Query 020903
Match_columns 320
No_of_seqs 163 out of 1190
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 1.4E-92 4.7E-97 633.0 19.1 184 117-302 1-184 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 1.7E-91 5.9E-96 624.7 19.3 182 117-300 1-182 (183)
3 3n0u_A Probable N-glycosylase/ 97.3 0.00047 1.6E-08 62.4 7.7 106 145-289 46-152 (219)
4 1orn_A Endonuclease III; DNA r 96.5 0.037 1.3E-06 49.7 12.7 69 149-221 33-101 (226)
5 1kea_A Possible G-T mismatches 96.5 0.025 8.6E-07 50.5 11.3 102 149-288 35-136 (221)
6 2abk_A Endonuclease III; DNA-r 96.0 0.029 1E-06 49.5 9.3 70 149-222 29-98 (211)
7 3n5n_X A/G-specific adenine DN 96.0 0.094 3.2E-06 49.3 13.0 104 146-287 46-149 (287)
8 2h56_A DNA-3-methyladenine gly 95.8 0.062 2.1E-06 48.4 10.7 129 127-288 29-160 (233)
9 1kg2_A A/G-specific adenine gl 95.8 0.079 2.7E-06 47.3 11.1 100 149-287 30-129 (225)
10 1pu6_A 3-methyladenine DNA gly 95.7 0.11 3.9E-06 46.2 11.7 108 149-288 30-142 (218)
11 2yg9_A DNA-3-methyladenine gly 95.6 0.057 2E-06 48.5 9.4 128 127-287 38-166 (225)
12 3fhg_A Mjogg, N-glycosylase/DN 95.5 0.077 2.6E-06 46.9 9.8 112 144-289 28-139 (207)
13 3fsp_A A/G-specific adenine gl 94.6 0.37 1.3E-05 45.6 12.4 72 146-222 36-107 (369)
14 4e9f_A Methyl-CPG-binding doma 94.2 0.27 9.3E-06 42.4 9.5 56 150-207 32-87 (161)
15 3s6i_A DNA-3-methyladenine gly 94.0 0.3 1E-05 43.9 9.7 128 127-289 25-162 (228)
16 2jhn_A ALKA, 3-methyladenine D 91.8 0.86 2.9E-05 42.2 9.7 128 121-288 90-232 (295)
17 3fhf_A Mjogg, N-glycosylase/DN 91.2 0.46 1.6E-05 42.8 6.9 108 145-289 40-147 (214)
18 4b21_A Probable DNA-3-methylad 89.9 0.9 3.1E-05 41.0 7.8 129 127-287 36-170 (232)
19 3i0w_A 8-oxoguanine-DNA-glycos 89.1 1.6 5.5E-05 40.4 9.0 129 127-290 94-235 (290)
20 2d3d_A VTS1 protein; RNA bindi 82.8 2.1 7.2E-05 34.0 5.4 47 172-220 31-77 (88)
21 2b6g_A VTS1P; alpha-helix, pen 80.8 3.5 0.00012 34.4 6.3 54 164-220 55-108 (119)
22 1v38_A SAM-domain protein sams 76.9 2.6 8.8E-05 31.9 4.0 43 172-216 25-70 (78)
23 1ucv_A Ephrin type-A receptor 76.0 4.2 0.00014 30.8 5.0 46 172-219 20-68 (81)
24 1mpg_A ALKA, 3-methyladenine D 75.7 7.3 0.00025 35.6 7.5 122 139-295 103-241 (282)
25 2es6_A VTS1P; SAM domain, prot 74.8 4 0.00014 33.3 4.8 46 172-219 44-89 (101)
26 3h8m_A Ephrin type-A receptor 73.5 5 0.00017 31.3 5.0 45 172-218 38-85 (90)
27 3k1r_B Usher syndrome type-1G 72.9 6.5 0.00022 29.5 5.3 44 172-220 19-62 (74)
28 2xhi_A N-glycosylase/DNA lyase 71.6 10 0.00036 36.2 7.7 130 128-289 132-276 (360)
29 3hil_A Ephrin type-A receptor 70.3 4.3 0.00015 31.2 3.9 42 172-215 36-80 (82)
30 1b0x_A Protein (EPHA4 receptor 70.2 6.5 0.00022 30.6 5.0 46 172-219 39-87 (94)
31 2dl0_A SAM and SH3 domain-cont 69.2 3 0.0001 33.0 2.9 43 172-216 36-81 (97)
32 1b4f_A EPHB2; SAM domain, EPH 68.5 7.7 0.00026 29.1 4.9 46 173-220 25-73 (82)
33 1x40_A ARAP2; ASAP-related pro 66.8 5.6 0.00019 30.8 3.9 45 172-218 28-75 (91)
34 2eao_A Ephrin type-B receptor 66.4 7.9 0.00027 30.3 4.8 45 172-218 35-82 (99)
35 3kka_C Ephrin type-A receptor 66.1 6.9 0.00024 30.3 4.3 43 172-216 34-79 (86)
36 2kso_A Ephrin type-A receptor 65.1 9.3 0.00032 29.1 4.8 45 172-218 29-76 (82)
37 2k4p_A Phosphatidylinositol-3, 59.9 10 0.00034 29.5 4.2 43 172-216 39-84 (86)
38 2e8n_A Ephrin type-A receptor 59.5 6.6 0.00022 30.1 3.0 46 172-219 25-73 (88)
39 2p5k_A Arginine repressor; DNA 56.1 12 0.00041 25.6 3.7 30 260-290 22-51 (64)
40 1oxj_A RNA-binding protein sma 55.8 8.3 0.00029 34.1 3.4 44 172-218 20-63 (173)
41 2kg5_A ARF-GAP, RHO-GAP domain 53.5 12 0.00042 29.6 3.8 43 172-216 39-84 (100)
42 3sei_A Caskin-1; SAM domain, p 45.7 19 0.00066 30.2 4.0 43 172-216 23-67 (149)
43 2ean_A Connector enhancer of k 43.7 35 0.0012 25.3 4.8 44 172-219 32-75 (83)
44 3sei_A Caskin-1; SAM domain, p 43.1 35 0.0012 28.5 5.2 46 173-220 93-141 (149)
45 2ovk_B RLC, myosin regulatory 41.3 44 0.0015 25.5 5.2 60 171-237 15-74 (153)
46 2b1u_A Calmodulin-like protein 40.5 20 0.00069 23.9 2.8 40 171-210 5-44 (71)
47 2lmr_A ODIN, ankyrin repeat an 38.2 22 0.00077 28.3 3.1 43 172-216 42-89 (101)
48 2qkq_A Ephrin type-B receptor 38.1 21 0.00072 26.8 2.8 45 172-218 28-75 (83)
49 3bs5_B Connector enhancer of k 37.8 52 0.0018 24.1 4.9 44 172-219 28-71 (80)
50 2ktg_A Calmodulin, putative; e 36.5 22 0.00074 24.8 2.5 46 170-215 12-57 (85)
51 2gle_A Neurabin-1; SAM domain, 36.4 70 0.0024 23.0 5.4 45 172-218 22-68 (74)
52 2lv7_A Calcium-binding protein 35.8 12 0.00042 28.5 1.2 44 172-215 36-79 (100)
53 1k94_A Grancalcin; penta-EF-ha 35.2 28 0.00095 27.2 3.2 50 167-216 65-114 (165)
54 2yvq_A Carbamoyl-phosphate syn 34.0 29 0.00098 28.6 3.2 33 258-290 37-69 (143)
55 2kiv_A Ankyrin repeat and ster 32.6 40 0.0014 28.0 3.9 42 173-216 28-74 (148)
56 1eh2_A EPS15; calcium binding, 32.0 24 0.00082 27.5 2.3 41 161-202 4-44 (106)
57 2jjz_A Ionized calcium-binding 30.8 43 0.0015 26.6 3.7 65 168-237 46-112 (150)
58 1juo_A Sorcin; calcium-binding 30.7 41 0.0014 27.3 3.6 50 167-216 98-147 (198)
59 1j7q_A CAVP, calcium vector pr 29.5 25 0.00085 24.7 1.8 39 171-209 13-51 (86)
60 2d58_A Allograft inflammatory 29.1 38 0.0013 25.0 2.9 64 169-237 29-94 (107)
61 2mys_B Myosin; muscle protein, 28.4 31 0.0011 26.7 2.4 60 171-237 24-84 (166)
62 2kz2_A Calmodulin, CAM; TR2C, 28.2 19 0.00066 26.5 1.1 44 171-214 28-71 (94)
63 1tiz_A Calmodulin-related prot 27.3 17 0.0006 23.8 0.7 41 173-213 2-42 (67)
64 2pvb_A Protein (parvalbumin); 27.3 53 0.0018 23.8 3.4 45 170-214 39-86 (108)
65 4h62_V Mediator of RNA polymer 27.1 17 0.00058 23.4 0.5 15 186-200 6-20 (31)
66 2f3n_A SH3 and multiple ankyri 27.1 60 0.0021 23.8 3.7 44 174-219 22-67 (76)
67 3j04_B Myosin regulatory light 26.8 18 0.00063 27.2 0.8 61 170-237 5-65 (143)
68 2lc0_A Putative uncharacterize 26.8 21 0.00073 29.7 1.2 25 257-281 83-107 (132)
69 1kdx_B CREB; complex (transcri 26.1 8.4 0.00029 24.9 -1.1 17 165-181 7-23 (28)
70 2i7a_A Calpain 13; calcium-dep 25.8 33 0.0011 28.3 2.2 46 169-215 73-122 (174)
71 3gkx_A Putative ARSC family re 25.7 21 0.0007 28.6 0.9 44 158-205 51-97 (120)
72 2p4g_A Hypothetical protein; p 25.7 49 0.0017 29.7 3.5 30 261-291 177-210 (270)
73 1gjy_A Sorcin, CP-22, V19; cal 25.1 45 0.0015 26.1 2.8 50 167-216 67-116 (167)
74 2k9i_A Plasmid PRN1, complete 24.8 1.2E+02 0.0042 20.0 4.7 31 146-178 17-47 (55)
75 2aao_A CDPK, calcium-dependent 24.8 71 0.0024 24.5 3.9 124 150-295 9-136 (166)
76 2bl0_B Myosin regulatory light 24.4 16 0.00055 27.4 0.1 98 174-288 7-106 (145)
77 1wlz_A DJBP, CAP-binding prote 24.4 30 0.001 25.3 1.5 45 169-213 21-65 (105)
78 2kn2_A Calmodulin; S MAPK phos 24.0 34 0.0012 24.2 1.8 44 171-214 8-51 (92)
79 1avs_A Troponin C; muscle cont 23.8 30 0.001 24.6 1.4 44 171-214 19-62 (90)
80 1fi6_A EH domain protein REPS1 23.7 16 0.00055 26.9 -0.1 34 169-202 6-39 (92)
81 2joj_A Centrin protein; N-term 23.5 18 0.00062 24.6 0.1 42 170-211 5-46 (77)
82 1y1x_A Leishmania major homolo 22.6 71 0.0024 25.8 3.7 47 167-213 88-134 (191)
83 3l78_A Regulatory protein SPX; 22.6 43 0.0015 26.5 2.3 43 159-206 48-92 (120)
84 2znd_A Programmed cell death p 22.6 50 0.0017 25.9 2.6 46 168-213 70-115 (172)
85 3fz4_A Putative arsenate reduc 22.1 26 0.00089 28.0 0.8 44 158-205 50-96 (120)
86 3bq7_A Diacylglycerol kinase d 21.9 72 0.0025 23.6 3.3 45 174-220 27-73 (81)
87 2mys_C Myosin; muscle protein, 21.9 69 0.0024 23.8 3.2 43 171-213 84-126 (149)
88 1c7v_A CAVP, calcium vector pr 21.4 63 0.0021 22.2 2.7 42 171-213 8-50 (81)
89 2jq6_A EH domain-containing pr 21.2 23 0.00079 29.5 0.4 40 161-202 41-80 (139)
90 2qac_A Myosin A tail domain in 21.2 82 0.0028 23.7 3.5 46 171-216 83-128 (146)
91 1wdc_C Scallop myosin; calcium 21.1 66 0.0022 24.5 3.0 44 171-214 83-126 (156)
92 1c07_A Protein (epidermal grow 20.9 17 0.0006 27.0 -0.4 35 169-203 7-41 (95)
93 3i5g_B Myosin regulatory light 20.9 74 0.0025 25.4 3.4 45 171-215 84-128 (153)
94 2azn_A HTP reductase, putative 20.8 71 0.0024 27.4 3.4 30 261-291 132-165 (219)
95 1wy9_A Allograft inflammatory 20.3 66 0.0023 25.4 2.9 46 169-214 45-90 (147)
96 1qjt_A EH1, epidermal growth f 20.2 34 0.0012 25.9 1.1 34 170-203 9-42 (99)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=1.4e-92 Score=632.95 Aligned_cols=184 Identities=35% Similarity=0.686 Sum_probs=180.6
Q ss_pred CCCCCCcCCCCCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHh
Q 020903 117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLS 196 (320)
Q Consensus 117 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~ 196 (320)
|+||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 57999995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccc
Q 020903 197 LKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVG 276 (320)
Q Consensus 197 Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVG 276 (320)
||+|++|||||+||+|+|+|||++++|++|||||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+|||
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG 158 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG 158 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccCcccccccchh
Q 020903 277 PTVVYSFMQVSGIVNDHLLTCFRYQQ 302 (320)
Q Consensus 277 PttvYsFMQAvG~vNDHl~~C~r~~~ 302 (320)
||||||||||+||||||+++|+++.+
T Consensus 159 pt~~YafmQA~G~vndH~~~C~~~~~ 184 (186)
T 2jg6_A 159 PVTVFSFLEAAGLYDAHLKDCPSKPK 184 (186)
T ss_dssp HHHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred hHHHHHHHHHhcccCccccCccccCC
Confidence 99999999999999999999998743
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=1.7e-91 Score=624.71 Aligned_cols=182 Identities=38% Similarity=0.792 Sum_probs=179.1
Q ss_pred CCCCCCcCCCCCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHh
Q 020903 117 IKRCDWITPNSDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLS 196 (320)
Q Consensus 117 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~ 196 (320)
|+||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 47999995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccc
Q 020903 197 LKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVG 276 (320)
Q Consensus 197 Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVG 276 (320)
||+|++|||||+||+|||+|||++++|++|||||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+|||
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvG 158 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVG 158 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCC
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccCcccccccc
Q 020903 277 PTVVYSFMQVSGIVNDHLLTCFRY 300 (320)
Q Consensus 277 PttvYsFMQAvG~vNDHl~~C~r~ 300 (320)
||||||||||+||||||+++|+++
T Consensus 159 pT~~yafmQA~G~VndH~~~C~~~ 182 (183)
T 2ofk_A 159 TTICYSFMQACGLVNDHITGCFCH 182 (183)
T ss_dssp HHHHHHHHHHTTSEECCCTTSTTC
T ss_pred hHHHHHHHHHcCcccCcccCCCCC
Confidence 999999999999999999999986
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.32 E-value=0.00047 Score=62.45 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCccc-chhHHHHHHHHHHHHHHH
Q 020903 145 DDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLL-SEAKLRAIVENAKQMLKV 223 (320)
Q Consensus 145 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIR-Nr~KI~AiI~NArailkv 223 (320)
.+.-.||.|+..++.+..+|..+.+-.+.+ |+.++.+++++|++++...| +| ++.|.+.++++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i--- 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL--- 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT---
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---
Confidence 567799999999999999999988655544 88999999999999999988 46 789999999999876
Q ss_pred HHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhcc
Q 020903 224 QQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGI 289 (320)
Q Consensus 224 ~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG~ 289 (320)
|+|.+.. . + ++ ...-++|.+ .++-|||.|+..||.-.|.
T Consensus 114 ----g~l~~~~-~---~-----------~~-------~~~r~~L~~-~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 114 ----GKLKNLV-K---G-----------DP-------FQSREFLVR-NAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp ----TTHHHHH-H---S-----------CH-------HHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred ----HHHHHHh-c---C-----------Cc-------HHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 4454433 1 1 01 123334442 4788999999999987775
No 4
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=96.50 E-value=0.037 Score=49.73 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHH
Q 020903 149 LFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQML 221 (320)
Q Consensus 149 LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArail 221 (320)
.||.|+-+++-.-.+|..+.+-...|.+.|- +|+.|+..++++|++++..-|.-+ .|.+.++.=|+.++
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~--~KA~~l~~~a~~i~ 101 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYR--NKARNIQKLCAMLI 101 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChH--HHHHHHHHHHHHHH
Confidence 6999999999999999999998888888874 899999999999999998888755 57777877777775
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=96.46 E-value=0.025 Score=50.48 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhC
Q 020903 149 LFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFG 228 (320)
Q Consensus 149 LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~G 228 (320)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|+..++++|++++..-|.- +.|.+.++.=|+.+++ ++|
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~--~~KA~~l~~~a~~i~~---~~~ 107 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLS--NQRAEQLKELARVVIN---DYG 107 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHH---HhC
Confidence 799999999999999999999988888887 579999999999999999888865 5678888888887754 322
Q ss_pred CHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhc
Q 020903 229 SFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSG 288 (320)
Q Consensus 229 SF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG 288 (320)
+ ++|. + -++|. .++-|||.|+..+|.-++
T Consensus 108 g----------------------~~p~-~------~~~L~--~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 108 G----------------------RVPR-N------RKAIL--DLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp T----------------------SCCS-C------HHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred C----------------------CchH-H------HHHHH--hCCCCcHHHHHHHHHHhc
Confidence 1 2342 1 12344 478999999998887553
No 6
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=96.02 E-value=0.029 Score=49.55 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHH
Q 020903 149 LFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLK 222 (320)
Q Consensus 149 LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailk 222 (320)
.||.|+-+++..-.+|..+.+-.+.|.+.| .+|+.|+..++++|+.++..-|. .+.|.+.+++=|+.+.+
T Consensus 29 pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 29 PFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE 98 (211)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 799999999999999999987666665544 46999999999999999988886 46788888888887753
No 7
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=95.99 E-value=0.094 Score=49.28 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHH
Q 020903 146 DRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQ 225 (320)
Q Consensus 146 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~ 225 (320)
.+..||.|+-+++-.-.+|..|..-...|.+.|- +|+.||..++++|++++..-|.- + |.+.+++=|+.++ +
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~---~ 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVV---E 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHH---H
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHH---H
Confidence 4678999999999999999999999888888875 89999999999999999988886 3 7788888888775 3
Q ss_pred hhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHh
Q 020903 226 EFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVS 287 (320)
Q Consensus 226 E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAv 287 (320)
+||+ ++|.. .++|.+. ++-|||.|+..+|.-+
T Consensus 118 ~~~g----------------------~~p~~-------~~~Ll~~-LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 118 ELGG----------------------HMPRT-------AETLQQL-LPGVGRYTAGAIASIA 149 (287)
T ss_dssp HSTT----------------------CCCSS-------HHHHHHH-STTCCHHHHHHHHHHH
T ss_pred HhCC----------------------CCcHH-------HHHHHHH-cCCCCHHHHHHHHHHh
Confidence 4442 12421 1233321 5789999988877643
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.84 E-value=0.062 Score=48.42 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCC--ChHHHhcCCHHHHHhhhcCCCcc
Q 020903 127 SDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNF--DISSVSQFTEKKLLSLKVNGSLL 204 (320)
Q Consensus 127 ~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~F--Dp~kVA~~~e~dIe~Ll~d~~II 204 (320)
.||.+..-.+.--|.+.....-.||.|+-.+...-.||..+.+-...|.+.|..+ +|+.|+..++++|.. -|
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~----~G-- 102 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ----AG-- 102 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH----TT--
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH----cC--
Confidence 5776655444444443333344899999999999999999999999999999777 999999999999833 23
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHH
Q 020903 205 LSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFM 284 (320)
Q Consensus 205 RNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFM 284 (320)
-.++|.+.++.=|+++++ .+.++.... .+|. +..-++|. .++-|||-|+-.+|
T Consensus 103 ~~~~KA~~I~~~A~~i~~---~~~~~~~l~-----------------~~p~-----~~~~~~L~--~lpGIG~kTA~~il 155 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVES---GRLDFTELE-----------------GAEA-----TTVIEKLT--AIKGIGQWTAEMFM 155 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT---TSSCHHHHT-----------------TSCH-----HHHHHHHH--TSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---CCCCHHHHh-----------------cCCH-----HHHHHHHH--hCCCcCHHHHHHHH
Confidence 466789999998888753 222333211 1221 23444565 58999999999887
Q ss_pred HH-hc
Q 020903 285 QV-SG 288 (320)
Q Consensus 285 QA-vG 288 (320)
.- .|
T Consensus 156 l~alg 160 (233)
T 2h56_A 156 MFSLG 160 (233)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 75 45
No 9
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=95.78 E-value=0.079 Score=47.26 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhC
Q 020903 149 LFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFG 228 (320)
Q Consensus 149 LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~G 228 (320)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|+..++++|++++..-|.- + |.+.+++=|+.+++ ++|
T Consensus 30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~--~-kA~~l~~~a~~i~~---~~~ 101 (225)
T 1kg2_A 30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT---LHG 101 (225)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHHHHHHH---HST
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH--H-HHHHHHHHHHHHHH---HhC
Confidence 699999999999999999988777776665 379999999999999999888875 2 78888888887753 322
Q ss_pred CHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHh
Q 020903 229 SFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVS 287 (320)
Q Consensus 229 SF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAv 287 (320)
+ ++|. + -++|. .++-|||.|+..+|.-+
T Consensus 102 g----------------------~~p~-~------~~~L~--~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 102 G----------------------KFPE-T------FEEVA--ALPGVGRSTAGAILSLS 129 (225)
T ss_dssp T----------------------SCCC-S------HHHHH--TSTTCCHHHHHHHHHHH
T ss_pred C----------------------CchH-H------HHHHh--cCCCCcHHHHHHHHHHh
Confidence 1 2342 1 12444 47899999998888744
No 10
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=95.67 E-value=0.11 Score=46.24 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHhHHHHHHH-hcCCC----hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHH
Q 020903 149 LFELLVFSQALAELSWPAILSRRDIFRKL-FDNFD----ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKV 223 (320)
Q Consensus 149 LFE~L~LEgfQAGLSW~tILkKRe~fR~A-F~~FD----p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv 223 (320)
-||.|+-.+...-.+|..+.+-...|.+. |-..+ |+.|+..++++|++++..-|.- +.|.+.++.=|+.++
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~--~~KA~~L~~~a~~i~-- 105 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFY--NQKAKRLIDLSGNIL-- 105 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCc--HHHHHHHHHHHHHHH--
Confidence 58999999999999999999888888777 54422 9999999999999999888854 567788888787764
Q ss_pred HHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhc
Q 020903 224 QQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSG 288 (320)
Q Consensus 224 ~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG 288 (320)
+++|+|...- +| ..-+.|. .++-|||-|+..+|.-+.
T Consensus 106 -~~~~~l~~~~------------------~~-------~~~~~L~--~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 106 -KDFQSFENFK------------------QE-------VTREWLL--DQKGIGKESADAILCYAC 142 (218)
T ss_dssp -HHHSSHHHHH------------------HH-------CCHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred -HhcCChhhcc------------------ch-------HHHHHHH--cCCCcCHHHHHHHHHHHC
Confidence 5567765320 01 1122344 578899999988887543
No 11
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.59 E-value=0.057 Score=48.50 Aligned_cols=128 Identities=20% Similarity=0.147 Sum_probs=91.8
Q ss_pred CCchhhhhhhcCCCc-cccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCccc
Q 020903 127 SDPLYISFHDEEWGV-PVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLL 205 (320)
Q Consensus 127 ~dply~~YHD~EWG~-Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIR 205 (320)
.||.+..-.+.--|. +.....-.||.|+-.+.-.-.||..+.+-...|.+.|...+|+.|+..++++|.. -| -
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~----~G--~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRG----VG--L 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHH----TT--C
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHH----CC--C
Confidence 688776666554444 3334445899999999999999999999888888888778999999999998833 22 3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHH
Q 020903 206 SEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQ 285 (320)
Q Consensus 206 Nr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQ 285 (320)
.+.|.+.++.=|+.+.+ ...+|+. ...+| .+.+-+.|. .++-|||-|+..+|.
T Consensus 112 ~~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~-----~~e~~~~L~--~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP-----DELVIAELV--QLPGIGRWTAEMFLL 164 (225)
T ss_dssp CHHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC-----HHHHHHHHH--cCCCCCHHHHHHHHH
Confidence 46799999988888754 1112221 11222 134445565 589999999998887
Q ss_pred Hh
Q 020903 286 VS 287 (320)
Q Consensus 286 Av 287 (320)
-+
T Consensus 165 ~~ 166 (225)
T 2yg9_A 165 FA 166 (225)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 12
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=95.49 E-value=0.077 Score=46.93 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHH
Q 020903 144 YDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKV 223 (320)
Q Consensus 144 ~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv 223 (320)
...+-.||.|+-++.-.-.+|..+.+-.+.| |+.++..++++|++++...++=-.+.|.+.+.+-|+++++.
T Consensus 28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~ 99 (207)
T 3fhg_A 28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR 99 (207)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 3567799999999999999999999877777 68899999999999888766534678999999888876431
Q ss_pred HHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhcc
Q 020903 224 QQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGI 289 (320)
Q Consensus 224 ~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG~ 289 (320)
. .|++..|- +- .+ +..-++|. .++-|||-|+-.+|..+|.
T Consensus 100 ~--~~~l~~~~-~~-------------------~~--~~~~~~L~--~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 100 L--KEEIKPLA-DE-------------------DQ--QLARERLL--NIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp H--HHHHHHHH-HH-------------------CH--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred h--hhhHHHHh-CC-------------------CH--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence 0 12233321 10 11 23444554 6899999999999987675
No 13
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=94.60 E-value=0.37 Score=45.64 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHH
Q 020903 146 DRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLK 222 (320)
Q Consensus 146 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailk 222 (320)
.+--||.|+-+++..-.+|.++..-...|.+.| .+|+.+|..++++|+.++..-|.- + |.+.++.=|+.+++
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT 107 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence 344689999999999999999999888888877 589999999999999999888874 4 78888888888754
No 14
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=94.17 E-value=0.27 Score=42.39 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccch
Q 020903 150 FELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSE 207 (320)
Q Consensus 150 FE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr 207 (320)
|+.|+-+++.+=-+|.+|..--+.|.+.|- +|+.+|+.++++|+.+..--|.-++|
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~K 87 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLR 87 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHH
Confidence 899999999999999999987777766664 89999999999999999999987665
No 15
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.96 E-value=0.3 Score=43.92 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=91.2
Q ss_pred CCchhhhhhhcCCCcccc--chH-HHHHHHHHHHHhccCcHHHHHHhHHHHHHHh---cCC-ChHHHhcCCHHHHHhhhc
Q 020903 127 SDPLYISFHDEEWGVPVY--DDR-KLFELLVFSQALAELSWPAILSRRDIFRKLF---DNF-DISSVSQFTEKKLLSLKV 199 (320)
Q Consensus 127 ~dply~~YHD~EWG~Pv~--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF---~~F-Dp~kVA~~~e~dIe~Ll~ 199 (320)
.||.+..-.+.--|..+. ..+ -.||.|+-.+...-.||..+.+-...| +.| ..| +|+.|+..++++|..
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~--- 100 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA--- 100 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence 688877666665554442 122 479999999999999999999999999 888 345 999999999998733
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHhhCCHh--hhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccch
Q 020903 200 NGSLLLSEAKLRAIVENAKQMLKVQQEFGSFS--KYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGP 277 (320)
Q Consensus 200 d~~IIRNr~KI~AiI~NArailkv~~E~GSF~--~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGP 277 (320)
+=-.++|.+.++.=|+++.+ |.+. +.+ .+++ .+.+-+.|. .++-|||
T Consensus 101 ---~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l----------------~~~~-----~~e~~~~L~--~l~GIG~ 149 (228)
T 3s6i_A 101 ---CGFSARKIDSLKSIAEATIS-----GLIPTKEEA----------------ERLS-----NEELIERLT--QIKGIGR 149 (228)
T ss_dssp ---HTCCHHHHHHHHHHHHHHHH-----TSSCCHHHH----------------TTSC-----HHHHHHHHT--TSTTCCH
T ss_pred ---cCCCHHHHHHHHHHHHHHHc-----CCCCChHHH----------------hcCC-----HHHHHHHHH--hCCCcCH
Confidence 22466799999998888862 4331 112 1111 144555665 5999999
Q ss_pred hhHHHHHH-Hhcc
Q 020903 278 TVVYSFMQ-VSGI 289 (320)
Q Consensus 278 ttvYsFMQ-AvG~ 289 (320)
-|+..+|. +.|.
T Consensus 150 ~TA~~ill~~lg~ 162 (228)
T 3s6i_A 150 WTVEMLLIFSLNR 162 (228)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhCCC
Confidence 99988875 5564
No 16
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=91.78 E-value=0.86 Score=42.20 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=89.7
Q ss_pred CCcCCCCCchhhhhhhcCCCccccc--hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC-----------C-ChHHH
Q 020903 121 DWITPNSDPLYISFHDEEWGVPVYD--DRKLFELLVFSQALAELSWPAILSRRDIFRKLFDN-----------F-DISSV 186 (320)
Q Consensus 121 ~W~~~~~dply~~YHD~EWG~Pv~D--Dr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~-----------F-Dp~kV 186 (320)
.|.. .||.+..-.+.--|.++.- ..-.||.|+-.+...-.||..+.+-...|.+.|-. | +|+.|
T Consensus 90 ~~~~--~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~l 167 (295)
T 2jhn_A 90 RFMD--GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAI 167 (295)
T ss_dssp HHHH--TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHH
T ss_pred Hhhc--cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHH
Confidence 5653 5777766666555655543 45589999999999999999999999999999864 4 79999
Q ss_pred hcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHH
Q 020903 187 SQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKD 266 (320)
Q Consensus 187 A~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKd 266 (320)
+..++++|..+ + -.++|.+.|+.=|++ |+|... .++|. +.+-+.
T Consensus 168 a~~~~~~Lr~~----G--~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~~-----~e~~~~ 211 (295)
T 2jhn_A 168 LKAGVEGLREC----G--LSRRKAELIVEIAKE--------ENLEEL-----------------KEWGE-----EEAYEY 211 (295)
T ss_dssp HHHHHHHHHHT----T--CCHHHHHHHHHHHTC--------SSGGGG-----------------GGSCH-----HHHHHH
T ss_pred HcCCHHHHHHc----C--CCHHHHHHHHHHHHC--------CCHhhh-----------------hcCCH-----HHHHHH
Confidence 99998887332 2 356677777666655 443321 12231 334455
Q ss_pred HHhcCCcccchhhHHHHHHH-hc
Q 020903 267 LMQKGFRCVGPTVVYSFMQV-SG 288 (320)
Q Consensus 267 LKkrGFkFVGPttvYsFMQA-vG 288 (320)
|. .++-|||-|+-.+|.. .|
T Consensus 212 L~--~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 212 LT--SFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HH--TSTTCCHHHHHHHHHHTTC
T ss_pred Hh--cCCCcCHHHHHHHHHHccC
Confidence 65 5899999999887764 56
No 17
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=91.16 E-value=0.46 Score=42.76 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=71.7
Q ss_pred chHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHH
Q 020903 145 DDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQ 224 (320)
Q Consensus 145 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~ 224 (320)
+.+-.||.|+..+.-+--+|..+.+--+.++ +.++.+++++|++++..-|.=-.+.|-+-+++-|+ +
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~---- 106 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F---- 106 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G----
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h----
Confidence 5677999999999999999999987666663 66899999999999988773223445444544444 2
Q ss_pred HhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhcc
Q 020903 225 QEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGI 289 (320)
Q Consensus 225 ~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG~ 289 (320)
|.+-+.+-++ .++ ...-++|.+ .++-|||-|+..+|.-+|.
T Consensus 107 ---~~l~~~~~~~-------------~~~-------~~~re~Ll~-~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 107 ---KNIKDIVESF-------------ENE-------KVAREFLVR-NIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp ---CCHHHHHHHS-------------SSH-------HHHHHHHHH-HSTTCCHHHHHHHHHHTTC
T ss_pred ---hHHHHHhccc-------------CCc-------HHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 2222211111 011 122233431 4788999999999987775
No 18
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=89.92 E-value=0.9 Score=41.02 Aligned_cols=129 Identities=16% Similarity=0.080 Sum_probs=88.5
Q ss_pred CCchhhhhhhcCCCcc--ccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC---C-ChHHHhcCCHHHHHhhhcC
Q 020903 127 SDPLYISFHDEEWGVP--VYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDN---F-DISSVSQFTEKKLLSLKVN 200 (320)
Q Consensus 127 ~dply~~YHD~EWG~P--v~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~---F-Dp~kVA~~~e~dIe~Ll~d 200 (320)
.||.+..-.+.--|.. ....+-.||.|+-.+.-.-.||..+.+-...|.+.|.. | +|+.|+..++++|..
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~---- 111 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE---- 111 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----
Confidence 4776655555544522 22223379999999999999999999999999999975 5 999999999998743
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhH
Q 020903 201 GSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVV 280 (320)
Q Consensus 201 ~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttv 280 (320)
-++ .++|.+.++.=|+++.+ .+.+++.. +.. +| .+.+-++|. .++-|||-|+
T Consensus 112 ~Gl--~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~----------------~~-----~~~~~~~L~--~l~GIG~~TA 163 (232)
T 4b21_A 112 CGF--SKLKSQEIHIVAEAALN--KQIPSKSE-IEK----------------MS-----EEELMESLS--KIKGVKRWTI 163 (232)
T ss_dssp TTC--CHHHHHHHHHHHHHHHT--TCSCCHHH-HHH----------------SC-----HHHHHHHHT--TSTTCCHHHH
T ss_pred cCC--cHHHHHHHHHHHHHHHh--CCCCCHHH-HHc----------------CC-----HHHHHHHHH--hCCCcCHHHH
Confidence 354 56899999888888753 00112222 111 11 134445564 4899999999
Q ss_pred HHHHHHh
Q 020903 281 YSFMQVS 287 (320)
Q Consensus 281 YsFMQAv 287 (320)
-.+|.-+
T Consensus 164 ~~ill~a 170 (232)
T 4b21_A 164 EMYSIFT 170 (232)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8877643
No 19
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=89.08 E-value=1.6 Score=40.43 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC-----------C-ChHHHhcCCHHHH
Q 020903 127 SDPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDN-----------F-DISSVSQFTEKKL 194 (320)
Q Consensus 127 ~dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~-----------F-Dp~kVA~~~e~dI 194 (320)
.||.+..-.+.-.|..+.. .-.||.|+-.+.-.-.||..+.+-...+.++|-. | +|+.|+..+++++
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 4777766555667766655 6689999999999999999999999999998754 5 9999999999999
Q ss_pred HhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcc
Q 020903 195 LSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRC 274 (320)
Q Consensus 195 e~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkF 274 (320)
.++ ++= .|.+.++.=|+++.+ .+.++.... . .+ .+..-+.|. .++-
T Consensus 173 ~~~----g~g---~Ra~~I~~~A~~i~~---g~~~l~~l~-~----------------~~-----~~~~~~~L~--~lpG 218 (290)
T 3i0w_A 173 EEC----TAG---FRAKYLKDTVDRIYN---GELNLEYIK-S----------------LN-----DNECHEELK--KFMG 218 (290)
T ss_dssp HHT----TCG---GGHHHHHHHHHHHHT---TSSCHHHHH-H----------------SC-----HHHHHHHHT--TSTT
T ss_pred HHc----CCc---hHHHHHHHHHHHHHh---CCCCHHHHh-c----------------CC-----HHHHHHHHH--hCCC
Confidence 884 331 278888888887742 223343221 1 01 123444554 6899
Q ss_pred cchhhHHHHHH-Hhccc
Q 020903 275 VGPTVVYSFMQ-VSGIV 290 (320)
Q Consensus 275 VGPttvYsFMQ-AvG~v 290 (320)
|||-|+-.+|. +.|..
T Consensus 219 IG~~TA~~ill~~lg~p 235 (290)
T 3i0w_A 219 VGPQVADCIMLFSMQKY 235 (290)
T ss_dssp CCHHHHHHHHHHHHCCT
T ss_pred cCHHHHHHHHHHhCCCC
Confidence 99988877665 45643
No 20
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=82.81 E-value=2.1 Score=34.04 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=38.9
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQM 220 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArai 220 (320)
+-|.+.|.+.+.+.+..|||+|++.+--. ..-+|+||...|+.-|..
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 56888999999999999999999997643 346899999988865554
No 21
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=80.84 E-value=3.5 Score=34.44 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHH
Q 020903 164 WPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQM 220 (320)
Q Consensus 164 W~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArai 220 (320)
|..-|+ -.-|.+.|.+-+.+.+..++|+|++.+--. ..-+|+||...|+--+..
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhh
Confidence 544433 377999999999999999999999998643 358999999888765554
No 22
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=76.87 E-value=2.6 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.378 Sum_probs=33.5
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|...| .+|| .+.|+.++++|+.+|--.. .-||+||.+.|+.
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~--~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIAD--PEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 5677777 6895 8999999999999876432 3699999876654
No 23
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=76.04 E-value=4.2 Score=30.77 Aligned_cols=46 Identities=11% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
+.|.+.| .+|| .+.+..++++|+.+|--.. +-||.||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITL--MGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCC--hhHHHHHHHHHHHHHH
Confidence 4566777 4688 8999999999999875432 3599999988876553
No 24
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=75.71 E-value=7.3 Score=35.58 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=84.3
Q ss_pred CCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC----------C-ChHHHhcCCHHHHHhhhcCCCcccch
Q 020903 139 WGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDN----------F-DISSVSQFTEKKLLSLKVNGSLLLSE 207 (320)
Q Consensus 139 WG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~----------F-Dp~kVA~~~e~dIe~Ll~d~~IIRNr 207 (320)
-|..+....-.||.|+-.+...-.||..+.+-...|.+.|-. | +|+.|+..++++|.. -+ -.+
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~----~G--~~~ 176 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKA----LG--MPL 176 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHH----TT--SCH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHH----cC--CCH
Confidence 344444445589999999999999999999999999988743 4 799999999999833 22 336
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHH-H
Q 020903 208 AKLRAIVENAKQMLKVQQEFGSFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQ-V 286 (320)
Q Consensus 208 ~KI~AiI~NArailkv~~E~GSF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQ-A 286 (320)
.|.+.++.=|+++.+ |.++ . +.+. + .+.+-+.|. .++-|||-|+-.+|. +
T Consensus 177 ~ra~~i~~~A~~~~~-----~~~~--------~-----------~~~~-~--~~~~~~~L~--~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 177 KRAEALIHLANAALE-----GTLP--------M-----------TIPG-D--VEQAMKTLQ--TFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHHHHHHHHHH-----TCSC--------S-----------SCCS-C--HHHHHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----CCCC--------c-----------cccC-C--HHHHHHHHh--cCCCcCHHHHHHHHHHh
Confidence 788888888888753 1111 0 1121 1 133444554 589999999987766 4
Q ss_pred hcc-----ccCccc
Q 020903 287 SGI-----VNDHLL 295 (320)
Q Consensus 287 vG~-----vNDHl~ 295 (320)
.|. +.||.+
T Consensus 228 lg~~d~~pvdd~~~ 241 (282)
T 1mpg_A 228 WQAKDVFLPDDYLI 241 (282)
T ss_dssp SCCSSCCCTTCHHH
T ss_pred CCCCCcCccccHHH
Confidence 552 456664
No 25
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=74.84 E-value=4 Score=33.31 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=36.9
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
.-|.+.|.+-+.+.+..|||+|++.+--. ..-+|+||...|+.-|.
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVID 89 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHH
Confidence 45777888889999999999999997743 34689999998886544
No 26
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=73.52 E-value=5 Score=31.34 Aligned_cols=45 Identities=16% Similarity=0.391 Sum_probs=32.7
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+.|.+.| .+|| .+.|+.++++|+.+|--.. +-+|.||-..|..-|
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~--~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSLGITL--VGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHH
Confidence 3455555 5688 8999999999998873322 359999988876543
No 27
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=72.91 E-value=6.5 Score=29.52 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=35.2
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQM 220 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArai 220 (320)
+.|.+ .++|.+.+..|+++|+.+|--. +=+|.||...|..=|..
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~~ 62 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQA 62 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHHH
Confidence 56665 4689999999999999998776 55999999888655443
No 28
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=71.56 E-value=10 Score=36.24 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=84.7
Q ss_pred CchhhhhhhcCCCccccchHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHhcC-------------CChHHHhcCCHHHH
Q 020903 128 DPLYISFHDEEWGVPVYDDRKLFELLVFSQALAELSWPAILSRRDIFRKLFDN-------------FDISSVSQFTEKKL 194 (320)
Q Consensus 128 dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF~~-------------FDp~kVA~~~e~dI 194 (320)
||.+..-.+.--|..+.. .-.||.|+-.+...-.+|..+.+-...|.+.|-. -+|+.|+..+.++
T Consensus 132 Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee- 209 (360)
T 2xhi_A 132 DSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEA- 209 (360)
T ss_dssp CHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHH-
T ss_pred CHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHH-
Confidence 555444444455655544 4689999999999999999999999999998743 3799999986432
Q ss_pred HhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhCC-HhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCc
Q 020903 195 LSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGS-FSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFR 273 (320)
Q Consensus 195 e~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GS-F~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFk 273 (320)
.+..-++ . .|.+.|+.=|+++. +++|+ ++ +-. ...+| .+..-+.|. .++
T Consensus 210 --~Lr~~Gl-~--~RA~~I~~~A~~i~---~~~~G~~~--L~~-------------l~~~~-----~~~~~~~L~--~Lp 259 (360)
T 2xhi_A 210 --HLRKLGL-G--YRARYVSASARAIL---EEQGGLAW--LQQ-------------LRESS-----YEEAHKALC--ILP 259 (360)
T ss_dssp --HHHHTTC-T--THHHHHHHHHHHHH---HTTCTHHH--HHG-------------GGTSC-----HHHHHHHHT--TST
T ss_pred --HHHHcCC-c--HHHHHHHHHHHHHH---hccCCccC--HHH-------------HhcCC-----HHHHHHHHH--hCC
Confidence 2333555 3 47888888888774 34432 11 100 11122 123444554 588
Q ss_pred ccchhhHHHHHHH-hcc
Q 020903 274 CVGPTVVYSFMQV-SGI 289 (320)
Q Consensus 274 FVGPttvYsFMQA-vG~ 289 (320)
-|||-|+-.+|.. .|.
T Consensus 260 GIGp~TA~~ill~alg~ 276 (360)
T 2xhi_A 260 GVGTCVADKICLMALDK 276 (360)
T ss_dssp TCCHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 9999999877765 353
No 29
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=70.29 E-value=4.3 Score=31.19 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=30.4
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVE 215 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~ 215 (320)
+.|.+.| .+|| .+.|+.++++|+.+|--.. +-+|+||-..|+
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~--~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQMGITL--PGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCC--HHHHHHHHHHHH
Confidence 3445555 4788 8899999999998873322 358999987664
No 30
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=70.22 E-value=6.5 Score=30.56 Aligned_cols=46 Identities=13% Similarity=0.397 Sum_probs=34.5
Q ss_pred HHHHHHhc--CC-ChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 172 DIFRKLFD--NF-DISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 172 e~fR~AF~--~F-Dp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
+.|...|. +| |.+.+..|+++|+.+|--.. +-||.||...|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITA--ITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 45666664 56 78999999999999875432 4599999988877554
No 31
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.20 E-value=3 Score=33.04 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|.+.| .+|| .+.|..++++|+.+|--.. ..||+||...|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~--~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITE--ERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4567777 4688 6899999999999885542 4799999876654
No 32
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=68.50 E-value=7.7 Score=29.13 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.0
Q ss_pred HHHHHh--cCC-ChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHH
Q 020903 173 IFRKLF--DNF-DISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQM 220 (320)
Q Consensus 173 ~fR~AF--~~F-Dp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArai 220 (320)
.|.+.| .+| |.+.+..++++|+..|--.. .-||.||...|..-+.-
T Consensus 25 ~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 25 QYKESFANAGFTSFDVVSQMMMEDILRVGVTL--AGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 455555 367 78999999999999764332 35999999888876654
No 33
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=66.78 E-value=5.6 Score=30.84 Aligned_cols=45 Identities=7% Similarity=0.155 Sum_probs=32.3
Q ss_pred HHHHHHhc--CCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLFD--NFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF~--~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+.|.+.|. +|| .+.|..|+++|+.+|--.. +-||+||...|..-+
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GHrkkIl~ai~~L~ 75 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGISP--TGHRRRILKQLQIIL 75 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCC--HhHHHHHHHHHHHHH
Confidence 34555563 574 7899999999999874322 469999987776643
No 34
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.42 E-value=7.9 Score=30.32 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=32.7
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+.|.+.| .+|| .+.+..|+++|+.+|--.. +-||.||...|..-+
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~l~ 82 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITL--AGHQKKILNSIHSMR 82 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHH
Confidence 3455555 3688 8999999999999875432 359999987776543
No 35
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=66.10 E-value=6.9 Score=30.28 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=31.8
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|.+.| .+|| .+.|+.++++|+.+|--.. +-+|+||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~--~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4455555 4688 8999999999999874322 3599999887764
No 36
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=65.05 E-value=9.3 Score=29.08 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=34.4
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+.|...| .+|| .+.+..++++|+.+|--.. +-+|+||...|..-|
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLGLK 76 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCC--TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHH
Confidence 4566666 4688 8999999999998886543 359999988877644
No 37
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=59.91 E-value=10 Score=29.48 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.3
Q ss_pred HHHHHHhc--CCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLFD--NFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF~--~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|.+.|. +|| .+.|..++++|+.+|--.. +-||+||...|..
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~--~GHRkkIL~aI~~ 84 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQD--PAHKRLLLDTLQL 84 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 56777774 574 7999999999999875432 4689999877653
No 38
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.46 E-value=6.6 Score=30.10 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
+.|...| .+|| .+.+..|+++|+.+|--.. +-||+||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRL--PGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 4455555 3688 8999999999998865432 3599999888876554
No 39
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=56.08 E-value=12 Score=25.62 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCcccchhhHHHHHHHhccc
Q 020903 260 AELISKDLMQKGFRCVGPTVVYSFMQVSGIV 290 (320)
Q Consensus 260 S~~iSKdLKkrGFkFVGPttvYsFMQAvG~v 290 (320)
.+.|+..|+++|+ -|+..|||-.|...|++
T Consensus 22 ~~el~~~l~~~~~-~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 22 QDELVDMLKQDGY-KVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHHHHcCCE
Confidence 4788999999886 58999999999999987
No 40
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=55.77 E-value=8.3 Score=34.14 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=37.9
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+-|.+.|.+.+.+.+..|||+|++.+--.. -+|+||...|+.-|
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT~---GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCch---HHHHHHHHHHHHHH
Confidence 557889999999999999999999997773 79999988887654
No 41
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=53.46 E-value=12 Score=29.64 Aligned_cols=43 Identities=7% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|.+.| .+|| .+.+..++++|+.+|--.. +-+|.||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~--~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGISA--TGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCC--hhHHHHHHHHHHH
Confidence 3455555 4788 8999999999999875442 4689999876654
No 42
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=45.66 E-value=19 Score=30.15 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=31.8
Q ss_pred HHHHHHhc--CCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLFD--NFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF~--~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|.+.|. +||.+.+..|+++|+.+|--.. .-||+||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 34555664 8999999999999998774432 2489998776654
No 43
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.68 E-value=35 Score=25.34 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=32.6
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
+.|++ .+.|-+.+..++++|+.+|.-. -+-||.||...|..-|.
T Consensus 32 ~~F~~--~~I~G~~Ll~Lt~~dL~~LGI~--~~ghr~~il~~I~~L~~ 75 (83)
T 2ean_A 32 KNFER--EKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLCA 75 (83)
T ss_dssp HHHHH--HTCCHHHHTTCCHHHHHHHTCC--CSHHHHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHhhCCHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 44444 4678899999999999886543 24699999888876554
No 44
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=43.11 E-value=35 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHh--cCCC-hHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHH
Q 020903 173 IFRKLF--DNFD-ISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQM 220 (320)
Q Consensus 173 ~fR~AF--~~FD-p~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArai 220 (320)
.|...| .+|| .+.|..++++|+.+|--.. .-||.||-..|..-+.+
T Consensus 93 qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~--~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 93 QYYKVLVDNGYENIDFITDITWEDLQEIGITK--LGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCchHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHHHH
Confidence 344555 4788 8999999999998775432 35899998888655544
No 45
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=41.34 E-value=44 Score=25.50 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhc
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNF 237 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsF 237 (320)
...++++|..||...=-.++-+++..+|..-++--+...|..++... ...-+|.+|+--+
T Consensus 15 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~-------~g~i~~~eF~~~~ 74 (153)
T 2ovk_B 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC-------PGQLNFTAFLTLF 74 (153)
T ss_dssp HHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS-------SSCCCSHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc-------CCCCCHHHHHHHH
Confidence 36788999999998888899999999999888877777787777664 2223688877554
No 46
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=40.47 E-value=20 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKL 210 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI 210 (320)
.+.++++|..||...=-.++.+++..++..-++--+...+
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~ 44 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEEL 44 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHH
Confidence 4678999999999887788999999999876654444433
No 47
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=38.22 E-value=22 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=31.7
Q ss_pred HHHHHHhc--CCC-hHHHh--cCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 172 DIFRKLFD--NFD-ISSVS--QFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 172 e~fR~AF~--~FD-p~kVA--~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
+.|.+.|. +|| .+.|+ .++++|+.+|--.. +-||+||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~--~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISD--PQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 56777774 566 67888 89999999886542 3599999877654
No 48
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=38.06 E-value=21 Score=26.77 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=33.0
Q ss_pred HHHHHHhc--CC-ChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLFD--NF-DISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF~--~F-Dp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+.|...|. +| |.+.+..++++|+.+|--.. +-||+||...|..-|
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVTL--AGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHH
Confidence 45777775 43 78999999999999964432 469999987776544
No 49
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=37.79 E-value=52 Score=24.11 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=31.8
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
+.|++ .+.|-+.+..++++|+.+|.-.. +-||.||...|..-+.
T Consensus 28 ~~F~~--~~i~G~~Ll~L~~~dL~~lGI~~--~ghr~~il~~I~~L~~ 71 (80)
T 3bs5_B 28 KNFER--EKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLCA 71 (80)
T ss_dssp HHHHH--HTCCHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCCCHHHHHHCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 44544 56788999999999998764332 4689999877766443
No 50
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=36.48 E-value=22 Score=24.80 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=35.5
Q ss_pred hHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHH
Q 020903 170 RRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVE 215 (320)
Q Consensus 170 KRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~ 215 (320)
..+.++++|..||...=-.++-+++..++..-++--+...|..++.
T Consensus 12 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 12 EQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3467899999999988777899999999988776666666555543
No 51
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=36.42 E-value=70 Score=23.02 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=31.9
Q ss_pred HHHHHHh--cCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHH
Q 020903 172 DIFRKLF--DNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAK 218 (320)
Q Consensus 172 e~fR~AF--~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAr 218 (320)
+.|...| .+.|-+.+..++++|+..|--.. +-+|.||...|..-|
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~--~g~r~kil~~i~~L~ 68 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMTS--SQDRALVKKKLKEMK 68 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCC--HHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCC--HHHHHHHHHHHHHHH
Confidence 4466666 35677899999999987654321 468999987776644
No 52
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=35.81 E-value=12 Score=28.54 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=35.8
Q ss_pred HHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHH
Q 020903 172 DIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVE 215 (320)
Q Consensus 172 e~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~ 215 (320)
+.+|+||.-||.+.=-.++-+++..+|..-++--+...|+.++.
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999999889999999999987777667766666554
No 53
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=35.15 E-value=28 Score=27.20 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 167 ILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 167 ILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
++.+.+.++++|..||...=-.++.+++..++..-+.--+...++.++..
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 114 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33445789999999999988889999999999877665666667666654
No 54
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=34.05 E-value=29 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.361 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCcccchhhHHHHHHHhccc
Q 020903 258 PKAELISKDLMQKGFRCVGPTVVYSFMQVSGIV 290 (320)
Q Consensus 258 ~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG~v 290 (320)
+....+++.|...||+++.....+.||+..|+-
T Consensus 37 ~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~ 69 (143)
T 2yvq_A 37 PRFLGVAEQLHNEGFKLFATEATSDWLNANNVP 69 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCe
Confidence 445678999999999999888889999999853
No 55
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=32.61 E-value=40 Score=27.96 Aligned_cols=42 Identities=12% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHHh--cCCCh-HHHh--cCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 173 IFRKLF--DNFDI-SSVS--QFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 173 ~fR~AF--~~FDp-~kVA--~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
.|.+.| .+||- +.++ .|+++|+..|--..- -||.||...|..
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~--ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNS--GHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSST--TSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCH--HHHHHHHHHHHH
Confidence 455666 57776 6676 999999998765432 499999877765
No 56
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=32.04 E-value=24 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.282 Sum_probs=31.1
Q ss_pred cCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCC
Q 020903 161 ELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGS 202 (320)
Q Consensus 161 GLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~ 202 (320)
|..|..--..++.|+++|.-||. .=-.++-+++..+|..-+
T Consensus 4 ~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g 44 (106)
T 1eh2_A 4 GSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK 44 (106)
T ss_dssp --CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC
Confidence 45566545667889999999998 655688899998888766
No 57
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=30.80 E-value=43 Score=26.57 Aligned_cols=65 Identities=8% Similarity=0.165 Sum_probs=45.3
Q ss_pred HHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhC--CHhhhhhhc
Q 020903 168 LSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFG--SFSKYCWNF 237 (320)
Q Consensus 168 LkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~G--SF~~ylWsF 237 (320)
-...+.++++|..||.+.=-.++-+++..+|..-+.--+...|+.++..+- . ...| +|.+|+--+
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~D----~-d~dg~I~~~eF~~~~ 112 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVT----G-GVSDTISYRDFVNMM 112 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH----T-TSCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHC----C-CCCCcEeHHHHHHHH
Confidence 355778999999999988888999999999987776556666665554321 1 1122 688877443
No 58
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=30.68 E-value=41 Score=27.30 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 167 ILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 167 ILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
++.+.+.++++|..||.+.=-.++.+++..++..-+.-.....+..++.-
T Consensus 98 ~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~ 147 (198)
T 1juo_A 98 LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKR 147 (198)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34455789999999999987789999999998876655555566655543
No 59
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=29.46 E-value=25 Score=24.71 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAK 209 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~K 209 (320)
.+.++++|.-||...=-.++-+++..++..-+.--+...
T Consensus 13 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 13 KDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp HHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 456899999999988778899999998887665444444
No 60
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=29.06 E-value=38 Score=25.05 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=43.1
Q ss_pred HhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhC--CHhhhhhhc
Q 020903 169 SRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFG--SFSKYCWNF 237 (320)
Q Consensus 169 kKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~G--SF~~ylWsF 237 (320)
...+.++++|..||.+.=-.++.+++..++..-+.--+...++.++..+ .. ...| +|.+|+--+
T Consensus 29 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~----D~-d~dg~i~~~eF~~~~ 94 (107)
T 2d58_A 29 SKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEV----SS-GSGETFSYPDFLRMM 94 (107)
T ss_dssp HHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH----CS-SSSSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh----CC-CCCCeEcHHHHHHHH
Confidence 3457799999999998888889999999988776655655555544321 00 1113 677777444
No 61
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=28.45 E-value=31 Score=26.75 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCc-ccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhc
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSL-LLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNF 237 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~I-IRNr~KI~AiI~NArailkv~~E~GSF~~ylWsF 237 (320)
...++++|..||...=-.++.+++..+|..-++ --+...|..++.+. ...-+|.+|+--+
T Consensus 24 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~-------dg~i~~~eF~~~~ 84 (166)
T 2mys_B 24 IEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-------SGPINFTVFLTMF 84 (166)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC-------CCCcCHHHHHHHH
Confidence 466899999999988778999999999887776 55666677776653 1122677776444
No 62
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=28.25 E-value=19 Score=26.48 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIV 214 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI 214 (320)
.+.++++|..||.+.=-.++.+++..++..-+.-.....|+.++
T Consensus 28 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 28 EEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45688999999988777789999998887666545555554443
No 63
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=27.35 E-value=17 Score=23.83 Aligned_cols=41 Identities=10% Similarity=0.248 Sum_probs=30.0
Q ss_pred HHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHH
Q 020903 173 IFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAI 213 (320)
Q Consensus 173 ~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~Ai 213 (320)
.++++|..||...=-.++-+++..++..-++--+...|..+
T Consensus 2 ~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 42 (67)
T 1tiz_A 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKF 42 (67)
T ss_dssp THHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 36788999998887778999999888766654555444443
No 64
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=27.30 E-value=53 Score=23.81 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=34.1
Q ss_pred hHHHHHHHhcCCChHHHhcCCHHHHHhhhcCC---CcccchhHHHHHH
Q 020903 170 RRDIFRKLFDNFDISSVSQFTEKKLLSLKVNG---SLLLSEAKLRAIV 214 (320)
Q Consensus 170 KRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~---~IIRNr~KI~AiI 214 (320)
..+.++++|.-||...=-.++-+++..++..- +.--....|..++
T Consensus 39 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~ 86 (108)
T 2pvb_A 39 SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFL 86 (108)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 36789999999999888889999999999876 4434455555444
No 65
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=27.13 E-value=17 Score=23.45 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=9.3
Q ss_pred HhcCCHHHHHhhhcC
Q 020903 186 VSQFTEKKLLSLKVN 200 (320)
Q Consensus 186 VA~~~e~dIe~Ll~d 200 (320)
|..|+|++|++|+.|
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 668899999998864
No 66
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=27.08 E-value=60 Score=23.80 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHh--cCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHH
Q 020903 174 FRKLF--DNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQ 219 (320)
Q Consensus 174 fR~AF--~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NAra 219 (320)
|.+.| .++|-..+..++++|+..|--.. +-+|.||...|..-+.
T Consensus 22 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 22 HRDRFEDHEIEGAHLPALTKEDFVELGVTR--VGHRENIERALRQLDG 67 (76)
T ss_dssp GHHHHHHTTCCGGGGGGCCHHHHHHTTCCC--HHHHHHHHHHHHTC--
T ss_pred HHHHHHHcCCCHHHHccCCHHHHHHcCCCC--hhHHHHHHHHHHHHHH
Confidence 55555 46777899999999997665331 3588999877766443
No 67
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=26.80 E-value=18 Score=27.19 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=43.6
Q ss_pred hHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhCCHhhhhhhc
Q 020903 170 RRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFGSFSKYCWNF 237 (320)
Q Consensus 170 KRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~GSF~~ylWsF 237 (320)
....++++|..||...=-.++-+++..+|..-++--+...|..++.. ....-+|.+|+--+
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-------~~g~i~~~eF~~~~ 65 (143)
T 3j04_B 5 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE-------APGPINFTMFLTMF 65 (143)
T ss_dssp HHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT-------SSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHHHHH
Confidence 34678999999999888889999999998877776666666666554 11112577766444
No 68
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=26.78 E-value=21 Score=29.74 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHhcCCcccchhhHH
Q 020903 257 TPKAELISKDLMQKGFRCVGPTVVY 281 (320)
Q Consensus 257 t~~S~~iSKdLKkrGFkFVGPttvY 281 (320)
.++++.+.+....+||.|+||++|.
T Consensus 83 ~el~~~l~~~a~~qgy~~~G~v~V~ 107 (132)
T 2lc0_A 83 TGFARDLADYIQEQGWQTYGDVVVR 107 (132)
T ss_dssp HHHHHHHHHHHHHHTCBCSSCCEEE
T ss_pred HHHHHHHHHHHHHCCCeecCCeEEE
Confidence 4677788888889999999999876
No 69
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=26.09 E-value=8.4 Score=24.85 Aligned_cols=17 Identities=41% Similarity=0.792 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHhcCC
Q 020903 165 PAILSRRDIFRKLFDNF 181 (320)
Q Consensus 165 ~tILkKRe~fR~AF~~F 181 (320)
..||.+|+.||..|.+|
T Consensus 7 r~iL~rrpSYrkIlndl 23 (28)
T 1kdx_B 7 REILSRRPSYRKILNDL 23 (28)
T ss_dssp HHHHTTSTHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhh
Confidence 46899999999999876
No 70
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=25.77 E-value=33 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=35.3
Q ss_pred HhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCC----CcccchhHHHHHHH
Q 020903 169 SRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNG----SLLLSEAKLRAIVE 215 (320)
Q Consensus 169 kKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~----~IIRNr~KI~AiI~ 215 (320)
.+...+++||.-|| +.=-.++-+++..++..- +.--+...++.++.
T Consensus 73 ~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~ 122 (174)
T 2i7a_A 73 KRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTL 122 (174)
T ss_dssp HHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHH
Confidence 34467899999999 887788999999988877 65556666666664
No 71
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=25.74 E-value=21 Score=28.62 Aligned_cols=44 Identities=23% Similarity=0.479 Sum_probs=31.2
Q ss_pred HhccCcHHHHHHhHHH-HHHHhcCCCh-HHHhcCCHHHHHhh-hcCCCccc
Q 020903 158 ALAELSWPAILSRRDI-FRKLFDNFDI-SSVSQFTEKKLLSL-KVNGSLLL 205 (320)
Q Consensus 158 fQAGLSW~tILkKRe~-fR~AF~~FDp-~kVA~~~e~dIe~L-l~d~~IIR 205 (320)
.+.|++|..++++|.. ||+. +. +++..++++++-++ +++|.+|+
T Consensus 51 ~~~g~~~~~l~n~~~~~~k~l----~l~~k~~~ls~~~~~~lm~~~p~Lik 97 (120)
T 3gkx_A 51 PLSGLPVKKFFNTSGVVYKEL----KLSSKLPTMTEEEQIALLATNGKLVK 97 (120)
T ss_dssp HHHTSCGGGGBCTTSHHHHHT----THHHHGGGSCHHHHHHHHTTCGGGBC
T ss_pred HHcCCCHHHeEeCCCchhhhc----CcchhcccCCHHHHHHHHHhChhheE
Confidence 4679999999999854 4443 33 45678898887555 56787776
No 72
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=25.68 E-value=49 Score=29.69 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCc----ccchhhHHHHHHHhcccc
Q 020903 261 ELISKDLMQKGFR----CVGPTVVYSFMQVSGIVN 291 (320)
Q Consensus 261 ~~iSKdLKkrGFk----FVGPttvYsFMQAvG~vN 291 (320)
..+.+.|+++|.+ ..|++++-+||++ |+|+
T Consensus 177 ~~~l~~L~~~g~~~vlvEGG~~l~~sfL~a-gLVD 210 (270)
T 2p4g_A 177 KIAFDALHARRLKKISIEGGPSVYRQALSL-GIVD 210 (270)
T ss_dssp HHHHHHHHTTTCCEEEEEECHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHCCCCEEEEecCHHHHHHHHHC-CCCe
Confidence 3555679999998 5699999999876 8885
No 73
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=25.06 E-value=45 Score=26.10 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=38.0
Q ss_pred HHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 167 ILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 167 ILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
++...+.++++|..||...=-.++.+++..++..-+.--....+..++..
T Consensus 67 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 116 (167)
T 1gjy_A 67 LWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKR 116 (167)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33445789999999999887789999999999877665566666655544
No 74
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=24.80 E-value=1.2e+02 Score=20.02 Aligned_cols=31 Identities=6% Similarity=0.079 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHhccCcHHHHHHhHHHHHHHh
Q 020903 146 DRKLFELLVFSQALAELSWPAILSRRDIFRKLF 178 (320)
Q Consensus 146 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fR~AF 178 (320)
|..|++.|-.-+-+.|+|...+++ +++++..
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ir--~ai~~~l 47 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVCR--LAIKEYL 47 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHH--HHHHHHH
Confidence 677889898888999999999884 4555543
No 75
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=24.78 E-value=71 Score=24.47 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhh--
Q 020903 150 FELLVFSQALAELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEF-- 227 (320)
Q Consensus 150 FE~L~LEgfQAGLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~-- 227 (320)
|..+++......|+...+ ..++++|..||...=-.++-+++..++..-+.--+...|..++. .....
T Consensus 9 ~~~~~~~~~~~~l~~~~~----~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~-------~~d~~~~ 77 (166)
T 2aao_A 9 FKKMALRVIAESLSEEEI----AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQ-------AADVDNS 77 (166)
T ss_dssp HHHHHHHHHHHHSCHHHH----HHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHH-------HHCTTCC
T ss_pred HHHHHHHHHHHhCCHHHH----HHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH-------HhCCCCC
Confidence 456677777778887654 55888888899888778999999998887655445545544332 22221
Q ss_pred C--CHhhhhhhccCCccccCCCCccCCCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhccccCccc
Q 020903 228 G--SFSKYCWNFVNHAPVRNGFRYARQVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSGIVNDHLL 295 (320)
Q Consensus 228 G--SF~~ylWsFv~~kpi~~~~~~~~~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG~vNDHl~ 295 (320)
| +|.+|+-.+...... ........+-+.+-+.|=-++...-...+|+..|+-.+.+.
T Consensus 78 g~i~~~ef~~~~~~~~~~-----------~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~ 136 (166)
T 2aao_A 78 GTIDYKEFIAATLHLNKI-----------EREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIE 136 (166)
T ss_dssp SSBCHHHHHHHHTTCHHH-----------HTTHHHHHHHHHHCTTCSSSBCHHHHHHHTCC--------C
T ss_pred CeEcHHHHHHHHHHHhhc-----------ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHH
Confidence 2 588887554321100 01122334444444444445555556666666665444333
No 76
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=24.44 E-value=16 Score=27.39 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=57.5
Q ss_pred HHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHHHHHHHhhC--CHhhhhhhccCCccccCCCCccC
Q 020903 174 FRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQMLKVQQEFG--SFSKYCWNFVNHAPVRNGFRYAR 251 (320)
Q Consensus 174 fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArailkv~~E~G--SF~~ylWsFv~~kpi~~~~~~~~ 251 (320)
++++|..||...=-.++-+++..++..-++--+...|..++.- ...| +|.+|+--+.....
T Consensus 7 l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~--------~~~g~i~~~eF~~~~~~~~~--------- 69 (145)
T 2bl0_B 7 IQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQ--------LNAKEFDLATFKTVYRKPIK--------- 69 (145)
T ss_dssp HHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCCCHHHHHHHHHH--------HTSSEECHHHHHHHHTSCCC---------
T ss_pred HHHHHHHhCCCCcCccCHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCeEcHHHHHHHHHHHhh---------
Confidence 8999999998887778889998888776666666666665542 3334 68888755532210
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcccchhhHHHHHHHhc
Q 020903 252 QVPVKTPKAELISKDLMQKGFRCVGPTVVYSFMQVSG 288 (320)
Q Consensus 252 ~vP~~t~~S~~iSKdLKkrGFkFVGPttvYsFMQAvG 288 (320)
..+........+-+.+=+.|=-++-..-...+|+..|
T Consensus 70 ~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~g 106 (145)
T 2bl0_B 70 TPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLG 106 (145)
T ss_dssp CGGGGHHHHHHHHHHHCSSSSSEEEHHHHHHHHHHSS
T ss_pred cCcccHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHcC
Confidence 0011112223333333334444555555666666666
No 77
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=24.41 E-value=30 Score=25.27 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=33.0
Q ss_pred HhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHH
Q 020903 169 SRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAI 213 (320)
Q Consensus 169 kKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~Ai 213 (320)
...+.++++|..||...=-.++.+++..+|..-+.--+...|+.+
T Consensus 21 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l 65 (105)
T 1wlz_A 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 65 (105)
T ss_dssp HTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345788999999999888788999998888765554444444443
No 78
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=24.00 E-value=34 Score=24.18 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIV 214 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI 214 (320)
.+.++++|..||...=-.++-+++..++..-++--+...|+.++
T Consensus 8 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 8 EEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45688999999988877789999999988776655555554433
No 79
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=23.85 E-value=30 Score=24.56 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIV 214 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI 214 (320)
...++++|..||...=-.++-+++..++..-++--+...|+.++
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 62 (90)
T 1avs_A 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 62 (90)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46788999999988777889999999887766655555555443
No 80
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.72 E-value=16 Score=26.94 Aligned_cols=34 Identities=6% Similarity=0.072 Sum_probs=27.1
Q ss_pred HhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCC
Q 020903 169 SRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGS 202 (320)
Q Consensus 169 kKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~ 202 (320)
..++.|+++|.-||.+.=-.++-+++..++..-+
T Consensus 6 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g 39 (92)
T 1fi6_A 6 EQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK 39 (92)
T ss_dssp HHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcC
Confidence 3467899999999998766788888888876544
No 81
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=23.53 E-value=18 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=30.5
Q ss_pred hHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHH
Q 020903 170 RRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLR 211 (320)
Q Consensus 170 KRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~ 211 (320)
..+.++++|..||...=-.++-+++..++..-++--+...|.
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~ 46 (77)
T 2joj_A 5 QKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEIL 46 (77)
T ss_dssp HHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHH
Confidence 356789999999988777788889988887655444444443
No 82
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=22.61 E-value=71 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=35.2
Q ss_pred HHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHH
Q 020903 167 ILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAI 213 (320)
Q Consensus 167 ILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~Ai 213 (320)
++...+.++++|..||...=-.++.+++..++..-+.-.+...+..+
T Consensus 88 ~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~ 134 (191)
T 1y1x_A 88 LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQAL 134 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34445788999999999988889999999999877654454444433
No 83
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=22.59 E-value=43 Score=26.51 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=30.0
Q ss_pred hccCcHHHHHHhHH-HHHHHhcCCChHHHhcCCHHHHH-hhhcCCCcccc
Q 020903 159 LAELSWPAILSRRD-IFRKLFDNFDISSVSQFTEKKLL-SLKVNGSLLLS 206 (320)
Q Consensus 159 QAGLSW~tILkKRe-~fR~AF~~FDp~kVA~~~e~dIe-~Ll~d~~IIRN 206 (320)
++|+.|..+++++. .|++.-.. ...++++++- .|+++|.+|+-
T Consensus 48 ~~~~~~~~l~n~~~~~~k~l~~~-----~~~ls~~~~~~~m~~~p~LikR 92 (120)
T 3l78_A 48 YTENGTEDIISTRSKVFQKLDID-----VDELSVSELINLISKNPSLLRR 92 (120)
T ss_dssp HCSSTHHHHBCTTCHHHHHTTCC-----GGGCCHHHHHHHHHHCGGGBCS
T ss_pred hcCCCHHHhhcCCcHHHHHcCCC-----cccCCHHHHHHHHHhCccceec
Confidence 57999999999884 56664432 2567887764 55568888763
No 84
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=22.57 E-value=50 Score=25.88 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=34.0
Q ss_pred HHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHH
Q 020903 168 LSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAI 213 (320)
Q Consensus 168 LkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~Ai 213 (320)
+...+.++++|..||...=-.++.+++..++..-+.--....+..+
T Consensus 70 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 115 (172)
T 2znd_A 70 WKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDIL 115 (172)
T ss_dssp HHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3445789999999999988889999999988766654444444433
No 85
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=22.05 E-value=26 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=31.4
Q ss_pred HhccCcHHHHHHhHHH-HHHHhcCCCh-HHHhcCCHHHHH-hhhcCCCccc
Q 020903 158 ALAELSWPAILSRRDI-FRKLFDNFDI-SSVSQFTEKKLL-SLKVNGSLLL 205 (320)
Q Consensus 158 fQAGLSW~tILkKRe~-fR~AF~~FDp-~kVA~~~e~dIe-~Ll~d~~IIR 205 (320)
.+.|+.|..++++|.. ||+. +. ++++.++++++- .|+++|.+|+
T Consensus 50 ~~~g~~~~~l~n~~~~~~k~l----~l~~~~~~ls~~~~~~lm~~~p~Lik 96 (120)
T 3fz4_A 50 ENSGLELKKFFNTSGQSYRAL----GLKDKLHQLSLDEAANLLASDGMLIK 96 (120)
T ss_dssp HHSCCCGGGGBCTTSHHHHHT----THHHHGGGCCHHHHHHHHHHCGGGBC
T ss_pred HHcCCCHHHHhCCCCcchhhc----CcccccccCCHHHHHHHHHhChheEe
Confidence 4689999999998854 4543 33 456788988765 4557888876
No 86
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=21.94 E-value=72 Score=23.64 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=31.9
Q ss_pred HHHHh--cCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHHHHHH
Q 020903 174 FRKLF--DNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVENAKQM 220 (320)
Q Consensus 174 fR~AF--~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~NArai 220 (320)
|.+.| .++|-..+..++++|+..|.-.. +-+|.||...|..-+..
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~ghr~kIl~aI~~L~~~ 73 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTK--VGHMKRILCGIKELSRS 73 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCC--HHHHHHHHHHHHHHHHH
Confidence 44555 45788889999999998854322 46899998887765443
No 87
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=21.87 E-value=69 Score=23.82 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAI 213 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~Ai 213 (320)
.+.++++|.-||...=-.++.+++..++..-+.--....+..+
T Consensus 84 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~ 126 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEEL 126 (149)
T ss_pred HHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4778999999999887788999999888766544444444433
No 88
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=21.38 E-value=63 Score=22.17 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCC-cccchhHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGS-LLLSEAKLRAI 213 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~-IIRNr~KI~Ai 213 (320)
.+.++ +|.-||...=-.++-+++..++..-+ .--+...|+.+
T Consensus 8 ~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 50 (81)
T 1c7v_A 8 EEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEA 50 (81)
T ss_dssp HHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHH
T ss_pred HHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 46688 99999998888899999999998776 54455444443
No 89
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=21.22 E-value=23 Score=29.47 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=30.7
Q ss_pred cCcHHHHHHhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCC
Q 020903 161 ELSWPAILSRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGS 202 (320)
Q Consensus 161 GLSW~tILkKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~ 202 (320)
-..|.+ -..++.|+++|.-|| ..=-.++-+++..+|...+
T Consensus 41 ~~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l~~~g 80 (139)
T 2jq6_A 41 DVEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSK 80 (139)
T ss_dssp CCCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHHHHTT
T ss_pred CCCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHHHHhC
Confidence 356764 467788999999999 6655678888888887655
No 90
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=21.21 E-value=82 Score=23.72 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVEN 216 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~N 216 (320)
.+.++++|.-||...=-.++.+++..++..-+.-.....+..++.-
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 128 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNA 128 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5779999999999887778999999998877766666667666654
No 91
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=21.11 E-value=66 Score=24.49 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIV 214 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI 214 (320)
.+.++++|..||...=-.++-+++..++..-+.--....+..++
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~ 126 (156)
T 1wdc_C 83 FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEII 126 (156)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46789999999998877889999999988766555555555444
No 92
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.91 E-value=17 Score=27.00 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=28.8
Q ss_pred HhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCc
Q 020903 169 SRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSL 203 (320)
Q Consensus 169 kKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~I 203 (320)
..++.|+++|.-||.+.=-.++-+++..+|..-++
T Consensus 7 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~ 41 (95)
T 1c07_A 7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGL 41 (95)
T ss_dssp HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCC
Confidence 34678999999999988777899999998877653
No 93
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=20.85 E-value=74 Score=25.37 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHHH
Q 020903 171 RDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIVE 215 (320)
Q Consensus 171 Re~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI~ 215 (320)
.+.+++||.-||.+.=-.++-+++.++|..-+.--+..-|..++.
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~~ 128 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK 128 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 467899999999998888999999999987776555555555443
No 94
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=20.77 E-value=71 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCc----ccchhhHHHHHHHhcccc
Q 020903 261 ELISKDLMQKGFR----CVGPTVVYSFMQVSGIVN 291 (320)
Q Consensus 261 ~~iSKdLKkrGFk----FVGPttvYsFMQAvG~vN 291 (320)
..+.+.|+++|.+ ..|++++-+||++ |+|+
T Consensus 132 ~~~l~~L~~~g~~~ilveGG~~l~~s~l~~-gLvD 165 (219)
T 2azn_A 132 KKLMDILYDKGIKSILLEGGGTLNWGMFKE-GLVD 165 (219)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHT-TCCC
T ss_pred HHHHHHHHHcCCCEEEEeeCHHHHHHHHHC-CCCc
Confidence 4566779999988 3599999999875 8885
No 95
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=20.34 E-value=66 Score=25.42 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=35.4
Q ss_pred HhHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCcccchhHHHHHH
Q 020903 169 SRRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSLLLSEAKLRAIV 214 (320)
Q Consensus 169 kKRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~IIRNr~KI~AiI 214 (320)
...+.++++|.-||...=-.++-+++..+|..-+.--....|+.++
T Consensus 45 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~ 90 (147)
T 1wy9_A 45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLI 90 (147)
T ss_dssp HHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4567799999999998877889999999888766555555555444
No 96
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.24 E-value=34 Score=25.90 Aligned_cols=34 Identities=6% Similarity=0.206 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCCChHHHhcCCHHHHHhhhcCCCc
Q 020903 170 RRDIFRKLFDNFDISSVSQFTEKKLLSLKVNGSL 203 (320)
Q Consensus 170 KRe~fR~AF~~FDp~kVA~~~e~dIe~Ll~d~~I 203 (320)
..+.|+++|.-||.+.=-.++-+++..+|...++
T Consensus 9 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l 42 (99)
T 1qjt_A 9 GNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGL 42 (99)
T ss_dssp TCTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSS
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCC
Confidence 4567999999999998777888999998887663
Done!