...-.+|..+..+|.+..+.++.. .-...-.
T Consensus 46 ~~~i~~~ii~lvl~iia~~~lr~GF~~L~~~~~~~---~iG~tG~~Lilig~il~iig~i~~i~~~~~~~~~~~l~~ig~ 122 (285)
T PF06157_consen 46 IVAIISLIIGLVLGIIAFYRLRRGFRILSSYDRDV---GIGKTGATLILIGYILIIIGAILAIISLFSILAGLILLLIGA 122 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc---cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777778888877655322110 012222334456666666666654432111 1111111
Q ss_pred cchhhHHHHHHHHHHHHhcccccccc-hhhHHHHhhh
Q 020902 83 PLGALSIIFSAVLAHFILREKLHIFG-MLGCALCVVG 118 (320)
Q Consensus 83 pl~~~~lv~~~~la~~~l~e~~~~~~-~~g~~li~~G 118 (320)
.+.-.+.++-. .+.+-++|+.+... ..|..+++++
T Consensus 123 il~~IG~ILlg-i~~yrlG~~y~~~~ikvgGIL~ii~ 158 (285)
T PF06157_consen 123 ILAFIGYILLG-IGLYRLGSRYNNGLIKVGGILIIIP 158 (285)
T ss_pred HHHHHHHHHHH-HHHHHHhhhhccCceehhhHHHHHH
Confidence 22233333332 45666667665444 2344444444
No 101
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=34.07 E-value=2.5e+02 Score=22.71 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 020902 213 QTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFL 291 (320)
Q Consensus 213 ~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~l 291 (320)
..+..++............--..+++.+|. ..-+...+..+..++.|.++|+|. .++. -..|..+.+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~l-t~~v~~~~K~~~~i~~s~~~f~~~--~t~~----~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPL-TYSVLGNVKRILVILLSVIFFGEP--ITPL----QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChh-HHHHHHHHHHHHHHHHHhhhcCCc--CCHH----HHHHHHHHHHHHhe
Confidence 444433333323333333334455555443 566777888889999999999987 3443 44666667777654
No 102
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=33.98 E-value=1.7e+02 Score=26.74 Aligned_cols=59 Identities=17% Similarity=0.298 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCc-cCCCcc------ccccchhHHHHHHHHHHHH
Q 020902 7 NVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTTGTR-AGSGGY------SYLYEPWWWAGMITMIVGE 66 (320)
Q Consensus 7 ~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~~~~-~~~~~~------~~~~~p~w~~G~~l~~~g~ 66 (320)
-++|+.+.+++-.+-++++ .||+..++.+++..+ -.++.. +|+..-.+|.|+.++..+.
T Consensus 121 ~~~g~~l~~~g~~~E~~AD-~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~ 186 (235)
T PF06966_consen 121 DILGIALFLIGFLLETVAD-QQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999 566666665543211 011234 4444556677777776554
No 103
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.33 E-value=2.3e+02 Score=21.69 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=16.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHH
Q 020902 47 YSYLYEPWWWAGMITMIVGEIANF 70 (320)
Q Consensus 47 ~~~~~~p~w~~G~~l~~~g~~~~~ 70 (320)
...+|||.||++++..++-.+-++
T Consensus 5 KvR~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 5 KVRFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred hhcccCHHHHHHHHHHHHHHHHHH
Confidence 356799999999887655444443
No 104
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=29.80 E-value=1.8e+02 Score=27.13 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHH-----HhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 020902 249 YVMFTTLTIVASII-----MFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMG 299 (320)
Q Consensus 249 ~v~~~~~~i~~G~i-----~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~ 299 (320)
+-+|..++++.|-. +|++..+ .+..-++=.+|..++++|..+.+.-|+++
T Consensus 85 ~liW~s~n~l~Gw~~grfGlFg~~~~-~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 85 MLIWGSVNCLTGWASGRFGLFGLDPQ-VPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHhhceecccccc-ccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 34566666776655 5766544 34455566677777777777665544444
No 105
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=29.04 E-value=1.9e+02 Score=22.40 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=22.4
Q ss_pred HhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 020902 263 MFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDSP 302 (320)
Q Consensus 263 ~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~ 302 (320)
++-+.......|....+.+..+.+.-++++.+.+++++|+
T Consensus 47 ~lL~a~fvA~~qi~VYaGai~vLflF~iml~~~~~~~~~~ 86 (88)
T PRK06433 47 VMLNAEFLAAVQVLVYVGAVLILITFAVMLTKGEEGEESR 86 (88)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCCC
Confidence 3333333334566666666666666666776666555444
No 106
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=28.46 E-value=1.3e+02 Score=22.41 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhccCC
Q 020902 271 NTSQIVTELCGFVTILSGTFLLHKTK 296 (320)
Q Consensus 271 ~~~~~~~~~~G~~l~i~Gv~lLs~~~ 296 (320)
+-.++.++..|.++++.|-++++..+
T Consensus 4 gk~Nyill~iG~~vIilGfilMsg~~ 29 (69)
T PF11297_consen 4 GKKNYILLAIGIAVIILGFILMSGGG 29 (69)
T ss_pred chHHHHHHHHHHHHHHHHHHheeCCC
Confidence 34577889999999999999998644
No 107
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=26.98 E-value=3.1e+02 Score=25.03 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhcch-hhhhc--------chhhHHHHHHHHHHHHhcccccccchhhH
Q 020902 64 VGEIANFAAYAFAPA-ILVTP--------LGALSIIFSAVLAHFILREKLHIFGMLGC 112 (320)
Q Consensus 64 ~g~~~~~~al~~~p~-slv~p--------l~~~~lv~~~~la~~~l~e~~~~~~~~g~ 112 (320)
-|...++.|+..=++ ..--| +.=.+..++++++.+.++||++++...=.
T Consensus 102 wgig~sf~AlltPDl~~~~~p~l~~~lffitH~svfls~v~~~vhfreRpgksgl~~s 159 (236)
T COG5522 102 WGIGISFMALLTPDLQYLQVPWLEFLLFFITHISVFLSAVILIVHFRERPGKSGLVMS 159 (236)
T ss_pred hhhhHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHH
Confidence 445556666665555 22222 33455678889999999999999987533
No 108
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=26.24 E-value=7.8e+02 Score=28.05 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=18.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 020902 50 LYEPWWWAGMITMIVGEIANFAAYA 74 (320)
Q Consensus 50 ~~~p~w~~G~~l~~~g~~~~~~al~ 74 (320)
-||-.||+-+++.+++.+++++-..
T Consensus 73 r~r~Aw~~~~~~~~~~~~~~l~~~l 97 (1094)
T PRK02983 73 RKRAAWWVLLAYLVLAALLNVALLA 97 (1094)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999998888887776444
No 109
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=25.73 E-value=1.8e+02 Score=28.62 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=30.3
Q ss_pred hhhhcchhhHHHHHHHHHHHHhcc---------------------------cccccchhhHHHHhhhheeeEEecCCC
Q 020902 79 ILVTPLGALSIIFSAVLAHFILRE---------------------------KLHIFGMLGCALCVVGSVSIVLHAPHE 129 (320)
Q Consensus 79 slv~pl~~~~lv~~~~la~~~l~e---------------------------~~~~~~~~g~~li~~G~~~~~~~~~~~ 129 (320)
++.-|-.-++.+.+++.+.+.=|| +++++...++.+-..|++.++.++.-.
T Consensus 167 ~V~iPat~ig~~~~a~~~~~~GkeL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~gv~~VV~~g~f~ 244 (364)
T PF03605_consen 167 AVTIPATLIGVLVAAFVSSRRGKELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLGVVAVVLYGSFP 244 (364)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHcc
Confidence 444555666677777766654221 344455677777777777666655433
No 110
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=60 Score=31.43 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=54.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHH
Q 020902 207 NQFVYYQTWIFTVVVIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTIL 286 (320)
Q Consensus 207 ~~~~~~~~yl~~~~~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i 286 (320)
+-+.+|.-|+=++.+... + ..-=.|..-.+++.+.|+-....++ +.+.+-.+++|..+ ..=.+||.+.+
T Consensus 60 ~yl~~~~Ww~G~ltm~vG---e-i~NFaAYaFAPasLVtPLGAlsvi~-saila~~~L~Ekl~------~~g~lGc~l~v 128 (335)
T KOG2922|consen 60 GYLKEPLWWAGMLTMIVG---E-IANFAAYAFAPASLVTPLGALSVII-SAILASFFLKEKLN------LLGILGCVLCV 128 (335)
T ss_pred chhhhHHHHHHHHHHHHH---h-HhhHHHHhhchHhhhccchhHHHHH-HHHHHHHHHHHHHH------HhhhhheeEEe
Confidence 456666655534333322 2 1111356666888888987555544 55666778888765 23457899999
Q ss_pred HHHhhhccCCCCCCCCC
Q 020902 287 SGTFLLHKTKDMGDSPS 303 (320)
Q Consensus 287 ~Gv~lLs~~~~~~~~~~ 303 (320)
.|..++..+.++++|-.
T Consensus 129 ~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 129 VGSTTIVIHAPKEQEIE 145 (335)
T ss_pred cccEEEEEecCcccccc
Confidence 99999987777666543
No 111
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=22.36 E-value=8.5e+02 Score=24.90 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=47.8
Q ss_pred cchhhHHHHHHHH---HHHHHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHH
Q 020902 208 QFVYYQTWIFTVV---VIFTCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVT 284 (320)
Q Consensus 208 ~~~~~~~yl~~~~---~v~~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l 284 (320)
.+.+|..|.+... ..+....|.+|=+. |.=+-.+..+......-+.++-.|+|.+- +....-.+.=...
T Consensus 96 gW~YW~~wv~v~~ae~tAi~~y~~~WfP~v------P~Wv~al~~~~l~~~~NL~sVk~FGE~Ef--WfAlIKV~aIi~~ 167 (462)
T COG1113 96 GWTYWFFWVLVGIAELTAIGIYLQFWFPDV------PQWVFALAAVVLLLAVNLISVKVFGELEF--WFALIKVAAIIAF 167 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 3456666666553 34456667666322 23334444455555566788899999852 3333333333355
Q ss_pred HHHHHhhhccCCCCC
Q 020902 285 ILSGTFLLHKTKDMG 299 (320)
Q Consensus 285 ~i~Gv~lLs~~~~~~ 299 (320)
++.|+.++...-+.+
T Consensus 168 Iv~G~~ll~~g~~~~ 182 (462)
T COG1113 168 IVVGIVLLFGGFGGG 182 (462)
T ss_pred HHHHHHHHhhccCCC
Confidence 678888887643333
No 112
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=21.59 E-value=7.4e+02 Score=24.29 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=46.5
Q ss_pred HHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 020902 226 LLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGD 300 (320)
Q Consensus 226 l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~ 300 (320)
..|...+--++.+-|++. +-+.+-..+..+.+...+++++... ..| +.+.++...|+.+.......+.
T Consensus 103 alqNnl~yval~~ldaat-yqVt~qlKI~tTA~f~vl~L~rkLs--~~Q----w~Al~lL~~Gv~~vQ~~~~~~~ 170 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAAT-YQVTYQLKILTTAIFSVLILRRKLS--RLQ----WMALVLLFAGVALVQLPSLSPT 170 (345)
T ss_pred HHhhhHHHHHHhcCCchh-hhhhhhHHHHHHHHHHHHHHhhhhh--HHH----HHHHHHHHHHHHHHhccCCCCC
Confidence 447766667888888664 4455567788888899999988653 445 4555677888888884333333
No 113
>COG2034 Predicted membrane protein [Function unknown]
Probab=21.44 E-value=1.5e+02 Score=23.04 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q 020902 274 QIVTELCGFVTILSGTFLLHKTKDMGDSPS 303 (320)
Q Consensus 274 ~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~~ 303 (320)
.......|+.+++.|+.+.+.+++.+.++|
T Consensus 11 g~~li~iGf~LifLGi~l~~~~~~~~~~~~ 40 (85)
T COG2034 11 GLILIFIGFLLIFLGIVLPAFSPFAESGSS 40 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCccccCCc
Confidence 445677899999999999988877776633
No 114
>MTH00021 ND6 NADH dehydrogenase subunit 6; Validated
Probab=21.31 E-value=1.1e+02 Score=27.03 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=22.1
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHH--HHHHHHHhhhccCCC
Q 020902 257 IVASIIMFKDWDSQNTSQIVTELCGF--VTILSGTFLLHKTKD 297 (320)
Q Consensus 257 i~~G~i~f~E~~~~~~~~~~~~~~G~--~l~i~Gv~lLs~~~~ 297 (320)
-..|-.+|.|+. +.....|+ ++...|.+.|+|+|+
T Consensus 131 ~~iG~~L~t~y~------l~Fel~s~lLLvAmIGAIvLa~~~~ 167 (188)
T MTH00021 131 EALGRILYITCY------YLFLLASFILLVAMIGAIVLTQEPG 167 (188)
T ss_pred HHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344777887642 22333343 456889999998874
No 115
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=21.10 E-value=1.5e+02 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=12.9
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 020902 257 IVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFL 291 (320)
Q Consensus 257 i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~l 291 (320)
+..|.+.+++ .+...+.|..+.+.|++.
T Consensus 75 if~G~l~~~~-------~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 75 IFLGTLCLGQ-------SILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHHHHHHhh-------HHHHHHHHHHHHHHHHHH
Confidence 4455555555 333344444444444443
No 116
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=20.86 E-value=6.8e+02 Score=24.61 Aligned_cols=37 Identities=19% Similarity=-0.039 Sum_probs=29.1
Q ss_pred HHhHhhcccCceeechhHHHHHHHHHHHHHHHHhccc
Q 020902 231 YLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDW 267 (320)
Q Consensus 231 ~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~ 267 (320)
++.+=++.-|+.-+.|+--+.-....+..|+..-+|.
T Consensus 294 ~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~ 330 (399)
T PF00909_consen 294 WLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEV 330 (399)
T ss_dssp HHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHH
T ss_pred cccceeEeccccceEeeeeccHHHHHHHHHHHhcccc
Confidence 5788889899999999988888787777777766663
No 117
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=20.58 E-value=80 Score=30.48 Aligned_cols=117 Identities=18% Similarity=0.312 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--CCcc-----CCC------c------cccc---cchhHHHHHHHH-
Q 020902 6 DNVHGFVLAVSSSIFIGSSFIIKKKGLKKAGTT--GTRA-----GSG------G------YSYL---YEPWWWAGMITM- 62 (320)
Q Consensus 6 ~~~iGv~lal~~a~~~a~g~vlqk~~~~~~~~~--~~~~-----~~~------~------~~~~---~~p~w~~G~~l~- 62 (320)
-.++|.+.|.++.+..+.=++++|+...+++++ +... ... + .... ....|-.....+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH
Confidence 467899999999999999999999987543221 1100 000 0 0000 111222222222
Q ss_pred ---HHHHHHHHHHHhh---c-chhhhhcchhhHHHHHHHHHHHHhcccccccchhhHHHHhhhheeeE
Q 020902 63 ---IVGEIANFAAYAF---A-PAILVTPLGALSIIFSAVLAHFILREKLHIFGMLGCALCVVGSVSIV 123 (320)
Q Consensus 63 ---~~g~~~~~~al~~---~-p~slv~pl~~~~lv~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~ 123 (320)
+.+...|..++-. . |++ -+-.+..=-......+.++++|++|.....|..+.+.|+.+..
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT-~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALT-YSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchh-hhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 3333444433321 1 111 1111211122334567788888999999999999999977553
Done!