Query 020904
Match_columns 320
No_of_seqs 211 out of 591
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 3.9E-39 1.3E-43 283.6 16.9 129 129-258 19-153 (164)
2 1e52_A Excinuclease ABC subuni 93.9 0.026 8.7E-07 42.2 2.2 26 292-317 25-51 (63)
3 2d7d_A Uvrabc system protein B 68.5 2.4 8.1E-05 43.5 2.7 25 293-317 628-653 (661)
4 1c4o_A DNA nucleotide excision 56.9 2.3 7.7E-05 43.7 0.0 26 292-317 612-638 (664)
5 2fzt_A Hypothetical protein TM 45.1 12 0.00039 29.0 2.3 20 292-311 3-23 (79)
6 2e5i_A Heterogeneous nuclear r 22.4 1.1E+02 0.0037 24.6 4.7 38 176-216 34-71 (124)
7 3zzy_A Polypyrimidine tract-bi 20.8 1.6E+02 0.0055 24.0 5.5 39 176-216 37-75 (130)
8 4aj5_A SKA1, spindle and kinet 17.0 35 0.0012 27.1 0.5 18 300-317 73-90 (91)
9 3tj8_A Urease accessory protei 13.9 2.6E+02 0.0091 23.9 5.4 46 154-200 81-138 (170)
10 3jtp_A Adapter protein MECA 1; 13.9 2.1E+02 0.0071 22.0 4.3 56 197-261 31-86 (98)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=3.9e-39 Score=283.56 Aligned_cols=129 Identities=24% Similarity=0.372 Sum_probs=119.8
Q ss_pred CcccCCCCCCCcEEEEEecCCCceEEEEEecchhHHHHHHHHccCCCCCCChHHHHHHHHHHhCCeEeEEEEEeEECCEE
Q 020904 129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY 208 (320)
Q Consensus 129 q~gaLd~~a~~PvLVL~e~dg~~r~LPI~I~eaeAiaI~~al~~~~~~RPlThDLl~evl~~lg~~v~~V~I~~l~dGvF 208 (320)
+++++|.++++|+|||++++++ |+|||||+..||.+|+.++++.+++||+|||||.++++++|.++.+|+|++++||+|
T Consensus 19 ~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtf 97 (164)
T 1vjl_A 19 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF 97 (164)
T ss_dssp EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEE
Confidence 4899999999999999999887 699999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEe------ecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCccc
Q 020904 209 FAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258 (320)
Q Consensus 209 yA~L~l~------~~g~~~~~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~v 258 (320)
||+|+++ +++++.+.+++|+|||||||||+|+++||||+|+|++++|+++
T Consensus 98 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~ 153 (164)
T 1vjl_A 98 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIEL 153 (164)
T ss_dssp EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEEC
T ss_pred EEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCC
Confidence 9999999 6553335789999999999999999999999999999999987
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=93.92 E-value=0.026 Score=42.22 Aligned_cols=26 Identities=4% Similarity=0.259 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHh-hccHHHHHhcccc
Q 020904 292 EFNLVRNMLIAAV-EERYRDAEKASEF 317 (320)
Q Consensus 292 e~e~Lr~mL~~Ai-eEdYE~AA~LRd~ 317 (320)
.++.|++.|.+|. +++||.||+|||-
T Consensus 25 ~i~~Le~~M~~AA~~leFE~AA~lRD~ 51 (63)
T 1e52_A 25 KIHELEGLMMQHAQNLEFEEAAQIRDQ 51 (63)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4677887777777 9999999999984
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=68.49 E-value=2.4 Score=43.51 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHh-hccHHHHHhcccc
Q 020904 293 FNLVRNMLIAAV-EERYRDAEKASEF 317 (320)
Q Consensus 293 ~e~Lr~mL~~Ai-eEdYE~AA~LRd~ 317 (320)
++.|++.|.+|. +++||.||+|||-
T Consensus 628 i~~l~~~m~~aa~~~~fe~Aa~~Rd~ 653 (661)
T 2d7d_A 628 VEQMEHEMKEAAKALDFERAAELRDL 653 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455666666566 9999999999985
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=56.86 E-value=2.3 Score=43.68 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHh-hccHHHHHhcccc
Q 020904 292 EFNLVRNMLIAAV-EERYRDAEKASEF 317 (320)
Q Consensus 292 e~e~Lr~mL~~Ai-eEdYE~AA~LRd~ 317 (320)
.++.|++.|.+|. +++||.||+|||-
T Consensus 612 ~i~~l~~~m~~aa~~l~fe~Aa~lRd~ 638 (664)
T 1c4o_A 612 RIAELELAMWQAAEALDFERAARLRDE 638 (664)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566777777777 9999999999985
No 5
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=45.09 E-value=12 Score=28.96 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHh-hccHHHH
Q 020904 292 EFNLVRNMLIAAV-EERYRDA 311 (320)
Q Consensus 292 e~e~Lr~mL~~Ai-eEdYE~A 311 (320)
++.+++++.+.|| +||||.-
T Consensus 3 ~I~EIEk~ID~aIE~edyE~L 23 (79)
T 2fzt_A 3 NIDEIERKIDEAIEKEDYETL 23 (79)
T ss_dssp CHHHHHHHHHHHHHHTCHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHH
Confidence 4677889999999 9999964
No 6
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.37 E-value=1.1e+02 Score=24.59 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHHhCCeEeEEEEEeEECCEEEEEEEEee
Q 020904 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (320)
Q Consensus 176 ~RPlThDLl~evl~~lg~~v~~V~I~~l~dGvFyA~L~l~~ 216 (320)
+.+.|.+.|.+++..+|. |.+|.|.. +.| |+|-+.+.+
T Consensus 34 ~~~vt~~~L~~~Fs~yG~-V~~v~i~~-~~G-f~aFVef~~ 71 (124)
T 2e5i_A 34 LYPITVDVLYTVCNPVGK-VQRIVIFK-RNG-IQAMVEFES 71 (124)
T ss_dssp CSCCCHHHHHHHHTTTSC-EEEEEEEE-SSS-EEEEEEESS
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEEe-CCC-CEEEEEECC
Confidence 457888999999999986 88888865 344 678777754
No 7
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=20.79 E-value=1.6e+02 Score=23.98 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCCChHHHHHHHHHHhCCeEeEEEEEeEECCEEEEEEEEee
Q 020904 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (320)
Q Consensus 176 ~RPlThDLl~evl~~lg~~v~~V~I~~l~dGvFyA~L~l~~ 216 (320)
+.+.|.|.|.+++..+|. |.+|.|.. +..-|+|-+.+.+
T Consensus 37 ~~~vte~~L~~lFs~yG~-V~~V~i~~-~~~gfqAFVef~~ 75 (130)
T 3zzy_A 37 FYPVTLDVLHQIFSKFGT-VLKIITFT-KNNQFQALLQYAD 75 (130)
T ss_dssp CSCCCHHHHHHHHTTSSC-EEEEEEEE-ETTEEEEEEEESC
T ss_pred CCCCCHHHHHHHHhCcCC-EEEEEEEc-CCCCcEEEEEECC
Confidence 468999999999999986 88888865 4456778887764
No 8
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=17.00 E-value=35 Score=27.09 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=7.0
Q ss_pred HHHHhhccHHHHHhcccc
Q 020904 300 LIAAVEERYRDAEKASEF 317 (320)
Q Consensus 300 L~~AieEdYE~AA~LRd~ 317 (320)
|.++.+|||+++.+|+||
T Consensus 73 L~~s~e~d~kdv~HLken 90 (91)
T 4aj5_A 73 LCESLEEDYKDIEHLKEN 90 (91)
T ss_dssp HHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 456679999999999987
No 9
>3tj8_A Urease accessory protein UREE; metal binding protein; 1.59A {Helicobacter pylori} PDB: 3tj9_A 3tja_A 3l9z_A 3la0_A 3nxz_A 3ny0_A
Probab=13.91 E-value=2.6e+02 Score=23.87 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=29.6
Q ss_pred EEEEe-cchhHHHHHHHHccCCCC-----C------CChHHHHHHHHHHhCCeEeEEEE
Q 020904 154 LPIIV-LEMPSVLLMAAMRNVQIA-----R------PTLYQVVKEMIEKMGYEVRLVRV 200 (320)
Q Consensus 154 LPI~I-~eaeAiaI~~al~~~~~~-----R------PlThDLl~evl~~lg~~v~~V~I 200 (320)
+-|.. ...+...++..++|+.-| - |.-| .+.++|+.+|..+.++.-
T Consensus 81 l~i~~~~~~~l~r~ayhLGNRH~p~~i~~~~~~l~i~~D~-vl~~mL~~lG~~v~~~~~ 138 (170)
T 3tj8_A 81 IHIQAKSVAEVAKICYEIGNRHAALYYGESQFEFKTPFEK-PTLALLEKLGVQNRVLSS 138 (170)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCCEEECSSTTEEEEECCH-HHHHHHHHHTCEEEEEEE
T ss_pred EEEeCCCHHHHHHHHHHHcCCcceEEECCCceEEEEcCcH-HHHHHHHHCCCeeEEEEe
Confidence 43433 344566777888875432 1 2233 678999999998887764
No 10
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=13.89 E-value=2.1e+02 Score=22.00 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=43.1
Q ss_pred EEEEEeEECCEEEEEEEEeecCccceEEEEeCChHHHHHHHHHcCCCEEEehhHHhhcCcccccc
Q 020904 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (320)
Q Consensus 197 ~V~I~~l~dGvFyA~L~l~~~g~~~~~~~IDaRPSDAIALAlR~~~PIyV~e~Vl~~agi~vve~ 261 (320)
.=..+.. +|.||=.|.+... -+....+.++++..++-|-.+++..+.+-|-.++..
T Consensus 31 ~s~LYk~-~~~YYL~l~~~~~--------~~~~~~~~~a~l~EYg~~s~~t~~~L~EhGk~Ii~~ 86 (98)
T 3jtp_A 31 KTTLYSF-ENRYYLYVDFCDM--------TDEEVENQLSIMLEYANESSISIHRLEEYGKLIISE 86 (98)
T ss_dssp EEEEEEE-TTEEEEEEECCSC--------CTTHHHHHHHHHHHHCEECCCCHHHHHHHSEEEECS
T ss_pred CceeEEE-CCEEEEEEEeCCC--------CHHHHHHHHHHHHHhCCCCcccHHHHHhhChhhchh
Confidence 3344443 9999988877532 245678999999999999999999999999887543
Done!