Your job contains 1 sequence.
>020905
MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL
SYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEE
KVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYAS
IDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDE
VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNG
KAKKLEPLEVETASSSSQNN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020905
(320 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2184017 - symbol:AT5G24490 "AT5G24490" species... 932 1.3e-93 1
UNIPROTKB|Q9RVE7 - symbol:DR_1082 "Uncharacterized protei... 251 1.9e-21 1
UNIPROTKB|Q71WR7 - symbol:yfiA "Ribosomal subunit interfa... 220 3.6e-18 1
UNIPROTKB|Q81X25 - symbol:yfiA "Ribosomal subunit interfa... 197 9.8e-16 1
TIGR_CMR|BA_5422 - symbol:BA_5422 "ribosomal subunit inte... 197 9.8e-16 1
UNIPROTKB|Q3AFQ6 - symbol:yfiA "Ribosomal subunit interfa... 190 6.5e-15 1
TIGR_CMR|CHY_0156 - symbol:CHY_0156 "ribosomal subunit in... 190 6.5e-15 1
UNIPROTKB|Q74BZ2 - symbol:raiA "Ribosomal subunit interfa... 185 2.6e-14 1
TIGR_CMR|GSU_1886 - symbol:GSU_1886 "ribosomal subunit in... 185 2.6e-14 1
UNIPROTKB|Q5LWN3 - symbol:SPO0078 "Ribosomal subunit inte... 173 6.5e-13 1
TIGR_CMR|SPO_0078 - symbol:SPO_0078 "ribosomal subunit in... 173 6.5e-13 1
UNIPROTKB|Q0BX30 - symbol:HNE_3290 "Putative uncharacteri... 144 2.5e-09 1
UNIPROTKB|Q2GGH0 - symbol:ECH_0654 "Putative ribosomal su... 126 3.2e-06 1
TIGR_CMR|ECH_0654 - symbol:ECH_0654 "putative ribosomal s... 126 3.2e-06 1
UNIPROTKB|O30652 - symbol:O30652 "Putative sigma54 modula... 108 1.2e-05 1
TIGR_CMR|VC_2530 - symbol:VC_2530 "sigma-54 modulation pr... 108 1.2e-05 1
UNIPROTKB|Q60AV4 - symbol:yfiA "Ribosomal subunit interfa... 103 4.3e-05 1
UNIPROTKB|Q8EAE4 - symbol:yhbH "Sigma-54 modulation prote... 96 0.00025 1
UNIPROTKB|Q9KU23 - symbol:VC_0706 "Sigma-54 modulation pr... 96 0.00025 1
TIGR_CMR|SO_3962 - symbol:SO_3962 "ribosomal subunit inte... 96 0.00025 1
TIGR_CMR|VC_0706 - symbol:VC_0706 "sigma-54 modulation pr... 96 0.00025 1
>TAIR|locus:2184017 [details] [associations]
symbol:AT5G24490 "AT5G24490" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005840 "ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0044238 "primary metabolic process"
evidence=IEA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] InterPro:IPR003489
Pfam:PF02482 EMBL:CP002688 GO:GO:0009570 GO:GO:0005840
GO:GO:0009534 eggNOG:COG1544 GO:GO:0044238 Gene3D:3.30.160.100
SUPFAM:SSF69754 TIGRFAMs:TIGR00741 UniGene:At.49057
UniGene:At.71123 EMBL:AF370148 EMBL:BT006057 IPI:IPI00541396
RefSeq:NP_568447.1 ProteinModelPortal:Q94K97 SMR:Q94K97
STRING:Q94K97 PaxDb:Q94K97 PRIDE:Q94K97 EnsemblPlants:AT5G24490.1
GeneID:832520 KEGG:ath:AT5G24490 OMA:NVEVPEH
ProtClustDB:CLSN2689858 ArrayExpress:Q94K97 Genevestigator:Q94K97
Uniprot:Q94K97
Length = 308
Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
Identities = 186/238 (78%), Positives = 208/238 (87%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 69 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 128
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 129 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 188
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAI 259
MKGFNRLKVREPV + VVE+ D+ V EEE+D+ + E IVR K FEMPPLTV+EA+
Sbjct: 189 MKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKE-IVRTKTFEMPPLTVAEAV 247
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
EQLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 248 EQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 305
>UNIPROTKB|Q9RVE7 [details] [associations]
symbol:DR_1082 "Uncharacterized protein DR_1082"
species:243230 "Deinococcus radiodurans R1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:AE000513
GenomeReviews:AE000513_GR eggNOG:COG1544 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741 PIR:D75440
RefSeq:NP_294806.1 ProteinModelPortal:Q9RVE7 GeneID:1797484
KEGG:dra:DR_1082 PATRIC:21629750 HOGENOM:HOG000074927 OMA:DMYNAID
ProtClustDB:CLSK444871 BioCyc:DRAD243230:GH46-1452-MONOMER
Uniprot:Q9RVE7
Length = 191
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 66/196 (33%), Positives = 113/196 (57%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+T+ ++ +VEEK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR-EPVTQV 221
G++RAEE +YA+ID S +++R+LRK K R+MK R + R EP+
Sbjct: 62 VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLPGP 113
Query: 222 VENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E + + Q + V E IVR K FE+ P++ +A+ Q+E + HDFY F++ + G
Sbjct: 114 AEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-G 172
Query: 279 EINIVYKRKAGGYGVI 294
+ +VY+R+ G YG+I
Sbjct: 173 QTGVVYRRRDGHYGLI 188
>UNIPROTKB|Q71WR7 [details] [associations]
symbol:yfiA "Ribosomal subunit interface protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003489 Pfam:PF02482
EMBL:AE017262 GenomeReviews:AE017262_GR eggNOG:COG1544
GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 HOGENOM:HOG000074927 OMA:EEAVMQM
RefSeq:YP_015072.1 ProteinModelPortal:Q71WR7 STRING:Q71WR7
GeneID:2797111 KEGG:lmf:LMOf2365_2484 PATRIC:20326337
ProtClustDB:CLSK564977 Uniprot:Q71WR7
Length = 187
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 63/196 (32%), Positives = 103/196 (52%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER-----DY 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + EE + +F D IVR K F + P+ EA+ Q+ + H FY + + ET
Sbjct: 110 FAYSDVNGSTPPEENEGDF-DLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETN 168
Query: 279 EINIVYKRKAGGYGVI 294
NIVY RK G YG+I
Sbjct: 169 GTNIVYSRKDGKYGLI 184
>UNIPROTKB|Q81X25 [details] [associations]
symbol:yfiA "Ribosomal subunit interface protein"
species:1392 "Bacillus anthracis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR KO:K05808 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
HOGENOM:HOG000074927 RefSeq:NP_847591.1 RefSeq:YP_022085.1
RefSeq:YP_031278.1 HSSP:P71346 ProteinModelPortal:Q81X25
DNASU:1085018 EnsemblBacteria:EBBACT00000012766
EnsemblBacteria:EBBACT00000015604 EnsemblBacteria:EBBACT00000020135
GeneID:1085018 GeneID:2818651 GeneID:2851946 KEGG:ban:BA_5422
KEGG:bar:GBAA_5422 KEGG:bat:BAS5039 OMA:QSITNEV
ProtClustDB:CLSK904720 BioCyc:BANT260799:GJAJ-5114-MONOMER
BioCyc:BANT261594:GJ7F-5290-MONOMER Uniprot:Q81X25
Length = 180
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 54/145 (37%), Positives = 87/145 (60%)
Query: 154 RRCEVTL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
+R EVT+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSM 102
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
K + + V A + + EED+ ++ +VR K F++ P+ V EAI Q++ + H+F+ F
Sbjct: 103 KTNFILPEAV---AVLDAVEEDE--LE--LVRTKRFDLKPMDVEEAILQMDMLGHNFFVF 155
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
N +T E N+VY RK G YG+I K
Sbjct: 156 TNADTNETNVVYGRKDGKYGLIETK 180
Score = 125 (49.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 43/138 (31%), Positives = 76/138 (55%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDD 235
+ + V A + + EED+
Sbjct: 108 LPEAV---AVLDAVEEDE 122
>TIGR_CMR|BA_5422 [details] [associations]
symbol:BA_5422 "ribosomal subunit interface protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005840 "ribosome"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR KO:K05808 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
HOGENOM:HOG000074927 RefSeq:NP_847591.1 RefSeq:YP_022085.1
RefSeq:YP_031278.1 HSSP:P71346 ProteinModelPortal:Q81X25
DNASU:1085018 EnsemblBacteria:EBBACT00000012766
EnsemblBacteria:EBBACT00000015604 EnsemblBacteria:EBBACT00000020135
GeneID:1085018 GeneID:2818651 GeneID:2851946 KEGG:ban:BA_5422
KEGG:bar:GBAA_5422 KEGG:bat:BAS5039 OMA:QSITNEV
ProtClustDB:CLSK904720 BioCyc:BANT260799:GJAJ-5114-MONOMER
BioCyc:BANT261594:GJ7F-5290-MONOMER Uniprot:Q81X25
Length = 180
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 54/145 (37%), Positives = 87/145 (60%)
Query: 154 RRCEVTL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
+R EVT+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +
Sbjct: 48 QRVEVTIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSM 102
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
K + + V A + + EED+ ++ +VR K F++ P+ V EAI Q++ + H+F+ F
Sbjct: 103 KTNFILPEAV---AVLDAVEEDE--LE--LVRTKRFDLKPMDVEEAILQMDMLGHNFFVF 155
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
N +T E N+VY RK G YG+I K
Sbjct: 156 TNADTNETNVVYGRKDGKYGLIETK 180
Score = 125 (49.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 43/138 (31%), Positives = 76/138 (55%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFTDL--LLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDD 235
+ + V A + + EED+
Sbjct: 108 LPEAV---AVLDAVEEDE 122
>UNIPROTKB|Q3AFQ6 [details] [associations]
symbol:yfiA "Ribosomal subunit interface protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003489
Pfam:PF02482 EMBL:CP000141 GenomeReviews:CP000141_GR eggNOG:COG1544
KO:K05808 GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 HOGENOM:HOG000074927 RefSeq:YP_359028.1
ProteinModelPortal:Q3AFQ6 STRING:Q3AFQ6 GeneID:3727754
KEGG:chy:CHY_0156 PATRIC:21273499 OMA:EEAVMQM
BioCyc:CHYD246194:GJCN-156-MONOMER Uniprot:Q3AFQ6
Length = 177
Score = 190 (71.9 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 48/145 (33%), Positives = 81/145 (55%)
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
+ + EVT+ + ++R EE++ +Y+SIDLV ++R+ +K KEK + R
Sbjct: 47 LHKTEVTIPVAGY-LLRGEEESPDMYSSIDLVVDKLERQAKKYKEKL---------YARF 96
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
K + + + ++ E DN + IV+ K F + P++ EA Q+E + H F+ F
Sbjct: 97 KNNK---NIATGEKSAETTPEPDNEIK--IVKSKRFAIKPMSPEEAAMQMELLGHSFFVF 151
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
N +T EIN+VYKR+ G YG+I P+
Sbjct: 152 TNADTDEINVVYKRRDGKYGLIEPE 176
Score = 119 (46.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/96 (32%), Positives = 57/96 (59%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +K + E+++ K + K+ + V V L V G + + EVT+
Sbjct: 5 VRGKNIEVTPALKEYAEKRLAK-LEKYLPKIDVVHVTLLVEGD-------LHKTEVTIPV 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK 198
+ ++R EE++ +Y+SIDLV ++R+ +K KEK
Sbjct: 57 AGY-LLRGEEESPDMYSSIDLVVDKLERQAKKYKEK 91
>TIGR_CMR|CHY_0156 [details] [associations]
symbol:CHY_0156 "ribosomal subunit interface protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005840
"ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR003489 Pfam:PF02482 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG1544 KO:K05808 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
HOGENOM:HOG000074927 RefSeq:YP_359028.1 ProteinModelPortal:Q3AFQ6
STRING:Q3AFQ6 GeneID:3727754 KEGG:chy:CHY_0156 PATRIC:21273499
OMA:EEAVMQM BioCyc:CHYD246194:GJCN-156-MONOMER Uniprot:Q3AFQ6
Length = 177
Score = 190 (71.9 bits), Expect = 6.5e-15, P = 6.5e-15
Identities = 48/145 (33%), Positives = 81/145 (55%)
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
+ + EVT+ + ++R EE++ +Y+SIDLV ++R+ +K KEK + R
Sbjct: 47 LHKTEVTIPVAGY-LLRGEEESPDMYSSIDLVVDKLERQAKKYKEKL---------YARF 96
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
K + + + ++ E DN + IV+ K F + P++ EA Q+E + H F+ F
Sbjct: 97 KNNK---NIATGEKSAETTPEPDNEIK--IVKSKRFAIKPMSPEEAAMQMELLGHSFFVF 151
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
N +T EIN+VYKR+ G YG+I P+
Sbjct: 152 TNADTDEINVVYKRRDGKYGLIEPE 176
Score = 119 (46.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 31/96 (32%), Positives = 57/96 (59%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +K + E+++ K + K+ + V V L V G + + EVT+
Sbjct: 5 VRGKNIEVTPALKEYAEKRLAK-LEKYLPKIDVVHVTLLVEGD-------LHKTEVTIPV 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK 198
+ ++R EE++ +Y+SIDLV ++R+ +K KEK
Sbjct: 57 AGY-LLRGEEESPDMYSSIDLVVDKLERQAKKYKEK 91
>UNIPROTKB|Q74BZ2 [details] [associations]
symbol:raiA "Ribosomal subunit interface-associated
sigma-54 modulation protein RaiA" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003489
Pfam:PF02482 EMBL:AE017180 GenomeReviews:AE017180_GR KO:K05808
GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 HOGENOM:HOG000074927 OMA:EEAVMQM
RefSeq:NP_952935.1 ProteinModelPortal:Q74BZ2 DNASU:2688507
GeneID:2688507 KEGG:gsu:GSU1886 PATRIC:22026637
ProtClustDB:CLSK828620 BioCyc:GSUL243231:GH27-1905-MONOMER
Uniprot:Q74BZ2
Length = 181
Score = 185 (70.2 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 54/193 (27%), Positives = 101/193 (52%)
Query: 108 LELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CEVTLFTKK 164
+++T T ++ + + K A K + + +D ++ + F +IR EVTL T K
Sbjct: 1 MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQ--VFLTVEKIRHIAEVTL-TAK 57
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++A E+ +YA++D V I+R+LR+ KE+ +H + L++++ V
Sbjct: 58 GITIKAAEETNDMYAALDAVIDKIERQLRRYKERLKEH-KPSADDRALEIQKSVV----- 111
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
+ E + + V++R K + P++V EA+ Q++ + DF F + T IN+VY
Sbjct: 112 -----TAESIEQRTEPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTEAINVVY 166
Query: 285 KRKAGGYGVIIPK 297
+RK G YG+I P+
Sbjct: 167 RRKDGNYGLIEPQ 179
>TIGR_CMR|GSU_1886 [details] [associations]
symbol:GSU_1886 "ribosomal subunit interface protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0005840 "ribosome"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:AE017180
GenomeReviews:AE017180_GR KO:K05808 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
HOGENOM:HOG000074927 OMA:EEAVMQM RefSeq:NP_952935.1
ProteinModelPortal:Q74BZ2 DNASU:2688507 GeneID:2688507
KEGG:gsu:GSU1886 PATRIC:22026637 ProtClustDB:CLSK828620
BioCyc:GSUL243231:GH27-1905-MONOMER Uniprot:Q74BZ2
Length = 181
Score = 185 (70.2 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 54/193 (27%), Positives = 101/193 (52%)
Query: 108 LELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CEVTLFTKK 164
+++T T ++ + + K A K + + +D ++ + F +IR EVTL T K
Sbjct: 1 MQITTTFRHMEQSEALKSYAAEKLERVKKYIDEPITAQ--VFLTVEKIRHIAEVTL-TAK 57
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++A E+ +YA++D V I+R+LR+ KE+ +H + L++++ V
Sbjct: 58 GITIKAAEETNDMYAALDAVIDKIERQLRRYKERLKEH-KPSADDRALEIQKSVV----- 111
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
+ E + + V++R K + P++V EA+ Q++ + DF F + T IN+VY
Sbjct: 112 -----TAESIEQRTEPVVIRSKTISIKPMSVEEAVMQMDLLHKDFLVFTDASTEAINVVY 166
Query: 285 KRKAGGYGVIIPK 297
+RK G YG+I P+
Sbjct: 167 RRKDGNYGLIEPQ 179
>UNIPROTKB|Q5LWN3 [details] [associations]
symbol:SPO0078 "Ribosomal subunit interface protein,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003489 Pfam:PF02482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0044238 Gene3D:3.30.160.100
SUPFAM:SSF69754 TIGRFAMs:TIGR00741 HOGENOM:HOG000074926 OMA:GKHMEIG
RefSeq:YP_165352.1 ProteinModelPortal:Q5LWN3 GeneID:3194769
KEGG:sil:SPO0078 PATRIC:23373393 ProtClustDB:CLSK933145
Uniprot:Q5LWN3
Length = 187
Score = 173 (66.0 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 50/195 (25%), Positives = 95/195 (48%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK +++ +++HV+ ++G+ V K++ R D + F + CE T+
Sbjct: 5 ISGKQIDIGAALQSHVQTELGEVVSKYAQ--RPTDAHVV-----FSRSAHEYVCEATVHL 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+A+ A +YA+ D + ++LR+ K + DH H +++ + ++
Sbjct: 58 STGLTAQAKAHATEIYAAFDGCCEKMDKQLRRYKRRLKDH--HKDRAEPVELFGASSYIL 115
Query: 223 ENDA-DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
++ D QSE D+ ++ M+ ++P L+V EA+ Q+E FRNE +N
Sbjct: 116 ASEEPDAQSEP--DSLQPMIVAEMET-KIPSLSVGEAVMQMELAGAPVLVFRNESKDGLN 172
Query: 282 IVYKRKAGGYGVIIP 296
+VY+R+ G G I P
Sbjct: 173 VVYRREDGNIGWIDP 187
>TIGR_CMR|SPO_0078 [details] [associations]
symbol:SPO_0078 "ribosomal subunit interface protein,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005840 "ribosome"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0044238 Gene3D:3.30.160.100
SUPFAM:SSF69754 TIGRFAMs:TIGR00741 HOGENOM:HOG000074926 OMA:GKHMEIG
RefSeq:YP_165352.1 ProteinModelPortal:Q5LWN3 GeneID:3194769
KEGG:sil:SPO0078 PATRIC:23373393 ProtClustDB:CLSK933145
Uniprot:Q5LWN3
Length = 187
Score = 173 (66.0 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 50/195 (25%), Positives = 95/195 (48%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK +++ +++HV+ ++G+ V K++ R D + F + CE T+
Sbjct: 5 ISGKQIDIGAALQSHVQTELGEVVSKYAQ--RPTDAHVV-----FSRSAHEYVCEATVHL 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+A+ A +YA+ D + ++LR+ K + DH H +++ + ++
Sbjct: 58 STGLTAQAKAHATEIYAAFDGCCEKMDKQLRRYKRRLKDH--HKDRAEPVELFGASSYIL 115
Query: 223 ENDA-DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
++ D QSE D+ ++ M+ ++P L+V EA+ Q+E FRNE +N
Sbjct: 116 ASEEPDAQSEP--DSLQPMIVAEMET-KIPSLSVGEAVMQMELAGAPVLVFRNESKDGLN 172
Query: 282 IVYKRKAGGYGVIIP 296
+VY+R+ G G I P
Sbjct: 173 VVYRREDGNIGWIDP 187
>UNIPROTKB|Q0BX30 [details] [associations]
symbol:HNE_3290 "Putative uncharacterized protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:CP000158
GenomeReviews:CP000158_GR eggNOG:COG1544 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
RefSeq:YP_761963.1 ProteinModelPortal:Q0BX30 STRING:Q0BX30
GeneID:4290452 KEGG:hne:HNE_3290 PATRIC:32219461
HOGENOM:HOG000074926 OMA:GKHMEIG ProtClustDB:CLSK777536
BioCyc:HNEP228405:GI69-3292-MONOMER Uniprot:Q0BX30
Length = 198
Score = 144 (55.7 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 51/204 (25%), Positives = 100/204 (49%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR-RCE 157
+++ I G+++EL + ++ +EE + AV K+ + +V +S +G P + C
Sbjct: 1 MQIQITGRHMELGEALRGRIEEGLEAAVSKYFSRTGDANVFVSQQG------PFVEVDCN 54
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
V L G+V ++ A YA++++ +++++R+ K + DH H G L E
Sbjct: 55 VHL---PSGIVLQSSGKANDPYAALEVSLEKMEKRVRRYKRRLKDH--HTNGQAALPA-E 108
Query: 217 PVTQVVENDADVQSEEEDDNFVD----EVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+++ D ++E+ D ++ + V ++ ++VSEA+ QLE D F
Sbjct: 109 VAAEILIQSRDDEAEDSVDTGMEIGDAPLTVAETQVQIRTMSVSEAVMQLELQDVPALMF 168
Query: 273 RNEETGEINIVYKRKAGGYGVIIP 296
RN +N+VY+R G G + P
Sbjct: 169 RNASHDGLNMVYRRPDGHIGWVDP 192
>UNIPROTKB|Q2GGH0 [details] [associations]
symbol:ECH_0654 "Putative ribosomal subunit interface
protein" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003489 Pfam:PF02482
EMBL:CP000236 GenomeReviews:CP000236_GR eggNOG:COG1544
GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 OMA:EDNSKET RefSeq:YP_507463.1
ProteinModelPortal:Q2GGH0 STRING:Q2GGH0 GeneID:3927564
KEGG:ech:ECH_0654 PATRIC:20576760 HOGENOM:HOG000127433
ProtClustDB:CLSK749133 BioCyc:ECHA205920:GJNR-656-MONOMER
Uniprot:Q2GGH0
Length = 197
Score = 126 (49.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 41/192 (21%), Positives = 92/192 (47%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++I + ++TD +K+++EE + K K V++++ + K + +
Sbjct: 1 MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMIL-----SKDGNLFNSTI 55
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ K +R + ++T Y +ID S + KL+K K + + RH K N +K +
Sbjct: 56 GISDVKSEFIRISKTSDTAYNAIDDAVSHLCGKLQKHKGERINKYRHNK--NSVKAQMRC 113
Query: 219 TQVVENDADVQSEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V + +++ + + N D +I+ F + +T+ +AI ++E + + F N ++
Sbjct: 114 FGYVLDSNEIEKYDVN-NISDSGLIIEEDVF-VKTMTIGDAIMEMELLSLPAFLFINAKS 171
Query: 278 GEINIVYKRKAG 289
IN++Y + G
Sbjct: 172 NRINMIYAKSDG 183
>TIGR_CMR|ECH_0654 [details] [associations]
symbol:ECH_0654 "putative ribosomal subunit interface
protein" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005840
"ribosome" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003489 Pfam:PF02482 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG1544 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741 OMA:EDNSKET
RefSeq:YP_507463.1 ProteinModelPortal:Q2GGH0 STRING:Q2GGH0
GeneID:3927564 KEGG:ech:ECH_0654 PATRIC:20576760
HOGENOM:HOG000127433 ProtClustDB:CLSK749133
BioCyc:ECHA205920:GJNR-656-MONOMER Uniprot:Q2GGH0
Length = 197
Score = 126 (49.4 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 41/192 (21%), Positives = 92/192 (47%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++I + ++TD +K+++EE + K K V++++ + K + +
Sbjct: 1 MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMIL-----SKDGNLFNSTI 55
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ K +R + ++T Y +ID S + KL+K K + + RH K N +K +
Sbjct: 56 GISDVKSEFIRISKTSDTAYNAIDDAVSHLCGKLQKHKGERINKYRHNK--NSVKAQMRC 113
Query: 219 TQVVENDADVQSEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V + +++ + + N D +I+ F + +T+ +AI ++E + + F N ++
Sbjct: 114 FGYVLDSNEIEKYDVN-NISDSGLIIEEDVF-VKTMTIGDAIMEMELLSLPAFLFINAKS 171
Query: 278 GEINIVYKRKAG 289
IN++Y + G
Sbjct: 172 NRINMIYAKSDG 183
>UNIPROTKB|O30652 [details] [associations]
symbol:O30652 "Putative sigma54 modulation protein"
species:666 "Vibrio cholerae" [GO:0005840 "ribosome" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR003489 Pfam:PF02482 GO:GO:0006355
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
EMBL:AF013987 PIR:G82065 PDB:4FYL PDBsum:4FYL HSSP:P11285
ProteinModelPortal:O30652 DNASU:2615193 PATRIC:20084085
ProtClustDB:CLSK874835 Uniprot:O30652
Length = 95
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+++ IQG +++LTD+++++V K K H + V V L V ++R+ E
Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDH-INHVQVILRVE--------KLRQIAE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASID-LVSSIIQRKLRKIKEKESDH 202
TL + + A D E +YA+ID LV ++ R+L K KEK S H
Sbjct: 52 ATLHVNQ-AEIHAHADDENMYAAIDSLVDKLV-RQLNKHKEKLSSH 95
>TIGR_CMR|VC_2530 [details] [associations]
symbol:VC_2530 "sigma-54 modulation protein, putative"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005840
"ribosome" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR003489 Pfam:PF02482
GO:GO:0006355 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0044238
Gene3D:3.30.160.100 SUPFAM:SSF69754 TIGRFAMs:TIGR00741
EMBL:AF013987 PIR:G82065 PDB:4FYL PDBsum:4FYL HSSP:P11285
ProteinModelPortal:O30652 DNASU:2615193 PATRIC:20084085
ProtClustDB:CLSK874835 Uniprot:O30652
Length = 95
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+++ IQG +++LTD+++++V K K H + V V L V ++R+ E
Sbjct: 1 MQINIQGHHIDLTDSMQDYVHSKFDKLERFFDH-INHVQVILRVE--------KLRQIAE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASID-LVSSIIQRKLRKIKEKESDH 202
TL + + A D E +YA+ID LV ++ R+L K KEK S H
Sbjct: 52 ATLHVNQ-AEIHAHADDENMYAAIDSLVDKLV-RQLNKHKEKLSSH 95
>UNIPROTKB|Q60AV4 [details] [associations]
symbol:yfiA "Ribosomal subunit interface protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003489 Pfam:PF02482 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000264773 KO:K05808
OMA:DQINNVH GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 RefSeq:YP_113243.1 ProteinModelPortal:Q60AV4
GeneID:3103533 KEGG:mca:MCA0740 PATRIC:22605258 Uniprot:Q60AV4
Length = 98
Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/106 (30%), Positives = 59/106 (55%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I G ++++TD +KN+ K + + +H + + +V V LSV +++ E
Sbjct: 1 MQLSISGHHIDVTDALKNYTIGKF-RRLERHFNQLFDVHVILSVE-------KLLQKAEA 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR 204
T+ + AE+ E +YA+ID + + R++ K KEK +DHGR
Sbjct: 53 TVQVAGTQLF-AEDVQEDLYAAIDGLVDKLDRQILKHKEKLNDHGR 97
>UNIPROTKB|Q8EAE4 [details] [associations]
symbol:yhbH "Sigma-54 modulation
protein/ribosome-associated factor YhbH" species:211586 "Shewanella
oneidensis MR-1" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003489 Pfam:PF02482 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000264773 KO:K05808
OMA:DQINNVH GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 HSSP:P11285 RefSeq:NP_719492.1
ProteinModelPortal:Q8EAE4 GeneID:1171598 KEGG:son:SO_3962
PATRIC:23527604 ProtClustDB:CLSK907432 Uniprot:Q8EAE4
Length = 95
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + G ++E+T++++ +VEEK K + +H + V V L+V K +I +
Sbjct: 1 MQIHLSGHHIEITESLRAYVEEKFSK-LERHFEQINNVHVVLNVE-----KMQQIAEARI 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH 202
L G V A + +YA+ID++ + R++ K KEK + H
Sbjct: 55 NL---TGGEVFATSEHADMYAAIDVLIDKLDRQVIKHKEKLTKH 95
>UNIPROTKB|Q9KU23 [details] [associations]
symbol:VC_0706 "Sigma-54 modulation protein, putative"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0005840 "ribosome" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR003489
Pfam:PF02482 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 KO:K05809 OMA:INITSKQ HSSP:P11285 PIR:D82291
RefSeq:NP_230355.1 ProteinModelPortal:Q9KU23 SMR:Q9KU23
DNASU:2615710 GeneID:2615710 KEGG:vch:VC0706 PATRIC:20080525
ProtClustDB:CLSK874079 Uniprot:Q9KU23
Length = 108
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 28/100 (28%), Positives = 55/100 (55%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GKN+E+T ++NH+E K+ K + K +VD+ + + F + P ++
Sbjct: 1 MKINITGKNIEVTSAIRNHIEGKL-KKLEKW-----QVDI-IGCQAS-FSEEPNKQKKFE 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK 198
+ + G + A E +YA+I+ V ++R+L K++ K
Sbjct: 53 AVVSIPRGQLVASAIHEDLYAAINEVEQKLERQLNKLRHK 92
>TIGR_CMR|SO_3962 [details] [associations]
symbol:SO_3962 "ribosomal subunit interface protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR003489 Pfam:PF02482 EMBL:AE014299
GenomeReviews:AE014299_GR HOGENOM:HOG000264773 KO:K05808
OMA:DQINNVH GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 HSSP:P11285 RefSeq:NP_719492.1
ProteinModelPortal:Q8EAE4 GeneID:1171598 KEGG:son:SO_3962
PATRIC:23527604 ProtClustDB:CLSK907432 Uniprot:Q8EAE4
Length = 95
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + G ++E+T++++ +VEEK K + +H + V V L+V K +I +
Sbjct: 1 MQIHLSGHHIEITESLRAYVEEKFSK-LERHFEQINNVHVVLNVE-----KMQQIAEARI 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH 202
L G V A + +YA+ID++ + R++ K KEK + H
Sbjct: 55 NL---TGGEVFATSEHADMYAAIDVLIDKLDRQVIKHKEKLTKH 95
>TIGR_CMR|VC_0706 [details] [associations]
symbol:VC_0706 "sigma-54 modulation protein, putative"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005840
"ribosome" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR003489 Pfam:PF02482
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0044238 Gene3D:3.30.160.100 SUPFAM:SSF69754
TIGRFAMs:TIGR00741 KO:K05809 OMA:INITSKQ HSSP:P11285 PIR:D82291
RefSeq:NP_230355.1 ProteinModelPortal:Q9KU23 SMR:Q9KU23
DNASU:2615710 GeneID:2615710 KEGG:vch:VC0706 PATRIC:20080525
ProtClustDB:CLSK874079 Uniprot:Q9KU23
Length = 108
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 28/100 (28%), Positives = 55/100 (55%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GKN+E+T ++NH+E K+ K + K +VD+ + + F + P ++
Sbjct: 1 MKINITGKNIEVTSAIRNHIEGKL-KKLEKW-----QVDI-IGCQAS-FSEEPNKQKKFE 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK 198
+ + G + A E +YA+I+ V ++R+L K++ K
Sbjct: 53 AVVSIPRGQLVASAIHEDLYAAINEVEQKLERQLNKLRHK 92
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 320 298 0.00094 115 3 11 23 0.43 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 593 (63 KB)
Total size of DFA: 189 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.44u 0.07s 28.51t Elapsed: 00:00:06
Total cpu time: 28.44u 0.07s 28.51t Elapsed: 00:00:06
Start: Fri May 10 15:01:08 2013 End: Fri May 10 15:01:14 2013