Query 020902
Match_columns 320
No_of_seqs 142 out of 722
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 09:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.1 7.3E-10 2.5E-14 89.0 10.1 99 12-125 5-104 (110)
2 2i68_A Protein EMRE; transmemb 98.9 9.3E-10 3.2E-14 91.9 5.5 99 12-125 5-104 (137)
3 2i68_A Protein EMRE; transmemb 97.7 0.00011 3.9E-09 60.9 7.6 67 224-296 39-105 (137)
4 3b5d_A Multidrug transporter E 97.6 0.001 3.6E-08 52.8 11.7 67 224-296 39-105 (110)
5 3rko_J NADH-quinone oxidoreduc 32.2 58 0.002 27.7 5.0 46 257-306 127-172 (184)
6 3o7q_A L-fucose-proton symport 17.1 5.4E+02 0.018 22.7 12.3 17 163-179 82-98 (438)
7 2jp3_A FXYD domain-containing 12.7 1.9E+02 0.0066 20.4 3.4 22 273-294 17-38 (67)
8 2hac_A T-cell surface glycopro 11.9 1.3E+02 0.0046 18.2 2.0 22 86-107 10-31 (33)
9 3arc_J Photosystem II reaction 11.7 2.2E+02 0.0076 17.9 3.0 11 51-61 7-17 (40)
10 3gia_A Uncharacterized protein 9.2 9.9E+02 0.034 21.5 9.8 34 77-110 339-375 (444)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.06 E-value=7.3e-10 Score=88.98 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHH
Q 020902 12 VLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVTPL-GALSII 90 (320)
Q Consensus 12 ~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~pl-~~~~lv 90 (320)
++-+++.++-+.++.+.|++.. ..+.+.++.+...+++++.+...+++..|++.+.|+ .+++.+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~~---------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v 69 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhccC---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHH
Confidence 4556788889999999998620 112355677888899999999999999999999999 899999
Q ss_pred HHHHHHHHHhcccccccchhhHHHHhhhheeeEEe
Q 020902 91 FSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLH 125 (320)
Q Consensus 91 ~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~ 125 (320)
++.+++.+++||++++++++|+.+|+.|++++...
T Consensus 70 ~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998877553
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.92 E-value=9.3e-10 Score=91.85 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCccccccchhHHHHHHHHHHHHHHHHHHHhhcchhhhhcc-hhhHHH
Q 020902 12 VLAVSSSIFIGSSFIIKKKGLKKAGTTGTRAGSGGYSYLYEPWWWAGMITMIVGEIANFAAYAFAPAILVTPL-GALSII 90 (320)
Q Consensus 12 ~lal~~a~~~a~g~vlqk~~~~~~~~~~~~~~~~~~~~~~~p~w~~G~~l~~~g~~~~~~al~~~p~slv~pl-~~~~lv 90 (320)
++-+++.++-+.|+.+.|++.. ..+.+.++.|++++++++.++..+++..|++.+.|+ ..++.+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g---------------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 4456778889999999999621 112345678888999999999999999999999999 899999
Q ss_pred HHHHHHHHHhcccccccchhhHHHHhhhheeeEEe
Q 020902 91 FSAVLAHFILREKLHIFGMLGCALCVVGSVSIVLH 125 (320)
Q Consensus 91 ~~~~la~~~l~e~~~~~~~~g~~li~~G~~~~~~~ 125 (320)
++.+++.+++||+++.++++|+++|+.|++++...
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999887543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.66 E-value=0.00011 Score=60.87 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=46.9
Q ss_pred HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 020902 224 TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTK 296 (320)
Q Consensus 224 ~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 296 (320)
+...-.+++++++++.|.+.++|+.....++.+.+.|.++|+|..... ..+|..+++.|++++.+.+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcCC
Confidence 344456788999999999999999888999999999999999986532 4578888999999987654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.56 E-value=0.001 Score=52.75 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHhhcccCceeechhHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCC
Q 020902 224 TCLLQINYLNKALDTFNTAVISPVYYVMFTTLTIVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTK 296 (320)
Q Consensus 224 ~~l~Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~ 296 (320)
+...-.+++++++++.|.+.++|+.....++...+.|..+|+|..+ + ...+|..+++.|++++...+
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s--~----~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLD--L----PAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCC--H----HHHHHHHHHHHHHHHHhcCC
Confidence 3344566788899999999999998899999999999999999765 3 34688889999999998754
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=32.23 E-value=58 Score=27.66 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=26.6
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCC
Q 020902 257 IVASIIMFKDWDSQNTSQIVTELCGFVTILSGTFLLHKTKDMGDSPSSDS 306 (320)
Q Consensus 257 i~~G~i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~lLs~~~~~~~~~~~~~ 306 (320)
-..|..+|.|+.- |.+..... ++....|.+.|+|++..++..+.++
T Consensus 127 ~~iG~~Lft~Y~l--pFElaSvl--LLvAmIGAIvLarr~~~~~~~~~~~ 172 (184)
T 3rko_J 127 KAVGITLFGPYVL--AVELASML--LLAGLVVAFHVGREERAGEVLSNRK 172 (184)
T ss_dssp HHHHHHHTTTSHH--HHHHHHHH--HHHHHHHHHHHHCCCCCSSCC----
T ss_pred HHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHHHhcccccccccccc
Confidence 4578888887531 22322222 2456788999999887776665553
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=17.06 E-value=5.4e+02 Score=22.74 Aligned_cols=17 Identities=6% Similarity=-0.285 Sum_probs=9.8
Q ss_pred HhhcccCCCchHHHHHH
Q 020902 163 FKFVPTHGNSHLIVYVG 179 (320)
Q Consensus 163 ~~~~~r~~~~~~~~~~~ 179 (320)
.+...|.|+|+.+..+.
T Consensus 82 G~l~dr~g~r~~l~~~~ 98 (438)
T 3o7q_A 82 GILMKKLSYKAGIITGL 98 (438)
T ss_dssp HHHHHHSCHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHH
Confidence 34566777666655444
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.72 E-value=1.9e+02 Score=20.36 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 020902 273 SQIVTELCGFVTILSGTFLLHK 294 (320)
Q Consensus 273 ~~~~~~~~G~~l~i~Gv~lLs~ 294 (320)
....+++++.++.+.|+.++-.
T Consensus 17 LRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred heecchhhHHHHHHHHHHHHHc
Confidence 4566777777788888877743
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=11.85 E-value=1.3e+02 Score=18.21 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHhccccccc
Q 020902 86 ALSIIFSAVLAHFILREKLHIF 107 (320)
Q Consensus 86 ~~~lv~~~~la~~~l~e~~~~~ 107 (320)
++=++...++..++.+||+.+.
T Consensus 10 giL~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 10 GILFIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3445677888888999998874
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=11.69 E-value=2.2e+02 Score=17.94 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=8.8
Q ss_pred cchhHHHHHHH
Q 020902 51 YEPWWWAGMIT 61 (320)
Q Consensus 51 ~~p~w~~G~~l 61 (320)
|-|+|++|.+.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 56999999864
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=9.17 E-value=9.9e+02 Score=21.46 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=17.5
Q ss_pred chhhhhcchhhHHHHHH---HHHHHHhcccccccchh
Q 020902 77 PAILVTPLGALSIIFSA---VLAHFILREKLHIFGML 110 (320)
Q Consensus 77 p~slv~pl~~~~lv~~~---~la~~~l~e~~~~~~~~ 110 (320)
+...+.++.+.+..+.- .++.+.+++|-..+++.
T Consensus 339 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 375 (444)
T 3gia_A 339 NMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEI 375 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchH
Confidence 55556666666654332 24555555544444443
Done!