BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020903
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
Length = 1375
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 116/190 (61%), Gaps = 6/190 (3%)
Query: 119 RCDWITPNSDP---LYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFR 175
RC W T + LY +HD EWG P+++D+KLFE LV A LSW IL +R+ FR
Sbjct: 787 RCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITILKKREAFR 846
Query: 176 KLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCW 235
FD+FD V+ + E K+ L N ++ + AK+ A + NAK + VQ+EFGSF KY W
Sbjct: 847 VAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQREFGSFDKYIW 906
Query: 236 NFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLL 295
FV P+ N F +P TP ++ I+KDL ++GF+ VG T +Y+ MQ G+VNDHL
Sbjct: 907 GFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQSIGMVNDHLT 966
Query: 296 TCFRYQQCNA 305
+CF+ CN+
Sbjct: 967 SCFK---CNS 973
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12)
GN=tag PE=1 SV=1
Length = 187
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 2/184 (1%)
Query: 117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRK 176
++RC W++ DPLYI++HD EWGVP D +KLFE++ A LSW +L +R+ +R
Sbjct: 1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRA 58
Query: 177 LFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWN 236
F FD V+ E+ + L + ++ K++AI+ NA+ L+++Q F + W+
Sbjct: 59 CFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWS 118
Query: 237 FVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLT 296
FVNH P ++P T ++ +SK L ++GF+ VG T+ YSFMQ G+VNDH++
Sbjct: 119 FVNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVG 178
Query: 297 CFRY 300
C Y
Sbjct: 179 CCCY 182
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1
Length = 185
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 106/179 (59%), Gaps = 2/179 (1%)
Query: 119 RCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLF 178
RC W+ S +YI +HD+EWG P +D +KLFE + A LSW +L +R+ +R+ F
Sbjct: 4 RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61
Query: 179 DNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFV 238
FD +++ T + + N L+ AKL AIV+NAK L +++ +FS + W+FV
Sbjct: 62 HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFV 121
Query: 239 NHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLLTC 297
NH P+ N R VP KT ++ +SK L ++GF +G T Y+FMQ G+V+DHL C
Sbjct: 122 NHKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC 180
>sp|C7DZK3|CRA1A_DANRE Collagen alpha-1(XXVII) chain A OS=Danio rerio GN=col27a1a PE=2
SV=1
Length = 1783
Score = 37.4 bits (85), Expect = 0.14, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 4 KVQSLARPVSEQRAILGPTGNRVRASQDPKRK---TEVPKRPKKPAPKIPEPVIRNNASV 60
K S+ +P + A +GP Q+ K P PK+P+P +P+ N S
Sbjct: 403 KPTSVPKPNPTKNASIGPRPTNSNKKQNAILKPLPAPKPTVPKRPSPTNKKPLQPKNKSH 462
Query: 61 DSSCSSESSTSSAASAKRMENSRRSVTAKRNGVKNMKVVPHASAEIPEASPMNSG-PIKR 119
+ + +S+ + +++K+ + +S T+ N P + E P+ +P S P+
Sbjct: 463 TTPLTPKSTLAPNSTSKKPLPTLKS-TSFTTAAPNK---PPKTLETPKVNPDKSKTPV-- 516
Query: 120 CDWITPNSDPLYISFHDEEWGVPVYDDRKLFEL 152
P S P F + +P +DD + FE+
Sbjct: 517 -----PYSTPRTPRFSIQSVTLPAFDDFQSFEV 544
>sp|A2Q8R2|MPH1_ASPNC ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=mph1 PE=3 SV=2
Length = 1124
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 10 RPVSEQRAILGPTGNRVRASQDPKRKTEVPKRPKK 44
RPV+++RAI P N VR +PKR+ PKRP K
Sbjct: 850 RPVADKRAIDIPEENTVRDLPEPKRRGRAPKRPPK 884
>sp|Q5U2S3|ZUFSP_RAT Zinc finger with UFM1-specific peptidase domain protein OS=Rattus
norvegicus GN=Zufsp PE=2 SV=1
Length = 577
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 119 RCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELL----VFSQALAELSWPAILSRRDIF 174
RC W++ D + SF D+ WG + + L L V+S L +S P I + +
Sbjct: 337 RCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNEVYSDCLKGMSVPCIPKIQSMI 396
Query: 175 RKLF-DNFDISSVSQFTEK 192
+ + FD SQ K
Sbjct: 397 EDAWNEGFDPQGASQLNNK 415
>sp|A6QNP9|CCD69_BOVIN Coiled-coil domain-containing protein 69 OS=Bos taurus GN=CCDC69
PE=2 SV=2
Length = 294
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 19 LGPTGNRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKR 78
+G +R+ + PK++ + P +P KP P+ P+ + A+ D C+SE + + R
Sbjct: 1 MGCGHSRLSCCKPPKKRRQRPDQPPKPEPQELGPLNGDTATTDHVCASEEAEQHQKAITR 60
Query: 79 M 79
+
Sbjct: 61 I 61
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2
SV=1
Length = 486
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 57 NASVDSSCSSESSTSSAASAKRMENSRRSVTAKRNGVKNMKVVPHASAEIPEASPMNSGP 116
N + S ++ +S K E S + KRNG KN + ++ E P N+G
Sbjct: 207 NVPGSGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGD 266
Query: 117 IKRCDWITPNS 127
KR D +PNS
Sbjct: 267 EKRNDEQSPNS 277
>sp|Q5HIB2|SDRE_STAAC Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain COL) GN=sdrE PE=3 SV=1
Length = 1166
Score = 32.3 bits (72), Expect = 4.3, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+++ D S ++ ++ + KR+
Sbjct: 206 NQVTDATNPKEPVNVSKEELKKNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKM 265
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 266 RFAVAQPAAVASNNV 280
>sp|Q8NXX5|SDRE_STAAW Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain MW2) GN=sdrE PE=3 SV=1
Length = 1141
Score = 32.3 bits (72), Expect = 5.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+++ D S ++ ++ + KR+
Sbjct: 201 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKM 260
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 261 RFAVAQPAAVASNNV 275
>sp|Q6GBS4|SDRE_STAAS Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain MSSA476) GN=sdrE PE=3 SV=1
Length = 1141
Score = 32.3 bits (72), Expect = 5.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+++ D S ++ ++ + KR+
Sbjct: 201 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKM 260
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 261 RFAVAQPAAVASNNV 275
>sp|O86489|SDRE_STAAE Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain Newman) GN=sdrE PE=1 SV=1
Length = 1166
Score = 32.3 bits (72), Expect = 5.4, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+++ D S ++ ++ + KR+
Sbjct: 206 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKM 265
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 266 RFAVAQPAAVASNNV 280
>sp|Q2FJ77|SDRE_STAA3 Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain USA300) GN=sdrE PE=3 SV=1
Length = 1154
Score = 32.3 bits (72), Expect = 5.4, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+++ D S ++ ++ + KR+
Sbjct: 206 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKM 265
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 266 RFAVAQPAAVASNNV 280
>sp|Q932F7|SDRE_STAAM Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=sdrE PE=3 SV=1
Length = 1141
Score = 32.0 bits (71), Expect = 6.9, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+ + D S ++ ++ + KR+
Sbjct: 201 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDNNTDRSTKPVATAPTSVAPKRLNAKM 260
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 261 RFAVAQPAAVASNNV 275
>sp|Q99W46|SDRE_STAAN Serine-aspartate repeat-containing protein E OS=Staphylococcus
aureus (strain N315) GN=sdrE PE=1 SV=1
Length = 1141
Score = 32.0 bits (71), Expect = 7.1, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+ + D S ++ ++ + KR+
Sbjct: 201 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDNNTDRSTKPVATAPTSVAPKRLNAKM 260
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 261 RFAVAQPAAVASNNV 275
>sp|Q6GJA6|BBP_STAAR Bone sialoprotein-binding protein OS=Staphylococcus aureus (strain
MRSA252) GN=bbp PE=3 SV=1
Length = 1137
Score = 31.6 bits (70), Expect = 7.3, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 24 NRVRASQDPKRKTEVPKRPKKPAPKIPEPVIRNNASVDSSCSSESSTSSAASAKRMENSR 83
N+V + +PK V K K P+ + ++RN+++ D S ++ ++ + KR+
Sbjct: 201 NQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDRSTKPVATAPTSVAPKRVNAKI 260
Query: 84 RSVTAKRNGVKNMKV 98
R A+ V + V
Sbjct: 261 RFAVAQPAAVASNNV 275
>sp|Q6MTU8|UVRC_MYCMS UvrABC system protein C OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=uvrC PE=3 SV=1
Length = 584
Score = 31.6 bits (70), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 126 NSDPLYISFHDEEWGVPVYDDRKLF----ELLVFSQALAELSWPAILSRRDIFRKLFDNF 181
N L+ S+ + + +Y D L ELL Q L E S ++ + D+F KL
Sbjct: 281 NLSELFNSYLQQIYQKNIYPDVLLIPNEIELLDLDQNLLEFSSYSLNKQDDVFIKLAKQN 340
Query: 182 DISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKY-------C 234
I S++ K ++S VN + + + NA + LK + F + Y C
Sbjct: 341 AIDSLN----KSVISHNVNSGDEIEILEQLKQISNASKYLKRIEVFDISNIYSQFITGAC 396
Query: 235 WNFVNHAPVRNGFR 248
++N P+RN FR
Sbjct: 397 IVYINAKPIRNEFR 410
>sp|Q57830|CAS8A_METJA CRISPR-associated protein Cas8a2/Csa4 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=cas8a2 PE=3 SV=1
Length = 375
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 96 MKVVPHASAEIPEASPMNSG-PIKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLV 154
+ ++P A +P+ + G PIK D N +I FH + + D+R + +
Sbjct: 157 LTLMPAAGKYMPKIYGVKGGNPIKIDD---SNYALAWIGFHYYAPYINISDNRATYIHIY 213
Query: 155 FSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKL 194
+ L EL IL+ +D+ +K+ +N+ + F KKL
Sbjct: 214 AIKPLEELGLIEILALKDLKKKI-NNYQLGKYKFFVNKKL 252
>sp|B3PMD5|RF1_MYCA5 Peptide chain release factor 1 OS=Mycoplasma arthritidis (strain
158L3-1) GN=prfA PE=3 SV=1
Length = 355
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 32/71 (45%)
Query: 194 LLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQV 253
L+S+K LL E I + K+ K+Q+E S F+N+ + + ++++
Sbjct: 5 LISIKEKYELLAQELTKLEIFNDIKKYTKIQKEHASIEDIAIAFINYLAAESSYNLSKEI 64
Query: 254 PVKTPKAELIS 264
ELI+
Sbjct: 65 LQNEKDEELIA 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,310,708
Number of Sequences: 539616
Number of extensions: 4321715
Number of successful extensions: 16530
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 16307
Number of HSP's gapped (non-prelim): 271
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)