Query 020902
Match_columns 320
No_of_seqs 142 out of 722
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 09:52:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020902.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020902hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 42.6 49 0.0036 27.5 9.0 17 46-62 15-31 (447)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 11.0 1.2E+02 0.0089 16.9 3.0 11 51-61 1-11 (34)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 7.4 6E+02 0.043 21.3 13.2 35 228-262 296-330 (383)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 6.6 2E+02 0.015 19.4 3.6 27 262-291 55-81 (103)
5 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.9 2.2E+02 0.016 14.7 2.6 12 210-221 6-17 (26)
6 d1xb4a1 a.4.5.54 (A:2-125) Vac 5.6 70 0.0051 23.4 0.4 15 302-316 68-82 (124)
7 d2p7tc1 f.14.1.1 (C:86-119) Po 5.6 1.6E+02 0.012 16.0 1.8 24 79-102 10-33 (34)
8 d1q90b_ f.21.1.2 (B:) Cytochro 4.4 2.9E+02 0.021 21.6 3.6 41 48-95 105-148 (212)
9 d1m56d_ f.23.8.1 (D:) Bacteria 3.8 4.2E+02 0.03 15.3 3.0 15 209-223 19-33 (42)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 3.5 4.1E+02 0.03 14.7 3.5 22 212-233 16-37 (37)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=42.63 E-value=49 Score=27.49 Aligned_cols=17 Identities=6% Similarity=-0.179 Sum_probs=10.6
Q ss_pred ccccccchhHHHHHHHH
Q 020902 46 GYSYLYEPWWWAGMITM 62 (320)
Q Consensus 46 ~~~~~~~p~w~~G~~l~ 62 (320)
..+..|+.+|.+-..++
T Consensus 15 ~~~~~~~~~w~i~~~~~ 31 (447)
T d1pw4a_ 15 IDPTYRRLRWQIFLGIF 31 (447)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hccchhhHHHHHHHHHH
Confidence 34666777887655444
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.97 E-value=1.2e+02 Score=16.88 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=8.4
Q ss_pred cchhHHHHHHH
Q 020902 51 YEPWWWAGMIT 61 (320)
Q Consensus 51 ~~p~w~~G~~l 61 (320)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 45899988754
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=7.44 E-value=6e+02 Score=21.33 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=24.7
Q ss_pred HHHHHhHhhcccCceeechhHHHHHHHHHHHHHHH
Q 020902 228 QINYLNKALDTFNTAVISPVYYVMFTTLTIVASII 262 (320)
Q Consensus 228 Q~~~ln~aL~~~~a~~v~P~~~v~~~~~~i~~G~i 262 (320)
-..++.+-++.-|+.-+.|+=-+.-....+..|..
T Consensus 296 ~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 296 GVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccceEeehhhhHHHHHHHHHHh
Confidence 34556666888899999998766666666666654
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.61 E-value=2e+02 Score=19.35 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=13.3
Q ss_pred HHhcccCCCChHHHHHHHHHHHHHHHHHhh
Q 020902 262 IMFKDWDSQNTSQIVTELCGFVTILSGTFL 291 (320)
Q Consensus 262 i~f~E~~~~~~~~~~~~~~G~~l~i~Gv~l 291 (320)
+=|+|..+.++. ..+++.+.++.|+.+
T Consensus 55 vGYGDi~P~t~~---gr~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 55 VGYGDLYPVTLW---GRCVAVVVMVAGITS 81 (103)
T ss_dssp CCCSSSCCCSHH---HHHHHHHHHHHHHHH
T ss_pred cccCccccCChh---HHHHHHHHHHHHHHH
Confidence 346777665543 233344444444443
No 5
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.87 E-value=2.2e+02 Score=14.69 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 020902 210 VYYQTWIFTVVV 221 (320)
Q Consensus 210 ~~~~~yl~~~~~ 221 (320)
.-|.+|.+...+
T Consensus 6 aiw~fw~ffall 17 (26)
T d1rzhh2 6 AIYSFWIFLAGL 17 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 446666655544
No 6
>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.64 E-value=70 Score=23.42 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=8.9
Q ss_pred CCCCCCCcCCCCCCC
Q 020902 302 PSSDSPVFTNQNTNQ 316 (320)
Q Consensus 302 ~~~~~~~~~~~~~~~ 316 (320)
.++++|+|.|..-|.
T Consensus 68 ~~~~~pLF~N~~I~R 82 (124)
T d1xb4a1 68 KKISKNLFNNEDIQR 82 (124)
T ss_dssp ----CBTTEETTTTE
T ss_pred cccCCCCccCcccCC
Confidence 346899999987663
No 7
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=5.62 E-value=1.6e+02 Score=16.00 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=15.1
Q ss_pred hhhhcchhhHHHHHHHHHHHHhcc
Q 020902 79 ILVTPLGALSIIFSAVLAHFILRE 102 (320)
Q Consensus 79 slv~pl~~~~lv~~~~la~~~l~e 102 (320)
..|+.+.+.+++++++-.++.=+|
T Consensus 10 vmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 10 VMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccchhhhHHHHHHHHhhccc
Confidence 456667777888877755544333
No 8
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.41 E-value=2.9e+02 Score=21.63 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=24.6
Q ss_pred ccccch---hHHHHHHHHHHHHHHHHHHHhhcchhhhhcchhhHHHHHHHH
Q 020902 48 SYLYEP---WWWAGMITMIVGEIANFAAYAFAPAILVTPLGALSIIFSAVL 95 (320)
Q Consensus 48 ~~~~~p---~w~~G~~l~~~g~~~~~~al~~~p~slv~pl~~~~lv~~~~l 95 (320)
..+|+| .|+.|+.++.+.....+.. ++-|.+..++--+.+.
T Consensus 105 gsyk~pre~~W~~Gv~l~~l~m~~aftG-------Y~Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 105 GGFKRPRELTWVTGVIMAVCTVSFGVTG-------YSLPWDQVGYWAVKIV 148 (212)
T ss_dssp TTTSSSCHHHHHHHHHHHHHHHHHHHHH-------HHTTCBHHHHHHHHHH
T ss_pred CcccCcccceehHhHHHHHHHHHHHHhh-------hhcchhhHHHHHHHHH
Confidence 345566 5999998876554444443 3456666666544443
No 9
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.83 E-value=4.2e+02 Score=15.32 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHH
Q 020902 209 FVYYQTWIFTVVVIF 223 (320)
Q Consensus 209 ~~~~~~yl~~~~~v~ 223 (320)
|-.|.+|..+++.+.
T Consensus 19 Fik~~t~~~i~~i~~ 33 (42)
T d1m56d_ 19 FVRMVTWAAVVIVAA 33 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666555443
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.51 E-value=4.1e+02 Score=14.72 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 020902 212 YQTWIFTVVVIFTCLLQINYLN 233 (320)
Q Consensus 212 ~~~yl~~~~~v~~~l~Q~~~ln 233 (320)
-..|-++.+.+...++-.||.|
T Consensus 16 sLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566666666666677654
Done!