BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020905
(320 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224118512|ref|XP_002317839.1| predicted protein [Populus trichocarpa]
gi|222858512|gb|EEE96059.1| predicted protein [Populus trichocarpa]
Length = 306
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/321 (68%), Positives = 250/321 (77%), Gaps = 29/321 (9%)
Query: 2 ATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLS 61
TL TSF ++ ++S S + +S +SSS S+ K+Q+ K+ S
Sbjct: 7 GTLQTSF---------NNPFVSLSPTPPKTSLASSSVIST-----------KTQIPKS-S 45
Query: 62 YNSSFFGPFKQITVMRPTKVHTKPLP-----VRMSWDGPLSSVKLIIQGKNLELTDTVKN 116
SSF G K ++ + + PL V+MSWDGPL SVKLIIQGKNLELTDTVK
Sbjct: 46 LKSSFLG--KNMSFIELGRTARTPLTHGGCSVKMSWDGPLHSVKLIIQGKNLELTDTVKR 103
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
HVE+KVGKAV KHSHLVREVDVRLSVRGGE GKGPRIRRCEVTLFT +HGVVRAEEDAET
Sbjct: 104 HVEDKVGKAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTNRHGVVRAEEDAET 163
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
+YASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV QVVE DAD S++E ++
Sbjct: 164 IYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVPQVVEGDADEVSQQEVED 223
Query: 237 FVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
++EV VR KFF+MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYG+IIP
Sbjct: 224 SIEEV-VRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIP 282
Query: 297 KGNGKAKKLEPLEVETASSSS 317
KGN +A++LEPL VE A SS
Sbjct: 283 KGNDEAERLEPLVVEPARESS 303
>gi|118488335|gb|ABK95986.1| unknown [Populus trichocarpa]
Length = 306
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/289 (70%), Positives = 239/289 (82%), Gaps = 12/289 (4%)
Query: 36 SSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGP-FKQITVMRPTKVHTKPLP-----VR 89
+S++ + S S FV K+Q+ K S F G + + R TK+ PL +R
Sbjct: 20 TSTTPTPSLASSFVNSTKTQVPKVF-LKSRFLGKNVNFVEIRRKTKI---PLSHGGSSIR 75
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MSWDGPLSSVKLIIQGK+LEL+DTVK HVE+KVGKAV K SHLVR VDVRLSVRGGE GK
Sbjct: 76 MSWDGPLSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELGK 135
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
GPRIRRCEVTLFTK+HGVVRAEEDAET++ASIDLVSSIIQRKLRKIK+KESDHGRHMKGF
Sbjct: 136 GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGF 195
Query: 210 NRLKVREPVTQ-VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
NRLKVREP+ Q VVE+DAD S++ED+++++EV VR K+F+MPPLTVSEAIEQLE+V HD
Sbjct: 196 NRLKVREPMHQVVVEDDADEVSQQEDEDYIEEV-VRTKYFDMPPLTVSEAIEQLEHVHHD 254
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
FYGFR+EETGEINI+YKRKAGGYG+IIPKGNG+A++LEPL VE A S
Sbjct: 255 FYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPS 303
>gi|255566888|ref|XP_002524427.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative [Ricinus communis]
gi|223536311|gb|EEF37962.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative [Ricinus communis]
Length = 311
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 197/263 (74%), Positives = 222/263 (84%), Gaps = 5/263 (1%)
Query: 59 TLSYNSSFFGPFKQIT-VMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNH 117
+LS +SF P K + V + VRMSW+GPLSSVKLI QGKNLELTDTVK H
Sbjct: 47 SLSSKTSFLNPLKLGSNVKYFENKRGRRSAVRMSWEGPLSSVKLITQGKNLELTDTVKKH 106
Query: 118 VEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 177
VE+KVGKAV KHSHLVREVDVRLSVRGGEFGKGP+IRRCEVTLFTKKHGV+RAEEDAET+
Sbjct: 107 VEDKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETI 166
Query: 178 YASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQS---EEED 234
YASIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVREPV + V++D D +ED
Sbjct: 167 YASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDED 226
Query: 235 DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++++DEV VR K+F+MPPLTVSEAIEQL+NVDHDFYGFRNEETGEINI+YKRKAGGYG+I
Sbjct: 227 EDYIDEV-VRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGII 285
Query: 295 IPKGNGKAKKLEPLEVETASSSS 317
IPK NGKA+KLEP+ +E A S
Sbjct: 286 IPKENGKAEKLEPVVIEPAREPS 308
>gi|359490749|ref|XP_003634154.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Vitis
vinifera]
Length = 298
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/242 (77%), Positives = 215/242 (88%), Gaps = 1/242 (0%)
Query: 76 MRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE 135
+ T TKPL VRMSWDGPLSSVKLI+QGKNLELTDTV++HVEEKVGKAV KHSHLVRE
Sbjct: 55 LNATTRQTKPLAVRMSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVRE 114
Query: 136 VDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKI 195
VDVRLS+RGGE GKGP+IRRCEVTLFTKKHGVVRAEE AET+Y SID+VSSIIQRKLRKI
Sbjct: 115 VDVRLSIRGGELGKGPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKI 174
Query: 196 KEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTV 255
KEK+SDHGRHMKGFNRLKVR+P T +VE +ADV ++ED + ++E IVR K+F+MPPLTV
Sbjct: 175 KEKDSDHGRHMKGFNRLKVRDPETPLVEEEADVVPQKEDGDLINE-IVRTKYFDMPPLTV 233
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASS 315
EA+EQLENVDHDF+GFRNEETGEINI+YKRKAGGYG+IIPK NGK ++LEP+ V++
Sbjct: 234 PEAVEQLENVDHDFFGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDRE 293
Query: 316 SS 317
S
Sbjct: 294 PS 295
>gi|224134949|ref|XP_002321945.1| predicted protein [Populus trichocarpa]
gi|222868941|gb|EEF06072.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/229 (81%), Positives = 212/229 (92%), Gaps = 2/229 (0%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MSWDGPLSSVKLIIQGK+LEL+DTVK HVE+KVGKAV K SHLVR VDVRLSVRGGE GK
Sbjct: 1 MSWDGPLSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGELGK 60
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
GPRIRRCEVTLFTK+HGVVRAEEDAET++ASIDLVSSIIQRKLRKIK+KESDHGRHMKGF
Sbjct: 61 GPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGF 120
Query: 210 NRLKVREPVTQ-VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
NRLKVREP+ Q VVE+DAD S++ED+++++EV VR K+F+MPPLTVSEAIEQLE+V HD
Sbjct: 121 NRLKVREPMHQVVVEDDADEVSQQEDEDYIEEV-VRTKYFDMPPLTVSEAIEQLEHVHHD 179
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
FYGFR+EETGEINI+YKRKAGGYG+IIPKGNG+A++LEPL VE A S
Sbjct: 180 FYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPS 228
>gi|356516154|ref|XP_003526761.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like [Glycine
max]
Length = 291
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/319 (64%), Positives = 236/319 (73%), Gaps = 33/319 (10%)
Query: 1 MATLSTSFKL-STSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKT 59
MATL F ST RP SCYL S SSS S++ S++ + T
Sbjct: 1 MATL---FNFNSTLRP---SCYLPLSPSSSYPHFSNTLSTTFLGHIV------------T 42
Query: 60 LSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVE 119
L Y ++ T + L RMSWDGPLSSVKLIIQGKNLELTD VK HVE
Sbjct: 43 LKYAAT------------STSNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTDAVKQHVE 90
Query: 120 EKVGKAVLKHSHLVREVDVRLSVRGG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
+KVGKAV KHSHLVREVDVRLS+RGG EFG+GPR RRCEVTLFTK+HGVVRAEEDAE+ Y
Sbjct: 91 DKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTY 150
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFV 238
SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLKVREPV Q+ + ++ S E++ +
Sbjct: 151 GSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPMEEDEILSPREEEESI 210
Query: 239 DEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKG 298
DEV VR K+F+MPPLTV+EAIEQLENVDHDFYGFRNEETGEINIVYKRK GGYG+IIPKG
Sbjct: 211 DEV-VRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKG 269
Query: 299 NGKAKKLEPLEVETASSSS 317
+G+A+KLE + +E A SS
Sbjct: 270 DGEAEKLESVVLEPAIESS 288
>gi|302143982|emb|CBI23087.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/228 (78%), Positives = 207/228 (90%), Gaps = 1/228 (0%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MSWDGPLSSVKLI+QGKNLELTDTV++HVEEKVGKAV KHSHLVREVDVRLS+RGGE GK
Sbjct: 1 MSWDGPLSSVKLILQGKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELGK 60
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
GP+IRRCEVTLFTKKHGVVRAEE AET+Y SID+VSSIIQRKLRKIKEK+SDHGRHMKGF
Sbjct: 61 GPKIRRCEVTLFTKKHGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGF 120
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
NRLKVR+P T +VE +ADV ++ED + ++E IVR K+F+MPPLTV EA+EQLENVDHDF
Sbjct: 121 NRLKVRDPETPLVEEEADVVPQKEDGDLINE-IVRTKYFDMPPLTVPEAVEQLENVDHDF 179
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
+GFRNEETGEINI+YKRKAGGYG+IIPK NGK ++LEP+ V++ S
Sbjct: 180 FGFRNEETGEINILYKRKAGGYGLIIPKENGKTEELEPVVVKSDREPS 227
>gi|10177849|dbj|BAB11201.1| unnamed protein product [Arabidopsis thaliana]
Length = 365
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/238 (78%), Positives = 208/238 (87%), Gaps = 7/238 (2%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 126 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 185
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 186 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 245
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAI 259
MKGFNRLKVREPV + VVE+ D+ V EEE+D+ + E IVR K FEMPPLTV+EA+
Sbjct: 246 MKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKE-IVRTKTFEMPPLTVAEAV 304
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
EQLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 305 EQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 362
>gi|363808026|ref|NP_001241953.1| uncharacterized protein LOC100784915 [Glycine max]
gi|255634767|gb|ACU17745.1| unknown [Glycine max]
Length = 291
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/235 (77%), Positives = 206/235 (87%), Gaps = 2/235 (0%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
+ L MSWDGPLSSVKL IQGKNLELTD VK HVE+KVGKAV KHSHLVREVDVRLS+R
Sbjct: 55 RSLSAHMSWDGPLSSVKLTIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIR 114
Query: 144 GG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH 202
GG EFG+GPR RRCEVTLFTK+HGVVRAEEDAE+ Y SIDLVSSIIQRKLRKIKEK SDH
Sbjct: 115 GGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDH 174
Query: 203 GRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQL 262
GRHMKGFNRLKVREPV Q+ + ++ S +E++ +DEV VR K+F+MPPLTV+EAIEQL
Sbjct: 175 GRHMKGFNRLKVREPVEQLPVEEDEILSPQEEEESIDEV-VRTKYFDMPPLTVAEAIEQL 233
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
ENVDHDFYGFRNEETGEINIVYKRK GGYG+I+PKG+G+A+KLEP+ +E A SS
Sbjct: 234 ENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKLEPVVLEPAIESS 288
>gi|18420800|ref|NP_568447.1| putative 30S ribosomal protein [Arabidopsis thaliana]
gi|13877771|gb|AAK43963.1|AF370148_1 unknown protein [Arabidopsis thaliana]
gi|29824163|gb|AAP04042.1| unknown protein [Arabidopsis thaliana]
gi|332005933|gb|AED93316.1| putative 30S ribosomal protein [Arabidopsis thaliana]
Length = 308
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/238 (78%), Positives = 208/238 (87%), Gaps = 7/238 (2%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 69 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 128
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 129 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 188
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAI 259
MKGFNRLKVREPV + VVE+ D+ V EEE+D+ + E IVR K FEMPPLTV+EA+
Sbjct: 189 MKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKE-IVRTKTFEMPPLTVAEAV 247
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
EQLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 248 EQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 305
>gi|350539988|ref|NP_001233834.1| chloroplast-specific ribosomal protein [Solanum lycopersicum]
gi|51457950|gb|AAU03364.1| chloroplast-specific ribosomal protein [Solanum lycopersicum]
Length = 311
Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/265 (70%), Positives = 216/265 (81%), Gaps = 10/265 (3%)
Query: 56 LAKTLSYNSSFF--GPFKQITVMRPTKVH-TKPLPVRMSWDGPLSSVKLIIQGKNLELTD 112
L+ TLS +S F FK + P + TK VRMSWDGPLSSVKLI+QGKNLELT
Sbjct: 39 LSLTLSSTNSRFLNSAFKMNEINVPVRNRVTKSFGVRMSWDGPLSSVKLILQGKNLELTP 98
Query: 113 TVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 172
VK++VEEK+GKAV KHSHL REVDVRLSVRGGE GKGP+IRRCEVTLFTKKHGV+RAEE
Sbjct: 99 AVKDYVEEKLGKAVQKHSHLAREVDVRLSVRGGELGKGPKIRRCEVTLFTKKHGVIRAEE 158
Query: 173 DAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEE 232
D E++Y SID+VSSIIQRKLRKIKEK+SD GRHMKGF+RLKVR+P +V+ D + S+E
Sbjct: 159 DGESIYGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRDPEALLVQEDLETLSQE 218
Query: 233 ED------DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 286
E+ D FV EV VR K F+MPPL+V+EAIEQLENVDHDFYGFRNEETGEINIVY+R
Sbjct: 219 EEVEDDKSDGFVTEV-VRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRR 277
Query: 287 KAGGYGVIIPKGNGKAKKLEPLEVE 311
K GGYG+IIPK +GK +KLEPLEVE
Sbjct: 278 KEGGYGLIIPKEDGKTEKLEPLEVE 302
>gi|449459188|ref|XP_004147328.1| PREDICTED: ribosome-binding factor PSRP1, chloroplastic-like
[Cucumis sativus]
Length = 310
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 202/316 (63%), Positives = 235/316 (74%), Gaps = 18/316 (5%)
Query: 1 MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL 60
MATL++S + + L S S S SSS+ S +S S + K L
Sbjct: 1 MATLTSSMQAN----------LLSDHSLSPPFHSSSTVSYFPASFSLHFSALK---VHAL 47
Query: 61 SYNSS-FFGP---FKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKN 116
S N+S FF F I + + +RM+WDGPLSSVKLI+QGKNLELT+ VK
Sbjct: 48 SSNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKK 107
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
HVEEKVGKAV KHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 108 HVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 167
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
V+ASIDLVSSIIQRKLRKIKEK+SD GRH+KGF+R KVREP VVE++ + +E+
Sbjct: 168 VFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGE 227
Query: 237 FVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
+DE IVR K+F+MPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYG+IIP
Sbjct: 228 VIDE-IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 286
Query: 297 KGNGKAKKLEPLEVET 312
K NG A+KLEP+ +E
Sbjct: 287 KENGTAEKLEPVTIEA 302
>gi|258611172|gb|ACV83721.1| chloroplast ribosomal protein [Solanum tuberosum]
Length = 280
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 185/259 (71%), Positives = 212/259 (81%), Gaps = 10/259 (3%)
Query: 61 SYNSSFFG-PFKQITVMRPTKVHTKP-LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHV 118
S NS F FK+ + P + K VRMSWDGPLSSVKLI+QGKNLELT VK++V
Sbjct: 17 SSNSGFLNSAFKKNEINVPVRNRVKXSFGVRMSWDGPLSSVKLILQGKNLELTPAVKDYV 76
Query: 119 EEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
EEK+GKAV KHSHL REVDVRLSVRGGE GKGP+IRRCEVTLFTKKHGV+RAEEDAE++Y
Sbjct: 77 EEKLGKAVQKHSHLAREVDVRLSVRGGELGKGPKIRRCEVTLFTKKHGVIRAEEDAESIY 136
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEED---- 234
SID+VSSIIQRKLRKIKEK+SDHGRHMKGF+RLKVR+P +V+ D + +EE+
Sbjct: 137 GSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVRDPEVLLVQEDLETLPQEEEVEDD 196
Query: 235 ---DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGY 291
D FV EV VR K F+MPPL+V+EAIEQLENVDHDFYGFRNEETGEINIVY+RK GGY
Sbjct: 197 DKSDGFVTEV-VRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGY 255
Query: 292 GVIIPKGNGKAKKLEPLEV 310
G+IIPK +GK +KLEPLEV
Sbjct: 256 GLIIPKEDGKTEKLEPLEV 274
>gi|449526335|ref|XP_004170169.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-binding factor PSRP1,
chloroplastic-like [Cucumis sativus]
Length = 310
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 201/316 (63%), Positives = 234/316 (74%), Gaps = 18/316 (5%)
Query: 1 MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL 60
MATL++S + + L S S S SSS+ S +S S + K L
Sbjct: 1 MATLTSSMQAN----------LLSDHSLSPPFHSSSTVSYFPASFSLHFSALK---VHAL 47
Query: 61 SYNSS-FFGP---FKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKN 116
S N+S FF F I + + +RM+WDGPLSSVKLI+QGKNLELT+ VK
Sbjct: 48 SSNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKK 107
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
HVEEKVGKAV KHSHLVREVDVRLSVRGG FGKGPRIRRCEVTLFTKKHGVVRAEEDAET
Sbjct: 108 HVEEKVGKAVQKHSHLVREVDVRLSVRGGXFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 167
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
V+ASIDLVSSIIQRKLRKIKEK+SD GRH+KGF+R KVREP VVE++ + +E+
Sbjct: 168 VFASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGE 227
Query: 237 FVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
+DE IVR K+F+MPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYG+IIP
Sbjct: 228 VIDE-IVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIP 286
Query: 297 KGNGKAKKLEPLEVET 312
K NG A+KLEP+ +E
Sbjct: 287 KENGTAEKLEPVTIEA 302
>gi|297808465|ref|XP_002872116.1| hypothetical protein ARALYDRAFT_489312 [Arabidopsis lyrata subsp.
lyrata]
gi|297317953|gb|EFH48375.1| hypothetical protein ARALYDRAFT_489312 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 361 bits (927), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 185/238 (77%), Positives = 208/238 (87%), Gaps = 7/238 (2%)
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
L V+MSWDGPL+SVKLIIQGKNLEL++ +K HVEEKVGK+V KHSHLVREVDVRLSVRGG
Sbjct: 69 LAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVDVRLSVRGG 128
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKEK+SDHGRH
Sbjct: 129 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRH 188
Query: 206 MKGFNRLKVREPVTQ-VVEN-----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAI 259
MKGFNRLKVREPV + VVE+ D+ + EEE+D+ + E IVR K FEMPPLTV+EA+
Sbjct: 189 MKGFNRLKVREPVIEPVVEDVEDSTDSSLGEEEEEDDLIKE-IVRTKTFEMPPLTVAEAV 247
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
EQLE V HDFYGF+NEETGEINIVYKRK GGYG+IIPK +GKA+K+EPL E + S
Sbjct: 248 EQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHS 305
>gi|357464199|ref|XP_003602381.1| 30S ribosomal protein [Medicago truncatula]
gi|355491429|gb|AES72632.1| 30S ribosomal protein [Medicago truncatula]
Length = 313
Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/232 (73%), Positives = 197/232 (84%), Gaps = 2/232 (0%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-E 146
VRMSWDGPLSSVKLIIQGKN++L D VK HVEEKVG+AV KHS+LVREVDVRLS RGG E
Sbjct: 79 VRMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGE 138
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
FG+GPR RRCEVTLFTK+HGVVRAEE AET YASIDLVSS+IQRKLRKIKEKE+DHGRHM
Sbjct: 139 FGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHM 198
Query: 207 KGFNRLKVREPVTQV-VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENV 265
KG NRLK RE V + E++ ++ ++E++ + E +VR K+F+MPPLTV EAI+QLE V
Sbjct: 199 KGSNRLKFREAVLPLPTEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 258
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
HDFY FRNEE+GE+NIVYKRK GGYG+IIPKGNG+A KLEP+ VE A S
Sbjct: 259 AHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPS 310
>gi|170131|gb|AAA34039.1| ribosomal protein 30S subunit [Spinacia oleracea]
Length = 302
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 168/238 (70%), Positives = 202/238 (84%), Gaps = 12/238 (5%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSAR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP---------VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLT 254
RHMKGFNR KVR+P V + VE+ A EDD+F++EV VR K+F+MPPLT
Sbjct: 180 RHMKGFNRSKVRDPEPVRITREEVLEEVES-APAPVSVEDDDFIEEV-VRTKYFDMPPLT 237
Query: 255 VSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVET 312
++EA+EQLENVDHDFY FRNEETG+INI+YKRK GGYG+IIPK +GK +KLE L V+T
Sbjct: 238 ITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQT 294
>gi|134034|sp|P19954.2|PRSP1_SPIOL RecName: Full=Ribosome-binding factor PSRP1, chloroplastic;
AltName: Full=30S ribosomal protein 1; AltName:
Full=CS-S5; Short=CS5; AltName: Full=Plastid-specific
30S ribosomal protein 1; Short=PSRP-1; AltName:
Full=Ribosomal protein 1; AltName: Full=S22; Flags:
Precursor
gi|12316|emb|CAA41960.1| chloroplast ribosomal protein S22 [Spinacia oleracea]
gi|18031|emb|CAA33403.1| spinach S22 r-protein [Spinacia oleracea]
Length = 302
Score = 343 bits (880), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 168/238 (70%), Positives = 202/238 (84%), Gaps = 12/238 (5%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSAR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP---------VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLT 254
RHMKGFNR KVR+P V + VE+ A EDD+F++EV VR K+F+MPPLT
Sbjct: 180 RHMKGFNRSKVRDPEPVRITREEVLEEVES-APAPVSVEDDDFIEEV-VRTKYFDMPPLT 237
Query: 255 VSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVET 312
++EA+EQLENVDHDFY FRNEETG+INI+YKRK GGYG+IIPK +GK +KLE L V+T
Sbjct: 238 ITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQT 294
>gi|388502796|gb|AFK39464.1| unknown [Medicago truncatula]
Length = 353
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/232 (72%), Positives = 196/232 (84%), Gaps = 2/232 (0%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-E 146
VRMSWDGPLSSVKLIIQGKN++L D VK HVEEKVG+AV KHS+LVRE DVRLS RGG E
Sbjct: 119 VRMSWDGPLSSVKLIIQGKNMQLNDAVKQHVEEKVGRAVQKHSYLVREADVRLSTRGGGE 178
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
FG+GPR RRCEVTLFTK+HGVVRAEE AET YASIDLVSS+IQRKLRKIKEKE+DHGRHM
Sbjct: 179 FGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHM 238
Query: 207 KGFNRLKVREPVTQV-VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENV 265
KG NRLK RE V + E++ ++ ++E++ + E +VR K+F+MPPLTV EAI+QLE V
Sbjct: 239 KGSNRLKFREAVLPLPTEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 298
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSS 317
HDFY FRNEE+GE+NIVYKRK GGYG+IIPKGNG+A KLEP+ VE A S
Sbjct: 299 AHDFYAFRNEESGEVNIVYKRKEGGYGLIIPKGNGEADKLEPIVVEPAKEPS 350
>gi|148907338|gb|ABR16805.1| unknown [Picea sitchensis]
Length = 321
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 156/298 (52%), Positives = 202/298 (67%), Gaps = 21/298 (7%)
Query: 22 LSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTL------SYNSSFFG-PFKQIT 74
L ++ S + ++ SSS+ + +P P KS L + S+NSS G +
Sbjct: 4 LVCTTGQSGFLTCTALSSSNGEAYTPAAVPLKSSLLSRVTPTILSSFNSSIQGHGLRWKF 63
Query: 75 VMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR 134
+ P ++ W GPLSSV+LIIQGKN +LTD VK ++EEKVG AV KH++LVR
Sbjct: 64 SVCPIVTSSRGQINCTLWSGPLSSVRLIIQGKNFQLTDAVKAYIEEKVGIAVQKHANLVR 123
Query: 135 EVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK 194
EVDVRLS+RGGE GKGP+IRRCEVTLFTKKHGVVRAEE+AET+YASID+VS II+RKLRK
Sbjct: 124 EVDVRLSIRGGEVGKGPKIRRCEVTLFTKKHGVVRAEEEAETIYASIDIVSDIIRRKLRK 183
Query: 195 IKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEED-------------DNFVDEV 241
IKEK+ HGR K + K+ E ++ VV + + + +E D D+ DEV
Sbjct: 184 IKEKDGGHGRPSKMRKQPKLGELLSTVVMDVKETRDKELDDLADVEEMRYEKIDDLSDEV 243
Query: 242 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGN 299
VR K+FEMPP++ EA+EQL NVDHDFY FRN E+GE+N++YKRK GGYG+I+PK N
Sbjct: 244 -VRTKYFEMPPMSPEEALEQLMNVDHDFYAFRNMESGEVNVLYKRKHGGYGLIVPKNN 300
>gi|218194143|gb|EEC76570.1| hypothetical protein OsI_14401 [Oryza sativa Indica Group]
gi|222626202|gb|EEE60334.1| hypothetical protein OsJ_13433 [Oryza sativa Japonica Group]
Length = 301
Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 180/247 (72%), Gaps = 21/247 (8%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 41 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 100
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 101 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 160
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSE---------EEDDNF 237
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ ED++
Sbjct: 161 IIKRKLRKIKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDT 219
Query: 238 VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
V +VR K FEMPPL+V EA+EQL NVDH+FY FR+E+TGE+N++YKRK GG+G+I+PK
Sbjct: 220 VLTKVVRTKVFEMPPLSVEEAMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPK 279
Query: 298 GNGKAKK 304
G+G K
Sbjct: 280 GDGHLHK 286
>gi|115456699|ref|NP_001051950.1| Os03g0856500 [Oryza sativa Japonica Group]
gi|30102988|gb|AAP21401.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|41393260|gb|AAS01983.1| putative ribosomal protein [Oryza sativa Japonica Group]
gi|108712193|gb|ABF99988.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|113550421|dbj|BAF13864.1| Os03g0856500 [Oryza sativa Japonica Group]
gi|215692514|dbj|BAG87934.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737784|dbj|BAG96914.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 309
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 142/247 (57%), Positives = 180/247 (72%), Gaps = 21/247 (8%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 49 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 108
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 109 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 168
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSE---------EEDDNF 237
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ ED++
Sbjct: 169 IIKRKLRKIKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDT 227
Query: 238 VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
V +VR K FEMPPL+V EA+EQL NVDH+FY FR+E+TGE+N++YKRK GG+G+I+PK
Sbjct: 228 VLTKVVRTKVFEMPPLSVEEAMEQLVNVDHNFYAFRDEKTGEMNVLYKRKEGGFGLIVPK 287
Query: 298 GNGKAKK 304
G+G K
Sbjct: 288 GDGHLHK 294
>gi|388510614|gb|AFK43373.1| unknown [Medicago truncatula]
Length = 273
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 141/193 (73%), Positives = 164/193 (84%), Gaps = 2/193 (1%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-E 146
VRMSWDGPLSSVKLIIQGKN++L D K HVEEKVG+AV KHS+LVREVDVRLS RGG E
Sbjct: 79 VRMSWDGPLSSVKLIIQGKNMQLNDAAKQHVEEKVGRAVQKHSYLVREVDVRLSTRGGGE 138
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
FG+GPR RRCEVTLFTK+HGVVRAEE AET YASIDLVSS+IQRKLRKIKEKE+DHGRHM
Sbjct: 139 FGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYASIDLVSSVIQRKLRKIKEKETDHGRHM 198
Query: 207 KGFNRLKVREPVTQV-VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENV 265
KG NRLK RE V + E++ ++ ++E++ + E +VR K+F+MPPLTV EAI+QLE V
Sbjct: 199 KGSNRLKFREAVLPLPTEDETEISPQKEEEEELIEEVVRTKYFDMPPLTVFEAIDQLEMV 258
Query: 266 DHDFYGFRNEETG 278
HDFY FRNEE+G
Sbjct: 259 AHDFYAFRNEESG 271
>gi|118489730|gb|ABK96666.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 268
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/231 (64%), Positives = 177/231 (76%), Gaps = 21/231 (9%)
Query: 36 SSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGP---FKQITVMRPTKVHTKPLP----- 87
+S++ + S S FV K+Q+ K S F G F +I R TK+ PL
Sbjct: 20 TSTTPTPSLASSFVNSTKTQVPKVF-LKSRFLGKNVNFAEIR--RKTKI---PLSHGGSS 73
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+RMSWDGPLSSVKLIIQGK+LEL+DTVK HVE+KVGKAV K SHLVR VDVRLSVRGGE
Sbjct: 74 IRMSWDGPLSSVKLIIQGKHLELSDTVKKHVEDKVGKAVQKSSHLVRGVDVRLSVRGGEL 133
Query: 148 GKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK 207
GKGPRIRRCEVTLFTK+HGVVRAEEDAET+YASIDL SSIIQRKLRKIK+KESDHGRHMK
Sbjct: 134 GKGPRIRRCEVTLFTKRHGVVRAEEDAETIYASIDLASSIIQRKLRKIKDKESDHGRHMK 193
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMP 251
GFNRLKVREP+ QVVE+DAD S++ED+++++EV I + +F +P
Sbjct: 194 GFNRLKVREPMHQVVEDDADEVSQQEDEDYIEEVSFLNFCLIKLISWFRLP 244
>gi|414874019|tpg|DAA52576.1| TPA: plastid-specific 30S ribosomal protein 1 [Zea mays]
Length = 307
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 194/276 (70%), Gaps = 7/276 (2%)
Query: 33 SSSSSSSSSSSSVSPFVTPRKSQLAKTLSYN-SSFFG---PFKQITVMRPTKVHTKPLPV 88
++++ S S++++ + R+S A +LS S F G + T+ + V
Sbjct: 2 AATAMCPSPSAAITRHIHARRSCAAASLSLRRSGFLGRVVLAAVPVAVDATRRRRVSVSV 61
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG 148
RM+WDGPLSSV+LI+Q +N +L++ +K H+E+KVG+AV KH HLVREVDVRLS RGGE G
Sbjct: 62 RMAWDGPLSSVRLIMQSRNAKLSEKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG 121
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHM 206
+GP+ RCE+TLFTK+HGV+RAEEDAE+ YASIDL ++I++RKLRKIKEKE++ G
Sbjct: 122 RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRKIKEKETEVRRGGDA 181
Query: 207 KG-FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENV 265
G ++ + + + +D + ED+ V +VR K FEMPPLTV EA+EQLENV
Sbjct: 182 DGVWDEIPPADLLPPAEADDLEAAVGAEDEQTVLAKVVRTKVFEMPPLTVEEALEQLENV 241
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGK 301
DHDFY FR+E TG++NI+Y+RK GGYG+IIPK +GK
Sbjct: 242 DHDFYCFRDEATGQVNILYRRKEGGYGLIIPKNDGK 277
>gi|226528966|ref|NP_001151285.1| plastid-specific 30S ribosomal protein 1 [Zea mays]
gi|195645526|gb|ACG42231.1| plastid-specific 30S ribosomal protein 1 [Zea mays]
Length = 309
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 194/276 (70%), Gaps = 7/276 (2%)
Query: 33 SSSSSSSSSSSSVSPFVTPRKSQLAKTLSYN-SSFFG---PFKQITVMRPTKVHTKPLPV 88
++++ S S++++ + R+S A +LS S F G + T+ + V
Sbjct: 2 AATAMCPSPSAAITRHIHARRSCAAASLSLRRSGFLGRVVLAAVPVAVDATRRRRVSVSV 61
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG 148
RM+WDGPLSSV+LI+Q +N +L++ +K H+E+KVG+AV KH HLVREVDVRLS RGGE G
Sbjct: 62 RMAWDGPLSSVRLIMQSRNAKLSEKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGGELG 121
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHM 206
+GP+ RCE+TLFTK+HGV+RAEEDAE+ YASIDL ++I++RKLRKIKEKE++ G
Sbjct: 122 RGPKTSRCEITLFTKRHGVLRAEEDAESTYASIDLAAAIVKRKLRKIKEKETEVRRGGDA 181
Query: 207 KG-FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENV 265
G ++ + + + +D + ED+ V +VR K FEMPPLTV EA+EQLENV
Sbjct: 182 DGVWDEIPPADLLPPAEADDLEAAVGAEDEETVLAKVVRTKVFEMPPLTVEEALEQLENV 241
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGK 301
DHDFY FR+E TG++NI+Y+RK GGYG+IIPK +GK
Sbjct: 242 DHDFYCFRDEATGQVNILYRRKEGGYGLIIPKNDGK 277
>gi|242037341|ref|XP_002466065.1| hypothetical protein SORBIDRAFT_01g000590 [Sorghum bicolor]
gi|241919919|gb|EER93063.1| hypothetical protein SORBIDRAFT_01g000590 [Sorghum bicolor]
Length = 310
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 196/282 (69%), Gaps = 20/282 (7%)
Query: 34 SSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGPFKQITVMRPTKVHTK--------P 85
+++ S S S++++ PR S A +++ S F G + + + P V
Sbjct: 2 ATAMSPSPSAAIARPSHPR-SCAAASVALRSGFLG--RGLAAVVPVAVDDPRCRLRRRVS 58
Query: 86 LPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG 145
VRM+WDGPLSSV+LI+QG+N++L+D +K H+E+KVG+AV KH HLVREVDVRLS RGG
Sbjct: 59 FSVRMAWDGPLSSVRLIMQGRNVKLSDKLKEHIEDKVGRAVSKHCHLVREVDVRLSARGG 118
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
E G+GP+ RCE+TLF+K+HGV+RAEEDAE+ YASIDL ++II+RKLRKIKEKE++ R
Sbjct: 119 ELGRGPKTSRCEITLFSKRHGVLRAEEDAESTYASIDLAAAIIKRKLRKIKEKETEVRRD 178
Query: 206 MKGFNRLKVREPVTQVVENDADVQSEE-------EDDNFVDEVIVRMKFFEMPPLTVSEA 258
G E + + +D V+++E ED+ V +VR K FEMPPLTV EA
Sbjct: 179 GDGGAGGAWEEELPLL--DDDLVEADELAAAVGAEDEQTVVAKVVRTKVFEMPPLTVEEA 236
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNG 300
+EQL+NV H+FY FR+E TG++NI+Y+RK GGYG+IIPK +G
Sbjct: 237 LEQLDNVGHNFYCFRDEATGQVNILYRRKEGGYGLIIPKEDG 278
>gi|357115740|ref|XP_003559644.1| PREDICTED: 30S ribosomal protein 1, chloroplastic-like
[Brachypodium distachyon]
Length = 290
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 178/254 (70%), Gaps = 9/254 (3%)
Query: 59 TLSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHV 118
+ S F G T +R + + V+ +WDGPLSS +LI+QG+N++LT+ +K H+
Sbjct: 26 CCALRSGFLGRALTATSLRRRPAASVSVSVQAAWDGPLSSARLIMQGRNVKLTEKLKEHI 85
Query: 119 EEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
EEKVG+AV HSHLVREVDVRLS RGGE GKGP+ RCE+TLFTK+HGVVRAEE+ E+ Y
Sbjct: 86 EEKVGRAVSNHSHLVREVDVRLSARGGELGKGPKASRCEITLFTKRHGVVRAEEEEESSY 145
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEE------ 232
ASID+ +++++RKLRKIKEKE+D RH+KG + + + + E+
Sbjct: 146 ASIDVAAAVVKRKLRKIKEKETD-VRHLKGSKEWQTAAAAAFSESDVDEEEDEDELVEVI 204
Query: 233 --EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGG 290
ED+ V +VR K FEM PLTV EA+EQLENVDHDFY FRNE+TGE+NI+YKRK GG
Sbjct: 205 GAEDEETVLTKVVRTKVFEMAPLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGG 264
Query: 291 YGVIIPKGNGKAKK 304
+G+IIPK +G K
Sbjct: 265 FGLIIPKQDGHVDK 278
>gi|168045979|ref|XP_001775453.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673256|gb|EDQ59782.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/299 (50%), Positives = 196/299 (65%), Gaps = 31/299 (10%)
Query: 23 SSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFG-------PFKQITV 75
++S + SS+ S+++ + +S +S +A + S NSSF G F + V
Sbjct: 10 AASVACCSSARLPQSNAAGRAGLSSSFLRLESTVAVS-SLNSSFHGHACLDVSNFGKSGV 68
Query: 76 -MRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR 134
M+ +V T M+W G L+ V+L+IQGK+LELTD +K +VEEKVG AV S LV+
Sbjct: 69 EMQKGRVTTC-----MAWGGTLAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVK 123
Query: 135 EVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK 194
EVDVR+SVRGGE G+G R++RCEVTLFTKKHGVVRAEE+AE++YASID VS +I RKLRK
Sbjct: 124 EVDVRMSVRGGETGRGERLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRK 183
Query: 195 IKEKESDHGRHMKGFNRLKVREPVTQVVEN---DADVQSEEEDDNFVDEVIVRMKFFEMP 251
IKEK+ HGR K R + +V+ N D D E + D+ DEV VR K+FEM
Sbjct: 184 IKEKDGGHGRPAKYSPR------IGEVLSNEVVDLDPILERKPDDLPDEV-VRTKYFEMR 236
Query: 252 PLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK-------GNGKAK 303
P+ EA+EQL NV HDFY FRN E+GEINI+YKR GGYG+I+P+ GNG +K
Sbjct: 237 PMKPLEALEQLVNVGHDFYAFRNVESGEINILYKRTHGGYGIIVPRNDESWEAGNGASK 295
>gi|326502706|dbj|BAJ98981.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 301
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/234 (54%), Positives = 163/234 (69%), Gaps = 31/234 (13%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
WDGPLSS +LI+QG+N++LT+ +K H+E+KVG+AV H+HLVREVDVRLS RGG+ KGP
Sbjct: 66 WDGPLSSARLIMQGRNVKLTEKLKEHIEDKVGRAVSNHAHLVREVDVRLSARGGDLSKGP 125
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
++ RCEVTLFT++HGVVRAEE+ E+ YASID +++++RKLRKIKEKE+D RH+KG
Sbjct: 126 KLSRCEVTLFTRRHGVVRAEEEEESSYASIDAAAAVVKRKLRKIKEKETD-VRHLKGTKE 184
Query: 212 LKVREPVTQVVENDADVQS---------------------EEEDDNFVDEVIVRMKFFEM 250
+ DAD ED+ V +VR K FEM
Sbjct: 185 WQA---------ADADATGFSDVEEESELELEEDDLVEVIGAEDEETVLTKVVRTKVFEM 235
Query: 251 PPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKK 304
PLTV EA+EQLENVDHDFY FRNE+TGE+NI+YKRK GG+G+IIPK +G K
Sbjct: 236 APLTVDEALEQLENVDHDFYAFRNEQTGEVNILYKRKEGGFGLIIPKQDGHVDK 289
>gi|151935415|gb|ABS18746.1| protein kinase [Oryza sativa Japonica Group]
Length = 321
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/256 (50%), Positives = 169/256 (66%), Gaps = 27/256 (10%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 49 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 108
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 109 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 168
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSE---------EEDDNF 237
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ ED++
Sbjct: 169 IIKRKLRKIKEKETDV-RHLKGTKPPVSDWPPSLLDNNDDDAQAQLKDLEEAVGAEDEDT 227
Query: 238 VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
V +VR K FEMPPL+ EA+EQL N DH F+ + G +++ G +G I+P+
Sbjct: 228 VLTRVVRTKVFEMPPLSGEEAMEQLGNGDHTFHALPRRKNGGDEPPVQKEGGRFGPIVPQ 287
Query: 298 GNGKAKKLEPLEVETA 313
G+G PL+ ET+
Sbjct: 288 GDG------PLQRETS 297
>gi|168011837|ref|XP_001758609.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690219|gb|EDQ76587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 221
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 129/221 (58%), Positives = 163/221 (73%), Gaps = 9/221 (4%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
M+W G L+ V+L+IQGK+LELTD +K +VEEKVG AV S LV+EVDVR+SVRGGE G+
Sbjct: 1 MAWGGALAGVRLVIQGKHLELTDAIKQYVEEKVGNAVHNQSALVKEVDVRMSVRGGETGR 60
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
G +++RCEVTLFTKKHGVVRAEE+AE++YASID VS +I RKLRKIKEK+ HGR K
Sbjct: 61 GGKLQRCEVTLFTKKHGVVRAEEEAESMYASIDRVSDVISRKLRKIKEKDGGHGRPTKSR 120
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
+ ++ E ++ V D D + D+ DE IVR K+FEM P+ EA+EQL NV HDF
Sbjct: 121 HSPRIGEVLSDEV-VDLDPILGRKPDDLPDE-IVRTKYFEMRPMKPLEALEQLVNVGHDF 178
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIPK-------GNGKAK 303
Y FRN E+GEINI+YKR GGYG+I+P+ GNG +K
Sbjct: 179 YAFRNVESGEINILYKRTHGGYGIIVPRNEEAWEAGNGVSK 219
>gi|255640826|gb|ACU20696.1| unknown [Glycine max]
Length = 208
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/238 (59%), Positives = 159/238 (66%), Gaps = 32/238 (13%)
Query: 1 MATLSTSFKL-STSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKT 59
MATL F ST RP SCYL S SSS S++ S++ + T
Sbjct: 1 MATL---FNFNSTLRP---SCYLPLSPSSSYPHFSNTLSTTFLGHIV------------T 42
Query: 60 LSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVE 119
L Y ++ T + L RMSWDGPLSSVKLIIQGKNLELTD VK HVE
Sbjct: 43 LKYAAT------------STSNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTDAVKRHVE 90
Query: 120 EKVGKAVLKHSHLVREVDVRLSVRGG-EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178
+KVGKAV KHSHLVREVDVRLS+RGG EFG+GPR RRCEVTLFTK+HGVVRAEEDAE+ Y
Sbjct: 91 DKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTY 150
Query: 179 ASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDN 236
SIDLVSSIIQRKLRKIKEK SDHGRHMKGFNRLK+ P + D + EE+ N
Sbjct: 151 GSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKLGSPWSITYGRDEILSPREEEIN 208
>gi|302788097|ref|XP_002975818.1| hypothetical protein SELMODRAFT_175159 [Selaginella moellendorffii]
gi|300156819|gb|EFJ23447.1| hypothetical protein SELMODRAFT_175159 [Selaginella moellendorffii]
Length = 259
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/215 (53%), Positives = 159/215 (73%), Gaps = 17/215 (7%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+ M+W G L+S++L+IQGK+LELT+ +K +VE+KVGKAV H++LV EVDVRLSVRGGE
Sbjct: 43 ISMAWAGSLASIRLVIQGKHLELTEALKAYVEDKVGKAVHNHAYLVMEVDVRLSVRGGES 102
Query: 148 GKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK 207
G+G ++++CEVT+FTKKHGVVRAEE +++Y++ID VS ++ RKLRKIKE++ HGR +
Sbjct: 103 GRGQKLQKCEVTMFTKKHGVVRAEEATDSMYSAIDRVSDVVARKLRKIKERDG-HGRRLP 161
Query: 208 G-----FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQL 262
+R P T V E+ +F DE IVR K F+MPPL +++A++ +
Sbjct: 162 SHVGEILSRESSSAPPTPAV----------EEPDFPDE-IVRTKIFDMPPLKINDAMDHM 210
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
NV HDFY FRN E+GE+NI+YKRK GGYG+IIP+
Sbjct: 211 ANVGHDFYAFRNAESGEVNILYKRKEGGYGIIIPR 245
>gi|302783995|ref|XP_002973770.1| hypothetical protein SELMODRAFT_25079 [Selaginella moellendorffii]
gi|300158808|gb|EFJ25430.1| hypothetical protein SELMODRAFT_25079 [Selaginella moellendorffii]
Length = 205
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/216 (53%), Positives = 159/216 (73%), Gaps = 18/216 (8%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+ M+W G L+S++L+IQGK+LELT+ +K +VE+KVGKAV H++LV EVDVRLSVRGGE
Sbjct: 1 ISMAWAGSLASIRLVIQGKHLELTEALKAYVEDKVGKAVHNHAYLVMEVDVRLSVRGGES 60
Query: 148 GKGPRIRRCE-VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
G+G ++++CE VT+FTKKHGVVRAEE +++Y++ID VS ++ RKLRKIKEK+ HGR +
Sbjct: 61 GRGQKLQKCEVVTMFTKKHGVVRAEEATDSMYSAIDRVSDVVARKLRKIKEKDG-HGRRL 119
Query: 207 KG-----FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQ 261
+R P T V E+ +F DE IVR K F+MPPL +++A++
Sbjct: 120 PSHVGEILSRESSTAPPTPAV----------EEPDFPDE-IVRTKIFDMPPLKINDAMDH 168
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
+ N+ HDFY FRN E+GE+NI+YKRK GGYG+IIP+
Sbjct: 169 MANIGHDFYAFRNAESGEVNILYKRKEGGYGIIIPR 204
>gi|227070|prf||1613445A ribosomal protein CS-S5
Length = 321
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 106/134 (79%), Positives = 124/134 (92%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSSR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP 217
RHMKGFNR KVR+P
Sbjct: 180 RHMKGFNRSKVRDP 193
>gi|108712194|gb|ABF99989.1| Plastid-specific 30S ribosomal protein 1, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
Length = 241
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 123/168 (73%), Gaps = 12/168 (7%)
Query: 78 PTKVHTKPL-----------PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV 126
P H +PL VRMSWDGPLSSV+LI+QG+N++L + VK H+EEK G+AV
Sbjct: 49 PAAAHPQPLLAAESRRSSAVSVRMSWDGPLSSVRLIMQGRNVKLNEKVKEHIEEKAGRAV 108
Query: 127 LKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSS 186
KHS LV+EVDVRLS RGGE +GP+I RCE+TLFTK+HGV+RAEEDAE+ YASIDL SS
Sbjct: 109 AKHSQLVKEVDVRLSARGGELSRGPKICRCEITLFTKRHGVIRAEEDAESTYASIDLASS 168
Query: 187 IIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEED 234
II+RKLRKIKEKE+D RH+KG P + + ND D Q++ +D
Sbjct: 169 IIKRKLRKIKEKETD-VRHLKGTKPPVSDWPPSLLDNNDDDAQAQLKD 215
>gi|224105233|ref|XP_002333842.1| predicted protein [Populus trichocarpa]
gi|222838715|gb|EEE77080.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/143 (64%), Positives = 111/143 (77%), Gaps = 16/143 (11%)
Query: 108 LELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV 167
++LTDTVK HVE+KVGKAV K SHLVREVD RLSVRGGE GKGPRIR+C +HGV
Sbjct: 1 MQLTDTVKEHVEDKVGKAVQKFSHLVREVDARLSVRGGELGKGPRIRKC-------RHGV 53
Query: 168 VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD 227
VRAEED+ET+YA+IDLV SIIQ KLRK+KE ESDHGRHMKG NRLK+R +DAD
Sbjct: 54 VRAEEDSETIYATIDLVLSIIQSKLRKMKE-ESDHGRHMKGLNRLKIR--------DDAD 104
Query: 228 VQSEEEDDNFVDEVIVRMKFFEM 250
S +EDD+++DE++ + +M
Sbjct: 105 AVSRKEDDDYLDELVSVASYHQM 127
>gi|443313524|ref|ZP_21043135.1| ribosomal subunit interface protein [Synechocystis sp. PCC 7509]
gi|442776467|gb|ELR86749.1| ribosomal subunit interface protein [Synechocystis sp. PCC 7509]
Length = 215
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 131/217 (60%), Gaps = 35/217 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+ELTD ++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIELTDAIREYVHQKIEKAVNHFQSLTTEVDVHLSV-----ARNPRISSKQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KE+ R
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKER----------------R 98
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV----------IVRMKFFEMPPLTVSEAIEQLENV 265
+ VE +V SEE+ D + +VR K+F MPP+TVSEA+EQL+NV
Sbjct: 99 QANKASVETTVEVDSEEQIPLVSDLIGDRTPQLPAEVVRTKYFAMPPMTVSEALEQLQNV 158
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKA 302
DHDFY F N E+GEIN++Y+R GGYGVI P+ NG A
Sbjct: 159 DHDFYMFCNAESGEINVIYERNHGGYGVIQPRNNGHA 195
>gi|220909826|ref|YP_002485137.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Cyanothece
sp. PCC 7425]
gi|219866437|gb|ACL46776.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7425]
Length = 209
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 130/207 (62%), Gaps = 19/207 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++++V++K+ KA +L E+DV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIRDYVQQKIEKAANHFQNLTTEIDVHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++T V+RAEE +E +YASIDLVS I R+LRK KE+ D +H + V
Sbjct: 56 AEVTIYTNG-SVIRAEESSENLYASIDLVSDKIARQLRKFKERRQD--KHSRSKEEPVVS 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
P+ + D + EE +VR K+F MPP+T+ EA+EQLE VDHDFY FRN
Sbjct: 113 VPLVTDLTGDRTPELPEE--------VVRTKYFAMPPMTLREALEQLELVDHDFYMFRNA 164
Query: 276 ETGEINIVYKRKAGGYGVIIPKGNGKA 302
ETGEIN++Y+R GGYGVI P+ A
Sbjct: 165 ETGEINVIYERNHGGYGVIQPRNGSSA 191
>gi|427728357|ref|YP_007074594.1| ribosomal subunit interface protein [Nostoc sp. PCC 7524]
gi|427364276|gb|AFY46997.1| ribosomal subunit interface protein [Nostoc sp. PCC 7524]
Length = 217
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D + N + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKISRQLRKYKERRQDKKTQAQPTNEVVVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+PV + D + EE +VR K+F MPP+T++EA+EQL+ V HDFY FRN
Sbjct: 115 QPVVADLIGDRTPELPEE--------VVRTKYFSMPPMTLAEALEQLQLVGHDFYMFRNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKGN 299
ETGEIN++Y+R GGYGVI P+ N
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNN 190
>gi|434392591|ref|YP_007127538.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Gloeocapsa
sp. PCC 7428]
gi|428264432|gb|AFZ30378.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Gloeocapsa
sp. PCC 7428]
Length = 211
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 134/220 (60%), Gaps = 22/220 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV +L EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDGIREYVHQKIEKAVNHFQNLTNEVDVHLSV-----ARNPRINDRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASID+V+ I RKLRK KEK D + + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDMVADKIARKLRKYKEKRHDKKTQVPEKTSIAV- 113
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EP V + D E + E +VR K+F MPP+T++EA+EQL+ VDHDFY FRN
Sbjct: 114 EPAPVVEDLIGDRTPE------LPEEVVRTKYFAMPPMTITEALEQLQLVDHDFYMFRNA 167
Query: 276 ETGEINIVYKRKAGGYGVIIPKG------NGKAKKLEPLE 309
ETGEIN++Y+R GGYGVI P+ NG A+ P E
Sbjct: 168 ETGEINVIYERNHGGYGVIQPRNSNGNTKNGNAESTSPAE 207
>gi|428318443|ref|YP_007116325.1| SSU ribosomal protein S30P [Oscillatoria nigro-viridis PCC 7112]
gi|428242123|gb|AFZ07909.1| SSU ribosomal protein S30P [Oscillatoria nigro-viridis PCC 7112]
Length = 217
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/227 (44%), Positives = 139/227 (61%), Gaps = 22/227 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +KV KAV +L EVD+ LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVNQKVEKAVSHFQNLTTEVDIHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE E++YASIDLV+ I R+LRK KEK D+ H V
Sbjct: 56 AEVTIYANG-SVIRAEESTESLYASIDLVADKIARQLRKFKEKRHDNKTHSSVKTVTAVE 114
Query: 216 E-PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E PV + D + E +VR K+F MPP+TV +A+EQL+ +DHDFY FRN
Sbjct: 115 EHPVVADLIGDRTPELPAE--------VVRTKYFAMPPMTVQQALEQLQIIDHDFYMFRN 166
Query: 275 EETGEINIVYKRKA-GGYGVIIPK---GNGKAKKLEPLEVETASSSS 317
ET EIN++Y+RK+ GGYGVI P+ GNG +K + E T+ SS
Sbjct: 167 AETDEINVLYERKSHGGYGVIQPRHSNGNGNSKNGKTAESATSEKSS 213
>gi|428308720|ref|YP_007119697.1| 30S ribosomal protein S30 [Microcoleus sp. PCC 7113]
gi|428250332|gb|AFZ16291.1| SSU ribosomal protein S30P [Microcoleus sp. PCC 7113]
Length = 216
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 137/209 (65%), Gaps = 23/209 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVHQKIEKAVNHFQNMTTEVDVHLSV-----ARNPRINSKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ IQR+LRK KEK +H K ++ K
Sbjct: 56 AEVTIYANG-TVIRAQEGSEDLYASIDLVADKIQRQLRKYKEKL----QHKKTHDQPKTG 110
Query: 216 EPVTQV-VEND--ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
V QV V +D D +E D +VRMK+F MPP+T+ EA+EQL+ VDHDFY F
Sbjct: 111 IVVEQVPVPDDLIGDRTAELPSD------VVRMKYFAMPPMTMEEALEQLQLVDHDFYMF 164
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK-GNG 300
RN +TGEIN++Y+R GGYGVI P+ GNG
Sbjct: 165 RNAKTGEINVIYERNHGGYGVIQPRNGNG 193
>gi|354568064|ref|ZP_08987230.1| sigma 54 modulation protein/ribosomal protein S30EA [Fischerella
sp. JSC-11]
gi|353541029|gb|EHC10499.1| sigma 54 modulation protein/ribosomal protein S30EA [Fischerella
sp. JSC-11]
Length = 219
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 20/224 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKV 214
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D H + G +
Sbjct: 56 AEVTIYANG-NVIRAEESSENLYASIDLVADKIARQLRKYKERRHDKKTHAQTGIEGVVQ 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ VT ++ N A EE +VR K+F MPP+TV+EA+EQL+ V HDFY FRN
Sbjct: 115 QTVVTDLIGNRAPELPEE---------VVRTKYFAMPPMTVTEALEQLQLVGHDFYMFRN 165
Query: 275 EETGEINIVYKRKAGGYGVIIPKG-NGKAKKLEPLEVETASSSS 317
ETGEIN++Y+R GGYGVI P+ NG +TA +S+
Sbjct: 166 SETGEINVIYERNHGGYGVIQPRNSNGHINHTNGKNGKTAHTST 209
>gi|428224035|ref|YP_007108132.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Geitlerinema sp. PCC 7407]
gi|427983936|gb|AFY65080.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Geitlerinema sp. PCC 7407]
Length = 215
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 25/210 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV +L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVHQKIEKAVNHFQNLTMEVDVHLSV-----ARNPRINPKQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RAEE +E +YASIDLV+ I R+LRK KEK ++H KG
Sbjct: 56 AEVTIYANG-TIIRAEESSENLYASIDLVADKIARQLRKYKEKRNNH----KG------- 103
Query: 216 EPVTQVVENDADVQSEEED--DNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
+P +V AD D + E+ ++R K+F MPP+TV EA+EQLE VDHDFY
Sbjct: 104 QPSARVETGTADASFSVPDLIGDRAPELPPEVIRTKYFAMPPMTVEEALEQLELVDHDFY 163
Query: 271 GFRNEETGEINIVYKRKAGGYGVIIPKGNG 300
FRN ETGEIN++Y+R GGYG++ P G G
Sbjct: 164 MFRNAETGEINVIYERNHGGYGLLQPHGEG 193
>gi|119509863|ref|ZP_01629006.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nodularia
spumigena CCY9414]
gi|119465472|gb|EAW46366.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nodularia
spumigena CCY9414]
Length = 213
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 127/204 (62%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRITTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+F V+RAEE +E +YASIDLV+ I R+LRK KE+ D + N++ V
Sbjct: 56 AEVTIFANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERLQDQKTNAPPTNQVLVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPV + D + E +VR K+F MPP+TV+EA EQL+ V HDFY F N
Sbjct: 115 EPVAADLIGDRTPELPNE--------VVRTKYFSMPPMTVAEATEQLQLVGHDFYMFHNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKGN 299
ETGEIN++Y+R GGYGVI P+ N
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRHN 190
>gi|384245406|gb|EIE18900.1| hypothetical protein COCSUDRAFT_31477 [Coccomyxa subellipsoidea
C-169]
Length = 274
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 150/229 (65%), Gaps = 8/229 (3%)
Query: 74 TVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV 133
+V +P + H L + S+VK+I QG+++E+T +K +VE+K+ K V+K+ +
Sbjct: 46 SVHQPHRQHRNTLKISAVASAQPSTVKIITQGRHVEVTPALKKYVEDKLSKVVVKYEAAI 105
Query: 134 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR 193
+EVDVRLS GG+ KGP+ ++ E+T++T ++G+VRAE+ E++YASIDLVS + RKLR
Sbjct: 106 KEVDVRLSASGGDASKGPKKQKTEITIYTLRNGIVRAEDVEESMYASIDLVSDKVARKLR 165
Query: 194 KIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD-----VQSEEEDDNFVDEVIVRMKFF 248
K+KEK GR G + E + Q + ++A+ + +++E F + +VR K F
Sbjct: 166 KMKEKAISRGR-WAGPGGPRGGETIGQSLPSEAEDLVDKLPTDQEAAAFPE--VVRTKTF 222
Query: 249 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
+ P+++ +A+EQ+E V H F+ FR++ + ++ ++YKRK GYGVI+P+
Sbjct: 223 VLEPMSLEDALEQVEQVGHPFFVFRDKSSKQVRVLYKRKTRGYGVIVPQ 271
>gi|440684186|ref|YP_007158981.1| SSU ribosomal protein S30P [Anabaena cylindrica PCC 7122]
gi|428681305|gb|AFZ60071.1| SSU ribosomal protein S30P [Anabaena cylindrica PCC 7122]
Length = 211
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 130/206 (63%), Gaps = 19/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRISTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ DH N +
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQPIPTNEVVAP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPVT ++ D E + +VR K+F MPP+T++EA EQL+ V HDFY FRN
Sbjct: 115 EPVTDLI---GDRTPELPGE------VVRTKYFSMPPMTLAEAQEQLQLVGHDFYMFRNA 165
Query: 276 ETGEINIVYKRKAGGYGVIIPK-GNG 300
ETGEIN++Y+R GG+GVI P+ GNG
Sbjct: 166 ETGEINVIYERNHGGFGVIQPRNGNG 191
>gi|254410321|ref|ZP_05024100.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Coleofasciculus chthonoplastes PCC 7420]
gi|196182527|gb|EDX77512.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Coleofasciculus chthonoplastes PCC 7420]
Length = 215
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 131/206 (63%), Gaps = 18/206 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD+++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDSIREYVNQKIEKAVNHFQNMTTEVDVHLSV-----ARNPRINTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ K V+RA+E +E +YASIDLV+ IQR+LRK KEK+ + +
Sbjct: 56 AEVTIYANK-TVIRAQESSEDLYASIDLVADKIQRQLRKYKEKQQKKTQTQPKTGAVIHE 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
PV + + D + E +VRMK+F MPP+T+ EA EQL+ VDHDFY FRN
Sbjct: 115 APVVEDLIGDRTPELPTE--------VVRMKYFAMPPMTIEEATEQLQLVDHDFYMFRNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPK-GNG 300
+T EIN++Y+R GGYGVI P+ GNG
Sbjct: 167 KTDEINVIYERNHGGYGVIQPRNGNG 192
>gi|434403339|ref|YP_007146224.1| SSU ribosomal protein S30P [Cylindrospermum stagnale PCC 7417]
gi|428257594|gb|AFZ23544.1| SSU ribosomal protein S30P [Cylindrospermum stagnale PCC 7417]
Length = 215
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 128/206 (62%), Gaps = 18/206 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D N V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDQKTQPIPTNEAIVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPV + D + +E +VR K+F MPP+T++EA EQL+ V HDFY FRN
Sbjct: 115 EPVATDLIGDRTPELPDE--------VVRTKYFSMPPMTLAEAQEQLQMVGHDFYMFRNS 166
Query: 276 ETGEINIVYKRKAGGYGVIIPK-GNG 300
ETGEIN++Y+R GGYGVI P+ GNG
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNGNG 192
>gi|334119952|ref|ZP_08494036.1| sigma 54 modulation protein/ribosomal protein S30EA [Microcoleus
vaginatus FGP-2]
gi|333457593|gb|EGK86216.1| sigma 54 modulation protein/ribosomal protein S30EA [Microcoleus
vaginatus FGP-2]
Length = 217
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 137/227 (60%), Gaps = 22/227 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV L EVD+ LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVNQKLEKAVSHFQTLTTEVDIHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE E++YASIDLV+ I R+LRK KEK D+ V
Sbjct: 56 AEVTIYANG-SVIRAEESTESLYASIDLVADKIARQLRKFKEKRHDNKTQSSAKTVTVVD 114
Query: 216 E-PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E PV + D + E +VR K+F MPP+TV EA+EQL+ +DHDFY FRN
Sbjct: 115 EHPVVADLIGDRTPELPAE--------VVRTKYFAMPPMTVQEALEQLQIIDHDFYMFRN 166
Query: 275 EETGEINIVYKRKA-GGYGVIIPK---GNGKAKKLEPLEVETASSSS 317
ETGEIN++Y+RK+ GYGVI P+ GNG +K + E T+ SS
Sbjct: 167 AETGEINVLYERKSHSGYGVIQPRHSNGNGNSKNGKTAESATSEKSS 213
>gi|443317350|ref|ZP_21046763.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 6406]
gi|442783039|gb|ELR92966.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 6406]
Length = 218
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 133/221 (60%), Gaps = 39/221 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+T+ ++++VE+K+ KAV HL EVDV LSV + RI +
Sbjct: 1 MKLVIQGKNIEITEAIQDYVEQKISKAVSHFKHLTNEVDVNLSV-----ARNHRITPKQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVTL+ VVRAEE +E +YASIDLV++ I R+LR+ KEK D + F+ +K
Sbjct: 56 AEVTLYING-AVVRAEESSENLYASIDLVANKITRQLRRYKEKRQD-----RNFSPVK-- 107
Query: 216 EPVTQVVENDADVQSEEEDDNF----------VDEVIVRMKFFEMPPLTVSEAIEQLENV 265
NDA + E N + E +VR K+F MPP++V +A+E LE V
Sbjct: 108 -------PNDALITPETPTTNVSEVLKSKAPQLPEAVVRTKYFAMPPMSVEDALEHLELV 160
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPK------GNG 300
DHDFY F N ETGEIN++Y+R GGYG++ P+ GNG
Sbjct: 161 DHDFYMFLNGETGEINVIYERNHGGYGLLQPRQAEQMNGNG 201
>gi|409989363|ref|ZP_11272976.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Arthrospira platensis str. Paraca]
gi|291567386|dbj|BAI89658.1| light repressed protein [Arthrospira platensis NIES-39]
gi|409939776|gb|EKN80827.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Arthrospira platensis str. Paraca]
Length = 212
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 129/213 (60%), Gaps = 24/213 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKNLE+TD + +V++K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNLEITDAIHEYVQQKIAKAVSHFQQLTNEVDVHLSV-----ARNPRINPRQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KEK + + +
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKYKEKRMAKQYQLPKTGEVVAQ 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P+ + D V+ EE +VR K+F MPP+++ EA+EQL+ +DHDFY FRN
Sbjct: 115 KPIVDDLIGDRTVKLPEE--------VVRTKYFAMPPMSIQEALEQLQLIDHDFYMFRNA 166
Query: 276 ETGEINIVYKR-KAGGYGVI------IPKGNGK 301
ET EIN++Y+R GGYGVI +P NGK
Sbjct: 167 ETDEINVIYQRSHHGGYGVIQPRNGSVPTSNGK 199
>gi|428217228|ref|YP_007101693.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Pseudanabaena sp. PCC 7367]
gi|427989010|gb|AFY69265.1| SSU ribosomal protein S30P,sigma 54 modulation protein
[Pseudanabaena sp. PCC 7367]
Length = 192
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 130/205 (63%), Gaps = 19/205 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD + ++V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIHDYVSQKIDKAVSHFQNMTTEVDVHLSV-----ARNPRIAANQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I RKLRK KE++ NR V+
Sbjct: 56 AEVTIYANG-AVIRAEERSENLYASIDLVADKISRKLRKFKERKK---------NRNAVK 105
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
V VVE + + + E +VR K+F MPP++V EA+EQLE VDHDF+ FRN
Sbjct: 106 TSVA-VVEQAPLPVPQGDRQPTMPEKVVRNKYFNMPPMSVDEALEQLELVDHDFFVFRNL 164
Query: 276 ETGEINIVYKRKAGGYGVIIPKGNG 300
E+ EIN+VY+R GG+GVI P GNG
Sbjct: 165 ESNEINVVYERNHGGFGVIQPHGNG 189
>gi|282896861|ref|ZP_06304867.1| Sigma 54 modulation protein/ribosomal protein S30EA [Raphidiopsis
brookii D9]
gi|281198270|gb|EFA73160.1| Sigma 54 modulation protein/ribosomal protein S30EA [Raphidiopsis
brookii D9]
Length = 208
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/206 (43%), Positives = 127/206 (61%), Gaps = 19/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+ L+I GKN+E+T ++ +V +K+ KAV ++ +VD+ LSV + PRI +
Sbjct: 1 MNLVIHGKNIEITGAIREYVHQKIEKAVSHFQNVTNQVDIHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KE+ DH N V
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKERRQDHKTQPISTNEALVS 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPVT ++ E +VR K+F MPP+TV++A EQL+ V HDFY FRN
Sbjct: 115 EPVTDLIAGRTPELPGE---------VVRTKYFSMPPMTVAQAQEQLQLVGHDFYMFRNA 165
Query: 276 ETGEINIVYKRKAGGYGVIIPK-GNG 300
E+GEIN++Y+R GGYGVI P+ GNG
Sbjct: 166 ESGEINVIYERNHGGYGVIQPRNGNG 191
>gi|209523036|ref|ZP_03271593.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
maxima CS-328]
gi|376004092|ref|ZP_09781852.1| putative light repressed protein, LrtA-like [Arthrospira sp. PCC
8005]
gi|423062459|ref|ZP_17051249.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
platensis C1]
gi|209496623|gb|EDZ96921.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
maxima CS-328]
gi|375327530|emb|CCE17605.1| putative light repressed protein, LrtA-like [Arthrospira sp. PCC
8005]
gi|406716367|gb|EKD11518.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrospira
platensis C1]
Length = 212
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 128/206 (62%), Gaps = 19/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKNLE+TD + +V++K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNLEITDAIHEYVQQKIAKAVSHFQQLTNEVDVHLSV-----ARNPRINPRQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KEK + + +
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKYKEKRMAKQYQLPKTGEVVAQ 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P+ + D V+ EE +VR K+F MPP+++ EA+EQL+ +DHDFY FRN
Sbjct: 115 KPIVDDLIGDRTVKLPEE--------VVRTKYFAMPPMSIQEALEQLQLIDHDFYMFRNA 166
Query: 276 ETGEINIVYKR-KAGGYGVIIPKGNG 300
ET EIN++Y+R GGYGVI P+ NG
Sbjct: 167 ETDEINVIYQRSHHGGYGVIQPR-NG 191
>gi|428214890|ref|YP_007088034.1| 30S ribosomal protein S30 [Oscillatoria acuminata PCC 6304]
gi|428003271|gb|AFY84114.1| SSU ribosomal protein S30P [Oscillatoria acuminata PCC 6304]
Length = 213
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 137/216 (63%), Gaps = 30/216 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR---IRR 155
+KL+I GKN+E+T+ ++ +V +KV KAV +L EVDV LSV K PR +
Sbjct: 1 MKLVIHGKNIEITEAIREYVNQKVEKAVSHFQNLTTEVDVHLSV-----AKNPRNNSKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+F ++RAEE +E +YASIDLV+ I R+LRK KEK RH + KV+
Sbjct: 56 AEVTIFANG-TIIRAEESSENLYASIDLVADKIARQLRKYKEK-----RHAQ-----KVQ 104
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE-------VIVRMKFFEMPPLTVSEAIEQLENVDHD 268
P T N+A ++ + ++ + E +VR K+F MPP++V EA+EQL+ VDHD
Sbjct: 105 APDTL---NEALLEEQPLVEDLIGERTPELPEEVVRTKYFAMPPMSVLEALEQLQLVDHD 161
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK-GNGKAK 303
FY FRN +TGEIN++Y+R GGYGV+ P+ GNG+ K
Sbjct: 162 FYMFRNADTGEINVIYERNHGGYGVLQPRNGNGQTK 197
>gi|17230676|ref|NP_487224.1| light-repressed protein [Nostoc sp. PCC 7120]
gi|17132279|dbj|BAB74883.1| light-repressed protein [Nostoc sp. PCC 7120]
Length = 213
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 126/204 (61%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE++ D + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKISRQLRKYKERKQDQKTQAQPTTETIVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E V + D + EE +VR K+F MPP+TV+EA+EQL+ V HDFY F N
Sbjct: 115 ETVVADLIGDRTPELPEE--------VVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKGN 299
ETGEIN++Y+R GGYGVI P+ N
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNN 190
>gi|428207601|ref|YP_007091954.1| 30S ribosomal protein S30 [Chroococcidiopsis thermalis PCC 7203]
gi|428009522|gb|AFY88085.1| SSU ribosomal protein S30P [Chroococcidiopsis thermalis PCC 7203]
Length = 213
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 132/209 (63%), Gaps = 25/209 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVNQKIEKAVNHFQTLTTEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KEK D K L+
Sbjct: 56 AEVTIYANG-TVIRAEESSENLYASIDLVADKIARQLRKYKEKLQDKKTQPK--TSLEAV 112
Query: 216 EP--VTQVV-ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
EP V ++ + ++ SE +VR K+F MPP+T++EA+EQL+ VDHDFY F
Sbjct: 113 EPPVVNDLIGDRTPELPSE----------VVRTKYFAMPPMTLNEALEQLQLVDHDFYMF 162
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK-GNG 300
RN ETGEIN++Y+R GGYGVI P+ GNG
Sbjct: 163 RNAETGEINVIYERNHGGYGVIQPRNGNG 191
>gi|300869058|ref|ZP_07113660.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oscillatoria sp. PCC 6506]
gi|300332969|emb|CBN58856.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oscillatoria sp. PCC 6506]
Length = 215
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 126/203 (62%), Gaps = 18/203 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD ++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDAIREYVNQKIDKAVNHFQTLTTEVDVHLSV-----ARNPRINTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KEK D +
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKFKEKRQDKTHTNPKVGDVVAE 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPV + D + E ++R K+F MPP+T+ EA+EQL+ +DHDFY FRN
Sbjct: 115 EPVVSDLIGDRTPELPSE--------VLRSKYFAMPPMTMQEALEQLQVIDHDFYMFRNA 166
Query: 276 ETGEINIVYKRK-AGGYGVIIPK 297
ETGEIN++Y+RK GGYGVI P+
Sbjct: 167 ETGEINVIYERKHHGGYGVIQPR 189
>gi|22298376|ref|NP_681623.1| light repressed protein A [Thermosynechococcus elongatus BP-1]
gi|22294555|dbj|BAC08385.1| lrtA [Thermosynechococcus elongatus BP-1]
Length = 209
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 129/199 (64%), Gaps = 13/199 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L+I GKN+++TD +++++ +K+ +A +++ EVDV LSV P+ + EV
Sbjct: 1 MRLVIHGKNIDITDGIRSYLNQKIERATSHFQNVINEVDVHLSVARNR-STAPK-QTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F V+RAEE +E +YASIDLV+ I RKLRK+KEK D R K N + E V
Sbjct: 59 TVFVNG-SVIRAEESSENLYASIDLVADKIARKLRKLKEKRQDKSR-AKDTNSVVEPEVV 116
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T +V D Q E+ +VRMK+F MPP+T+ EA+E LE VDHDFY FRN +TG
Sbjct: 117 TDLV-GDRTPQLPEQ--------VVRMKYFAMPPMTIQEALEHLEMVDHDFYVFRNRDTG 167
Query: 279 EINIVYKRKAGGYGVIIPK 297
EIN+VY+R GGYGVI P+
Sbjct: 168 EINVVYERNHGGYGVIQPR 186
>gi|282898830|ref|ZP_06306817.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Cylindrospermopsis raciborskii CS-505]
gi|281196357|gb|EFA71267.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Cylindrospermopsis raciborskii CS-505]
Length = 208
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 128/206 (62%), Gaps = 19/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+ L+I GKN+E+TD ++ +V +K+ KAV ++ +VD+ LSV + PRI +
Sbjct: 1 MNLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNQVDIHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KE+ +H N V
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKERRQEHKTQPIPTNEALVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPVT ++ E +VR K+F MPP+T+++A EQL+ V HDFY FRN
Sbjct: 115 EPVTDLIAGRTPELPGE---------VVRTKYFSMPPMTLAQAQEQLQLVGHDFYMFRNA 165
Query: 276 ETGEINIVYKRKAGGYGVIIPK-GNG 300
E+GEIN++Y+R GGYGVI P+ GNG
Sbjct: 166 ESGEINVIYERNHGGYGVIQPRNGNG 191
>gi|298491755|ref|YP_003721932.1| sigma 54 modulation protein/ribosomal protein S30EA ['Nostoc
azollae' 0708]
gi|298233673|gb|ADI64809.1| sigma 54 modulation protein/ribosomal protein S30EA ['Nostoc
azollae' 0708]
Length = 214
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 129/216 (59%), Gaps = 22/216 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ +AV + EV+V LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIERAVNHFQSITNEVNVHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ DH N V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDHKTQPIPTNEAVVA 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPV + D + E +VR K+F MPP+T++EA EQL+ V HDFY FRN
Sbjct: 115 EPVADSLIGDRTPELPGE--------VVRTKYFPMPPMTLAEAQEQLQLVGHDFYMFRNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKG-----NGKAKKLE 306
ETGEIN++Y+R GGYGVI P+ NGK K +
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNGNRHTNGKNGKTD 202
>gi|411118432|ref|ZP_11390813.1| SSU ribosomal protein S30P [Oscillatoriales cyanobacterium JSC-12]
gi|410712156|gb|EKQ69662.1| SSU ribosomal protein S30P [Oscillatoriales cyanobacterium JSC-12]
Length = 214
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/207 (46%), Positives = 131/207 (63%), Gaps = 20/207 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD+++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDSIREYVNQKIEKAVNHFQTMITEVDVHLSV-----ARNPRINSKQV 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD-HGRHMKGFNRLKV 214
EVT++ VVRAEE +E +YASID+V+ I R+LRK KEK D + +K L
Sbjct: 56 AEVTIYVNG-SVVRAEEGSENLYASIDMVADKISRQLRKYKEKRYDKYHPSVKTAEVLSD 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ VT++ N + +VR K+F MPP++V EA+EQLE VDHDFY FRN
Sbjct: 115 QPVVTELPTNRTPELPAQ---------VVRTKYFAMPPMSVQEALEQLELVDHDFYVFRN 165
Query: 275 EETGEINIVYKRKAGGYGVIIP-KGNG 300
ETGEIN+VY+R GGYGVI P + NG
Sbjct: 166 AETGEINVVYERNHGGYGVIQPRRSNG 192
>gi|86609975|ref|YP_478737.1| ribosomal subunit interface protein [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558517|gb|ABD03474.1| ribosomal subunit interface protein [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 190
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 129/204 (63%), Gaps = 22/204 (10%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRC 156
KL+IQGKN+E+TD ++++V+EK+ +AV + + EVDV LSV + PRI +
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVSHFAQITSEVDVNLSV-----ARNPRISASQSA 57
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASID V+ + RKLRK KE+ H RH + +
Sbjct: 58 EVTVYANG-TVIRAEESSENLYASIDRVADKLARKLRKYKERNGIHRVRHTPKTSVAVAQ 116
Query: 216 EPVTQVV--ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+PVT + E A++ +E +VR K+F MPP+TV EA+ QLE VDHDFY FR
Sbjct: 117 QPVTDPLNTERQAELPAE----------VVRTKYFAMPPMTVQEALHQLELVDHDFYVFR 166
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N E GEIN++Y R GGYG+I P+
Sbjct: 167 NIENGEINVIYVRNHGGYGLIRPR 190
>gi|75910086|ref|YP_324382.1| 30S ribosomal protein S30P / sigma 54 modulation protein [Anabaena
variabilis ATCC 29413]
gi|75703811|gb|ABA23487.1| SSU ribosomal protein S30P [Anabaena variabilis ATCC 29413]
Length = 213
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 125/204 (61%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE++ D V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKISRQLRKYKERKQDQKTQALPTTETIVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E V + D + EE +VR K+F MPP+TV+EA+EQL+ V HDFY F N
Sbjct: 115 ETVVADLIGDRTPELPEE--------VVRTKYFSMPPMTVTEALEQLQLVGHDFYMFHNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKGN 299
ETGEIN++Y+R GGYGVI P+ N
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNN 190
>gi|427716053|ref|YP_007064047.1| 30S ribosomal protein S30 [Calothrix sp. PCC 7507]
gi|427348489|gb|AFY31213.1| SSU ribosomal protein S30P [Calothrix sp. PCC 7507]
Length = 221
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/204 (44%), Positives = 125/204 (61%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVNHFQNITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDKITQSPPTTDVLVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPV + D + E +VR K+F MPP+T++EA+EQL+ V HDFY F N
Sbjct: 115 EPVAADLIGDRTPELPNE--------VVRTKYFSMPPMTLAEALEQLQLVGHDFYMFHNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKGN 299
ETGEIN++Y+R GGYGVI P+ N
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRQN 190
>gi|255087800|ref|XP_002505823.1| predicted protein [Micromonas sp. RCC299]
gi|226521093|gb|ACO67081.1| predicted protein [Micromonas sp. RCC299]
Length = 284
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 136/205 (66%), Gaps = 10/205 (4%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLK-HSHLVREVDVRLSVRGGEFGKGP--RI 153
+S K+I+QG++LE+TD+++ + EEK+ KAV H VREVDVR S RGG K P +
Sbjct: 78 ASTKVIVQGRHLEITDSIREYAEEKINKAVAHFDQHDVREVDVRCSSRGGADKKTPGGAL 137
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE-SDHGRHMKGFNRL 212
++ EVT++T+ +G++R+EE+A+ +YASID VS ++RKLRK+KEK+ S +H K +
Sbjct: 138 QKTEVTVYTR-NGIIRSEEEADDLYASIDAVSDKLERKLRKVKEKKISKRPKHNKNAPKA 196
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+ V ++ D + E D DEV VR KF + TV EA E++EN+ H F+ F
Sbjct: 197 QTDAIVEEMQAADEALADESMD---YDEV-VREKFHPVRKCTVYEAAEEMENLGHTFFAF 252
Query: 273 RNEETG-EINIVYKRKAGGYGVIIP 296
RN G E+N+VYKR AGGYGVI+P
Sbjct: 253 RNVAQGNEVNVVYKRDAGGYGVIVP 277
>gi|414077869|ref|YP_006997187.1| sigma 54 modulation protein/ribosomal protein S30EA [Anabaena sp.
90]
gi|413971285|gb|AFW95374.1| sigma 54 modulation protein/ribosomal protein S30EA [Anabaena sp.
90]
Length = 211
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 125/202 (61%), Gaps = 17/202 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KAV ++ +VDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQNITNQVDVHLSV-----ARNPRISTKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I R+LRK KEK DH N +
Sbjct: 56 AEVTIYANG-SVIRAEESSESLYASIDLVADKIARQLRKYKEKRQDHKTQPISTNEVVAP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E V + D + +E +VR K+F MPP+T++EA EQL+ V HDFY F N
Sbjct: 115 ETVAADLIGDRTAELPQE--------VVRTKYFSMPPMTLAEAQEQLQLVGHDFYMFHNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
E+GEIN++Y+R GGYGVI P+
Sbjct: 167 ESGEINVIYERNHGGYGVIQPR 188
>gi|86607067|ref|YP_475830.1| ribosomal subunit interface protein [Synechococcus sp. JA-3-3Ab]
gi|86555609|gb|ABD00567.1| ribosomal subunit interface protein [Synechococcus sp. JA-3-3Ab]
Length = 191
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 126/201 (62%), Gaps = 18/201 (8%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRC 156
KL+IQGKN+E+TD ++++V+EK+ +AV + + EVDV LSV + PRI +
Sbjct: 3 KLVIQGKNVEITDAIRSYVQEKIERAVKHFAQITSEVDVNLSV-----ARNPRISANQSA 57
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASID V+ + RKLRK KE+ H RH + +
Sbjct: 58 EVTVYANG-TVIRAEESSENLYASIDRVADKLARKLRKYKERNGVHRIRHSPKTSVAVAQ 116
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P+T + + + E +VR K+F MPP+TV EA+ QLE VDHDFY FRN
Sbjct: 117 QPLTDPLNTERQAELPPE--------VVRTKYFAMPPMTVQEALHQLELVDHDFYVFRNI 168
Query: 276 ETGEINIVYKRKAGGYGVIIP 296
E GEIN++Y RK GGYG+I P
Sbjct: 169 ENGEINVIYVRKHGGYGLIRP 189
>gi|427706899|ref|YP_007049276.1| 30S ribosomal protein S30 [Nostoc sp. PCC 7107]
gi|427359404|gb|AFY42126.1| SSU ribosomal protein S30P [Nostoc sp. PCC 7107]
Length = 216
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 129/204 (63%), Gaps = 17/204 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+T+ ++++V +K+ KAV ++ EVDV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITEAIRDYVHQKIEKAVSHFQNITNEVDVHLSV-----ARNPRINPKQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D H + + V
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDKKTHAQSTTEVVVP 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EPV + D + E +VR K+F MPP+T++EA+EQL+ V HDFY FRN
Sbjct: 115 EPVVPDLIGDRTPELPSE--------VVRTKYFSMPPMTLAEALEQLQLVGHDFYMFRNA 166
Query: 276 ETGEINIVYKRKAGGYGVIIPKGN 299
ETGEIN++Y+R GGYGVI P+ N
Sbjct: 167 ETGEINVIYERNHGGYGVIQPRNN 190
>gi|254422790|ref|ZP_05036508.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Synechococcus sp. PCC 7335]
gi|196190279|gb|EDX85243.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Synechococcus sp. PCC 7335]
Length = 224
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 127/208 (61%), Gaps = 9/208 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD +++HV +K+ KA L+ +VDV LSV+ PRI +
Sbjct: 1 MKLVIQGKNIEITDAIRSHVHQKIEKATAHFQTLINKVDVCLSVQNN-----PRIAPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+F + VVRAEE +E++YASID+V+ + R+LRK KEK D +
Sbjct: 56 AEVTVFLN-NVVVRAEESSESLYASIDMVTDKLTRQLRKYKEKRRDQDHATVRPTDVDAT 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ ++AD+ + + +VR K+F MPP+TV A+E LE V HDFY FRN
Sbjct: 115 INAPDITSHNADISEVLNHQPKLPDTVVRSKYFAMPPMTVQTALENLELVGHDFYMFRNV 174
Query: 276 ETGEINIVYKRKAGGYGVIIPKGNGKAK 303
ETGEIN++Y+R GYG++ P+ N + K
Sbjct: 175 ETGEINVIYERNHKGYGLLQPRQNHQTK 202
>gi|427739220|ref|YP_007058764.1| 30S ribosomal protein S30 [Rivularia sp. PCC 7116]
gi|427374261|gb|AFY58217.1| SSU ribosomal protein S30P [Rivularia sp. PCC 7116]
Length = 221
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/201 (44%), Positives = 124/201 (61%), Gaps = 20/201 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KA H+ EVDV LSV K PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHFHHITNEVDVHLSV-----AKNPRINPNQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV- 214
EVT++ ++RAEE +E +YASIDLV++ I R+LRK KE+ D H + N ++
Sbjct: 56 AEVTIYANG-NIIRAEESSENLYASIDLVANKIARQLRKYKERRRDKKIHDRTNNIEEII 114
Query: 215 -REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
E VT ++ + EE +VR K+F MPP+TVS+A+EQL V HDFY F
Sbjct: 115 PEEMVTDLIGDRTPELPEE---------VVRTKYFAMPPMTVSQALEQLRLVGHDFYMFH 165
Query: 274 NEETGEINIVYKRKAGGYGVI 294
N ET EIN++Y+R GGYGVI
Sbjct: 166 NSETDEINVIYERNHGGYGVI 186
>gi|257061006|ref|YP_003138894.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8802]
gi|256591172|gb|ACV02059.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8802]
Length = 205
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 137/215 (63%), Gaps = 17/215 (7%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
D + S+KL+IQG N+++T+++ ++V+EK+ KAV + +VDV LSV +
Sbjct: 1 MDNGVLSMKLLIQGNNIDVTESIHDYVQEKLEKAVKHFQSITTKVDVHLSV-----ARNA 55
Query: 152 RI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
RI + EVT++ V+RA+E +E++YASIDLVS I R+LRK KEK ++ K
Sbjct: 56 RITNKHKAEVTVYANG-TVIRAQEGSESLYASIDLVSDKIARQLRKYKEKLNNK----KA 110
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
N +KV E VT + D+ + + + ++RMK+F MPP+T+ EA+ QLE VDHD
Sbjct: 111 PNPVKVGE-VTTATAIEGDLIGDRTPE--LPAEVIRMKYFAMPPMTIDEALHQLELVDHD 167
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPKG-NGKA 302
FY FRN++T EIN++Y+R GGYGVI P G NG
Sbjct: 168 FYMFRNKDTDEINVIYQRNHGGYGVIQPHGSNGNG 202
>gi|443474991|ref|ZP_21064955.1| sigma 54 modulation protein/ribosomal protein S30EA [Pseudanabaena
biceps PCC 7429]
gi|443020248|gb|ELS34231.1| sigma 54 modulation protein/ribosomal protein S30EA [Pseudanabaena
biceps PCC 7429]
Length = 191
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 128/204 (62%), Gaps = 25/204 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+T+ ++ +VE+K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEVTEAIREYVEQKIDKAVSHFQALTTEVDVHLSV-----ARNPRIASSQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I RKLRK KE++++ L+
Sbjct: 56 AEVTVYANG-SVIRAEEKSENLYASIDLVADKISRKLRKFKERKTERAAAKTSVAVLE-- 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+P + +DN V E+ +VR K+F MP L+V EA+E+LE +DHDFY F
Sbjct: 113 QPPLPL-----------PNDNRVVELPSQVVRNKYFAMPALSVDEALERLELIDHDFYVF 161
Query: 273 RNEETGEINIVYKRKAGGYGVIIP 296
RN +TGEIN+VY+R GGYGVI P
Sbjct: 162 RNADTGEINVVYERNHGGYGVIQP 185
>gi|186683153|ref|YP_001866349.1| sigma 54 modulation protein/ribosomal protein S30EA [Nostoc
punctiforme PCC 73102]
gi|186465605|gb|ACC81406.1| sigma 54 modulation protein/ribosomal protein S30EA [Nostoc
punctiforme PCC 73102]
Length = 214
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 128/208 (61%), Gaps = 23/208 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I KN+E+TD ++ +V +K+ KA + EVDV LSV + PRI +
Sbjct: 1 MKLVIHSKNIEITDAIREYVHQKIEKAASHFQSITNEVDVHLSV-----ARNPRINTRQA 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I R+LRK KE+ D K +
Sbjct: 56 AEVTIYANG-SVIRAEESSENLYASIDLVADKIARQLRKYKERRQDQ----------KTQ 104
Query: 216 EPVTQVVENDADVQSEEEDDN--FVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
T+VV ++ V D +EV VR K+F MPP+T++EA+EQL+ V HDFY FR
Sbjct: 105 SQPTEVVVAESVVPDLIGDRTPELPNEV-VRTKYFSMPPMTLAEALEQLQLVGHDFYMFR 163
Query: 274 NEETGEINIVYKRKAGGYGVIIPK-GNG 300
N ETGEIN++Y+R GGYGVI P+ GNG
Sbjct: 164 NSETGEINVIYERNHGGYGVIHPRNGNG 191
>gi|359457749|ref|ZP_09246312.1| high light inducible protein [Acaryochloris sp. CCMEE 5410]
Length = 212
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 131/208 (62%), Gaps = 18/208 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KA + +L E+DV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHYQNLTTEIDVHLSV-----ARNPRITTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-- 213
EVTLF V+RAEE +E +YASIDLV+ I R+LRK KEK G + KG NR K
Sbjct: 56 AEVTLFVNG-SVIRAEESSENLYASIDLVADKIARQLRKYKEKRQTKGPN-KGSNRSKAV 113
Query: 214 -VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
++ P Q + D E + E +VR K+F + P++V +A+EQL+ VDHDFY F
Sbjct: 114 ALQTPEEQPLIGDLTRDRAPE----LPEEVVRCKYFAISPMSVHDALEQLDLVDHDFYVF 169
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK-GN 299
N +TG++N++Y+R GGYGVI P+ GN
Sbjct: 170 ENADTGQLNVIYERNHGGYGVIQPRQGN 197
>gi|158336225|ref|YP_001517399.1| high light inducible protein [Acaryochloris marina MBIC11017]
gi|158306466|gb|ABW28083.1| high light inducible protein [Acaryochloris marina MBIC11017]
Length = 212
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 131/208 (62%), Gaps = 18/208 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+I GKN+E+TD ++ +V +K+ KA + +L E+DV LSV + PRI +
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAANHYQNLTTEIDVHLSV-----ARNPRITTKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-- 213
EVTLF V+RAEE +E +YASIDLV+ I R+LRK KEK G + KG NR K
Sbjct: 56 AEVTLFVNG-SVIRAEESSENLYASIDLVADKIARQLRKYKEKRQTKGPN-KGSNRSKAV 113
Query: 214 -VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
++ P Q + D E + E +VR K+F + P++V +A+EQL+ VDHDFY F
Sbjct: 114 ALQTPEEQPLIGDLTRDRAPE----LPEEVVRCKYFAISPMSVHDALEQLDLVDHDFYVF 169
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK-GN 299
N +TG++N++Y+R GGYGVI P+ GN
Sbjct: 170 ENADTGQLNVIYERNHGGYGVIQPRQGN 197
>gi|428769392|ref|YP_007161182.1| 30S ribosomal protein S30 [Cyanobacterium aponinum PCC 10605]
gi|428683671|gb|AFZ53138.1| SSU ribosomal protein S30P [Cyanobacterium aponinum PCC 10605]
Length = 192
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 128/206 (62%), Gaps = 22/206 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+E+T+++ ++VEEK+ KAV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNIEVTESIHDYVEEKLEKAVKHFQNLATKVDVHLSV-----ARNARISNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RA+E +E +YASIDLVS I R+LRK KE+ H
Sbjct: 56 AEVTVYANG-TIIRAQEHSENLYASIDLVSDKITRQLRKYKERNLAKKTHTA-------- 106
Query: 216 EPVTQVVENDA---DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
E + VE D+ + E + + +VRMK+F M P+T+ +A+EQL+ VDHDFY F
Sbjct: 107 EKTSDAVEEKTVGTDLIGDREPE--LPSEVVRMKYFAMTPMTIDQALEQLQLVDHDFYMF 164
Query: 273 RNEETGEINIVYKRKAGGYGVIIPKG 298
RNEETGEIN++Y+R GGYGVI P+
Sbjct: 165 RNEETGEINVIYQRNHGGYGVIQPRN 190
>gi|218247659|ref|YP_002373030.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8801]
gi|218168137|gb|ACK66874.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 8801]
Length = 198
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 134/208 (64%), Gaps = 17/208 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V+EK+ KAV + +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNIDVTESIHDYVQEKLEKAVKHFQSITTKVDVHLSV-----ARNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E++YASIDLVS I R+LRK KEK ++ K N +KV
Sbjct: 56 AEVTVYANG-TVIRAQEGSESLYASIDLVSDKIARQLRKYKEKLNN----KKAPNPVKVG 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E VT + D+ + + + ++RMK+F MPP+T+ EA+ QLE VDHDFY FRN+
Sbjct: 111 E-VTTATAIEGDLIGDRTPE--LPAEVIRMKYFAMPPMTIDEALHQLELVDHDFYMFRNK 167
Query: 276 ETGEINIVYKRKAGGYGVIIPKG-NGKA 302
+T EIN++Y+R GGYGVI P G NG
Sbjct: 168 DTDEINVIYQRNHGGYGVIQPHGSNGNG 195
>gi|427419888|ref|ZP_18910071.1| SSU ribosomal protein S30P [Leptolyngbya sp. PCC 7375]
gi|425762601|gb|EKV03454.1| SSU ribosomal protein S30P [Leptolyngbya sp. PCC 7375]
Length = 230
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 127/207 (61%), Gaps = 17/207 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQGKNLE+T+ ++ HV +K+ K+V ++ +VDV LSV GG K P + EV
Sbjct: 1 MKLVIQGKNLEITEAIRQHVSQKIEKSVSHFQRMINKVDVCLSVAGGT--KMPNRQYAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE--SDHGRHMKGFNRLKVRE 216
T+ + VVRAEE +E++YASIDLV+ I R+LRK KEK SDH + VR
Sbjct: 59 TVHVNR-AVVRAEESSESLYASIDLVADKICRQLRKYKEKRRSSDH---------VSVRS 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
DA++ E + ++ +VR K+F M P++V EA+E L+ +DHDFY F
Sbjct: 109 MEIDTTSQDANLHVTELLEQGQPQLPAEVVRTKYFAMAPMSVQEALENLQLIDHDFYVFY 168
Query: 274 NEETGEINIVYKRKAGGYGVIIPKGNG 300
N ET IN++Y+R GGYG+I P+ G
Sbjct: 169 NLETDRINVIYERNHGGYGLIQPRPAG 195
>gi|428772388|ref|YP_007164176.1| 30S ribosomal protein S30 [Cyanobacterium stanieri PCC 7202]
gi|428686667|gb|AFZ46527.1| SSU ribosomal protein S30P [Cyanobacterium stanieri PCC 7202]
Length = 192
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 130/211 (61%), Gaps = 30/211 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+E+TD++ N+VEEK+ KAV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNIEVTDSIHNYVEEKLEKAVKHFQNLASKVDVHLSV-----ARNARISNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RA+E++E +YASIDLVS I R+LRK KEK D H
Sbjct: 56 AEVTVYANG-TIIRAQENSENLYASIDLVSDKITRQLRKYKEKNLDKKIH---------- 104
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE-------VIVRMKFFEMPPLTVSEAIEQLENVDHD 268
PV + VE ++ + +D+ + + +VRMK+F M +++ EA EQL+ VDHD
Sbjct: 105 -PVEKTVE---AIEEKPVEDSLIGDRHVELPAEVVRMKYFAMESMSIEEAKEQLQLVDHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPKGN 299
FY FRN+ET EIN++Y R GG+GVI P+ N
Sbjct: 161 FYMFRNKETNEINVIYIRNHGGFGVIQPRAN 191
>gi|428297538|ref|YP_007135844.1| 30S ribosomal protein S30 [Calothrix sp. PCC 6303]
gi|428234082|gb|AFY99871.1| SSU ribosomal protein S30P [Calothrix sp. PCC 6303]
Length = 219
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 130/208 (62%), Gaps = 17/208 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+I GKN+E+TD ++ +V +K+ KAV L EVDV LSV + P ++ EV
Sbjct: 1 MKLVIHGKNIEITDAIREYVHQKIEKAVSHFQTLTTEVDVHLSV--ARNNRSP-VQAAEV 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ K V+RAEE +E +YASIDLV+ I R+LRK KE+ + ++ V +
Sbjct: 58 TIYANK-NVIRAEESSENLYASIDLVADKISRQLRKYKERLQNKKNNL-------VENDI 109
Query: 219 TQVVENDADVQSEEEDDNF--VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
++VVE + + ++ + E +VR K+F M P+T+SEA+E L+ V HDFY F N E
Sbjct: 110 SEVVEAEIPIVNDLIGSRTPELPEEVVRTKYFAMSPMTISEALEHLQLVGHDFYMFNNSE 169
Query: 277 TGEINIVYKRKAGGYGVIIPK----GNG 300
TGEIN++Y+R GGYGVI P+ GNG
Sbjct: 170 TGEINVIYERNHGGYGVIQPRKNTNGNG 197
>gi|452820205|gb|EME27251.1| plastid-specific ribosomal protein PSRP-1 precursor [Galdieria
sulphuraria]
Length = 280
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 146/257 (56%), Gaps = 30/257 (11%)
Query: 63 NSSFFGP--FKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLII-QGKNLELTDTVKNHVE 119
N F P + +I +R + + + + S +VKLI+ G N+ELT+ + +VE
Sbjct: 29 NVLFLKPSAYSRIVFLRGVRGRKESVSIPFSMKISEDAVKLIVVTGNNIELTEALHKYVE 88
Query: 120 EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR---RCEVTLFTKKHGVVRAEEDAET 176
EKVGKA+LK+ H V +V+V LSV P I+ EVT+F +KH V+RA E AET
Sbjct: 89 EKVGKAILKYIHFVVKVEVHLSV-----AHNPSIKLRHTSEVTVFARKH-VLRASETAET 142
Query: 177 VYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEE- 233
+YA+IDLVS I +RKL++ KE+ E HG + P T +V EEE
Sbjct: 143 MYAAIDLVSDITERKLQRYKERLHEPIHGPKTSDIAVNPI--PETDLVSRRPSRGDEEEW 200
Query: 234 --------DDNFVDEV-----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
DN +D + +V+ K F +P TV+EA+ LE +DHDFY FRN ETGE+
Sbjct: 201 KELVDKYSSDNLLDTLSPEDKVVKRKSFPVPRQTVAEAVLCLEYIDHDFYVFRNSETGEV 260
Query: 281 NIVYKRKAGGYGVIIPK 297
NIVY+R GG G+I+P+
Sbjct: 261 NIVYRRNHGGVGLIVPE 277
>gi|119483431|ref|ZP_01618845.1| light-repressed protein [Lyngbya sp. PCC 8106]
gi|119458198|gb|EAW39320.1| light-repressed protein [Lyngbya sp. PCC 8106]
Length = 212
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 128/215 (59%), Gaps = 23/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL++QGKNLE+T+ + +V +K+ KAV + L EVDV LS+ + PRI +
Sbjct: 1 MKLVVQGKNLEITEAIHEYVHQKITKAVSHYQQLTNEVDVHLSI-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK K+K H +
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKFKDKRQGKHLHPPKLAEVVEN 114
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+PV + + D + E +VR K+F MPP+ + +A+EQL+ VDHDFY F N
Sbjct: 115 QPVIEDLIGDRQPELPPE--------VVRTKYFAMPPMNLQDALEQLQLVDHDFYVFCNA 166
Query: 276 ETGEINIVYKR-KAGGYGVIIPKG-----NGKAKK 304
+TGE+N++YKR GGYG+I P+ NGKA +
Sbjct: 167 DTGELNVIYKRVNHGGYGLIQPRNNNGHTNGKAAQ 201
>gi|427714234|ref|YP_007062858.1| 30S ribosomal protein S30 [Synechococcus sp. PCC 6312]
gi|427378363|gb|AFY62315.1| SSU ribosomal protein S30P [Synechococcus sp. PCC 6312]
Length = 205
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 135/216 (62%), Gaps = 20/216 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
++L+I GKN+++TD ++++VE+K+ +A ++ +E+DV LSV + PRI +
Sbjct: 1 MQLVIHGKNIDITDAIRSYVEQKLERAAGHFQNITQEIDVHLSV-----ARNPRITTNQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ ++RAEE ++ +YAS+DLV+ + RKLRK+KEK D R ++
Sbjct: 56 AEVTIYVNG-SIIRAEESSDNLYASVDLVADKVYRKLRKLKEKRQDKSR-THEVPEIENP 113
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ V ++ + A +E +VR+K+F MP +TV A+EQLE VDHDFY FRN
Sbjct: 114 KLVPDLLGDRAPELPQE---------VVRVKYFAMPAMTVEAALEQLEMVDHDFYVFRNA 164
Query: 276 ETGEINIVYKRKAGGYGVIIPK-GNGKAKKLEPLEV 310
ETGEIN++Y+R GGYGVI P+ GN + L+V
Sbjct: 165 ETGEINVIYERNHGGYGVIQPRNGNDNHQSDSDLQV 200
>gi|443327170|ref|ZP_21055802.1| ribosomal subunit interface protein [Xenococcus sp. PCC 7305]
gi|442793201|gb|ELS02656.1| ribosomal subunit interface protein [Xenococcus sp. PCC 7305]
Length = 200
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 130/210 (61%), Gaps = 16/210 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG ++ +TD++ ++V++K+ KAV + + +VDV LSV + R+ +
Sbjct: 1 MKLLIQGNDITVTDSIHDYVQQKLEKAVRHYQSITTKVDVHLSV-----ARKHRVNDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASID+VS I R+LRK KEK+ H + +R V
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDMVSDKIARQLRKYKEKQLHKKTHAQVNSREVVE 114
Query: 216 EP-VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
EP V +VE + E + E +VR K+F MPP+T EA+E L+ +DHDFY FRN
Sbjct: 115 EPPVEDLVETNLISDRAPE----LPEEVVRTKYFTMPPMTAREALEHLQLIDHDFYMFRN 170
Query: 275 EETGEINIVYKRKAGGYGVIIPKG--NGKA 302
ET EIN++Y R GGYGVI P+ NG A
Sbjct: 171 SETNEINVIYSRNHGGYGVIQPRAETNGNA 200
>gi|428779216|ref|YP_007171002.1| ribosomal subunit interface protein [Dactylococcopsis salina PCC
8305]
gi|428693495|gb|AFZ49645.1| ribosomal subunit interface protein [Dactylococcopsis salina PCC
8305]
Length = 237
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 133/217 (61%), Gaps = 22/217 (10%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
M DG ++ +KL+IQG N+E+T+ ++N+VEEK+ AV + +VDV LSV
Sbjct: 1 MLEDG-VAKMKLLIQGNNIEVTEAIRNYVEEKLENAVKHFQQITSKVDVHLSV-----AH 54
Query: 150 GPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
R+ + EVT+ V+RA+E + +YASIDLV+ I R+LRK KEK H
Sbjct: 55 NSRVSDRTKAEVTVHANG-KVIRAQEHSGDLYASIDLVADKIARQLRKYKEK----NLHK 109
Query: 207 KGFNRLKVREPVTQ--VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLEN 264
K + K E VT V EN ++ E + E +VR+K+F MPP+++ EA EQL+
Sbjct: 110 KTHDSPKTAETVTPEPVSENLVRDRAPE-----LPEDVVRVKYFAMPPMSIEEAQEQLQL 164
Query: 265 VDHDFYGFRNEETGEINIVYKRKAGGYGVIIP-KGNG 300
VDHDFY F NEET EIN++Y+R GGYGVI P KGNG
Sbjct: 165 VDHDFYVFCNEETNEINVIYQRNHGGYGVIQPRKGNG 201
>gi|425442586|ref|ZP_18822828.1| Light repressed protein A [Microcystis aeruginosa PCC 9717]
gi|389716329|emb|CCH99433.1| Light repressed protein A [Microcystis aeruginosa PCC 9717]
Length = 199
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH H
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTHA------------ 105
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
V+ VQ + DDN + + +VRMK+F MPP+T+ EA+ QL+ VDHDFY
Sbjct: 106 --TVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|443658859|ref|ZP_21132219.1| ribosomal subunit interface protein [Microcystis aeruginosa
DIANCHI905]
gi|159027850|emb|CAO87063.1| lrtA [Microcystis aeruginosa PCC 7806]
gi|443332831|gb|ELS47418.1| ribosomal subunit interface protein [Microcystis aeruginosa
DIANCHI905]
Length = 199
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH H
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTH------------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
V+ VQ + DDN + + +VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 105 -STVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRTVNVNGK 196
>gi|159479306|ref|XP_001697734.1| plastid-specific ribosomal protein 1 [Chlamydomonas reinhardtii]
gi|158274102|gb|EDO99886.1| plastid-specific ribosomal protein 1 [Chlamydomonas reinhardtii]
Length = 286
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 142/247 (57%), Gaps = 19/247 (7%)
Query: 67 FGPFKQITVMRPTKVHTKPLPVR-MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKA 125
+GP + RP + L VR S +V++IIQG+ L +TD +K +VEEKV KA
Sbjct: 40 YGPNMAVVATRPAR---SGLVVRAQSAKAAAGTVRIIIQGRKLPVTDAIKLYVEEKVAKA 96
Query: 126 VLKHSHLVREVDVRLSVRGGEFGK-GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLV 184
V SH ++EVDV LS RGG+ G G + ++ EVT++T ++GVVR E+ +YA+IDLV
Sbjct: 97 VANFSHTLKEVDVTLSARGGDTGTHGKKEQKVEVTIYTLRNGVVRVEDAENNLYAAIDLV 156
Query: 185 SSIIQRKLRKIKEKESDHGR-----------HMKGFNR-LKVREPVTQVVENDADVQSEE 232
I+ KL+KIKEK G + F LK + TQ+ + + +Q +
Sbjct: 157 CDKIRAKLQKIKEKAISRGAWPGRAGPKEDVDEEDFQEYLKEVKMDTQLFDKEEQLQRQF 216
Query: 233 EDDNFVDEV-IVRMKFFEMP-PLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGG 290
+ N + ++R K + P+TV EAI+ LE V H FY FR T + IVYKR++GG
Sbjct: 217 AELNRIYPANVMRSKTVVLADPITVEEAIDALEAVGHSFYVFREMTTDTVQIVYKRESGG 276
Query: 291 YGVIIPK 297
YGVI+P+
Sbjct: 277 YGVIVPQ 283
>gi|434397738|ref|YP_007131742.1| sigma 54 modulation protein/ribosomal protein S30EA [Stanieria
cyanosphaera PCC 7437]
gi|428268835|gb|AFZ34776.1| sigma 54 modulation protein/ribosomal protein S30EA [Stanieria
cyanosphaera PCC 7437]
Length = 199
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 18/205 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +TD + ++V K+ KAV + ++ +VDV LSV K R+ +
Sbjct: 1 MKLLIQGNNITVTDAINDYVHNKLEKAVKHYQNITTKVDVHLSV-----AKNARVNNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASID+VS I R+LRK KEK D K K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDMVSDKIARQLRKYKEKLLDQ----KTQTATKTG 110
Query: 216 EPVTQ-VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E VT+ V ND E N V VRMK+F MPP+T+ EA++QL+ VDHDFY F N
Sbjct: 111 ELVTEGTVANDLFSDRSPELPNEV----VRMKYFSMPPMTIEEALQQLQLVDHDFYMFLN 166
Query: 275 EETGEINIVYKRKAGGYGVIIPKGN 299
++T EIN++Y R GGYGVI P+ N
Sbjct: 167 KDTNEINVIYVRNHGGYGVIQPRFN 191
>gi|113476720|ref|YP_722781.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Trichodesmium erythraeum IMS101]
gi|110167768|gb|ABG52308.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Trichodesmium erythraeum IMS101]
Length = 215
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 23/205 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+E+TD++ +V +K+ KAV L EVDV LSV + PRI +
Sbjct: 1 MKLVIQGKNIEITDSIHEYVNQKIEKAVNHFQQLTTEVDVHLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KEK K + ++
Sbjct: 56 AEVTIYANG-TVIRAQESSENLYASIDLVADKIARQLRKYKEKRQSKVNKTKTVDLIE-S 113
Query: 216 EPVTQVVEND--ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+PV + + D A++ SE +VR K+F MP +TV EA+EQL+ +DHDFY F
Sbjct: 114 QPVVENLIGDRQAELPSE----------VVRTKYFPMPSMTVEEALEQLQLIDHDFYMFS 163
Query: 274 NEETGEINIVYKR-KAGGYGVIIPK 297
N TGEIN++YKR GGYG+I P+
Sbjct: 164 NGVTGEINVIYKRYHHGGYGLIQPR 188
>gi|302855493|ref|XP_002959239.1| chloroplast-specific ribosomal protein [Volvox carteri f.
nagariensis]
gi|300255388|gb|EFJ39699.1| chloroplast-specific ribosomal protein [Volvox carteri f.
nagariensis]
Length = 289
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 135/216 (62%), Gaps = 16/216 (7%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG-KGPRIRR 155
S+V++IIQG+ L +T+ +K +VEEKV KA+ +H ++EVDV LS RGG+ G G + ++
Sbjct: 72 STVRIIIQGRKLPVTNAIKEYVEEKVAKAIQNFAHTLKEVDVTLSARGGDTGTHGKKEQK 131
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR----------- 204
+VT+FT ++GVVR E+ +YA+IDLV I+ KL ++KEK G+
Sbjct: 132 VDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTRVKEKAITKGKWPGKAGPKEDV 191
Query: 205 HMKGFNR-LKVREPVTQVVENDADVQSE--EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQ 261
+ F LK + TQ+ + +A++Q + E + N+ ++R K + P+TV EAI+
Sbjct: 192 EEEDFQEYLKDVKLETQLFDKEAELQKQFAELNRNY-PATVMRSKTVVLDPITVEEAIDA 250
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
LE V H FY FR T + +VYKR++GGYGVI+P+
Sbjct: 251 LEAVGHSFYVFREMTTDTVQVVYKRESGGYGVIVPQ 286
>gi|422301566|ref|ZP_16388933.1| Light repressed protein A [Microcystis aeruginosa PCC 9806]
gi|389789382|emb|CCI14566.1| Light repressed protein A [Microcystis aeruginosa PCC 9806]
Length = 199
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH H
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTHA------------ 105
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
V+ VQ + DDN + + +VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 106 --TVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|428201041|ref|YP_007079630.1| ribosomal subunit interface protein [Pleurocapsa sp. PCC 7327]
gi|427978473|gb|AFY76073.1| ribosomal subunit interface protein [Pleurocapsa sp. PCC 7327]
Length = 198
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 122/199 (61%), Gaps = 11/199 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEQKLEKAVKHFQGMTTKVDVHLSV--ARNARIPDKHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ D + +PV
Sbjct: 59 TVYANG-AVIRAQEGSENLYASIDLVSDKIARQLRKYKERLQDKKVASVKAGEIVEEKPV 117
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ + D + E +VRMK+F MPP+++ EA+EQL+ VDHDFY FRN +T
Sbjct: 118 SETLIGDRTPELPPE--------VVRMKYFAMPPMSIEEALEQLQLVDHDFYMFRNRDTN 169
Query: 279 EINIVYKRKAGGYGVIIPK 297
EIN++Y R GGYGVI P+
Sbjct: 170 EINVIYLRNHGGYGVIQPR 188
>gi|443323634|ref|ZP_21052638.1| ribosomal subunit interface protein [Gloeocapsa sp. PCC 73106]
gi|442786616|gb|ELR96345.1| ribosomal subunit interface protein [Gloeocapsa sp. PCC 73106]
Length = 198
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 126/208 (60%), Gaps = 21/208 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +TD + ++V++K+ +AV L +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIVVTDAIHDYVQQKLERAVKHFQALTTKVDVHLSV-----AKNDRIADKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLK 213
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KE+ E H+K +
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVADKIARQLRKYKERKLEKKTNAHVK-VTDVV 113
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
EPVT + D + E +VRMK+F MPP+T+ EA++QL+ VDHDFY FR
Sbjct: 114 TEEPVTANLIGDRTPELPAE--------VVRMKYFTMPPMTIEEALDQLQLVDHDFYMFR 165
Query: 274 NEETGEINIVYKRKAGGYGVIIPK-GNG 300
N T EIN++Y R GGYGVI P+ GN
Sbjct: 166 NSATDEINVIYMRNHGGYGVIQPRNGNN 193
>gi|428777511|ref|YP_007169298.1| 30S ribosomal protein S30 [Halothece sp. PCC 7418]
gi|428691790|gb|AFZ45084.1| SSU ribosomal protein S30P [Halothece sp. PCC 7418]
Length = 230
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 127/211 (60%), Gaps = 27/211 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR---- 154
+KL+IQG N+E+T+ ++N+V+EK+ AV + +VDV LSV P R
Sbjct: 1 MKLLIQGNNIEVTEAIRNYVQEKLENAVKHFQQITSKVDVHLSV-------APNSRVSDR 53
Query: 155 -RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
+ EVT+ V+RA+E + +YASIDLV+ I R+LRK KEK H K + K
Sbjct: 54 TKAEVTVHANG-KVIRAQEQSGDLYASIDLVADKIARQLRKYKEKH----LHKKTHDSPK 108
Query: 214 VREPVT-QVVENDA--DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
E V Q V+ D D E DD +VR+K+F MP +TV EA +QL+ VDHDFY
Sbjct: 109 TAETVAPQPVDEDLVNDRAPELPDD------VVRVKYFAMPAMTVMEAKDQLQLVDHDFY 162
Query: 271 GFRNEETGEINIVYKRKAGGYGVIIPK-GNG 300
FRNEET EIN++Y+R GGYGVI P+ GNG
Sbjct: 163 VFRNEETNEINVIYQRNHGGYGVIQPRNGNG 193
>gi|425448088|ref|ZP_18828068.1| Light repressed protein A [Microcystis aeruginosa PCC 9443]
gi|425453532|ref|ZP_18833289.1| Light repressed protein A [Microcystis aeruginosa PCC 9807]
gi|389731221|emb|CCI04705.1| Light repressed protein A [Microcystis aeruginosa PCC 9443]
gi|389802070|emb|CCI18830.1| Light repressed protein A [Microcystis aeruginosa PCC 9807]
Length = 199
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 127/213 (59%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHR--------------T 103
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
V+ VQ + DDN + + +VRMK+F MPP+T+ EA+ QL+ VDHDFY
Sbjct: 104 NATVKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|428221845|ref|YP_007106015.1| ribosomal subunit interface protein [Synechococcus sp. PCC 7502]
gi|427995185|gb|AFY73880.1| ribosomal subunit interface protein [Synechococcus sp. PCC 7502]
Length = 190
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 126/211 (59%), Gaps = 35/211 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+K+IIQGKN+E+TD ++ +V++K+ +AV + VDV LSV + PRI +
Sbjct: 1 MKIIIQGKNIEITDAIREYVDQKIERAVNHFKSITTAVDVNLSV-----ARNPRIISSQS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E++YASIDLV+ I RKLRK KE+++
Sbjct: 56 AEVTIYANG-AVIRAEERSESLYASIDLVADKIARKLRKFKERKT--------------- 99
Query: 216 EPVTQVVENDADVQSEEE-----DDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDH 267
+V A +E+ D N V E+ ++R K+F M P+TV EA+E+LE VDH
Sbjct: 100 ---AKVAPKTALAVTEQPPIPLPDQNRVPELPAQVIRNKYFAMLPMTVEEAVERLEMVDH 156
Query: 268 DFYGFRNEETGEINIVYKRKAGGYGVIIPKG 298
DF+ FRN T EIN+VY+R GGYGVI P G
Sbjct: 157 DFFVFRNVATDEINVVYERNHGGYGVIQPHG 187
>gi|172035072|ref|YP_001801573.1| light repressed protein [Cyanothece sp. ATCC 51142]
gi|171696526|gb|ACB49507.1| light repressed protein [Cyanothece sp. ATCC 51142]
Length = 201
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 127/209 (60%), Gaps = 28/209 (13%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---R 154
S+KL+IQG N+++T+++ ++V +K+ KAV + L +VDV LSV K RI
Sbjct: 2 SMKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTLTTKVDVHLSV-----AKNARITNKH 56
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
+ EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK ++H
Sbjct: 57 KAEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNH------------ 103
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEV------IVRMKFFEMPPLTVSEAIEQLENVDHD 268
+P + V + + E E D D ++RMK+F MPP+++ EA QLE VDHD
Sbjct: 104 -KPQSSVKNPEVLPEREIEKDLIGDREAALPPEVIRMKYFAMPPMSIEEAKHQLELVDHD 162
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY FRN++T EIN++Y R GG+GVI P+
Sbjct: 163 FYMFRNQDTDEINVIYMRNHGGFGVIQPR 191
>gi|425435960|ref|ZP_18816403.1| Light repressed protein A [Microcystis aeruginosa PCC 9432]
gi|425450636|ref|ZP_18830460.1| Light repressed protein A [Microcystis aeruginosa PCC 7941]
gi|425460419|ref|ZP_18839900.1| Light repressed protein A [Microcystis aeruginosa PCC 9808]
gi|440753929|ref|ZP_20933131.1| ribosome-associated protein Y [Microcystis aeruginosa TAIHU98]
gi|389679407|emb|CCH91797.1| Light repressed protein A [Microcystis aeruginosa PCC 9432]
gi|389768434|emb|CCI06456.1| Light repressed protein A [Microcystis aeruginosa PCC 7941]
gi|389826859|emb|CCI22281.1| Light repressed protein A [Microcystis aeruginosa PCC 9808]
gi|440174135|gb|ELP53504.1| ribosome-associated protein Y [Microcystis aeruginosa TAIHU98]
Length = 199
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 129/213 (60%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH R
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDH------------RTNA 105
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
T V+ VQ + DDN + + +VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 106 T--VKTSEVVQEKPLDDNLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNVNGK 196
>gi|126658526|ref|ZP_01729674.1| light repressed protein [Cyanothece sp. CCY0110]
gi|126620268|gb|EAZ90989.1| light repressed protein [Cyanothece sp. CCY0110]
Length = 199
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 129/208 (62%), Gaps = 28/208 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V +K+ KAV + +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTFTTKVDVHLSV-----AKNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK ++H
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNH------------- 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVD-EV-----IVRMKFFEMPPLTVSEAIEQLENVDHDF 269
+P + V D ++E ++D D EV ++RMK+F MPP+++ EA QLE VDHDF
Sbjct: 102 KPQSSVKSPDVLPETEVKEDLIGDREVELPPEVIRMKYFAMPPMSIEEAKHQLELVDHDF 161
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIPK 297
Y FRN++T EIN++Y R GG+GVI P+
Sbjct: 162 YMFRNQDTDEINVIYMRNHGGFGVIQPR 189
>gi|354551920|ref|ZP_08971228.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
ATCC 51472]
gi|353555242|gb|EHC24630.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
ATCC 51472]
Length = 199
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 126/208 (60%), Gaps = 28/208 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V +K+ KAV + L +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIDVTESINDYVTQKLEKAVKHYQTLTTKVDVHLSV-----AKNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK ++H
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKINNH------------- 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV------IVRMKFFEMPPLTVSEAIEQLENVDHDF 269
+P + V + + E E D D ++RMK+F MPP+++ EA QLE VDHDF
Sbjct: 102 KPQSSVKNPEVLPEREIEKDLIGDREAALPPEVIRMKYFAMPPMSIEEAKHQLELVDHDF 161
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIPK 297
Y FRN++T EIN++Y R GG+GVI P+
Sbjct: 162 YMFRNQDTDEINVIYMRNHGGFGVIQPR 189
>gi|81301161|ref|YP_401369.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Synechococcus elongatus PCC 7942]
gi|81170042|gb|ABB58382.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Synechococcus elongatus PCC 7942]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 129/208 (62%), Gaps = 13/208 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL++QG N+++T + ++V++K+ KAV + + E+DV LSV PR + EV
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLSV-AKHAKSNPR-QTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RAEE E +YASIDLVS I R+L+K KEK D KG +L E
Sbjct: 59 TIYANG-TVIRAEECNENLYASIDLVSDKITRQLKKYKEKLRDR----KG--QLSTAETA 111
Query: 219 TQVVEND--ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
Q+ + D+ + + + + + IVR K+F MP +TV +A+ QL+ VDHDFY FRN
Sbjct: 112 DQLSDGALVTDLLNGRQPE--LPQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYMFRNAA 169
Query: 277 TGEINIVYKRKAGGYGVIIPKGNGKAKK 304
TGEIN++Y+R GGYGVI P+ G ++K
Sbjct: 170 TGEINVIYERNHGGYGVIQPRPEGNSEK 197
>gi|218441096|ref|YP_002379425.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7424]
gi|218173824|gb|ACK72557.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7424]
Length = 199
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 30/209 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR---R 155
+KL+IQG N+ +T+ + ++V++K+ KAV L +VDV LSV K RI+ +
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQQKLEKAVKHFQTLTTKVDVHLSV-----AKNARIQNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KE++ + H
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERKLEQNAHSP-------- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHD 268
V+ VQ E ++N + + +VRMK+F MPP+++ EA+EQL+ VDHD
Sbjct: 107 ------VKAGEVVQQETIEENLIGDRQPELPPEVVRMKYFGMPPMSIDEALEQLQLVDHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
F+ FRN +T EIN++Y R GG+GVI P+
Sbjct: 161 FFMFRNRDTNEINVIYIRNHGGFGVIQPR 189
>gi|166363884|ref|YP_001656157.1| light repressed protein A-like protein [Microcystis aeruginosa
NIES-843]
gi|425467679|ref|ZP_18846958.1| Light repressed protein A [Microcystis aeruginosa PCC 9809]
gi|166086257|dbj|BAG00965.1| light repressed protein A homolog [Microcystis aeruginosa NIES-843]
gi|389829489|emb|CCI29154.1| Light repressed protein A [Microcystis aeruginosa PCC 9809]
Length = 199
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P R EV
Sbjct: 1 MKLLIQGNNIAVTEPIHDYVEQKLEKAVKHFNGITTKVDVHLSVEKN--ARIPDRHRAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH + PV
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDH----------RTNAPV 107
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ VQ + D + + + +VRMK+F MPP+T+ EA+ QL+ VDHDFY
Sbjct: 108 ----KTSEVVQEKPLDGSLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFYM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNLNGK 196
>gi|148242897|ref|YP_001228054.1| light repressed protein A-like protein [Synechococcus sp. RCC307]
gi|147851207|emb|CAK28701.1| Light repressed protein A homolog [Synechococcus sp. RCC307]
Length = 187
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 125/198 (63%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ E K+ +AV + +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTPALRDYTETKLSRAVSHFNGMVQEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVTLF V+RA+E ++ +YASIDLV+ + R+L++ K++ HG H + L+ E
Sbjct: 56 EVTLFASG-TVIRAQERSQNLYASIDLVAGKLARQLQRHKDRRQGHGHH----SDLQA-E 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P ++ D +Q + + +VR K+F MPP++V EAI QLE +DHDFY FRN +
Sbjct: 110 PEVMPLQGDM-LQGRHAE---LPAPVVRRKYFAMPPMSVEEAIHQLEVIDHDFYVFRNAD 165
Query: 277 TGEINIVYKRKAGGYGVI 294
GE+ +VY+R GGYGVI
Sbjct: 166 NGELQVVYQRNHGGYGVI 183
>gi|67920272|ref|ZP_00513792.1| Sigma 54 modulation protein/ribosomal protein S30EA [Crocosphaera
watsonii WH 8501]
gi|416375761|ref|ZP_11683392.1| Ribosomal subunit interface protein [Crocosphaera watsonii WH 0003]
gi|67857756|gb|EAM52995.1| Sigma 54 modulation protein/ribosomal protein S30EA [Crocosphaera
watsonii WH 8501]
gi|357266475|gb|EHJ15096.1| Ribosomal subunit interface protein [Crocosphaera watsonii WH 0003]
Length = 199
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/203 (42%), Positives = 127/203 (62%), Gaps = 18/203 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+++T+++ ++V++K+ KAV + +VDV LSV K RI +
Sbjct: 1 MKLLIQGNNIDVTESINDYVKQKLEKAVKHYQTFTTKVDVHLSV-----AKNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK S+H +L
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKISRQLRKYKEKVSNHKPQSSA--KLPEV 112
Query: 216 EPVTQVVEN-DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P +V E+ D Q+E + ++RMK+F MP +++ EA QLE VDHDFY FRN
Sbjct: 113 LPEKEVSEDLIGDRQAE------LPPEVIRMKYFAMPSMSIEEAKHQLELVDHDFYMFRN 166
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
+ET EIN++Y R GG+G+I P+
Sbjct: 167 QETEEINVIYMRNHGGFGIIQPR 189
>gi|87125605|ref|ZP_01081450.1| light repressed protein A-like protein [Synechococcus sp. RS9917]
gi|86166905|gb|EAQ68167.1| light repressed protein A-like protein [Synechococcus sp. RS9917]
Length = 195
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 123/200 (61%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT ++++ + K+ +AV +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLELTPALRDYTQSKLERAVQHFDDMVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDH H G +
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLCRQLRRFKERHSDH-HHSNGHRASET-- 111
Query: 217 PVTQVVENDADVQSEEEDDNFVD--EVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T + + A + D V + VR K+F MPP+++ EA QL+ +DHDFY FR+
Sbjct: 112 PPTDAIADAAPIDGSLLDGKEVQLPDPGVRRKYFAMPPMSLEEARHQLDVIDHDFYLFRD 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
TG++ ++Y+R GGYGVI
Sbjct: 172 ASTGDLQVIYRRNHGGYGVI 191
>gi|56751760|ref|YP_172461.1| light repressed protein A-like protein [Synechococcus elongatus PCC
6301]
gi|56686719|dbj|BAD79941.1| light repressed protein A homolog [Synechococcus elongatus PCC
6301]
Length = 207
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 129/208 (62%), Gaps = 13/208 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL++QG N+++T + ++V++K+ KAV + + E+DV LSV PR + EV
Sbjct: 1 MKLVVQGTNIDVTAAIHDYVQQKLDKAVSHYQSFLTEIDVHLSV-AKHAKSNPR-QTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RAEE E +YASIDLVS I R+L+K KE+ D KG +L E
Sbjct: 59 TIYANG-TVIRAEECNENLYASIDLVSDKITRQLKKYKEELRDR----KG--QLSTAETA 111
Query: 219 TQVVEND--ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
Q+ + D+ + + + + + IVR K+F MP +TV +A+ QL+ VDHDFY FRN
Sbjct: 112 DQLSDGALVTDLLNGRQPE--LPQDIVRTKYFAMPAMTVEDALAQLQLVDHDFYMFRNAA 169
Query: 277 TGEINIVYKRKAGGYGVIIPKGNGKAKK 304
TGEIN++Y+R GGYGVI P+ G ++K
Sbjct: 170 TGEINVIYERNHGGYGVIQPRPEGNSEK 197
>gi|16331216|ref|NP_441944.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|383322959|ref|YP_005383812.1| light repressed protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383326128|ref|YP_005386981.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383492012|ref|YP_005409688.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437280|ref|YP_005652004.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|451815372|ref|YP_007451824.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|2500503|sp|P74518.1|LRTA_SYNY3 RecName: Full=Light-repressed protein A homolog
gi|1653710|dbj|BAA18622.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|339274312|dbj|BAK50799.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|359272278|dbj|BAL29797.1| light repressed protein [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275448|dbj|BAL32966.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278618|dbj|BAL36135.1| light repressed protein [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407961407|dbj|BAM54647.1| light repressed protein [Synechocystis sp. PCC 6803]
gi|451781341|gb|AGF52310.1| light repressed protein [Synechocystis sp. PCC 6803]
Length = 191
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 21/203 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+ + ++VEEKV +AV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KE+ D K +K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTS 109
Query: 216 EPVTQ--VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
E V V EN ++ E + ++RMK+F MPP+ + +A+EQL+ VDHDFY FR
Sbjct: 110 EIVEDKPVEENLIGDRAPE-----LPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFR 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N++T EIN++Y R GGYGVI P
Sbjct: 165 NKDTDEINVIYIRNHGGYGVIQP 187
>gi|390441883|ref|ZP_10229911.1| Light repressed protein A homolog [Microcystis sp. T1-4]
gi|389834781|emb|CCI34037.1| Light repressed protein A homolog [Microcystis sp. T1-4]
Length = 199
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 127/213 (59%), Gaps = 27/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGMTTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHR--------------T 103
Query: 219 TQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
V+ VQ + +D+ + + +VRMK+F MPP+T+ EA+ QL+ VDHDF+
Sbjct: 104 NATVKTSEVVQEKPLEDSLIGDRTPELPAEVVRMKYFAMPPMTIEEALTQLQLVDHDFFM 163
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG---NGK 301
F N++T EIN++Y+R GG+GVI P+ NGK
Sbjct: 164 FCNKDTNEINVIYQRNHGGFGVIQPRPVNVNGK 196
>gi|307151678|ref|YP_003887062.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7822]
gi|306981906|gb|ADN13787.1| sigma 54 modulation protein/ribosomal protein S30EA [Cyanothece sp.
PCC 7822]
Length = 199
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 126/202 (62%), Gaps = 16/202 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++V+EK+ KAV + +VDV LSV + G+ + EV
Sbjct: 1 MKLLIQGNNITVTEAIHDYVQEKLEKAVKHFQAITTKVDVHLSV--AKNGRVQNKHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ + K ++ +K + V
Sbjct: 59 TVYANG-AVIRAQEGSENLYASIDLVSDKIARQLRKYKERRLEQ----KAYSPVKTGDVV 113
Query: 219 T-QVVEND--ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
Q VE + D Q E + +VRMK+F MP +++ EA+EQL+ VDHDFY FRN
Sbjct: 114 QDQPVEGNLIGDRQPELPPE------VVRMKYFAMPLMSIEEALEQLQLVDHDFYMFRNR 167
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
T EIN++Y R GGYGVI P+
Sbjct: 168 NTNEINVIYIRNHGGYGVIQPR 189
>gi|427414860|ref|ZP_18905047.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
gi|425755513|gb|EKU96378.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
Length = 195
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 123/201 (61%), Gaps = 14/201 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +IQGK+L++TD + ++V +K+GKA+ +H + +VDV+LS K P +R EV
Sbjct: 1 MRWVIQGKDLKVTDAINDYVRQKIGKALARHEDIATKVDVKLS--APLQIKKPSQQRAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ V+RA E E +YASIDLV+ + R+L+K K K+ R + RE +
Sbjct: 59 TVHASG-TVIRAAEKHENLYASIDLVTDKLIRQLQKYKTKKQ---------RRAQPRESL 108
Query: 219 TQVVENDADVQSEEEDDNF--VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ + + + E D + +VR KFF MPP++V EA++ L+ VDHDFY FRN +
Sbjct: 109 SNDLNQSLETTALESSDRSPELPPKVVRNKFFMMPPISVEEALDNLQLVDHDFYMFRNAQ 168
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T EIN++Y+R GGYGVI P+
Sbjct: 169 TDEINVIYERNHGGYGVIQPR 189
>gi|434384831|ref|YP_007095442.1| ribosomal subunit interface protein [Chamaesiphon minutus PCC 6605]
gi|428015821|gb|AFY91915.1| ribosomal subunit interface protein [Chamaesiphon minutus PCC 6605]
Length = 213
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 28/209 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL++Q KN+E+TD ++++V +K+ KAV + E+D+ LSV K PRI +
Sbjct: 1 MKLVLQSKNIEITDAIRDYVNQKIEKAVSHFEQITTEIDINLSV-----AKNPRIAAAQV 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RAEE +E +YASIDLV+ I RKLRK KE+ F +
Sbjct: 56 AEVTIYVNG-AVIRAEEASEHLYASIDLVADKISRKLRKYKER---------NFTKKDRT 105
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVDHD 268
E + + E ++ E D N D +VR K+F + LT+ EA+ QL+ VDHD
Sbjct: 106 EGLKDIGE---ELDLELLDYNLTDNRSATLPAEVVRTKYFALSALTIEEAMAQLQLVDHD 162
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY +R+ ETGE+N+VY+R GG+GVI P+
Sbjct: 163 FYVYRSVETGEVNVVYRRNHGGFGVIQPR 191
>gi|124023834|ref|YP_001018141.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9303]
gi|123964120|gb|ABM78876.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9303]
Length = 195
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT ++ + + K+ +A+ +V+E DV LSV + P + +
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSV-----ARNPSVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDH H G
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDH-HHSPGHRASST-- 111
Query: 217 PVTQVVENDADVQSEEED--DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V ++A + D + + VR K+F MPP++V +A QL+ +DHDFY FR
Sbjct: 112 PTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLDLIDHDFYLFRE 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
+E+G++ ++Y+R GGYGVI
Sbjct: 172 QESGQLQVIYRRNHGGYGVI 191
>gi|425472371|ref|ZP_18851222.1| Light repressed protein A homolog [Microcystis aeruginosa PCC 9701]
gi|389881562|emb|CCI37899.1| Light repressed protein A homolog [Microcystis aeruginosa PCC 9701]
Length = 199
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 127/207 (61%), Gaps = 15/207 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+ + ++VE+K+ KAV + + +VDV LSV + P + EV
Sbjct: 1 MKLLIQGNNIAVTEAIHDYVEQKLEKAVKHFNGMTTKVDVHLSVEKN--ARIPDRHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE-P 217
T++ V+RA+E +E +YASIDLVS I R+LRK KE+ DH + V+E P
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKERLVDHRTNSTVKTSEVVQEKP 117
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + D + E +VRMK+F MPP+T+ EA+ QL+ VDHDF+ F N++T
Sbjct: 118 LEGSLIGDRTPELPAE--------VVRMKYFAMPPMTIEEALTQLQLVDHDFFMFCNKDT 169
Query: 278 GEINIVYKRKAGGYGVIIPKG---NGK 301
EIN++Y+R GG+GVI P+ NGK
Sbjct: 170 NEINVIYQRNHGGFGVIQPRPVNVNGK 196
>gi|33862486|ref|NP_894046.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9313]
gi|33640599|emb|CAE20388.1| light repressed protein A homolog [Prochlorococcus marinus str. MIT
9313]
Length = 195
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 123/200 (61%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT ++ + + K+ +A+ +V+E DV LSV + P + +
Sbjct: 1 MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSV-----ARNPSVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDH H G
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDH-HHSPGHRASST-- 111
Query: 217 PVTQVVENDADVQSEEED--DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V ++A + D + + VR K+F MPP++V +A QL+ +DHDFY FR
Sbjct: 112 PTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARYQLDLIDHDFYLFRE 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
+E+G++ ++Y+R GGYGVI
Sbjct: 172 QESGQLQVIYRRNHGGYGVI 191
>gi|170076891|ref|YP_001733529.1| light-repressed protein LrtA [Synechococcus sp. PCC 7002]
gi|190358896|sp|P47908.2|LRTA_SYNP2 RecName: Full=Light-repressed protein A; AltName:
Full=Dark-response protein 21; Short=DRP-21
gi|169884560|gb|ACA98273.1| light-repressed protein LrtA (ribosomal subunit interface protein)
[Synechococcus sp. PCC 7002]
Length = 193
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 30/209 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+++ ++VE K+ KA +VDV LSV RI +
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSV-----ANNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK H V+
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQ 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE-------VIVRMKFFEMPPLTVSEAIEQLENVDHD 268
E ++V+ D DN + + +VRMK+F MPP+T+ EA+EQL+ VDHD
Sbjct: 107 EKTSEVLPEDP------VPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY F N++T IN++Y R GGYGVI P+
Sbjct: 161 FYMFLNKDTNAINVIYIRNHGGYGVIQPR 189
>gi|688435|gb|AAA62586.1| light repressed protein [Synechococcus sp.]
Length = 192
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 118/202 (58%), Gaps = 17/202 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+++ ++VE K+ KA +VDV LSV RI +
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSV-----ANNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK H V+
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQ 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E ++V+ D + +VRMK+F MPP+T+ +A+EQL+ VDHDFY F N+
Sbjct: 107 EKTSEVLPEDPVPDNSLRSRPRASSEVVRMKYFAMPPMTIDQALEQLQLVDHDFYMFLNK 166
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+T IN++Y R GGYGVI P+
Sbjct: 167 DTNAINVIYIRNHGGYGVIQPR 188
>gi|318042189|ref|ZP_07974145.1| ribosomal subunit interface protein [Synechococcus sp. CB0101]
Length = 195
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 125/203 (61%), Gaps = 11/203 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ E+K+ +A+ +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTPAIRDYTEDKLKRAIGHFDGMVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+ + R+LR+ K++ DH H +
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVAGKLTRQLRRYKDRHDDH--HHSPGHHATTTP 112
Query: 217 PVTQVVENDADVQSE-EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ ++ DA +S E + + VR K+F MPP+++ +A+ QLE +DHDFY FR+
Sbjct: 113 SLAELPGQDAVSESLLEGKEATLPSPGVRRKYFAMPPMSIDDALHQLELIDHDFYLFRDA 172
Query: 276 ETGEINIVYKRKAGGYGVIIPKG 298
+GE+ +VY+R GG+GVI KG
Sbjct: 173 SSGELQVVYRRNHGGFGVIQAKG 195
>gi|352096363|ref|ZP_08957243.1| sigma 54 modulation protein/ribosomal protein S30EA [Synechococcus
sp. WH 8016]
gi|351677057|gb|EHA60208.1| sigma 54 modulation protein/ribosomal protein S30EA [Synechococcus
sp. WH 8016]
Length = 191
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 120/205 (58%), Gaps = 27/205 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++ + E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALREYTETKLERAIHHFDDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDHG
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRFKERHSDHGHR----------- 103
Query: 217 PVTQVVENDADVQSEEEDDNFVD-------EVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
T ND + +D+ ++ +R K+F MP +++ EA QLE +DHDF
Sbjct: 104 -TTPTAANDVLLTERPTEDSLLEGKEAQLPSPGIRRKYFAMPAMSLEEARHQLEMIDHDF 162
Query: 270 YGFRNEETGEINIVYKRKAGGYGVI 294
Y FR++E+GE+ ++Y R GG+GVI
Sbjct: 163 YLFRDKESGELQVIYHRNHGGFGVI 187
>gi|113954524|ref|YP_729824.1| ribosomal subunit interface protein [Synechococcus sp. CC9311]
gi|113881875|gb|ABI46833.1| ribosomal subunit interface protein [Synechococcus sp. CC9311]
Length = 191
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 120/205 (58%), Gaps = 27/205 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++ + E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALREYTETKLERAIHHFDDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ KE+ SDHG
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRFKERHSDHGHR----------- 103
Query: 217 PVTQVVENDADVQSEEEDDNFVD-------EVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
T ND + +D+ ++ VR K+F MP +++ EA QLE +DHDF
Sbjct: 104 -TTPTAANDVLLTERPTEDSLLEGKEAQLPSPGVRRKYFAMPAMSLEEARHQLELIDHDF 162
Query: 270 YGFRNEETGEINIVYKRKAGGYGVI 294
Y FR++E+GE+ ++Y R GG+GVI
Sbjct: 163 YLFRDKESGELQVIYHRNHGGFGVI 187
>gi|33860957|ref|NP_892518.1| light repressed protein A-like protein [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33639689|emb|CAE18859.1| light repressed protein A homolog [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 194
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 125/202 (61%), Gaps = 17/202 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGPLKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F ++RAEE E +Y+SIDLVS+ + RKLRK KE+ H + + N +K +
Sbjct: 56 EVTIFANG-TIIRAEEKTENLYSSIDLVSNKLCRKLRKYKER---HNKKLHN-NLVKNKN 110
Query: 217 PVTQVVEN----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+ +E D D+ +EE + + E ++ K+FEM P+++ EA +QL+ +DHDFY F
Sbjct: 111 SYSNAIEESDSIDKDIFNEEREVR-LPEPSIKKKYFEMIPISLEEARKQLDFIDHDFYLF 169
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
RN+ E+ ++YKR GGYG+I
Sbjct: 170 RNKLNNELQVIYKRNHGGYGLI 191
>gi|123967988|ref|YP_001008846.1| light repressed protein A [Prochlorococcus marinus str. AS9601]
gi|123198098|gb|ABM69739.1| light repressed protein A [Prochlorococcus marinus str. AS9601]
Length = 194
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 15/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H + K + L
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSL-- 112
Query: 215 REPVTQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
P+ + N D +E + + E ++ K+FEM P++ EA +QL+ +DHDFY FR
Sbjct: 113 --PIESMESNFLDKALFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFR 170
Query: 274 NEETGEINIVYKRKAGGYGVI 294
N++ E+ ++YKR GGYG+I
Sbjct: 171 NKKNNELQVIYKRNHGGYGLI 191
>gi|126695758|ref|YP_001090644.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9301]
gi|126542801|gb|ABO17043.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9301]
Length = 194
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 15/201 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H + K + L
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSL-- 112
Query: 215 REPVTQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
P+ + N D +E + + E ++ K+FEM P++ EA +QL+ +DHDFY FR
Sbjct: 113 --PIESMESNFLDKAFFKEGTEASLPEPSIKNKYFEMTPISSDEARKQLDLIDHDFYVFR 170
Query: 274 NEETGEINIVYKRKAGGYGVI 294
N++ E+ ++YKR GGYG+I
Sbjct: 171 NKKNNELQVIYKRNHGGYGLI 191
>gi|123965697|ref|YP_001010778.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9515]
gi|123200063|gb|ABM71671.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9515]
Length = 194
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 126/204 (61%), Gaps = 21/204 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKN+ELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNIELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRLSYQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG--FNRLKV 214
EVT+F ++RAEE E +Y+SIDLVS+ + RKLRK KE RH K +N K
Sbjct: 56 EVTIFASG-TIIRAEEKTENLYSSIDLVSNKLCRKLRKYKE------RHYKNLNYNLEKN 108
Query: 215 REPVTQVVEN----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
+ T E+ D ++ +++ + + E ++ K+FEM P+++ EA +QL+ +DHDFY
Sbjct: 109 KHSFTNTNEHLDSIDKNIFNDKREAK-LPEPSIKNKYFEMIPISLEEARKQLDLIDHDFY 167
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
FRN++ E+ ++YKRK GGYG+I
Sbjct: 168 VFRNKKNNELQVIYKRKHGGYGLI 191
>gi|72383571|ref|YP_292926.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Prochlorococcus marinus str. NATL2A]
gi|72003421|gb|AAZ59223.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Prochlorococcus marinus str. NATL2A]
Length = 194
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 26/209 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT +++++ + K+ KA +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLELTQSLRDYTKTKIDKATHNFQEMVQEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+LRK KE+ + H H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVH---------HN 105
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVI--------VRMKFFEMPPLTVSEAIEQLENVDHD 268
T+ V+N+ D Q+ D+ + E VR K+FEM P+ + +A QL+ +DHD
Sbjct: 106 QSTKSVQNE-DTQNFSSSDHSLTEGKEPHLPSPGVRRKYFEMTPMNIEQARVQLDLIDHD 164
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY FR EE + ++YKR GGYGVI K
Sbjct: 165 FYLFREEEGSALRVIYKRNHGGYGVIQEK 193
>gi|427722874|ref|YP_007070151.1| 30S ribosomal protein S30 [Leptolyngbya sp. PCC 7376]
gi|427354594|gb|AFY37317.1| SSU ribosomal protein S30P [Leptolyngbya sp. PCC 7376]
Length = 193
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/200 (41%), Positives = 121/200 (60%), Gaps = 12/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL+IQG N+ +T+++ ++VE K+ KA L +VDV LSV + + EV
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTLATKVDVHLSVANN--ARVNSTHKAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG-FNRLKVREP 217
T++ V+RA+E +E +YASIDLVS I R+LRK KEK+ H++ L EP
Sbjct: 59 TVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKKFGKKTHIQDKTAELLPPEP 117
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + + D + E +VRMK+F MPP+ + EA+EQL+ VDHDFY F N+E+
Sbjct: 118 IPENLIGDRAPELPAE--------VVRMKYFAMPPMAIDEALEQLQLVDHDFYMFLNKES 169
Query: 278 GEINIVYKRKAGGYGVIIPK 297
EIN++Y R GG+GVI P+
Sbjct: 170 NEINVIYTRNHGGFGVIQPR 189
>gi|91069975|gb|ABE10903.1| light repressed protein A-like protein [uncultured Prochlorococcus
marinus clone ASNC2259]
Length = 194
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 120/213 (56%), Gaps = 39/213 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H + K + L +
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNKQFKNKDSLPI 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVI-------------VRMKFFEMPPLTVSEAIEQ 261
E + NF+D+ ++ K+FEM P++ EA +Q
Sbjct: 115 ----------------ESMESNFLDKAFFIEGTEASLPKPSIKNKYFEMTPISSDEARKQ 158
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
L+ +DHDFY FRN++ E+ ++YKR GGYG+I
Sbjct: 159 LDLIDHDFYVFRNKKNNELQVIYKRNHGGYGLI 191
>gi|427416462|ref|ZP_18906645.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
gi|425759175|gb|EKV00028.1| ribosomal subunit interface protein [Leptolyngbya sp. PCC 7375]
Length = 206
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 118/205 (57%), Gaps = 25/205 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +IQGKN+++T+ + ++ +K+ KAV L+ ++D+ LS+ + + EV
Sbjct: 1 MQTVIQGKNVDITNAINDYAHQKINKAVHHFEGLLTKIDITLSIHNN--ARKQDQQTAEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TLF K V+RA + +Y +IDLV+ I R+L+K KEK+ R PV
Sbjct: 59 TLFAKG-AVIRAVKKHSDLYTAIDLVTDKITRQLKKYKEKQQQ-------------RIPV 104
Query: 219 TQVVENDADVQSEEEDDNFVDE-------VIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ V D ++ ++E ++VR KFF MPP+++ A+EQLE +DHDFY
Sbjct: 105 STV--QDDGLEPSINPTTIINEQSPTLPPMVVRNKFFAMPPMSIQAALEQLELIDHDFYM 162
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
F+N TGEIN++Y+R GGYG+I P
Sbjct: 163 FQNSSTGEINVLYERNHGGYGLIQP 187
>gi|254526036|ref|ZP_05138088.1| light repressed protein A [Prochlorococcus marinus str. MIT 9202]
gi|221537460|gb|EEE39913.1| light repressed protein A [Prochlorococcus marinus str. MIT 9202]
Length = 194
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 125/213 (58%), Gaps = 33/213 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF--NRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE R+ K F N+ K
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKE------RNNKIFHNNQFKN 108
Query: 215 RE--PVTQVVENDADVQSEEEDDNFVDEVI--------VRMKFFEMPPLTVSEAIEQLEN 264
+E P+ AD +S D+ + + I ++ K+FEM P++ EA +QL+
Sbjct: 109 KESFPI-------ADTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQLDL 161
Query: 265 VDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
+DHDFY FRN + E+ ++YKR GGYG+I K
Sbjct: 162 IDHDFYVFRNSKNNELQVIYKRNHGGYGLIQSK 194
>gi|157412813|ref|YP_001483679.1| ribosome-associated protein Y [Prochlorococcus marinus str. MIT
9215]
gi|157387388|gb|ABV50093.1| Ribosome-associated protein Y [Prochlorococcus marinus str. MIT
9215]
Length = 194
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 124/209 (59%), Gaps = 25/209 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE R+ K F+ + +
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKE------RNNKIFHNNQFKN 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVI--------VRMKFFEMPPLTVSEAIEQLENVDHD 268
+ ++ AD +S D+ + + I ++ K+FEM P++ EA +QL+ +DHD
Sbjct: 109 KESFLI---ADTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQLDLIDHD 165
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY FRN + E+ ++YKR GGYG+I K
Sbjct: 166 FYVFRNNKNNELQVIYKRNHGGYGLIQSK 194
>gi|124025165|ref|YP_001014281.1| light repressed protein A-like protein [Prochlorococcus marinus
str. NATL1A]
gi|123960233|gb|ABM75016.1| light repressed protein A-like protein [Prochlorococcus marinus
str. NATL1A]
Length = 194
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 121/203 (59%), Gaps = 14/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLELT +++++ + K+ KA +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLELTPSLRDYTKTKIDKATHNFQEMVQEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+LRK KE+ + H H N +
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVANKLARQLRKYKERHNSHNVH----NNQSTKS 110
Query: 217 PVTQVVEN--DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ +EN +D E + + VR K+FEM P+T+ +A QL+ +DHDFY FR
Sbjct: 111 VQNEKIENFSSSDHSLIEGKEPHLPNPGVRRKYFEMDPMTIEQARVQLDLIDHDFYLFRE 170
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
EE + ++Y+R GGYGVI K
Sbjct: 171 EEGSALRVIYRRNHGGYGVIQEK 193
>gi|254431542|ref|ZP_05045245.1| light repressed protein [Cyanobium sp. PCC 7001]
gi|197625995|gb|EDY38554.1| light repressed protein [Cyanobium sp. PCC 7001]
Length = 195
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 117/201 (58%), Gaps = 10/201 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--C 156
+KL+I G+NLE+T ++ + E K+ +A+ +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTPAIREYTETKLTRAITHFEGMVKEADVHLSV-----ARNPRVPQQIA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E ++ +YASIDLV+S + R+L + KE+ H RH +R E
Sbjct: 56 EVTMFANG-TVIRAQEHSDNLYASIDLVASKLTRQLNRYKERV--HERHQGPVHRSARDE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ + + VR K+F MPP+++ EA+ QLE +DHDFY FR E
Sbjct: 113 EAGAASLPPPGSSLTDGKEPELPSRGVRRKYFAMPPMSLDEALHQLELIDHDFYVFREAE 172
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
+G+I +VY R GG+GVI PK
Sbjct: 173 SGQIQVVYHRNHGGFGVIQPK 193
>gi|91070329|gb|ABE11246.1| light repressed protein A [uncultured Prochlorococcus marinus clone
HF10-88F10]
Length = 194
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 119/216 (55%), Gaps = 39/216 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + E K+ KA + +V+E D+ LS+ K PR+ +
Sbjct: 1 MKILIHGKNLELTGALKEYTEAKIEKATHHYKDIVKEADIHLSIE-----KNPRVSFQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ + H K
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNNKTIHNNQFK------- 107
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVI-------------VRMKFFEMPPLTVSEAIEQ 261
N SE + F+DE + ++ K+FEM P++ EA +Q
Sbjct: 108 ---------NKESFPSENTESRFLDEALLKDGIEASLPEPSIKNKYFEMNPISSEEARKQ 158
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
L+ +DHDFY FRN++ ++ ++YKR GGYG+I K
Sbjct: 159 LDLIDHDFYVFRNKKNNQLQVIYKRNHGGYGLIQSK 194
>gi|37520355|ref|NP_923732.1| light-repressed protein LrtA-like protein [Gloeobacter violaceus
PCC 7421]
gi|35211348|dbj|BAC88727.1| glr0786 [Gloeobacter violaceus PCC 7421]
Length = 187
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 116/204 (56%), Gaps = 22/204 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--- 155
++ I GKN+E+T+ ++++V K+ K L VDV LSV + PRI R
Sbjct: 1 MQFAIHGKNIEVTEPIRDYVSSKLDKVFAHFDQLTMGVDVYLSV-----ARNPRISRSHS 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ ++RAEE+ E +YASIDLV+ + R++RK KE+ + G
Sbjct: 56 AEVTV-QASGTIIRAEEETENLYASIDLVADKLHRQMRKYKERMQKKPKPKTGL------ 108
Query: 216 EPVTQVVENDADVQ--SEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
V N A + + +E + + +VR K+F MPP++ EA++ L VDHDF+ FR
Sbjct: 109 -----AVANQAPISLPNGDEKATALPKEVVRTKYFAMPPMSPEEALDHLALVDHDFFVFR 163
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N E+GEIN++Y R GGYG+I+P+
Sbjct: 164 NAESGEINVLYARNHGGYGLIVPR 187
>gi|87301168|ref|ZP_01084009.1| light repressed protein A-like protein [Synechococcus sp. WH 5701]
gi|87284136|gb|EAQ76089.1| light repressed protein A-like protein [Synechococcus sp. WH 5701]
Length = 195
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 125/206 (60%), Gaps = 20/206 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--C 156
+KL+I G+NL++T ++++ E K+G+A+ + LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPAIRDYTEAKLGRAINHYEGLVKEADVHLSV-----ARNPRVAQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASID+V+ + R+LR+ K++ S+H H G + V +
Sbjct: 56 EVTVFANG-VVIRAQERSENLYASIDMVAGKLSRQLRRYKDRLSNH--HGAG-SPANVGD 111
Query: 217 PVTQ-----VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
Q V+ ND E + VR K+F MP +++ +A+ QLE +DHDFY
Sbjct: 112 DTEQPSLEGVLPNDLIGDREPA----LPVPAVRRKYFSMPAMSLDQALHQLELIDHDFYV 167
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPK 297
FR E +G + +VY+R GG+GVI PK
Sbjct: 168 FREESSGGLQVVYRRNHGGFGVIQPK 193
>gi|88809273|ref|ZP_01124782.1| hypothetical protein WH7805_06256 [Synechococcus sp. WH 7805]
gi|88787215|gb|EAR18373.1| hypothetical protein WH7805_06256 [Synechococcus sp. WH 7805]
Length = 195
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 129/205 (62%), Gaps = 15/205 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++++ E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ K++ S + K E
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRYKDRHS----DHHHSHGHKASE 110
Query: 217 -PVTQ-VVENDADVQSEEEDDNF-VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
P T+ V++N+A V+S + + VR K+F MPP+T+ +A +QL+ +DHDFY FR
Sbjct: 111 TPTTEAVLDNEAVVESLLDGKEVQLPSPGVRRKYFAMPPMTLEQARQQLDLIDHDFYVFR 170
Query: 274 NEETGEINIVYKRKAGGYGVIIPKG 298
+ ++GE+ ++Y R GGYGVI +G
Sbjct: 171 DSDSGELQVIYHRNHGGYGVIEARG 195
>gi|299471126|emb|CBN78984.1| ribosomal protein rpS22, plastidal [Ectocarpus siliculosus]
Length = 269
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 24/210 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRCE 157
+I+ G N+E+T+ +K +VE+K+ K + K V +VDV LSV K P + E
Sbjct: 68 IIVTGNNVEVTEPLKEYVEKKMAKVLDKVGSSVSKVDVHLSV-----NKNPSVSDNHNTE 122
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+F+K H V+RA ++++ +YAS+D V+ IQRKLR+ KE++ R G L
Sbjct: 123 VTVFSKNH-VIRATDNSDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGVGGLS---- 177
Query: 218 VTQVVENDADVQSEEE------DDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDH 267
+ E D D + E +D + DE +V+ K F MP +++ EA+ LE + H
Sbjct: 178 -EKTAEKDMDAAAAEAADEDPFEDKYGDEPEAMAVVKTKSFPMPAISLEEAVTCLEYIGH 236
Query: 268 DFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
DFY FRNEET E+N+VYKRK+GG G+I P+
Sbjct: 237 DFYLFRNEETNEVNVVYKRKSGGVGLIEPE 266
>gi|33239849|ref|NP_874791.1| ribosome-associated protein Y [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237375|gb|AAP99443.1| Ribosome-associated protein Y [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 195
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 123/203 (60%), Gaps = 13/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I G+NLELT ++ + + K+ KA+ +V+E DV LSV K PR+ +
Sbjct: 1 MKVLIHGRNLELTPALREYTKSKLEKAIHHFGDMVKEADVHLSV-----AKNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E ++ +YASIDLVS+ + R+LR+ KE+ SDH H +R +
Sbjct: 56 EVTVFANG-TVIRAQERSQNLYASIDLVSNKLCRQLRRYKERHSDH--HHSPGHRASI-T 111
Query: 217 PVTQVVENDADVQSE--EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V D + E + + + +R K+F M P+ + +A QL+ +DHDFY F+
Sbjct: 112 PTTEEVLEDKSINGSLVEGKEAKLPKPGIRRKYFPMHPMNIEQAQHQLDLIDHDFYLFKE 171
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E+ ++ ++Y+RK GGYGVI K
Sbjct: 172 AESEQLQVIYRRKNGGYGVIQAK 194
>gi|33865201|ref|NP_896760.1| light repressed protein A-like protein [Synechococcus sp. WH 8102]
gi|33638885|emb|CAE07182.1| light repressed protein A homolog [Synechococcus sp. WH 8102]
Length = 195
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 124/207 (59%), Gaps = 19/207 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ + K+ +A + VRE DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATHHFGNAVREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDL +S + R+LR+ KE+ S H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLAASKLARQLRRWKERHS---DHHHSHGHSASTT 111
Query: 217 PVTQVVENDADV-----QSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
P T+ V +D+ V Q E + + + VR K+F MPP+++ EA QL+ +DHDFY
Sbjct: 112 PATEAVTDDSQVDGSLLQGREAE---LPDPGVRRKYFAMPPMSLEEARRQLDLIDHDFYL 168
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPKG 298
FR++++ ++ ++Y+R GGYGVI +G
Sbjct: 169 FRDKDSDQLQVIYRRNHGGYGVIQARG 195
>gi|78778781|ref|YP_396893.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Prochlorococcus marinus str. MIT 9312]
gi|78712280|gb|ABB49457.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Prochlorococcus marinus str. MIT 9312]
Length = 194
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 13/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I GKNLELT +K + + K+ KA + +V+E D+ LS+ K P + +
Sbjct: 1 MKILIHGKNLELTGALKEYTQAKIEKATHHYKDIVKEADIHLSIE-----KNPSVSLQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKV 214
EVT+F V+RAEE E +Y+SIDLVS+ + RKLRK KE+ ++++ K +
Sbjct: 56 EVTIFANG-TVIRAEEKTENLYSSIDLVSNKLCRKLRKYKERNYKTNYINQFKNNESFPI 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ V++ Q E + E ++ K+FEM P++ EA +QL+ +DHDFY FRN
Sbjct: 115 ESADSNVLDKTLFKQGREAS---LPEPSIKNKYFEMNPISSEEARKQLDLIDHDFYVFRN 171
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
++ E+ ++YKR GGYG+I K
Sbjct: 172 KKNNELQVIYKRNHGGYGLIQSK 194
>gi|307105805|gb|EFN54053.1| hypothetical protein CHLNCDRAFT_136132 [Chlorella variabilis]
Length = 254
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 127/208 (61%), Gaps = 11/208 (5%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP----- 151
S+ ++++QG+NLE T +K + E+KVGKAV K+ ++EVDV+LSVRG G+G
Sbjct: 50 STARIVVQGRNLETTPAIKQYCEDKVGKAV-KNFDGIKEVDVKLSVRGNPRGRGTEAHHQ 108
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+FT +HGVVR EE + +YA++DLVS ++RKL K+KE+ + R
Sbjct: 109 REQIVEVTVFTLRHGVVRVEEHEDDLYAAVDLVSDKLKRKLVKVKERAV---QKANWPGR 165
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEV--IVRMKFFEMPPLTVSEAIEQLENVDHDF 269
+ T DV + D + +VR K E+ ++ EA++Q+ENV HDF
Sbjct: 166 GGPKGGDTIAAHLGEDVVDKLPTDQIAPPLPEVVREKVLEVTAMSTDEAMDQIENVGHDF 225
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIPK 297
Y F++ G + ++Y+RK+ G+GVIIPK
Sbjct: 226 YLFKDSADGAMKVLYRRKSHGFGVIIPK 253
>gi|116075038|ref|ZP_01472298.1| hypothetical protein RS9916_25799 [Synechococcus sp. RS9916]
gi|116067235|gb|EAU72989.1| hypothetical protein RS9916_25799 [Synechococcus sp. RS9916]
Length = 195
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++ + E K+ +AV + +V E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEVTAALREYTESKLERAVQHYDEMVVEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+LR+ KE+ S H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVANKLSRQLRRYKERHS---DHHHSHGHRASTT 111
Query: 217 PVTQVVENDADVQSEEED--DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V +D+ V D + + + VR K+F MPP++V EA QL+ +DHDF+ FR+
Sbjct: 112 PTTEAVLDDSAVDGSLLDGKEAHLPDPGVRRKYFPMPPMSVEEARHQLDLIDHDFFLFRD 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
+ E+ ++Y+R GGYGVI
Sbjct: 172 ASSKELQVIYRRNHGGYGVI 191
>gi|148238914|ref|YP_001224301.1| light repressed protein A-like protein [Synechococcus sp. WH 7803]
gi|147847453|emb|CAK23004.1| Light repressed protein A homolog [Synechococcus sp. WH 7803]
Length = 195
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++++ E K+ +A+ LV+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPALRDYTETKLDRAIHNFGDLVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+S + R+LR+ K++ S H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVASKLARQLRRFKDRHS---DHHHSHGHRASET 111
Query: 217 PVTQVVENDADVQSEEEDDNFVD--EVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V +D + D V VR K+F MPP+T+ +A +QL+ +DHDFY FR+
Sbjct: 112 PTTESVLDDEAIVESLLDGKEVQLPSPGVRRKYFSMPPMTLEQARQQLDLIDHDFYLFRD 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
+G++ ++Y+R GGYGVI
Sbjct: 172 SASGDLQVIYRRNHGGYGVI 191
>gi|78184235|ref|YP_376670.1| sigma 54 modulation protein/ribosomal protein S30EA [Synechococcus
sp. CC9902]
gi|78168529|gb|ABB25626.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Synechococcus sp. CC9902]
Length = 195
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I G+NLE+T ++ + K+ +A +RE DV LSV + PR+ +
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV + R+LRK KE+ +DH L
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLT--- 111
Query: 217 PVTQVVENDADVQSEEED--DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V +++ V+ D + + E VR K+F MPP+T+ +A QL+ +DHDFY FR+
Sbjct: 112 PSTEEVSDESAVEGSLVDGKEAQLPEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYLFRD 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
+TG++ ++Y+R GGYGVI
Sbjct: 172 SKTGDLQVIYRRNHGGYGVI 191
>gi|224121048|ref|XP_002318484.1| predicted protein [Populus trichocarpa]
gi|222859157|gb|EEE96704.1| predicted protein [Populus trichocarpa]
Length = 118
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 84/130 (64%), Gaps = 18/130 (13%)
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGPRIR+ EDAE + + KLRKIK+KESDHGRHM
Sbjct: 1 MGKGPRIRK----------------EDAEKSKQVLIWCRQLFN-KLRKIKDKESDHGRHM 43
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVD 266
KGFN+LKVREP++Q VEN AD S+ +DD+ +DE V K+F+MPPLTV EAI +L NVD
Sbjct: 44 KGFNKLKVREPMSQEVENVADTVSQRKDDDNLDEA-VHTKYFDMPPLTVHEAIVRLGNVD 102
Query: 267 HDFYGFRNEE 276
H FYGF + E
Sbjct: 103 HAFYGFGHAE 112
>gi|116071120|ref|ZP_01468389.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Synechococcus sp. BL107]
gi|116066525|gb|EAU72282.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Synechococcus sp. BL107]
Length = 195
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+K++I G+NLE+T ++ + K+ +A +RE DV LSV + PR+ +
Sbjct: 1 MKVLIHGRNLEITPALREYTNTKLERATSHFGDAIREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV + R+LRK KE+ +DH L
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVVGKLARQLRKWKERHADHHHSHGHSASLT--- 111
Query: 217 PVTQVVENDADVQSEEED--DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V +++ V+ D + + E VR K+F MPP+T+ +A QL+ +DHDFY F++
Sbjct: 112 PSTEEVSDESVVEGSLVDGKEAQLPEPGVRRKYFSMPPMTLDDARHQLDVIDHDFYLFKD 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
TG + ++Y+R GGYGVI
Sbjct: 172 SATGALQVIYRRNHGGYGVI 191
>gi|78213530|ref|YP_382309.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Synechococcus sp. CC9605]
gi|78197989|gb|ABB35754.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Synechococcus sp. CC9605]
Length = 195
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 119/204 (58%), Gaps = 21/204 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++++ + K+ +A VRE DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEITPALRDYTQTKLERATSHFGDAVREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDL + + R+LR+ KE+ SDH
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLAAGKLARQLRRWKERHSDH---HHSHGHSASHT 111
Query: 217 PVTQVVENDAD------VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
P T VV NDA +Q E + + + VR K+F MPP+ + EA QL+ +DHDFY
Sbjct: 112 PSTDVV-NDASPVEASLLQGREAE---LPDPGVRRKYFAMPPMGLEEARRQLDLIDHDFY 167
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
FR +E+ ++ ++Y+R GGYGVI
Sbjct: 168 LFREKESDQLQVIYRRNHGGYGVI 191
>gi|260436336|ref|ZP_05790306.1| sigma 54 modulation protein [Synechococcus sp. WH 8109]
gi|260414210|gb|EEX07506.1| sigma 54 modulation protein [Synechococcus sp. WH 8109]
Length = 195
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 120/200 (60%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T +++++ + K+ +A VRE DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLEITPSLRDYTQTKLERATSHFGDAVREADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDL + + R+LR+ KE+ SDH
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLAAGKLARQLRRWKERHSDH---HHSHGHSASHT 111
Query: 217 PVTQVVENDADVQSE--EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T VV + + V+S + + + + VR K+F MPP+ + +A QL+ +DHDFY FR
Sbjct: 112 PSTDVVNDASPVESSLLQGREAELPDPGVRRKYFAMPPMGLEDARRQLDLIDHDFYLFRE 171
Query: 275 EETGEINIVYKRKAGGYGVI 294
+E+ ++ ++Y+R GGYGVI
Sbjct: 172 KESDQLQVIYRRNHGGYGVI 191
>gi|159902939|ref|YP_001550283.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9211]
gi|159888115|gb|ABX08329.1| light repressed protein A-like protein [Prochlorococcus marinus
str. MIT 9211]
Length = 197
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 13/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--C 156
+KL+I G+NLELT +++ + + K+ KA+ +V+E DV LS+ K P + +
Sbjct: 1 MKLLIHGRNLELTPSLREYTQSKLEKAIHHFDGIVQEADVHLSI-----AKNPSVPQQIA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E ++ +YASIDLV++ + R+LRK KE+ SDH L
Sbjct: 56 EVTVFANG-TVIRAQERSQNLYASIDLVATKLCRQLRKYKERHSDHHHSHGHSASLT--- 111
Query: 217 PVTQVVENDADVQSE--EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T+ V D + S + + + +R K+F MPP++ +A QL+ +DHDFY F+
Sbjct: 112 PTTEAVVEDKAIDSSLIQGKEAHLPTPGIRRKYFSMPPMSTEQARHQLDLIDHDFYMFKE 171
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
ET ++ ++Y+R GGYG+I K
Sbjct: 172 IETQQLQVIYRRTHGGYGIIQAK 194
>gi|224121008|ref|XP_002318474.1| predicted protein [Populus trichocarpa]
gi|222859147|gb|EEE96694.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 74/102 (72%), Gaps = 15/102 (14%)
Query: 190 RKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVI------- 242
RKLRKIK+KESDHGRHMKGFN+LKVREP++QVVENDAD S+ +DD+ +DE+
Sbjct: 8 RKLRKIKDKESDHGRHMKGFNKLKVREPMSQVVENDADTVSQRKDDDNLDELFYMHLVTI 67
Query: 243 --------VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V K+F+MPPLTV EAI +L NVDH FYGF + E
Sbjct: 68 HSIISSNAVHTKYFDMPPLTVDEAIVRLGNVDHAFYGFGHAE 109
>gi|303289156|ref|XP_003063866.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454934|gb|EEH52239.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 124/207 (59%), Gaps = 12/207 (5%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHS-HLVREVDVRLSVRGGEFGKGPR 152
P K+I+QG++LE+T+ ++++ E+K+ KAV H VREVDV S R E +G
Sbjct: 41 APAKGTKVIVQGRHLEITEAIRDYCEQKINKAVSHFDMHDVREVDVTCSARS-EKQQGGD 99
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
++ +VT++T+ +GVVR+EE+A+ +YASID VS I+RKLRKIKEK++ N
Sbjct: 100 LQMTQVTVYTR-NGVVRSEEEADNLYASIDAVSDKIERKLRKIKEKKNSKKAGKTKAN-- 156
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEV--IVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
P Q + A +E E V +K+ + T EA E++E++ H FY
Sbjct: 157 ----PKAQTADIVAAAAEADEARADEIEFEETVGVKYMAVKTSTAMEAAEEMESLGHVFY 212
Query: 271 GFRNEET-GEINIVYKRKAGGYGVIIP 296
F+N+ GE+N+VYKR AGGY V++P
Sbjct: 213 AFKNKANGGEVNVVYKRDAGGYAVLVP 239
>gi|317969070|ref|ZP_07970460.1| light repressed protein A-like protein [Synechococcus sp. CB0205]
Length = 195
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 114/203 (56%), Gaps = 13/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NLE+T ++ + EEK+ +A +V+E DV LSV + PR+ +
Sbjct: 1 MKLVIHGRNLEVTPAIREYTEEKLKRATSHFDGMVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV+ + R+LR+ K++ H
Sbjct: 56 EVTVFANG-TVIRAQERSENLYASIDLVAGKLTRQLRRYKDRHG---DHHHSHGHHASET 111
Query: 217 PVTQVVENDADVQSEEED--DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P + D V D + + VR K+F MP +++ EA+ QLE +DHDFY FR+
Sbjct: 112 PSVVEMAGDDSVSGSLLDGKEAGLPSRGVRRKYFSMPAMSLEEALHQLELIDHDFYLFRD 171
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
+ E+ +VY+R GG+GVI K
Sbjct: 172 AGSDELQVVYRRNHGGFGVIQAK 194
>gi|449018725|dbj|BAM82127.1| probable plastid-specific ribosomal protein PSRP-1 precursor
[Cyanidioschyzon merolae strain 10D]
Length = 297
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 126/251 (50%), Gaps = 49/251 (19%)
Query: 85 PLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRG 144
P +RMS P ++ + + G N++LT ++ HV +K+G V K LV V+V LSV
Sbjct: 57 PRCLRMS--AP-TTTPITVTGDNIDLTSALREHVLDKIGHVVEKFPGLVTRVEVHLSV-- 111
Query: 145 GEFGKGPRIRR---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD 201
PRI+ CEVT + + V+RA E +YA+IDL + ++R LRK KE+ +
Sbjct: 112 ---AHNPRIKNAHDCEVTAYARGR-VLRASVKMENMYAAIDLTADKLKRTLRKYKERLHE 167
Query: 202 HG-------------------------RHMKGFNRLKVREPVTQVVENDA---------D 227
H M G + PV V++ A +
Sbjct: 168 HSPTADLVEVALLEDRRTRASSPSAPVESMDGLASVPATSPVP--VDDGAPYEGSKHRRE 225
Query: 228 VQSEEEDDNF-VDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 286
V+SE E+ +VR K F MP TV EA+ L+ +DHDFY FRN +TGE+N+VY+R
Sbjct: 226 VESELEEMGIEPSREVVRKKRFPMPLQTVEEAVLCLDYIDHDFYVFRNADTGEVNVVYRR 285
Query: 287 KAGGYGVIIPK 297
+ GG G+I P+
Sbjct: 286 RHGGVGLIEPE 296
>gi|427702588|ref|YP_007045810.1| ribosomal subunit interface protein [Cyanobium gracile PCC 6307]
gi|427345756|gb|AFY28469.1| ribosomal subunit interface protein [Cyanobium gracile PCC 6307]
Length = 195
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 114/198 (57%), Gaps = 10/198 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+KL+I G+NL++T ++ + E K+ +A+ +V+E DV LSV + PR+ +
Sbjct: 1 MKLLIHGRNLDVTPAIREYTETKLNRAISHFDGIVKEADVHLSV-----ARNPRVPQQTA 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F V+RA+E +E +YASIDLV++ + R+L + K++ + R +R E
Sbjct: 56 EVTVFANG-VVIRAQERSENLYASIDLVATKLSRQLTRYKDRLQE--RSQGPVHRSAAAE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ + + V VR K+F MP + + EA+ QL+ +DHDFY FR+
Sbjct: 113 EAGAATLPNPGGSLTDGLEPAVPHRGVRRKYFAMPAMDLEEALHQLDLIDHDFYMFRDAA 172
Query: 277 TGEINIVYKRKAGGYGVI 294
TG+I +VY+R GG+GVI
Sbjct: 173 TGQIQVVYRRNHGGFGVI 190
>gi|224099589|ref|XP_002334465.1| predicted protein [Populus trichocarpa]
gi|222872342|gb|EEF09473.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats.
Identities = 58/68 (85%), Positives = 61/68 (89%)
Query: 250 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLE 309
MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYG IIPKGN +A++LEPL
Sbjct: 1 MPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGPIIPKGNYEAERLEPLV 60
Query: 310 VETASSSS 317
VE A S
Sbjct: 61 VEPAREPS 68
>gi|164687099|ref|ZP_02211127.1| hypothetical protein CLOBAR_00725 [Clostridium bartlettii DSM
16795]
gi|164603984|gb|EDQ97449.1| ribosomal subunit interface protein [Clostridium bartlettii DSM
16795]
Length = 187
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 122/197 (61%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K++I GK +ELTD +K VE+K+ K + ++ H EV V +S R + ++ EV
Sbjct: 7 MKILITGKKIELTDGIKGAVEDKLSK-LDRYLHEDTEVKVTVSARKAK-------QKIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ E +YA+ID+V + ++LR+ K K +KG + K +E +
Sbjct: 59 TIIPINGPIIRAEDSEENLYAAIDVVYDKLNKQLRRYKNK-------LKGKYQSKGQESI 111
Query: 219 T-QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q +E++A +E++D F D VI R K F+M P++ EA+ Q+E V HDFY FRN +T
Sbjct: 112 RFQNIEDNA---AEDKDGEF-DIVIERHKKFDMKPMSPEEAVLQMELVGHDFYMFRNIDT 167
Query: 278 GEINIVYKRKAGGYGVI 294
EI+IVY+R+ GGYG+I
Sbjct: 168 DEISIVYRRETGGYGLI 184
>gi|160878413|ref|YP_001557381.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
phytofermentans ISDg]
gi|160427079|gb|ABX40642.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
phytofermentans ISDg]
Length = 178
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 22/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II GKN+++T+ +K+ + EK+GK + K+ + E+ V LSV ++ EV
Sbjct: 1 MRYIISGKNIDVTEGLKSAIYEKIGK-LEKYFNPEAEIHVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +VRAE+ + +YASIDLV +I+R+L+K K K D + FN
Sbjct: 53 TI-PMKGNIVRAEQVSNDMYASIDLVEEVIERQLKKYKSKLKDMNQSAANFN-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E+ + S+EED N I R+K F M P+ EA Q+E + H+FY FRN ET
Sbjct: 104 PSFFEDVLNEDSDEEDIN-----ITRVKRFAMKPMDAEEACVQMELLGHNFYVFRNAETD 158
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 159 EVNVVYKRKGNSYGLIEPE 177
>gi|224110140|ref|XP_002333151.1| predicted protein [Populus trichocarpa]
gi|222834989|gb|EEE73438.1| predicted protein [Populus trichocarpa]
Length = 102
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 70/98 (71%), Gaps = 15/98 (15%)
Query: 194 KIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVI----------- 242
KIK+KESDHGRHMKGFN+ KVREP++QVVENDAD S+ +DD+ +DE+
Sbjct: 2 KIKDKESDHGRHMKGFNKFKVREPMSQVVENDADTVSQRKDDDNLDELFYMHLVTIHSII 61
Query: 243 ----VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V K+F+MPP+TV EAI +L NVDH FYGFR+ E
Sbjct: 62 SSNAVHTKYFDMPPVTVDEAIVRLGNVDHAFYGFRHAE 99
>gi|323456455|gb|EGB12322.1| hypothetical protein AURANDRAFT_59830, partial [Aureococcus
anophagefferens]
Length = 222
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 119/197 (60%), Gaps = 22/197 (11%)
Query: 93 DGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR 152
DG +S+V NL++TD+++++VE+K+G + K + + + D LSV + P
Sbjct: 45 DGAISTV----SANNLKMTDSMRDYVEDKIGTVISKFAGVAQRCDTHLSVM-----RNPA 95
Query: 153 IRR---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+ EV +F K VVRAEE + ++Y+SIDLV+ + RKLRK+KE++ G+ K
Sbjct: 96 VSDSDVAEVVVFCKGE-VVRAEERSPSMYSSIDLVADKVARKLRKVKERK--EGKRSKP- 151
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
K++ + + +E+ A EEE F ++R K + MP ++ +A+ ++ +DHDF
Sbjct: 152 ---KLKVSLAEAIESTA---LEEEPPLFDATTLIRKKKYPMPEQSLVDAMVCMDGLDHDF 205
Query: 270 YGFRNEETGEINIVYKR 286
Y F++EETG+IN++YKR
Sbjct: 206 YMFKSEETGQINVIYKR 222
>gi|223994401|ref|XP_002286884.1| light-repressed protein a [Thalassiosira pseudonana CCMP1335]
gi|220978199|gb|EED96525.1| light-repressed protein a [Thalassiosira pseudonana CCMP1335]
Length = 198
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 117/204 (57%), Gaps = 20/204 (9%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT- 159
+++ G N++LT + ++V K+ K V K V DV L+V K P+++
Sbjct: 7 IVVTGDNIDLTPALSDYVNSKIEKTVGKLPLAVSHCDVYLTVN-----KNPKVKDAHTAE 61
Query: 160 -LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKVRE 216
+ T K R E + +YASIDLV++ + RKLRK KE+ D HG G N + E
Sbjct: 62 VVTTLKGTTFRVAESSPDMYASIDLVAARLARKLRKYKERRLDGYHGGPNMGEN---IAE 118
Query: 217 PVTQVVENDADVQSEEEDDNFVD---EVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + ++++ +EEE +++D V+ ++K P+++ EAI L+ +DHDFY FR
Sbjct: 119 VLNAIEVDESEDGAEEE--SYIDPDQAVVTKVK---STPISIKEAIFALDYIDHDFYVFR 173
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
+EET E+++VYKR AGG G+I P+
Sbjct: 174 DEETNEVSVVYKRNAGGVGLIQPE 197
>gi|291562723|emb|CBL41539.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[butyrate-producing bacterium SS3/4]
Length = 175
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GKN+ +T +K+ VE K+GK + ++ EV V LSV G ++ EV
Sbjct: 1 MRYTISGKNINITPGLKDAVESKLGK-LERYFSPDTEVQVTLSVEKGR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAE+D+ +Y S+DLV II+R+++K K K D ++ FN
Sbjct: 53 TI-PVKGSIIRAEQDSSDMYVSVDLVEEIIERQIKKYKTKIVDKKQNALAFN-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+A +Q E E + V+ IV+ K F M P+ EA Q+E + H+F+ F N +T
Sbjct: 104 ------EAFLQEESEPEETVN--IVKTKRFAMKPMDAEEACVQMELLGHNFFMFLNADTN 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 156 EVNVVYKRKGNSYGLIEPE 174
>gi|325283884|ref|YP_004256425.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
proteolyticus MRP]
gi|324315693|gb|ADY26808.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
proteolyticus MRP]
Length = 186
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 108/195 (55%), Gaps = 14/195 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +E+TD ++ +V+EK+ + + + + + V L+VR + R R EV +
Sbjct: 6 LSGRGVEITDPLRGYVDEKLSR-LDRFNGDITSARVTLTVR--DVKNAARRNRVEVQI-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
HG++RAEE +YA+ID S +++R+LRK K + + + E Q
Sbjct: 62 VPHGIIRAEETHADMYAAIDKASDVLERQLRKFKTRLLKQRQEGAPQPQPGPAELAAQTA 121
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E+DA++Q E IVR K FEM P+T +A+ Q+E + HDFY F+N +T +
Sbjct: 122 EDDAELQPE----------IVRQKQFEMRPMTPQDAVFQMEALGHDFYVFKNMDTDSCGV 171
Query: 283 VYKRKAGGYGVIIPK 297
VY+RK G YG+I PK
Sbjct: 172 VYRRKDGHYGLIEPK 186
>gi|302385042|ref|YP_003820864.1| ribosomal subunit interface protein [Clostridium saccharolyticum
WM1]
gi|302195670|gb|ADL03241.1| ribosomal subunit interface protein [Clostridium saccharolyticum
WM1]
Length = 175
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 112/199 (56%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+T ++ VE+K+GK + + E VRLSV+ +++ EV
Sbjct: 1 MRFTITGRNIEVTPGLREAVEDKLGK-LDRFFAPATEATVRLSVQK-------EMQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAEE + +Y SIDLV I++R+L+K K K D + F+
Sbjct: 53 TIPVKGH-IIRAEESSTDMYVSIDLVEEILERQLKKYKNKLIDKKLNTPSFSA------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
A ++ E + D++++ IV+ K F + P+ EA Q+E + H FY F N +T
Sbjct: 105 -------AFIEEETQTDDYIE--IVKTKKFAVKPMDPEEACVQMELLGHSFYVFLNADTD 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK G YG+I P+
Sbjct: 156 EVNVVYKRKGGSYGLIEPE 174
>gi|94985484|ref|YP_604848.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
geothermalis DSM 11300]
gi|94555765|gb|ABF45679.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
geothermalis DSM 11300]
Length = 186
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 112/194 (57%), Gaps = 14/194 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+++TD ++++VEEK+ + + + S + + V L+VR + R R EV L
Sbjct: 6 LSGRNVDVTDAMRDYVEEKLTR-LDRFSDQITDARVVLTVR--DVRDAGRRNRVEVQL-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+G++RAEE +YA+ID S +++R+LRK K K H + P Q
Sbjct: 62 VPNGIIRAEEHHADMYAAIDRASDVLERQLRKFKTKYLRHRQEAA---------PPPQPG 112
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ADV + +D F E IVR K F++ P++ +A+ Q+E + HDFY F+N +TG +
Sbjct: 113 LAEADVNAGLDDTEFRPE-IVRTKRFDLRPMSPEDAVTQMEALGHDFYVFKNMDTGGCAV 171
Query: 283 VYKRKAGGYGVIIP 296
VY+R+ G YG+I P
Sbjct: 172 VYRRRDGHYGLIEP 185
>gi|219130463|ref|XP_002185384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403098|gb|EEC43053.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 209
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 21/211 (9%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAV--LKHSHLVREVDVRLSVRGGEFGKGPRIR 154
+ V +II G+N+ELT + HV +++G + L + ++E DV LSV K P+++
Sbjct: 9 TEVPVIINGQNIELTPALVEHVNKRIGGQINKLASNGAIQECDVILSV-----SKNPKVK 63
Query: 155 ---RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE--SDHGRHMKGF 209
R EV K ++ E + +YASID S + RKL K K+ HG G
Sbjct: 64 NGHRVEVVTNLKGTSIICHNESPD-MYASIDAASHALYRKLCKYKDNRVAGWHGGEKMGN 122
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDE---VIVRMKFFEMP-PLTVSEAIEQLENV 265
+ ++V E + V E A +EE +VD I ++K F++ P++V EA+ L+ +
Sbjct: 123 DIMEVLENLEDVSEYTATPVAEE----YVDPEAPTITKVKNFDLTKPMSVQEAVFALDYI 178
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
DHDFY FRN ET EI++VYKR GG G++ P
Sbjct: 179 DHDFYVFRNAETNEISVVYKRHVGGIGLVEP 209
>gi|337744475|ref|YP_004638637.1| hypothetical protein KNP414_00116 [Paenibacillus mucilaginosus
KNP414]
gi|379718115|ref|YP_005310246.1| hypothetical protein PM3016_110 [Paenibacillus mucilaginosus 3016]
gi|386720675|ref|YP_006187000.1| hypothetical protein B2K_00570 [Paenibacillus mucilaginosus K02]
gi|336295664|gb|AEI38767.1| YvyD [Paenibacillus mucilaginosus KNP414]
gi|378566787|gb|AFC27097.1| YvyD [Paenibacillus mucilaginosus 3016]
gi|384087799|gb|AFH59235.1| hypothetical protein B2K_00570 [Paenibacillus mucilaginosus K02]
Length = 185
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 115/201 (57%), Gaps = 21/201 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL--VREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G N+E+TD +++HVE+K+ + + K+ EV V LSV G ++
Sbjct: 1 MKFNIRGVNIEVTDALRDHVEKKLSR-LEKYFEAPPTSEVSVSLSVLKG-------LQAV 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVR 215
EVT+ + ++RAEE +YAS+DLV ++R++RK K K + R G L +
Sbjct: 53 EVTI-PLPNLLLRAEERQADMYASVDLVVDKLERQIRKAKTKANRKIRQEGGLKDLFRAS 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EP +D+ V EE+D+F +VR K F + P+ + EAI Q+ V H+F+ F N
Sbjct: 112 EP------DDSYVAVHEEEDDFE---LVRTKRFTLKPMDIDEAILQMNMVGHNFFVFANS 162
Query: 276 ETGEINIVYKRKAGGYGVIIP 296
+T E+N+VYKR G YG+I P
Sbjct: 163 DTSEVNVVYKRNDGKYGLIEP 183
>gi|167767704|ref|ZP_02439757.1| hypothetical protein CLOSS21_02239 [Clostridium sp. SS2/1]
gi|429761691|ref|ZP_19294107.1| ribosomal subunit interface protein [Anaerostipes hadrus DSM 3319]
gi|167710443|gb|EDS21022.1| ribosomal subunit interface protein [Clostridium sp. SS2/1]
gi|429183126|gb|EKY24195.1| ribosomal subunit interface protein [Anaerostipes hadrus DSM 3319]
Length = 179
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 116/204 (56%), Gaps = 28/204 (13%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRI 153
+ ++K II GKN+E+T+ +K +EEK+G+ +LV + V+V LSV+ G
Sbjct: 1 MGAMKFIISGKNIEVTEGIKAAIEEKLGRL---DKYLVDDTIVNVTLSVQKGR------- 50
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
++ EVT+ K H ++RAEE +E +Y SIDLV +I+R++R+ K + + F +
Sbjct: 51 QKIEVTIPMKGH-IIRAEEGSEDMYVSIDLVVDVIERQIRRYKTRLMNQKYDGTSFKQ-- 107
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ +E+D + I+R K F + P+ V EA Q+E + HDF+ FR
Sbjct: 108 -------------EFMEQEDDVEDDEIRIIRSKKFAIKPMDVEEACVQMELLGHDFFVFR 154
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N +T E+N+VYKRK YG+I P+
Sbjct: 155 NADTFEVNVVYKRKGNTYGLIEPE 178
>gi|266622719|ref|ZP_06115654.1| ribosomal subunit interface protein [Clostridium hathewayi DSM
13479]
gi|288865529|gb|EFC97827.1| ribosomal subunit interface protein [Clostridium hathewayi DSM
13479]
Length = 175
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+T ++ VE+K+GK + + E VRLSV+ I++ EV
Sbjct: 1 MRFTITGRNIEVTQGLREAVEDKLGK-LDRFFAPATEAVVRLSVQKD-------IQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAEE + +Y SIDLV I++R+L+K K K D + F+ ++E
Sbjct: 53 TIPVKGH-IIRAEESSSDMYVSIDLVEEILERQLKKYKNKLIDKKQSAPSFSEAFLQE-- 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
D +EEE IV+ K F + P+ EA Q+E + H+FY F N +T
Sbjct: 110 --------DASAEEEIQ------IVKSKKFAVKPMDPEEACVQMELLGHNFYVFLNADTE 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK G YG+I P+
Sbjct: 156 EVNVVYKRKGGTYGLIEPE 174
>gi|255654233|ref|ZP_05399642.1| putative RNA-binding protein [Clostridium difficile QCD-23m63]
Length = 183
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 1 MNIIISGKQIELTDAIKNKIESKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 106
Query: 219 TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
DA++ +E +++ DE VI R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 107 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 160
Query: 275 EETGEINIVYKRKAGGYGVI 294
++ EI +VYKR GGYG+I
Sbjct: 161 IDSDEIAVVYKRNNGGYGII 180
>gi|296452518|ref|ZP_06894215.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296881070|ref|ZP_06905013.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
gi|296258623|gb|EFH05521.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296427936|gb|EFH13840.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
Length = 189
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 7 MNIIISGKQIELTDAIKNKIESKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 59 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 112
Query: 219 TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
DA++ +E +++ DE VI R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 113 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 166
Query: 275 EETGEINIVYKRKAGGYGVI 294
++ EI +VYKR GGYG+I
Sbjct: 167 IDSDEIAVVYKRNNGGYGII 186
>gi|126697714|ref|YP_001086611.1| RNA-binding protein [Clostridium difficile 630]
gi|255099302|ref|ZP_05328279.1| putative RNA-binding protein [Clostridium difficile QCD-63q42]
gi|255305087|ref|ZP_05349259.1| putative RNA-binding protein [Clostridium difficile ATCC 43255]
gi|423088859|ref|ZP_17077229.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
gi|115249151|emb|CAJ66962.1| putative RNA-binding protein [Clostridium difficile 630]
gi|357558973|gb|EHJ40442.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
Length = 183
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 106
Query: 219 TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
DA++ +E +++ DE VI R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 107 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 160
Query: 275 EETGEINIVYKRKAGGYGVI 294
++ EI +VYKR GGYG+I
Sbjct: 161 IDSDEIAVVYKRNNGGYGII 180
>gi|423080611|ref|ZP_17069231.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
gi|423085976|ref|ZP_17074409.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|357548000|gb|EHJ29873.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|357552984|gb|EHJ34747.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
Length = 189
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 7 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 59 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 112
Query: 219 TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
DA++ +E +++ DE VI R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 113 ------DAEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 166
Query: 275 EETGEINIVYKRKAGGYGVI 294
++ EI +VYKR GGYG+I
Sbjct: 167 IDSDEIAVVYKRNNGGYGII 186
>gi|302336209|ref|YP_003801416.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Olsenella
uli DSM 7084]
gi|301320049|gb|ADK68536.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Olsenella
uli DSM 7084]
Length = 192
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 16/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
V + I G+ + +TD +++HV EKVG+++ ++ + + +R + P + CEV
Sbjct: 2 VDIKISGRKVSVTDAMRDHVNEKVGESLKVFD--IKPMTCDVVLRVDKNPSNPDRKMCEV 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F + + VVR E + +YA+ID + + R+LRK K + D + V PV
Sbjct: 60 TVFVRDN-VVRVEASSADMYAAIDEAADKVARQLRKYKTRVIDRRQR-------PVPMPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ AD+ +E+D +VR K ++ P+T EA+ Q + + HDFY F N TG
Sbjct: 112 PSSSDDLADLIVDEDD------ALVREKLIDLRPMTEEEALVQTDLIGHDFYVFENATTG 165
Query: 279 EINIVYKRKAGGYGVIIPK 297
IN++Y R GGYG+I P+
Sbjct: 166 LINVIYHRHNGGYGIIKPR 184
>gi|331003136|ref|ZP_08326646.1| hypothetical protein HMPREF0491_01508 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412967|gb|EGG92344.1| hypothetical protein HMPREF0491_01508 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 178
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLHK-LEKYFTADTEARITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK+ G++RAEE ++ +Y SID V II+++++K K K D + F+ + + V
Sbjct: 53 TIPTKQ-GLIRAEEVSQDMYVSIDKVQDIIEKQIKKFKNKLIDKKQAAMSFSDFFINDEV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
NDAD + E + IV+ K F + P+ EA Q+E + HDFY FRN +
Sbjct: 112 -----NDADDEDEIK--------IVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNAVSD 158
Query: 279 EINIVYKRKAGGYGVIIP 296
E+ +VYKRK G YG+I P
Sbjct: 159 EVCVVYKRKDGKYGIIEP 176
>gi|317497045|ref|ZP_07955373.1| sigma 54 modulation protein/S30EA ribosomal protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|291558926|emb|CBL37726.1| ribosomal subunit interface protein [butyrate-producing bacterium
SSC/2]
gi|316895705|gb|EFV17859.1| sigma 54 modulation protein/S30EA ribosomal protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 176
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 28/201 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K II GKN+E+T+ +K +EEK+G+ +LV + V+V LSV+ G ++
Sbjct: 1 MKFIISGKNIEVTEGIKAAIEEKLGRL---DKYLVDDTIVNVTLSVQKGR-------QKI 50
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ K H ++RAEE +E +Y SIDLV +I+R++R+ K + + F +
Sbjct: 51 EVTIPMKGH-IIRAEEGSEDMYVSIDLVVDVIERQIRRYKTRLMNQKYDGTSFKQ----- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ +E+D + I+R K F + P+ V EA Q+E + HDF+ FRN +
Sbjct: 105 ----------EFMEQEDDVEDDEIRIIRSKKFAIKPMDVEEACVQMELLGHDFFVFRNAD 154
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T E+N+VYKRK YG+I P+
Sbjct: 155 TFEVNVVYKRKGNTYGLIEPE 175
>gi|254973801|ref|ZP_05270273.1| putative RNA-binding protein [Clostridium difficile QCD-66c26]
gi|255091188|ref|ZP_05320666.1| putative RNA-binding protein [Clostridium difficile CIP 107932]
gi|255312845|ref|ZP_05354428.1| putative RNA-binding protein [Clostridium difficile QCD-76w55]
gi|255515604|ref|ZP_05383280.1| putative RNA-binding protein [Clostridium difficile QCD-97b34]
gi|260681920|ref|YP_003213205.1| RNA-binding protein [Clostridium difficile CD196]
gi|260685518|ref|YP_003216651.1| RNA-binding protein [Clostridium difficile R20291]
gi|306518818|ref|ZP_07405165.1| putative RNA-binding protein [Clostridium difficile QCD-32g58]
gi|384359472|ref|YP_006197324.1| RNA-binding protein [Clostridium difficile BI1]
gi|260208083|emb|CBA60322.1| putative RNA-binding protein [Clostridium difficile CD196]
gi|260211534|emb|CBE01707.1| putative RNA-binding protein [Clostridium difficile R20291]
Length = 183
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II GK +ELTD +KN +E K+ K + + H +V V +S R ++ EV
Sbjct: 1 MNIIISGKQIELTDAIKNKIETKLSK-LDNYIHPDTDVKVTVSARKAR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ E +Y +ID+V + ++L+K K++ D + K R +
Sbjct: 53 TIATVNGPIIRAEDMQENLYTAIDVVYDKLSKQLKKYKKRLQDKHKDNKSI-RFQ----- 106
Query: 219 TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
D+++ +E +++ DE VI R K F + P++ EA+ Q+E + HDFY F+N
Sbjct: 107 ------DSEINLADEQEDYGDENQELVIQRRKKFSVKPMSEEEAVLQMELIGHDFYMFKN 160
Query: 275 EETGEINIVYKRKAGGYGVI 294
++ EI +VYKR GGYG+I
Sbjct: 161 IDSDEIAVVYKRNNGGYGII 180
>gi|317121046|ref|YP_004101049.1| 30S ribosomal protein S30P;sigma 54 modulation protein
[Thermaerobacter marianensis DSM 12885]
gi|315591026|gb|ADU50322.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Thermaerobacter marianensis DSM 12885]
Length = 187
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 108/197 (54%), Gaps = 17/197 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CEVTLF 161
I GKN+++T+ +K + KVGK + + V LS+ R R EVT+
Sbjct: 5 IYGKNVDVTEALKEYARRKVGKVARYFTGTPLQAQVTLSIE--------RDRHIVEVTIP 56
Query: 162 TKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
G+ +RAEE+++ +YASIDLV ++R++RK K + + R ++ V E
Sbjct: 57 VPNSGLLIRAEEESDDMYASIDLVVDKLERQIRKFKTRLNRKARRLEATTGQAVPEADAP 116
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
V E D + EEE +VR K F + P+TV EAI Q+ + HDF+ F N TGEI
Sbjct: 117 VDEPDW-TEGEEEGR------VVRTKRFAVKPMTVDEAILQMNLLGHDFFVFANATTGEI 169
Query: 281 NIVYKRKAGGYGVIIPK 297
N++Y+R+ G YG+I P+
Sbjct: 170 NVLYRRRDGQYGLIEPE 186
>gi|255656424|ref|ZP_05401833.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-23m63]
gi|296450129|ref|ZP_06891890.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296878510|ref|ZP_06902515.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
gi|296260892|gb|EFH07726.1| ribosomal subunit interface protein [Clostridium difficile NAP08]
gi|296430317|gb|EFH16159.1| ribosomal subunit interface protein [Clostridium difficile NAP07]
Length = 185
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 117/196 (59%), Gaps = 14/196 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I+ G+ ++LTD +K +V+ K+ + +L E +V+++V K R ++ EV
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRL---EKYLDPESEVKVTVSA----KKDR-QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ + +YA+ID+V + R++ K K K D ++ K +R
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS-----IRFEN 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++N ++ + +D+ + + VI R K F + P++ EAI Q+E V H+FY FRN++
Sbjct: 108 VDFIDNSSEF-DDYDDEEYENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDNF 166
Query: 279 EINIVYKRKAGGYGVI 294
EINIVYKRKAGGYG+I
Sbjct: 167 EINIVYKRKAGGYGLI 182
>gi|328955034|ref|YP_004372367.1| 30S ribosomal protein S30P; sigma 54 modulation protein
[Coriobacterium glomerans PW2]
gi|328455358|gb|AEB06552.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Coriobacterium glomerans PW2]
Length = 194
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV EK+ A+ VD L P I EVTL
Sbjct: 5 VSGRKTTVTDALRAHVTEKIADALKVFDIEPMTVDAVLRYEKNPSNPQPAI--VEVTLRV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+K V+RA E +YA+IDL + ++R+LRK K K D +G + +V PV Q V
Sbjct: 63 RK-SVIRAVEHGADMYAAIDLAAEKVERQLRKYKTKVVDM--RQQGASAAQVV-PV-QRV 117
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E+ AD+ E+ D+ +VR K E+ P++ +A+ Q++ + HDFY F N+ TG IN+
Sbjct: 118 EDLADLLVPEDQDDQ----LVREKIIEITPMSEEQALVQIDLLGHDFYVFENDATGLINV 173
Query: 283 VYKRKAGGYGVIIPK 297
VY RK GGYG+I PK
Sbjct: 174 VYHRKNGGYGIIKPK 188
>gi|218132292|ref|ZP_03461096.1| hypothetical protein BACPEC_00150 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992807|gb|EEC58808.1| ribosomal subunit interface protein [[Bacteroides] pectinophilus
ATCC 43243]
Length = 179
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 24/202 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+ ++ +I G+N+E+TD +K VEEK+GK + + EV V LSV ++
Sbjct: 1 MDIMRFVIVGRNIEVTDGLKEAVEEKLGK-LDRFFAPDTEVKVTLSVEKER-------QK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K ++R+E+ + +Y SIDLV +I+R+L+K K K D + F + +
Sbjct: 53 IEVTI-PVKGSIIRSEQVSNDMYVSIDLVEEVIERQLKKYKNKLIDKQQDAAAFAQEYID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ + V++DADV+ I+R K F++ P+ EA Q+E + H FY F N
Sbjct: 112 K---EYVDDDADVK------------IIRTKRFDVKPMDPEEACVQMELLGHSFYVFFNS 156
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
ET +IN+VYKRK YG+I P+
Sbjct: 157 ETEQINVVYKRKGNTYGLIEPE 178
>gi|386857075|ref|YP_006261252.1| Sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
gobiensis I-0]
gi|380000604|gb|AFD25794.1| Sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
gobiensis I-0]
Length = 187
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 113/194 (58%), Gaps = 13/194 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+++TD ++++VEEK+ + + ++S + + V L+VR + R R EV L
Sbjct: 6 LAGRNVDVTDAMRDYVEEKLTR-LDRYSDQITDARVTLTVR--DVRDSGRRNRVEVQLNV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
G++RAEE +YA+ID S +++R+LRK K R+MK + + P +
Sbjct: 63 PS-GIIRAEEHHADMYAAIDKASDVLERQLRKFK------TRYMK---QRQDAIPAPEPG 112
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ADV + +D + IVR K FE+ P++ +A Q+E +DHDFY F+N +G +
Sbjct: 113 PAEADVAAGLDDVSEFTPEIVRQKRFELRPMSPEDAAAQMEALDHDFYVFKNMVSGLTGV 172
Query: 283 VYKRKAGGYGVIIP 296
VY+R+ G YG+I P
Sbjct: 173 VYRRRDGHYGLIEP 186
>gi|303232830|ref|ZP_07319514.1| ribosomal subunit interface protein [Atopobium vaginae PB189-T1-4]
gi|302481020|gb|EFL44096.1| ribosomal subunit interface protein [Atopobium vaginae PB189-T1-4]
Length = 191
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 14/195 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+ + ++D ++ V+ K+G A+ DV L V ++ P + CEVT++
Sbjct: 6 ISGRKVSVSDALRERVQAKIGDALTVFDISPMTCDVVLRV--DKYHSNPERKTCEVTVYV 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ + VVR E ++ +YA+ID ++ + R+LRK K + D + + P+
Sbjct: 64 RDN-VVRVEASSDDMYAAIDDAAAKVTRQLRKYKTRIIDKKQRSQA--------PLVAAQ 114
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ E DD DE++VR K+ ++ P+T EA+ Q + + HDFY F N TG IN+
Sbjct: 115 TSNLGDLIENRDD---DELLVREKYVDLRPMTEEEALVQTDLIGHDFYVFENATTGLINV 171
Query: 283 VYKRKAGGYGVIIPK 297
VY R GGYG+I PK
Sbjct: 172 VYHRHNGGYGIIKPK 186
>gi|422343487|ref|ZP_16424415.1| hypothetical protein HMPREF9432_00475 [Selenomonas noxia F0398]
gi|355378794|gb|EHG25974.1| hypothetical protein HMPREF9432_00475 [Selenomonas noxia F0398]
Length = 181
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ + E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENIGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V E Q V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAV-ETFAQAV 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
EEDD + IV+ K F + P+ EAI Q+ ++H F+ FRN ETGE+N+
Sbjct: 116 P--------EEDDIYP---IVKTKRFALQPMDAQEAIMQMNLLNHHFFVFRNAETGEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y I
Sbjct: 165 VYGRHDGKYAAI 176
>gi|210630452|ref|ZP_03296455.1| hypothetical protein COLSTE_00339 [Collinsella stercoris DSM 13279]
gi|210160454|gb|EEA91425.1| ribosomal subunit interface protein [Collinsella stercoris DSM
13279]
Length = 194
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A+ DV L P I EVT+
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRYEKNPSNPNPAI--VEVTV-R 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K + D+ +G + +V PV V
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTRVVDN--RQQGLSAAEV-APVEPVA 118
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ + EEEDD +VR+K E+ P+T +A+ Q + + HDFY F N TG IN+
Sbjct: 119 DLADLLIPEEEDDQ-----LVRVKEIELTPMTEEQALVQTDLLGHDFYVFENSTTGLINV 173
Query: 283 VYKRKAGGYGVIIPK 297
VY RK GGYG+I PK
Sbjct: 174 VYHRKNGGYGIIKPK 188
>gi|435854881|ref|YP_007316200.1| ribosomal subunit interface protein [Halobacteroides halobius DSM
5150]
gi|433671292|gb|AGB42107.1| ribosomal subunit interface protein [Halobacteroides halobius DSM
5150]
Length = 181
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 116/200 (58%), Gaps = 23/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K +++GKN+E+TD ++N+VEEKVGK E++ ++S+ + K I EV
Sbjct: 1 MKFMLRGKNIEITDALRNYVEEKVGKVENYFDDEETEIEAQISL---DVEKEGHI--VEV 55
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F ++RAE+ +YASID V ++R++RK K +V+ +
Sbjct: 56 TVFVDGL-ILRAEKKTGDMYASIDGVIEKLERQIRKYK---------------TRVQRKI 99
Query: 219 TQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ EN ++S EED++ D IVR K F + P+ V EA+ Q++ +DHDF+ F N E
Sbjct: 100 KKEQENFRKNVIESREEDNDDDDPNIVRTKRFAVKPMDVKEAVMQMDLLDHDFFVFSNAE 159
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T E+N+VYKRK G YG+I P
Sbjct: 160 TKEVNVVYKRKNGDYGLIEP 179
>gi|313896903|ref|ZP_07830450.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974350|gb|EFR39818.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 137
str. F0430]
Length = 181
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E A SEE+D +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 109 ETFAAPVSEEDDIY----PVVKRKSFALQPMDVQEAIMQMNLLNHHFFVFRNAETNEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 165 VYSRNDGKYALI 176
>gi|373471398|ref|ZP_09562447.1| ribosomal subunit interface protein [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371760099|gb|EHO48802.1| ribosomal subunit interface protein [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 178
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 110/198 (55%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLHK-LGKYFTEETEAKITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK+ G++RAEE + +Y SID V II+R+++K K K D + F+ +RE
Sbjct: 53 TIPTKQ-GLIRAEEVSGDMYISIDKVEDIIERQIKKFKNKLVDKKQSSVSFSDFFIREDY 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ S+EED+ IV+ K F + P+ EA Q+E + HDFY FRN +
Sbjct: 112 SD---------SDEEDEI----KIVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNALSD 158
Query: 279 EINIVYKRKAGGYGVIIP 296
EI +VYKRK G YG+I P
Sbjct: 159 EICVVYKRKDGKYGIIEP 176
>gi|210620511|ref|ZP_03292087.1| hypothetical protein CLOHIR_00030 [Clostridium hiranonis DSM 13275]
gi|210155321|gb|EEA86327.1| hypothetical protein CLOHIR_00030 [Clostridium hiranonis DSM 13275]
Length = 194
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 112/196 (57%), Gaps = 15/196 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I GK +ELT +K+++E K+ K ++ + DV+++V KG + EV
Sbjct: 9 MKLTISGKQMELTQGIKDNIESKLSKL---DKYISPDTDVKVTVSAK---KGRH--KIEV 60
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E +Y +IDLV ++ +L+K K+K RH + ++ P
Sbjct: 61 TIAPKNGHVIRAEESQENLYPAIDLVVDKLKIQLKKYKDKM--QKRHQEN-KSIRFDSPE 117
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
ND+ ++ + ED +I R K + P++ EA+ Q+E V HDFY FRN+ET
Sbjct: 118 I----NDSILEEDLEDFEDELFIIKRRKRINIKPMSEEEAVLQMELVGHDFYIFRNDETD 173
Query: 279 EINIVYKRKAGGYGVI 294
EI +VYKRK GGYG+I
Sbjct: 174 EIALVYKRKNGGYGII 189
>gi|401565696|ref|ZP_10806518.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC6]
gi|400185548|gb|EJO19776.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC6]
Length = 181
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V V V
Sbjct: 58 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAVETFVQPV- 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 116 --------PEEDDVFP---VVKTKRFALQPMDVQEAIMQMNLLNHHFFVFRNAETEEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 165 VYSRNDGKYALI 176
>gi|404483358|ref|ZP_11018581.1| ribosomal subunit interface protein [Clostridiales bacterium
OBRC5-5]
gi|404343631|gb|EJZ69992.1| ribosomal subunit interface protein [Clostridiales bacterium
OBRC5-5]
Length = 178
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLQK-LEKYFTAETEARITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK G++RAEE ++ +Y SID V II+++++K K K D + F+ +
Sbjct: 53 TIPTK-QGLIRAEEVSQDMYVSIDKVQDIIEKQIKKFKNKLIDKKQAAMSFSDFFI---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
ND E+ED+ IV+ K F + P+ EA Q+E + HDFY FRN +
Sbjct: 108 -----NDEAAYGEDEDEI----KIVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNAISD 158
Query: 279 EINIVYKRKAGGYGVIIP 296
E+ +VYKRK G YG+I P
Sbjct: 159 EVCVVYKRKDGKYGIIEP 176
>gi|139439952|ref|ZP_01773289.1| Hypothetical protein COLAER_02327 [Collinsella aerofaciens ATCC
25986]
gi|133774718|gb|EBA38538.1| ribosomal subunit interface protein [Collinsella aerofaciens ATCC
25986]
Length = 194
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A+ VDV L P I EVT
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTVDVVLRYEKNPSNPNPAI--VEVTA-R 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K K D+ G + V PV +V
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLSADKVTRQLRKFKTKVVDN--RQGGASAADV-APVERV- 117
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E+ AD+ EEDD+ +VR K ++ P+T +A+ Q + + HDFY F N TG IN+
Sbjct: 118 EDLADLLLPEEDDDL----LVREKVIDVTPMTEEQALVQTDLLGHDFYVFENATTGLINV 173
Query: 283 VYKRKAGGYGVIIPK 297
VY RK GGYG+I P+
Sbjct: 174 VYHRKNGGYGIIKPR 188
>gi|292670013|ref|ZP_06603439.1| ribosomal subunit interface protein [Selenomonas noxia ATCC 43541]
gi|292648314|gb|EFF66286.1| ribosomal subunit interface protein [Selenomonas noxia ATCC 43541]
Length = 181
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ + E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENIGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V E Q V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAV-ETFAQAV 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
EEDD + IV+ K F + P+ EAI Q+ ++H F+ FRN ETGE+N+
Sbjct: 116 P--------EEDDIYP---IVKTKRFALQPMDAQEAIMQMNLLNHHFFVFRNAETGEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y I
Sbjct: 165 VYGRHDGKYASI 176
>gi|357059073|ref|ZP_09119918.1| hypothetical protein HMPREF9334_01635 [Selenomonas infelix ATCC
43532]
gi|355372981|gb|EHG20319.1| hypothetical protein HMPREF9334_01635 [Selenomonas infelix ATCC
43532]
Length = 181
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V V V
Sbjct: 58 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAVETFVQPV- 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 116 --------PEEDDVFP---VVKTKRFALQPMDVQEAIMQMNLLNHHFFVFRNAETEEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 165 VYGRNDGKYALI 176
>gi|229816737|ref|ZP_04447023.1| hypothetical protein COLINT_03784 [Collinsella intestinalis DSM
13280]
gi|229807713|gb|EEP43529.1| hypothetical protein COLINT_03784 [Collinsella intestinalis DSM
13280]
Length = 194
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A+ DV L P I EVT+
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEALKVFDIEPMTADVVLRYEKNPSNPNPAI--VEVTV-R 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K + D+ +G + +V PV V
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLAAEKVTRQLRKFKTRVVDN--RQQGLSAAEV-APVEPVA 118
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ + E+EDD +VR+K E+ P+T EA+ Q + + HDFY F N TG +N+
Sbjct: 119 DLADLLLPEDEDDQ-----LVRVKEVELTPMTDEEALVQTDLIGHDFYVFENSVTGLVNV 173
Query: 283 VYKRKAGGYGVIIPK 297
VY RK GGYG+I PK
Sbjct: 174 VYHRKNGGYGIIKPK 188
>gi|320530493|ref|ZP_08031551.1| ribosomal subunit interface protein [Selenomonas artemidis F0399]
gi|402302460|ref|ZP_10821572.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC9]
gi|320137326|gb|EFW29250.1| ribosomal subunit interface protein [Selenomonas artemidis F0399]
gi|400380527|gb|EJP33344.1| ribosomal subunit interface protein [Selenomonas sp. FOBRC9]
Length = 181
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E A EEDD + +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 109 ETFA-APVPEEDDIYP---VVKRKSFALQPMDVQEAIMQMNLLNHHFFVFRNAETNEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 165 VYSRNDGKYALI 176
>gi|428176303|gb|EKX45188.1| hypothetical protein GUITHDRAFT_108830 [Guillardia theta CCMP2712]
Length = 204
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 113/211 (53%), Gaps = 25/211 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR--- 155
+ + I G N+ELT +K ++ EK+ + K LV D L+V K P +
Sbjct: 7 IPITISGNNVELTPALKQYINEKLTNTLSKVGRLVTRCDAHLTV-----DKNPSVENNAN 61
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK----GFNR 211
EV + + K V+RA + +YASID V+ ++RKLRK KE+ D R K GF+
Sbjct: 62 FEVVV-SVKGTVMRASKSTHDMYASIDAVADSVKRKLRKYKERIIDAHRQGKPEAMGFDE 120
Query: 212 LKVR--EPVTQVV---ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVD 266
+++ + TQ V EN V D +++ K F M P++V +A+ L+ ++
Sbjct: 121 EEIQGFKDFTQEVAKMENSLPVPP-------ADMSLMKKKTFPMEPISVEDAVLCLDYIE 173
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
HDFY F+N+E G+I +VYKR GG G+I P+
Sbjct: 174 HDFYVFKNKENGKIAVVYKRNHGGVGLIEPQ 204
>gi|355575226|ref|ZP_09044793.1| hypothetical protein HMPREF1008_00770 [Olsenella sp. oral taxon 809
str. F0356]
gi|354817870|gb|EHF02365.1| hypothetical protein HMPREF1008_00770 [Olsenella sp. oral taxon 809
str. F0356]
Length = 195
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 13/199 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
V + I G+ + ++D +++HV +KVG+++ DV L V P R CE+
Sbjct: 2 VDIKISGRKVSVSDGMRDHVLDKVGESLKVFDIQPMSCDVVLRVDKNP--SNPDRRTCEI 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F + + VVR E + +YA+ID + + R+LRK K + D K ++ +RE V
Sbjct: 60 TVFVRDN-VVRVEASNQDMYAAIDDAADKVTRQLRKYKTRVIDR----KQRSQQTIREGV 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + D ++ EE DD +VR K+ ++ P+T EA+ Q + + HDFY F N TG
Sbjct: 115 P-LGDLDDLIEGEELDDQ-----LVREKYVDLTPMTEEEALVQTDLLGHDFYVFENATTG 168
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N++Y R GGYG+I PK
Sbjct: 169 LVNVIYHRHNGGYGIIKPK 187
>gi|108804458|ref|YP_644395.1| sigma 54 modulation protein/30S ribosomal protein S30P [Rubrobacter
xylanophilus DSM 9941]
gi|108765701|gb|ABG04583.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Rubrobacter xylanophilus DSM 9941]
Length = 189
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 25/205 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
++++++G+N+ +TD+++ + EKV + V +V L + P I
Sbjct: 1 MEIVVKGRNIPVTDSLERYAVEKVERVRKFFDDDRSVARAEVELI-----HERNPSIAAS 55
Query: 157 EV---TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNR 211
EV TLF V++A E +E +YASID +S ++R++++ + ++ D HGR +K
Sbjct: 56 EVAETTLFING-AVLKAREASEDMYASIDRMSDKLERQVKRYRGRQVDRWHGR-LKNHEG 113
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ EP V E + D++ IVR K F+M P++ EA+ Q+E +DHDF+
Sbjct: 114 ARA-EPQPFVAEEEEDIEPR----------IVRTKQFQMKPMSAEEAVLQMELLDHDFFV 162
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
F N +TG+IN+VY+R+ G YG+I P
Sbjct: 163 FTNADTGDINVVYRRRDGNYGLIEP 187
>gi|317490374|ref|ZP_07948858.1| sigma 54 modulation protein/S30EA ribosomal protein [Eggerthella
sp. 1_3_56FAA]
gi|316910509|gb|EFV32134.1| sigma 54 modulation protein/S30EA ribosomal protein [Eggerthella
sp. 1_3_56FAA]
Length = 193
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ + G+ + +TD ++ + EEK+G + V+ LV EV + + PR CEV
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEVVLFVEKNPA----NPRPAVCEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVREP 217
TL TK H ++R EE E +YA+ID+ ++ + R+LRK K K D R ++ + +++ EP
Sbjct: 59 TLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAADETIRMAEP 115
Query: 218 VTQ-VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
++ D +Q DD +VR+K E PLT EA+ +++ + HDF+ + + +
Sbjct: 116 AAAGELDVDGLMQELAADDE-----VVRVKTIEFEPLTEEEALVKIDLLGHDFFAYTDRD 170
Query: 277 TGEINIVYKRKAGGYGVI 294
+G +N++Y+R GGYG++
Sbjct: 171 SGMVNVLYRRDDGGYGLL 188
>gi|334126607|ref|ZP_08500556.1| ribosomal subunit interface protein [Centipeda periodontii DSM
2778]
gi|333391278|gb|EGK62396.1| ribosomal subunit interface protein [Centipeda periodontii DSM
2778]
Length = 181
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V ++ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGDISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF E V V
Sbjct: 58 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKA----EAVETFV 112
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ + EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 113 Q-----PTPEEDDVFP---VVKTKRFALQPMDVQEAIMQMNLLNHRFFVFRNAETEEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 165 VYSRNDGKYALI 176
>gi|408356026|ref|YP_006844557.1| ribosome-associated protein [Amphibacillus xylanus NBRC 15112]
gi|407726797|dbj|BAM46795.1| putative ribosome-associated protein [Amphibacillus xylanus NBRC
15112]
Length = 182
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 109/195 (55%), Gaps = 19/195 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK-AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+TD +K +VE+KVGK S +V V LSV E ++ EVT+
Sbjct: 5 IRGENVEVTDAIKAYVEKKVGKLERYFESSPTSDVKVNLSVYNEE-------QKIEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ ++RAEE E +YA+IDLV ++R++RK K K + R KG + E T
Sbjct: 57 PMTNLLLRAEEKHEDLYAAIDLVVDKLERQIRKHKTKINRRTRQ-KGNAKYMFAELETNS 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
VE + D S E IVR K F + P+ EAI Q++ + HDF+ F N +TG+ +
Sbjct: 116 VEQEDDGDSIE---------IVRTKRFNLKPMDSEEAILQMDMLGHDFFVFTNADTGDTS 166
Query: 282 IVYKRKAGGYGVIIP 296
+VY+R G YG+I P
Sbjct: 167 VVYRRHDGKYGLIEP 181
>gi|429736735|ref|ZP_19270622.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154290|gb|EKX97027.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 138
str. F0429]
Length = 205
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ + ++ V LSV G + + EVT
Sbjct: 30 IRGKNVEVTPALRDYVEKRVGK-ITKYFENIGDISVLLSVEG-------KHHKVEVTAPI 81
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF V V V
Sbjct: 82 VRGVLLRGEERSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFKAEAVETFVQPV- 139
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
EEDD F +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 140 --------PEEDDIFP---VVKTKRFTLQPMDVQEAIMQMNLLNHHFFVFRNAETEEVNV 188
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 189 VYSRNDGKYALI 200
>gi|402311610|ref|ZP_10830549.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
ICM7]
gi|400371602|gb|EJP24558.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
ICM7]
Length = 178
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 107/198 (54%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EV
Sbjct: 1 MRYTITGRNIEITDGLKKAVEEKLQK-LEKYFTAETEARITLSVQ-------KEAHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ TK G++RAEE ++ +Y SID V II+++++K K K D + F
Sbjct: 53 TIPTK-QGLIRAEEVSQDMYVSIDKVQDIIEKQIKKFKNKLIDKKQAAMSF--------- 102
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T ND ++ED+ IV+ K F + P+ EA Q+E + HDFY FRN +
Sbjct: 103 TDFFINDEAAYGDDEDEI----KIVKTKRFSIKPMDPEEACLQMELLGHDFYVFRNAISD 158
Query: 279 EINIVYKRKAGGYGVIIP 296
E+ +VYKRK G YG+I P
Sbjct: 159 EVCVVYKRKDGKYGIIEP 176
>gi|325833624|ref|ZP_08166073.1| ribosomal subunit interface protein [Eggerthella sp. HGA1]
gi|325485548|gb|EGC88017.1| ribosomal subunit interface protein [Eggerthella sp. HGA1]
Length = 193
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 113/198 (57%), Gaps = 16/198 (8%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ + G+ + +TD ++ + EEK+G + V+ LV EV + + PR CEV
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEVVLFVEKNPA----NPRPAVCEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVREP 217
TL TK H ++R EE E +YA+ID+ ++ + R+LRK K K D R ++ + +++ EP
Sbjct: 59 TLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAADETIRMAEP 115
Query: 218 VTQ-VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
++ D +Q DD +VR+K E PLT EA+ +++ + HDF+ + + +
Sbjct: 116 AAAGELDVDGLMQELAADDE-----VVRVKTIEFEPLTEEEALVKIDLLGHDFFAYTDRD 170
Query: 277 TGEINIVYKRKAGGYGVI 294
+G +N++Y+R GGYG++
Sbjct: 171 SGLVNVLYRRDDGGYGLL 188
>gi|227872848|ref|ZP_03991159.1| ribosome-associated inhibitor A [Oribacterium sinus F0268]
gi|227841318|gb|EEJ51637.1| ribosome-associated inhibitor A [Oribacterium sinus F0268]
Length = 176
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 110/199 (55%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I G+NL LTD +KN VE+K+GK + K +V LS + +++ EV
Sbjct: 1 MKITITGRNLSLTDGLKNGVEKKLGK-LDKFFQAETPCNVTLSTQKD-------MQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE +Y SIDLV +++R++RK K K + F+
Sbjct: 53 TIPVK-GSVIRAEEATPDMYQSIDLVVDVLERQIRKYKNKLIQRHQAASDFS-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ +E + Q EEE IVR K ++ P+T EA Q+E + H F+ F++ TG
Sbjct: 104 SEFIE-EKPAQDEEEIK------IVRTKHIDLKPMTAEEACLQMELLGHSFFVFQDGNTG 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRKA YG+I P+
Sbjct: 157 KVNVVYKRKANSYGLIEPE 175
>gi|153854571|ref|ZP_01995841.1| hypothetical protein DORLON_01836 [Dorea longicatena DSM 13814]
gi|149752880|gb|EDM62811.1| ribosomal subunit interface protein [Dorea longicatena DSM 13814]
Length = 178
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T ++ VE K+GK + ++ E+ V LSV+ G ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLREAVESKLGK-LGRYFTPNTEIHVTLSVQKGH-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G+VR+E+++ +Y SIDLV +I+R+LRK K K R +G N +
Sbjct: 53 TI-PVKGGLVRSEQESSDMYVSIDLVEEVIERQLRKYKNKLV--AREQEGGNFKQEFFDA 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+E+D +++ IVR K F P+ +A Q+E + HDFY F N E+
Sbjct: 110 EDNIEDDGEIK------------IVRTKKFGFKPMYPEDACVQMELLGHDFYVFCNAESD 157
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VY+RK G +G+I P+
Sbjct: 158 EVNVVYRRKNGTFGLIEPE 176
>gi|188586831|ref|YP_001918376.1| sigma 54 modulation protein, SSU ribosomal protein S30P
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351518|gb|ACB85788.1| sigma 54 modulation protein, SSU ribosomal protein S30P
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 178
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 24/200 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I GKN+++T+ +K H++ + K + KH E V LSV E
Sbjct: 2 SLKLTISGKNIDVTNALKEHIQRRFAK-LDKHFDDTVEAQVTLSVIKDN-------HNVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F +VR E+ +YAS+D V ++R+++K K K NR K+R+
Sbjct: 54 ATMFLNGGMLVRGEQSTGDMYASVDQVIDKVERQIKKHKTK----------INR-KLRQS 102
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+++ A+ E +D IV+ K F + P+T EA+ Q+E + HDF+ FRN ET
Sbjct: 103 GGSLLKEGAESTEEGKDPE-----IVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAET 157
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VY+RK G YG I P+
Sbjct: 158 EEVNVVYRRKDGNYGQIEPE 177
>gi|427406422|ref|ZP_18896627.1| ribosomal subunit interface protein [Selenomonas sp. F0473]
gi|425708241|gb|EKU71281.1| ribosomal subunit interface protein [Selenomonas sp. F0473]
Length = 181
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 109/192 (56%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFENVGEISVLLSVEG-------KHHKVEVTAPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K RH GF + V
Sbjct: 58 VRGVLLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLERRFRH-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E A EEDD + +V+ K F + P+ V EAI Q+ ++H F+ FRN ET E+N+
Sbjct: 109 ETFA-APVPEEDDIYP---VVKRKSFMLHPMDVQEAIMQMNLLNHHFFLFRNAETNEVNV 164
Query: 283 VYKRKAGGYGVI 294
VY R G Y +I
Sbjct: 165 VYGRNDGKYALI 176
>gi|258512514|ref|YP_003185948.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257479240|gb|ACV59559.1| sigma 54 modulation protein/ribosomal protein S30EA
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 180
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 114/200 (57%), Gaps = 22/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K + G N+ +T ++++V++K+ + + RE D ++ V G R+ E+
Sbjct: 1 MKAQVHGDNIAVTAALQDYVDKKIARLT---RYFDREADKQIYVTMAVEGLDHRV---EM 54
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F +GV+ RAEE + +YASIDL + ++ ++ + KEK + R + R P
Sbjct: 55 TVFV--NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLN---------RRFRARGP 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q+ D D +E +D+ V VR+K F + P+ V EA+ Q+E + HDF+ F N ET
Sbjct: 104 RPQLKAADRDAVAETDDEIKV----VRVKRFPIKPMDVEEAVLQMELLGHDFFVFMNAET 159
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VY+R++G YG+I P+
Sbjct: 160 EEVNVVYRRRSGDYGLIEPQ 179
>gi|257792504|ref|YP_003183110.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Eggerthella lenta DSM 2243]
gi|257476401|gb|ACV56721.1| sigma 54 modulation protein/ribosomal protein S30EA [Eggerthella
lenta DSM 2243]
Length = 191
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 111/196 (56%), Gaps = 14/196 (7%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ + G+ + +TD ++ + EEK+G + V+ LV E+ + + PR CEV
Sbjct: 3 ITVTGRKMPVTDALREYAEEKIGNSMKVMDIDPLVAEIVLFVEKNPA----NPRPAVCEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL TK H ++R EE E +YA+ID+ ++ + R+LRK K K D R ++ + EP
Sbjct: 59 TLRTKGH-IIRVEEHEEDMYAAIDVAAAKVVRQLRKYKTKVVD--RKLRAADETIRIEP- 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ E D D +E D+ +VR+K E PLT EA+ +++ + HDF+ + + ++G
Sbjct: 115 SAAGELDVDGLMQE----LSDDEVVRVKTIEFEPLTEEEALVKIDLLGHDFFAYTDRDSG 170
Query: 279 EINIVYKRKAGGYGVI 294
+N++Y+R GGYG++
Sbjct: 171 LVNVLYRRDDGGYGLL 186
>gi|238916329|ref|YP_002929846.1| sigma-54 modulation protein [Eubacterium eligens ATCC 27750]
gi|238871689|gb|ACR71399.1| putative sigma-54 modulation protein [Eubacterium eligens ATCC
27750]
Length = 175
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II G+N+++T+ +K+ VEEK+GK + + EV+V LSV ++ EV
Sbjct: 1 MRFIITGRNIDITEGLKSAVEEKLGK-LDRFFAPETEVNVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+L+K K K D ++ F +
Sbjct: 53 TIPVKGN-IIRSEQVSSDMYVSIDLVEEVIERQLKKYKNKIVDKQQNAAAFAQ------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ VE D D DEV I+R K F + P+ EA Q+E + H+FY F N ET
Sbjct: 105 -EFVEKDYDD----------DEVKIIRTKRFGIKPMDPEEACVQMELLGHNFYVFFNSET 153
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 154 EEVNVVYKRKGNTYGLIEPE 173
>gi|291522078|emb|CBK80371.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Coprococcus
catus GD/7]
Length = 175
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 27/201 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II G+N+ +T+ +K + +K+GK + K+ E+ V LSV ++ EV
Sbjct: 1 MRYIISGRNITVTEGLKEAIYDKLGK-LEKYFTPETEIIVTLSVEKQR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H +RAE+ ++ +Y SIDLV II R+LRK K + ++ K F +P
Sbjct: 53 TVPVKGH-TIRAEQSSDNMYVSIDLVEEIIVRQLRKYKTRIANQQNSRKNF------QPA 105
Query: 219 TQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+E D D +EV IVR K F + PL EA ++E + H F+ FRN +T
Sbjct: 106 YLEMETDGD-----------EEVKIVRTKKFAIKPLDPEEACVEMELLGHSFFVFRNAQT 154
Query: 278 GEINIVYKRKAGGYGVIIPKG 298
E+N+VYKRK YG+I P+
Sbjct: 155 NEVNVVYKRKGNTYGLIEPEN 175
>gi|346310917|ref|ZP_08852929.1| hypothetical protein HMPREF9452_00798 [Collinsella tanakaei YIT
12063]
gi|345897165|gb|EGX67096.1| hypothetical protein HMPREF9452_00798 [Collinsella tanakaei YIT
12063]
Length = 195
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 12/196 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ +TD ++ HV+EK+G+A VDV L P I V
Sbjct: 5 VSGRKTTVTDALRAHVDEKIGEACKVFDIEPMTVDVVLRYEKNPSNPNPAIVEATVR--- 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+R E +YA+IDL + + R+LRK K K D+ +G + +V PV +V
Sbjct: 62 ARGSVIRVAEHGADMYAAIDLAADKVTRQLRKFKTKVVDN--RQQGLSAAEV-APVPRVT 118
Query: 223 E-NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ D + +EED +VR K+ E+ P+T +A+ Q++ + HDFY F + TG N
Sbjct: 119 DLADLLIPEDEEDGQ-----LVREKYIELTPMTEEQALVQIDLLGHDFYVFEDAVTGLTN 173
Query: 282 IVYKRKAGGYGVIIPK 297
+VY RK GGYG+I PK
Sbjct: 174 VVYHRKNGGYGIIKPK 189
>gi|56554777|gb|AAV97959.1| chloroplast-specific ribosome-associated protein [Volvox carteri f.
nagariensis]
Length = 232
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK-GPRIRR 155
S+V++IIQG+ L +T+ +K +VEEKV KA+ +H ++EVDV LS RGG+ G G + ++
Sbjct: 72 STVRIIIQGRKLPVTNAIKEYVEEKVAKAIQNFAHTLKEVDVTLSARGGDTGTHGKKEQK 131
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR 204
+VT+FT ++GVVR E+ +YA+IDLV I+ KL ++KEK G+
Sbjct: 132 VDVTIFTLRNGVVRVEDRESNLYAAIDLVCDKIRSKLTRVKEKAITKGK 180
>gi|410584260|ref|ZP_11321365.1| ribosome-associated protein Y (PSrp-1) [Thermaerobacter
subterraneus DSM 13965]
gi|410505122|gb|EKP94632.1| ribosome-associated protein Y (PSrp-1) [Thermaerobacter
subterraneus DSM 13965]
Length = 187
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 112/201 (55%), Gaps = 17/201 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ + I GKN+++T+ +K + KVGK + + V LS+ R R E
Sbjct: 1 MNIAIYGKNIDVTEALKEYARRKVGKVARYFNGEPLQAQVTLSIE--------RDRHIVE 52
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ +G+ +RAEE+++ +YASID+V ++R++RK K + + R ++ V E
Sbjct: 53 VTIPVPTNGLLIRAEEESDDMYASIDMVVDKLERQIRKFKTRLNRKARRLEATTGQVVTE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ V+ A + EEE +VR K F + P+TV EAI Q+ + HDF+ F N
Sbjct: 113 -LDTAVDEPAWPEGEEEGR------VVRTKRFAVKPMTVDEAILQMNLLGHDFFVFANAT 165
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
TG++N++Y+R+ G YG+I P+
Sbjct: 166 TGQVNVLYRRRDGQYGLIEPE 186
>gi|336429452|ref|ZP_08609418.1| hypothetical protein HMPREF0994_05424 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336002763|gb|EGN32865.1| hypothetical protein HMPREF0994_05424 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 178
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 25/202 (12%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+ S+K II GKN+E+T +++ VE K+GK + K+ EV V LSV ++
Sbjct: 1 MISMKFIISGKNIEITQGLRSAVESKIGK-LEKYFTQETEVLVTLSVEKDR-------QK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K ++R+E+ + +Y SIDLV +I+R+L+K K K D +H G N +
Sbjct: 53 IEVTI-PVKGSIIRSEQTSNDMYVSIDLVEEVIERQLKKYKNKIMD--KHQSGGNFQQA- 108
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+E D EEE+ IVR K F++ P+ +A Q+E + H+F+ F N
Sbjct: 109 -----FIEKDY---PEEEEVQ-----IVRTKKFDIKPMYPEDACIQMELLGHNFFVFFNA 155
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
ET ++N+VYKRK YG+I P+
Sbjct: 156 ETDQVNVVYKRKGNTYGLIEPE 177
>gi|167761274|ref|ZP_02433401.1| hypothetical protein CLOSCI_03679 [Clostridium scindens ATCC 35704]
gi|336422832|ref|ZP_08602973.1| hypothetical protein HMPREF0993_02350 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167660940|gb|EDS05070.1| ribosomal subunit interface protein [Clostridium scindens ATCC
35704]
gi|336007173|gb|EGN37199.1| hypothetical protein HMPREF0993_02350 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 179
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 22/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K VE K+GK + ++ E+ V LSV+ ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLKEAVENKLGK-LERYFTPDTEIHVTLSVQRER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G++R+E+++ +Y SIDLV +I+R+LRK K K RH +G K
Sbjct: 53 TI-PVKGGIIRSEQESSDMYVSIDLVEEVIERQLRKYKNKLI--ARHQEGSGNFK----- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ D EDD + IVR K F P+ +A Q+E + HDF+ F N ET
Sbjct: 105 ----QEFFDSGERSEDDGEIK--IVRTKKFGFKPMYPEDACVQMELLGHDFFVFCNAETD 158
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VY+RK G +G+I P+
Sbjct: 159 EVNVVYRRKNGTFGLIEPE 177
>gi|328951064|ref|YP_004368399.1| sigma 54 modulation protein/ribosomal protein S30EA [Marinithermus
hydrothermalis DSM 14884]
gi|328451388|gb|AEB12289.1| sigma 54 modulation protein/ribosomal protein S30EA [Marinithermus
hydrothermalis DSM 14884]
Length = 183
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 22/194 (11%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
G+N+E+T+ +KN++++KV + H+V + V LSV G P + R F
Sbjct: 8 GRNVEVTEALKNYIDKKVARLDRYFDHIV-DAKVVLSVAGS-----PHVERRAKAEFQLN 61
Query: 165 --HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
G++R EE +YA+ID I++++L++ K RL R T
Sbjct: 62 VPGGIIRVEESDADMYAAIDRGVEILEKQLKRFK-------------GRLMNRRRATNAK 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
V S E ++ E IVR+K FEM P+T +A Q+E + HDF+ FRN ET EIN+
Sbjct: 109 AAVPPVPSSETEEEPAPE-IVRVKRFEMKPMTPEDAAIQMEALGHDFFVFRNAETDEINV 167
Query: 283 VYKRKAGGYGVIIP 296
+Y+R+ G YG+I P
Sbjct: 168 IYRRRDGNYGLIEP 181
>gi|260438127|ref|ZP_05791943.1| ribosomal subunit interface protein [Butyrivibrio crossotus DSM
2876]
gi|292809451|gb|EFF68656.1| ribosomal subunit interface protein [Butyrivibrio crossotus DSM
2876]
Length = 176
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +++ VEEK+GK + K+ + +V LSV ++ EV
Sbjct: 1 MKFIIMGKNIEVTAGLRSAVEEKIGK-LDKYFNDEVTANVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++RAEE + +Y SIDLV II+R++R+ K + + + F++ + +
Sbjct: 53 TIPIKGN-IIRAEEVSNDMYVSIDLVEEIIERQMRRYKTRLVNAKQAAAEFSKTYIEDDY 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E++ DV+ IVR K F + P+ EA Q+E + H+FY F N ET
Sbjct: 112 ----EDEPDVK------------IVRTKKFGVKPMNPEEACVQMELLQHNFYVFLNSETD 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 156 EVNVVYKRKNNTYGLIEPE 174
>gi|403746668|ref|ZP_10955061.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Alicyclobacillus hesperidum URH17-3-68]
gi|403120527|gb|EJY54899.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Alicyclobacillus hesperidum URH17-3-68]
Length = 181
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 27/204 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAV-LKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K+ + G N+ +T ++ +V++K+G+ +++ V ++V G R E
Sbjct: 1 MKIQVHGDNISVTSALQEYVDKKIGRLTRYFEGEADKQIHVTMAVEGT-------YHRVE 53
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ HGV+ RAEE ++ +YASIDLV+ ++ ++ + KEK + R + R
Sbjct: 54 MTVHV--HGVIFRAEEKSQDMYASIDLVTDKLEEQVHRYKEKLN---------RRFRARG 102
Query: 217 PVTQVVEND--ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
TQ+ + D EED +VR+K F + P+ V EAI Q++ + HDF+ F N
Sbjct: 103 LRTQIRQRGFAQDALDAEEDLR-----VVRVKRFPIKPMDVEEAIMQMDLLGHDFFVFTN 157
Query: 275 EETGEINIVYKRKAGGYGVIIPKG 298
ET E+N+VY+RK G YG+I P+G
Sbjct: 158 AETEEVNVVYRRKRGDYGLIEPQG 181
>gi|218291023|ref|ZP_03495064.1| sigma 54 modulation protein/ribosomal protein S30EA
[Alicyclobacillus acidocaldarius LAA1]
gi|218239041|gb|EED06246.1| sigma 54 modulation protein/ribosomal protein S30EA
[Alicyclobacillus acidocaldarius LAA1]
Length = 180
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 113/200 (56%), Gaps = 22/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K + G N+ +T ++ +V++K+ + + RE D ++ V G R+ E+
Sbjct: 1 MKAQVHGDNIAVTAALQEYVDKKIARLT---RYFDREADKQIYVTMAVEGLDHRV---EM 54
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F +GV+ RAEE + +YASIDL + ++ ++ + KEK + R + R P
Sbjct: 55 TVFV--NGVIFRAEEKSPDMYASIDLATDKLEEQIHRYKEKLN---------RRFRARGP 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q+ D D +E +D+ V VR+K F + P+ V EA+ Q+E + HDF+ F N ET
Sbjct: 104 RPQLKAADRDAVAETDDEIKV----VRVKRFPIKPMDVEEAVLQMELLGHDFFVFMNAET 159
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VY+R++G YG+I P+
Sbjct: 160 EEVNVVYRRRSGDYGLIEPQ 179
>gi|373107680|ref|ZP_09521973.1| ribosomal subunit interface protein [Stomatobaculum longum]
gi|371650638|gb|EHO16091.1| ribosomal subunit interface protein [Stomatobaculum longum]
Length = 176
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N++L D +KN V +K+GK + K+ E V LS R K I EV
Sbjct: 1 MRITISGRNVDLGDRLKNQVNKKLGK-LEKYFAPDTEARVVLSRR-----KDAEI--IEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T+ +G +RAEE + +ASIDL I+R+++K K K +D + F+ L +
Sbjct: 53 TIPTR-NGFIRAEEATDDFFASIDLAEETIERQIKKYKTKLTDKKQSALAFSDLFL---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E ED+ D IV+ K FE+ P+T EA Q+E + H F+ F N ++G
Sbjct: 108 -----------DETEDETEADLRIVKNKKFELHPMTPEEACLQMELLGHAFFVFLNGDSG 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
+ +VYKR+ G YG+I P+
Sbjct: 157 NVEVVYKRRDGSYGLIEPR 175
>gi|407795335|ref|ZP_11142294.1| putative ribosomal subunit interface protein [Salimicrobium sp.
MJ3]
gi|407020220|gb|EKE32933.1| putative ribosomal subunit interface protein [Salimicrobium sp.
MJ3]
Length = 183
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 108/201 (53%), Gaps = 34/201 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--------EVDVRLSVRGGEFGKGPRIR 154
I+G+NLE+TD+++++VE+KV K L R EV V LSV E +
Sbjct: 6 IRGENLEVTDSIRDYVEKKVTK-------LERYFDTPPSSEVHVNLSVYNKE-------Q 51
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
EVT+ K+ ++RAEE +YA++DLV ++R++RK K K + R
Sbjct: 52 TIEVTV-PMKNLLLRAEEHNADLYAAVDLVVDKLERQIRKHKTKVNRKARQEGA------ 104
Query: 215 REPVTQVVENDADVQSE-EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
P E + D QS EEDD V IVR K F++ P+ EA Q++ + H FY F
Sbjct: 105 --PKHVFAEMERDAQSRLEEDDEEVK--IVRTKRFDLKPMASEEAALQMDMLGHSFYVFT 160
Query: 274 NEETGEINIVYKRKAGGYGVI 294
N ET E NIVYKR+ G YG+I
Sbjct: 161 NAETDETNIVYKRRDGRYGLI 181
>gi|260587043|ref|ZP_05852956.1| ribosomal subunit interface protein [Blautia hansenii DSM 20583]
gi|331082815|ref|ZP_08331937.1| hypothetical protein HMPREF0992_00861 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542533|gb|EEX23102.1| ribosomal subunit interface protein [Blautia hansenii DSM 20583]
gi|330400144|gb|EGG79793.1| hypothetical protein HMPREF0992_00861 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 176
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +++ VE+K+GK + K+ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIEVTQGLRSAVEDKLGK-LEKYFTSDTEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV II+R+LRK K K D + GF +P
Sbjct: 53 TIPVKGN-IIRSEQVSSDMYVSIDLVEEIIERQLRKYKNKIIDK-KQSAGF------QP- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ VE D EED N + I+R K F P+ +A Q+E + H+F+ F N ET
Sbjct: 104 -EFVEKDY-----EEDTNEIK--IIRTKKFGFKPMYPEDACVQMELLGHNFFVFLNAETE 155
Query: 279 EINIVYKRKAGGYGVIIP 296
E+N+VYKRK YG+I P
Sbjct: 156 EVNVVYKRKGNTYGLIEP 173
>gi|295106613|emb|CBL04156.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[Gordonibacter pamelaeae 7-10-1-b]
Length = 182
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 15/187 (8%)
Query: 110 LTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV 167
+TD ++ + EEK+G + V+ LV EV + + PR CEVTL TK H +
Sbjct: 3 VTDALRQYAEEKIGNSMKVMDIDPLVAEVVLYVEKNPA----NPRPACCEVTLRTKGH-I 57
Query: 168 VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD 227
+R EE E +YA+ID+ ++ + R+LRK K K D R ++ + EPV D D
Sbjct: 58 IRVEECEEDMYAAIDVAAAKVVRQLRKYKTKVID--RKLRAVDETIRTEPVPT---KDLD 112
Query: 228 VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 287
EE DE +VR+K E PLT EA+ +++ + HDF+ + + +T +N++Y+R
Sbjct: 113 QLMEE---LAADEEVVRVKEIEFEPLTEEEALVKIDLLGHDFFAYTDRDTSMVNVLYRRD 169
Query: 288 AGGYGVI 294
GGYG++
Sbjct: 170 DGGYGLL 176
>gi|126700060|ref|YP_001088957.1| ribosome-associated sigma 54 modulation protein [Clostridium
difficile 630]
gi|254976037|ref|ZP_05272509.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-66c26]
gi|255093425|ref|ZP_05322903.1| putative sigma 54 modulation protein [Clostridium difficile CIP
107932]
gi|255101603|ref|ZP_05330580.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-63q42]
gi|255315170|ref|ZP_05356753.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-76w55]
gi|255517839|ref|ZP_05385515.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-97b34]
gi|255650955|ref|ZP_05397857.1| putative sigma 54 modulation protein [Clostridium difficile
QCD-37x79]
gi|260684024|ref|YP_003215309.1| sigma 54 modulation protein [Clostridium difficile CD196]
gi|260687684|ref|YP_003218818.1| sigma 54 modulation protein [Clostridium difficile R20291]
gi|384361667|ref|YP_006199519.1| sigma 54 modulation protein [Clostridium difficile BI1]
gi|423084185|ref|ZP_17072690.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
gi|423086758|ref|ZP_17075149.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|423092472|ref|ZP_17080276.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
gi|115251497|emb|CAJ69330.1| putative ribosome-associated sigma 54 modulation protein
[Clostridium difficile 630]
gi|260210187|emb|CBA64388.1| putative sigma 54 modulation protein [Clostridium difficile CD196]
gi|260213701|emb|CBE05578.1| putative sigma 54 modulation protein [Clostridium difficile R20291]
gi|357543232|gb|EHJ25265.1| ribosomal subunit interface protein [Clostridium difficile
002-P50-2011]
gi|357545867|gb|EHJ27830.1| ribosomal subunit interface protein [Clostridium difficile
050-P50-2011]
gi|357553974|gb|EHJ35710.1| ribosomal subunit interface protein [Clostridium difficile
70-100-2010]
Length = 187
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 116/197 (58%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I+ G+ ++LTD +K +V+ K+ + +L E +V+++V K R ++ EV
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRL---EKYLDPESEVKVTVSA----KKDR-QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ + +YA+ID+V + R++ K K K D ++ K +R
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDKVQNNKS-----IRFEN 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIV-RMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
++N ++ + DD + +++ R K F + P++ EAI Q+E V H+FY FRN++
Sbjct: 108 LDFIDNSSEFDDYDYDDEEDENIVIERRKKFNVKPMSSEEAILQMELVGHNFYMFRNQDN 167
Query: 278 GEINIVYKRKAGGYGVI 294
EINIVYKRKAGGYG+I
Sbjct: 168 FEINIVYKRKAGGYGLI 184
>gi|302391069|ref|YP_003826889.1| 30S ribosomal protein S30P;sigma 54 modulation protein
[Acetohalobium arabaticum DSM 5501]
gi|302203146|gb|ADL11824.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Acetohalobium arabaticum DSM 5501]
Length = 183
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 116/199 (58%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II+GKN+E+TD +K + EEK+GK + ++ ++ R+S+ E K I EV
Sbjct: 1 MKFIIRGKNIEITDALKQYAEEKIGK-IERYFDDDPPIEARISL---EVEKERHI--VEV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T++ G+ +R EE +YASID V ++R++ K K K NR K++E
Sbjct: 55 TVYI--DGLTIRGEEVTGDMYASIDGVIEKLERQIHKYKTK----------INR-KIKEE 101
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
++ N A+ +ED+ + IVR K F M P+ V EA+ Q+E +DHDF+ F N ++
Sbjct: 102 RKELKANLAESNLLDEDEEEDEPKIVRTKRFAMKPMNVEEAVMQMELLDHDFFVFFNSDS 161
Query: 278 GEINIVYKRKAGGYGVIIP 296
E+N+VYKR AG YG+I P
Sbjct: 162 EEVNVVYKRNAGDYGLIEP 180
>gi|336436547|ref|ZP_08616259.1| hypothetical protein HMPREF0988_01844 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336007412|gb|EGN37437.1| hypothetical protein HMPREF0988_01844 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 185
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 28/207 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +K+ VE+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIEVTPGLKSTVEQKLGK-LERYFTPETEIIVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--- 215
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K N+L R
Sbjct: 53 TIPVKGN-IIRSEQTSSDMYVSIDLVEEVIERQLRKYK-------------NKLVARSQG 98
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE---VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
P ++ + EEDD V++ IVR K F + P+ +A Q+E + H F+ F
Sbjct: 99 HPTASSSGSNFKKEFFEEDDTSVEDNEIRIVRTKRFGIKPMFPEDACIQMELLGHSFFVF 158
Query: 273 RNEETGEINIVYKRKAGGYGVIIPKGN 299
N ET E+N+VYKRK G +G+I P+ N
Sbjct: 159 SNAETDEVNVVYKRKDGSFGLIEPEFN 185
>gi|226324344|ref|ZP_03799862.1| hypothetical protein COPCOM_02125 [Coprococcus comes ATCC 27758]
gi|225206792|gb|EEG89146.1| ribosomal subunit interface protein [Coprococcus comes ATCC 27758]
Length = 189
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 111/206 (53%), Gaps = 31/206 (15%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRI 153
LS + II G+N+++T ++ VE+K+GK + E D V LSV
Sbjct: 9 LSCMNFIISGRNIDITPGLRQAVEQKLGKL---EKYFTPETDIIVTLSVEKER------- 58
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNR 211
++ EVT+ K + ++R+E+++ +Y SIDLV II+R+LRK K K G H F +
Sbjct: 59 QKIEVTIPVKGN-IIRSEQESSDMYVSIDLVEEIIERQLRKYKTKLIAKQQGGH--DFRQ 115
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ +E+D +E + IVR K F + P+ +A Q+E + H+FY
Sbjct: 116 --------EFIESDTSAAESDEIE------IVRTKRFGIKPMFPEDACIQMELLGHNFYV 161
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPK 297
F N ET E+N+VYKRK G YG+I P+
Sbjct: 162 FSNAETDEVNVVYKRKNGTYGLIEPE 187
>gi|442805806|ref|YP_007373955.1| ribosomal subunit interface protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
gi|442741656|gb|AGC69345.1| ribosomal subunit interface protein [Clostridium stercorarium
subsp. stercorarium DSM 8532]
Length = 175
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 29/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+ GKN+E+TD ++ +K+ K + K E ++ V K I CEV
Sbjct: 1 MKYIVNGKNIEVTDALRERAIKKLSK-IEKFFKSDAECNIMFKVE-----KNRHI--CEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F+K +RAEE +YASID+V ++R++RK N+ K+ + +
Sbjct: 53 TIFSK-DLFIRAEETTNDMYASIDMVIDKLERQIRK---------------NKTKLGKRI 96
Query: 219 TQ--VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
Q V+ + D++ + E++N+ +V+ K F + P+ V EAI Q+ + H+F+ F N E
Sbjct: 97 RQESVIPENFDIKEDIEEENYK---VVKSKRFAIKPMDVEEAILQMNLLGHNFFVFTNAE 153
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T E+N+VYKRK G YG+I P
Sbjct: 154 TEEVNVVYKRKDGNYGLIEP 173
>gi|197302426|ref|ZP_03167481.1| hypothetical protein RUMLAC_01154 [Ruminococcus lactaris ATCC
29176]
gi|197298324|gb|EDY32869.1| ribosomal subunit interface protein [Ruminococcus lactaris ATCC
29176]
Length = 186
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 115/206 (55%), Gaps = 29/206 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+T +K+ +E+K+GK + ++ E++V LSV G ++ EV
Sbjct: 1 MNFIISGKNIEVTPGLKDAIEQKLGK-LERYFTPETEINVTLSVEKGR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--- 215
T+ K + ++R+E+ ++ +Y SIDLV +I+R+LRK K N+L R
Sbjct: 53 TIPVKGN-IIRSEQTSDNMYVSIDLVEEVIERQLRKYK-------------NKLVARSQG 98
Query: 216 EPVTQVVENDADVQS--EEEDDNFVDE--VIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
P + ++ + E EDD D+ IVR K F + P+ +A Q+E + H F+
Sbjct: 99 HPTSYTSTGNSFRKEFFETEDDAAEDDEIQIVRTKKFGIKPMFPEDACIQMELLGHSFFV 158
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPK 297
F N ET E+N+VYKRK G +G+I P+
Sbjct: 159 FSNAETDEVNVVYKRKDGSFGLIEPE 184
>gi|302390145|ref|YP_003825966.1| 30S ribosomal protein S30P; sigma 54 modulation protein
[Thermosediminibacter oceani DSM 16646]
gi|302200773|gb|ADL08343.1| SSU ribosomal protein S30P; sigma 54 modulation protein
[Thermosediminibacter oceani DSM 16646]
Length = 180
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 27/202 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR---EVDVRLSVRGGEFGKGPRIRR 155
+K+ + GKN E+T ++ + E+K+GK +HL E V L V K I
Sbjct: 1 MKVTVSGKNFEVTPALREYAEKKIGKLGRHFNHLNNDNLEAQVTLHVE-----KDRHI-- 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ ++R EE+ + +Y+SIDLV + R++ K K K + R K N+
Sbjct: 54 VEVTIPVND-IILRGEEETQDMYSSIDLVVDKLNRQIEKYKTKLTKALR--KNSNK---- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
NDA V+SE ++N + IV++K F + P++V EA+ Q++ + HDF+ F N
Sbjct: 107 --------NDAVVESEIPEEN--EPRIVKVKRFAVKPMSVDEAVLQMDLLGHDFFVFVNA 156
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
ET EIN+VYKRK G YG+I+P+
Sbjct: 157 ETDEINVVYKRKDGDYGLIVPE 178
>gi|433461519|ref|ZP_20419128.1| putative ribosomal subunit interface protein [Halobacillus sp.
BAB-2008]
gi|432190019|gb|ELK47070.1| putative ribosomal subunit interface protein [Halobacillus sp.
BAB-2008]
Length = 185
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 113/203 (55%), Gaps = 36/203 (17%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--------EVDVRLSVRGGEFGKGPRIR 154
I+G+NLE+TD++K++VE+KVGK L R EV V LSV E +
Sbjct: 6 IRGENLEVTDSIKDYVEKKVGK-------LERYFDTPPTSEVHVNLSVYNDE-------Q 51
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
EVT+ K+ ++RAEE +YA+IDLV ++R++RK H NR
Sbjct: 52 TIEVTI-PMKNLLLRAEEHNTDLYAAIDLVVDKLERQIRK----------HKTKVNRRFR 100
Query: 215 REPVTQVVENDADVQSEE---EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+E + V + + +S++ +D+N +D IV+ K F++ P+ EA Q++ + H+F+
Sbjct: 101 QEGAPKYVFAELERESQQGQIQDENELDVQIVKTKRFDLKPMDSEEAALQMDMLGHNFFV 160
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F N T E NIVYKR+ G YG+I
Sbjct: 161 FTNASTDETNIVYKRRDGRYGLI 183
>gi|255307472|ref|ZP_05351643.1| putative sigma 54 modulation protein [Clostridium difficile ATCC
43255]
Length = 185
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 44/211 (20%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I+ G+ ++LTD +K +V+ K+ + +L E +V+++V K R ++ EV
Sbjct: 1 MQIIVSGRQMKLTDGIKGYVDGKLSRL---EKYLDPESEVKVTVSA----KKDR-QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ + +YA+ID+V + R++ K K K D
Sbjct: 53 TIIPINGQIIRAEDVEDDLYAAIDIVCDKLSRQVVKYKTKVKDK---------------- 96
Query: 219 TQVVENDADVQSEEEDDNFVDE---------------VIVRMKFFEMPPLTVSEAIEQLE 263
V+N+ ++ E D F+D VI R K F + P++ EAI Q+E
Sbjct: 97 ---VQNNKSIRFENLD--FIDNSSEFDDYDDEEDENIVIERRKKFNVKPMSSEEAILQME 151
Query: 264 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
V H+FY FRN++ EINIVYKRKAGGYG+I
Sbjct: 152 LVGHNFYMFRNQDNFEINIVYKRKAGGYGLI 182
>gi|339443824|ref|YP_004709828.1| hypothetical protein EGYY_01850 [Eggerthella sp. YY7918]
gi|338903576|dbj|BAK43427.1| hypothetical protein EGYY_01850 [Eggerthella sp. YY7918]
Length = 192
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 109/195 (55%), Gaps = 11/195 (5%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+ + G+ + +TD ++ + EEK+G ++ + +D + + + PR CEVTL
Sbjct: 3 ITVTGRKMPVTDALRQYAEEKIGNSMKVMD--INPLDAEVVLLVEKNPANPRPAVCEVTL 60
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN-RLKVREPVT 219
TK H ++R EE E +YA+ID+ ++ + R+LRK K K D +G R+ EP
Sbjct: 61 HTKGH-IIRVEESEEDMYAAIDVAAAKVVRQLRKYKTKVIDRKLRAEGETIRIDTTEPAN 119
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
++ D ++ E +D ++R+K E PLT EA+ +++ + HDF+ + + +T
Sbjct: 120 --LDVDGLMKELEAEDE-----VLRVKEIEFEPLTEEEALVKIDLLGHDFFAYTDRDTSL 172
Query: 280 INIVYKRKAGGYGVI 294
+N++Y+R GGYG++
Sbjct: 173 VNVLYRRDDGGYGLL 187
>gi|389817468|ref|ZP_10208155.1| hypothetical protein A1A1_08904 [Planococcus antarcticus DSM 14505]
gi|388464592|gb|EIM06922.1| hypothetical protein A1A1_08904 [Planococcus antarcticus DSM 14505]
Length = 188
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 13/192 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ H+E+KV K + + V + + EVT+
Sbjct: 5 IRGENIEVTPAIREHIEKKVEKI---ERYFTDGANATAMVNLKSYNHNQT--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA+IDL+ S ++R++RK K K + R G
Sbjct: 59 MKNLTLRAEERHDDMYAAIDLIVSKLERQIRKYKTKVNRKFRERDGMG------LAFATA 112
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
END VQ+E E+D+ D IVR K F++ P+ EA+ Q+ + H+F+ F + E+ E NI
Sbjct: 113 ENDTRVQNEAEEDD-EDFTIVRTKQFDLKPMDEEEAVLQMNMLGHNFFVFTDAESNETNI 171
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 172 VYKRKDGSYGLI 183
>gi|331090519|ref|ZP_08339372.1| hypothetical protein HMPREF9477_00015 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405862|gb|EGG85390.1| hypothetical protein HMPREF9477_00015 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 178
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +K +E K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIEVTPGLKETIEHKLGK-LERYFTPDTEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ KK ++R+E+ + +Y SIDLV +I+R+LRK K K RH G N
Sbjct: 53 TIPVKK-DIIRSEQVSSDMYVSIDLVEEVIERQLRKYKNKLV--ARHQAGGNF------- 102
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
N A +SE++ + + IVR K F + P+ +A Q++ + H+F+ F N ET
Sbjct: 103 -----NQAFFESEDDTADTNEIKIVRTKRFGIKPMFPEDACMQMDLLGHNFFVFSNAETE 157
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK G +G+I P+
Sbjct: 158 QVNVVYKRKDGSFGLIEPE 176
>gi|325662446|ref|ZP_08151052.1| hypothetical protein HMPREF0490_01792 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086236|ref|ZP_08335318.1| hypothetical protein HMPREF0987_01621 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471280|gb|EGC74504.1| hypothetical protein HMPREF0490_01792 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406395|gb|EGG85909.1| hypothetical protein HMPREF0987_01621 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 178
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+++T +K+ +E+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MNFIISGKNIDVTPGLKSCIEQKLGK-LERYFTPETEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++R+E+ + +Y SIDLV +I+R+LRK K K R+ +G N
Sbjct: 53 TIPVKGH-IIRSEQSSNDMYVSIDLVEEVIERQLRKYKNKLV--ARNQEGSN-------F 102
Query: 219 TQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q D SE+ DE+ I+R K F + P+ +A Q++ + HDFY F N ET
Sbjct: 103 KQEFFESEDTSSED------DEIKIIRTKRFGIKPMFPEDACIQMDLLGHDFYVFFNAET 156
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VYKRK G +G+I P+
Sbjct: 157 EEVNVVYKRKNGTFGLIEPE 176
>gi|386715366|ref|YP_006181689.1| putative ribosomal subunit interface protein [Halobacillus
halophilus DSM 2266]
gi|384074922|emb|CCG46415.1| putative ribosomal subunit interface protein [Halobacillus
halophilus DSM 2266]
Length = 187
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 32/206 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--------EVDVRLSVRGGEFGKG 150
++ I+G+NLE+TD++K++VE+KVGK L R EV V LSV E
Sbjct: 2 LQYTIRGENLEVTDSIKDYVEKKVGK-------LERYFDNPPSSEVHVNLSVYNDE---- 50
Query: 151 PRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN 210
+ EVT+ K+ ++RAEE +YA+IDLV ++R++RK K K + + F
Sbjct: 51 ---QTIEVTI-PMKNLLLRAEEHNTDLYAAIDLVVDKLERQIRKHKTKVN------RKFR 100
Query: 211 RLKVREPVTQVVENDADVQS--EEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
+ + V +E +A + EEE +F D IV+ K F++ P+ EA Q++ + H+
Sbjct: 101 QEGAPKHVFAELEREAQQEQLKEEESSDF-DIQIVKTKRFDLKPMDSEEAALQMDMLGHN 159
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVI 294
FY F N T E NIVYKR+ G YG+I
Sbjct: 160 FYVFTNANTDETNIVYKRRDGRYGLI 185
>gi|332708325|ref|ZP_08428305.1| ribosomal subunit interface protein, partial [Moorea producens 3L]
gi|332352929|gb|EGJ32489.1| ribosomal subunit interface protein [Moorea producens 3L]
Length = 144
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 20/159 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQGKN+++TD ++++V +K+ KAV ++ +VD+ LSV + PRI +
Sbjct: 1 MKLVIQGKNIDITDAIRDYVHQKIEKAVNHFQNITNQVDINLSV-----ARNPRINPKQT 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ K V+RA+E E +YASIDLV+ I R+LRK KEK + K N+ K
Sbjct: 56 AEVTIYANK-TVIRAQEGTENLYASIDLVADKIHRQLRKYKEK----LQSQKTRNQAK-- 108
Query: 216 EPVTQVVENDADVQSEEEDDNF--VDEVIVRMKFFEMPP 252
TQV+ + V + D + E +VRMK+F MPP
Sbjct: 109 ---TQVILEEESVPVDLISDRTPELPEEVVRMKYFAMPP 144
>gi|226356700|ref|YP_002786440.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
deserti VCD115]
gi|226318690|gb|ACO46686.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Deinococcus deserti VCD115]
Length = 188
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 114/195 (58%), Gaps = 15/195 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E++D ++++V+EK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVSDAMRDYVQEKLTR-LDRYNDQITDARVTLTVR--DVRDAGRRNRVEVQL-N 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+G++RAEE +YA+ID S +++R+LRK K R+MK + V +P
Sbjct: 62 VPNGIIRAEEHHSDMYAAIDKASDVLERQLRKFKT------RYMKQRHE-TVPQPGPGPA 114
Query: 223 ENDADVQSEEED-DNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E ADV + +D F+ E IVR K F+M P++ +A+ Q+E + HDFY F N +
Sbjct: 115 E--ADVNAGLDDVSEFMPE-IVRQKRFDMRPMSPEDAVTQMEALGHDFYVFMNMGSNACG 171
Query: 282 IVYKRKAGGYGVIIP 296
+VY+R+ G YG+I P
Sbjct: 172 VVYRRRDGHYGLIEP 186
>gi|238925288|ref|YP_002938805.1| ribosome-associated protein Y (PSrp-1) [Eubacterium rectale ATCC
33656]
gi|238876964|gb|ACR76671.1| ribosome-associated protein Y (PSrp-1) [Eubacterium rectale ATCC
33656]
gi|291524418|emb|CBK90005.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Eubacterium
rectale DSM 17629]
gi|291527564|emb|CBK93150.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Eubacterium
rectale M104/1]
Length = 175
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I GKN+ELT+ +K VEEK+ K + K +V V LSV ++ EV
Sbjct: 1 MRITISGKNIELTEGLKQAVEEKLSK-LEKFFKPDTDVYVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H V+R+E+ + +Y SIDLV +I+R+LRK + K + ++
Sbjct: 53 TIPAKGH-VIRSEQVSNDMYVSIDLVEEVIERQLRKYRTK-------------ISAKKYA 98
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ ++D V++++ +D + IVR K F M P+ +A Q+E HDF+ FRN E
Sbjct: 99 PAIFQDDF-VEADDAEDEEIK--IVRTKRFGMKPMYPEDACIQMELSGHDFFVFRNAEND 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 156 EVNVVYKRKGHTYGLIEPE 174
>gi|328943666|ref|ZP_08241131.1| ribosomal subunit interface protein [Atopobium vaginae DSM 15829]
gi|327491635|gb|EGF23409.1| ribosomal subunit interface protein [Atopobium vaginae DSM 15829]
Length = 192
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 15/195 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+ + ++D +++HV+ KVG A+ DV L V P + CEVT++
Sbjct: 6 ISGRKVSVSDALRDHVQHKVGDALKVFDITPMSCDVVLRVDKNH--SNPDRKTCEVTVYV 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ VVR E +E +YA+ID S + R+LRK K + D + + + P
Sbjct: 64 RN-NVVRVEASSEDMYAAIDAASDKVTRQLRKYKTRIID--------RKQRSQAPAPAPS 114
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ +D+ E DD+ +VR K+ ++ P+T EA+ Q + + HDFY F N TG IN+
Sbjct: 115 KDLSDLIDEVADDDM----LVREKYIDLHPMTEEEALVQTDLIGHDFYVFENATTGLINV 170
Query: 283 VYKRKAGGYGVIIPK 297
VY R GGYG+I PK
Sbjct: 171 VYHRHNGGYGIIKPK 185
>gi|260886464|ref|ZP_05897727.1| ribosomal subunit interface protein [Selenomonas sputigena ATCC
35185]
gi|330839685|ref|YP_004414265.1| sigma 54 modulation protein/ribosomal protein S30EA [Selenomonas
sputigena ATCC 35185]
gi|402835192|ref|ZP_10883771.1| ribosomal subunit interface protein [Selenomonas sp. CM52]
gi|260863803|gb|EEX78303.1| ribosomal subunit interface protein [Selenomonas sputigena ATCC
35185]
gi|329747449|gb|AEC00806.1| sigma 54 modulation protein/ribosomal protein S30EA [Selenomonas
sputigena ATCC 35185]
gi|402275983|gb|EJU25113.1| ribosomal subunit interface protein [Selenomonas sp. CM52]
Length = 181
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T ++K++VE++VGK + K+ V E+ V L+V KG I EVT+
Sbjct: 6 VRGKNIEITPSLKDYVEKRVGK-ITKYFDEVGEISVLLTV-----SKGRHI--VEVTVPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++R EE +Y SIDLV ++R++RK K + + R GF + V
Sbjct: 58 PGGVLLRGEEATMDMYTSIDLVVEKLERQIRKQKTRLAKRFRG-GGFKE--------EAV 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ + +EE+ F +V+ K F + P+ V EAI Q+ ++H+F+ FRN E+ EIN+
Sbjct: 109 QQMGAIPVQEEEGEFP---LVKTKRFVVKPMDVQEAIMQMNLLNHNFFVFRNAESEEINV 165
Query: 283 VYKRKAGGYGVIIPKGN 299
VY+R G Y +I P GN
Sbjct: 166 VYRRTDGKYALIEP-GN 181
>gi|291459035|ref|ZP_06598425.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
078 str. F0262]
gi|291418289|gb|EFE92008.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
078 str. F0262]
Length = 179
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 111/200 (55%), Gaps = 23/200 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I G+N+ +TD ++N VE+K+GK R+ D +V + + E
Sbjct: 2 SMKLTIIGRNISVTDGLRNMVEKKLGKL----DKFFRQ-DTACTVT---LSTQKDMHKIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K V+RAE++ E +Y SIDLV +I+R+++K ++K D + F+
Sbjct: 54 VTIPVK-GTVIRAEQETEDMYQSIDLVVDVIERQIQKYRKKIIDRRQSALAFS------- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+A ++ E++ + I+R K ++ P+T EA Q+E V H F+ F+N ++
Sbjct: 106 -------EAFLEKEQDKTEDAEIRILRTKQIDLKPMTPEEACLQMELVGHSFFVFQNGDS 158
Query: 278 GEINIVYKRKAGGYGVIIPK 297
G++N+VYKRK YG+I P+
Sbjct: 159 GKVNVVYKRKENSYGLIEPE 178
>gi|291547280|emb|CBL20388.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[Ruminococcus sp. SR1/5]
Length = 175
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ +T+ +K VE+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIAVTEGLKTAVEDKLGK-LERYFTPETEISVTLSVEKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + +
Sbjct: 53 TIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQESTNFQKAYL---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
D D + +EE I+R K F + P+ +A Q+E + H+F+ F N ET
Sbjct: 108 ------DKDYEEDEEVK------IIRTKKFGIKPMYPEDACVQMELLGHNFFVFFNAETE 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK YG+I P+
Sbjct: 156 QVNVVYKRKGNTYGLIEPE 174
>gi|238927665|ref|ZP_04659425.1| ribosome-associated inhibitor A [Selenomonas flueggei ATCC 43531]
gi|304438240|ref|ZP_07398182.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|238884381|gb|EEQ48019.1| ribosome-associated inhibitor A [Selenomonas flueggei ATCC 43531]
gi|304368847|gb|EFM22530.1| ribosomal subunit interface protein [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 181
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 109/194 (56%), Gaps = 25/194 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE++VGK + K+ V E+ V LSV G + + EVT
Sbjct: 6 IRGKNVEVTPALRDYVEKRVGK-ITKYFDNVGEIAVLLSVEG-------KHHKVEVTAPV 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +E +Y+SIDLV ++R++RK K K + R GF + V
Sbjct: 58 ARGILLRGEEHSEDMYSSIDLVIEKLERQIRKQKTKLARRFRQ-GGFK--------AEAV 108
Query: 223 ENDADVQSEEEDDNFVDEV--IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
E A EE DE+ +V+ K F + P+ V EAI Q+ ++H F+ FRN E+ E+
Sbjct: 109 ETFAQPIPEE------DELYPVVKTKRFTLQPMDVQEAIMQMNLLNHHFFVFRNAESEEV 162
Query: 281 NIVYKRKAGGYGVI 294
NIVY R G Y +I
Sbjct: 163 NIVYGRHDGKYALI 176
>gi|381211563|ref|ZP_09918634.1| hypothetical protein LGrbi_16669 [Lentibacillus sp. Grbi]
Length = 185
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 118/199 (59%), Gaps = 17/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T ++++VE+K+GK A + +V+V LSV E +R E
Sbjct: 1 MKYNIRGENIEVTGAIRDYVEKKIGKLARYFDTPPSSDVNVNLSVYNDE-------QRIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + ++RAEE +YA+IDLV ++R++RK K K + + F + +
Sbjct: 54 VTI-PMPNLLLRAEEQHIDLYAAIDLVVGKLERQIRKYKTKVN------RKFRQEGSPKH 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ +E +A +++E+E+ + V+ IVR K F++ P+ EA+ Q++ + H FY F N +
Sbjct: 107 IFAELEKEAQMENEKEESDDVE--IVRKKQFDLKPMDSEEAVLQMDMLGHAFYVFTNAVS 164
Query: 278 GEINIVYKRKAGGYGVIIP 296
G N+VY+RK G YG+I P
Sbjct: 165 GNTNVVYRRKDGKYGLIEP 183
>gi|339007031|ref|ZP_08639606.1| hypothetical protein BRLA_c07810 [Brevibacillus laterosporus LMG
15441]
gi|421874834|ref|ZP_16306434.1| lmo2511 protein [Brevibacillus laterosporus GI-9]
gi|338776240|gb|EGP35768.1| hypothetical protein BRLA_c07810 [Brevibacillus laterosporus LMG
15441]
gi|372456178|emb|CCF15983.1| lmo2511 protein [Brevibacillus laterosporus GI-9]
Length = 183
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 111/197 (56%), Gaps = 20/197 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+++T+ ++ +VE+K+ + +L EV V + V GE G EVT+
Sbjct: 5 IRGENIQVTEALREYVEKKISRLERYFDNLGHVEVHVTMRVLRGE---GT----IEVTI- 56
Query: 162 TKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
GV+ RAEE + +YA+IDLV ++R++RK K K + RH G + E +
Sbjct: 57 -PMTGVILRAEETHDDMYAAIDLVVEKLERQMRKYKTKINRKQRHESGAKAMPNMEASSV 115
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
V ++EEDD D IVR K F + P+ EAI Q+E + H+F+ F N E+ ++
Sbjct: 116 AV-------ADEEDDVQFD--IVRTKRFNLKPMDSEEAIMQMELLGHNFFVFENSESNDV 166
Query: 281 NIVYKRKAGGYGVIIPK 297
N+VY+R G YG+I PK
Sbjct: 167 NVVYRRNDGRYGLIEPK 183
>gi|456012881|gb|EMF46569.1| Ribosomal subunit interface protein [Planococcus halocryophilus
Or1]
Length = 189
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 13/192 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +++H+E+K+ K + + V + + EVT+
Sbjct: 6 IRGENIEVTPAIRDHIEKKIEKI---ERYFTDGANATAMVNLKTYNNSQTQTKVEVTI-P 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA+IDL+ S ++R++RK K K + R G V
Sbjct: 62 MKNLTLRAEERHDDLYAAIDLIVSKLERQIRKYKTKVNRKFRDRDGMG------VSFAVA 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
END Q++ ++++F IVR K F++ P+ EA+ Q+ + H F+ F + E+ E NI
Sbjct: 116 ENDTRHQNDSDEEDFT---IVRTKQFDLKPMDEEEAVLQMNMLGHSFFVFTDAESNETNI 172
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 173 VYKRKDGSYGLI 184
>gi|320334243|ref|YP_004170954.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
maricopensis DSM 21211]
gi|319755532|gb|ADV67289.1| sigma 54 modulation protein/ribosomal protein S30EA [Deinococcus
maricopensis DSM 21211]
Length = 206
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 17/194 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+TD ++++VE K+ + + + + V + V L+VR + R R EV L
Sbjct: 28 LTGRNVEVTDALRDYVETKLTR-LDRFNGQVTDARVTLTVR--DVRDASRRNRVEVQL-N 83
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+G++RAEE +YA+ID +++R+LRK K K H R
Sbjct: 84 VPNGIIRAEEHHADMYAAIDKAGDVLERQLRKFKTKIMRH------------RHDAQPDD 131
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
S ++ F E IVR K F++ P+T +A+ Q+E + HDFY FRN +T +
Sbjct: 132 AAPPAPASGDDVSEFTPE-IVRQKRFDLRPMTAEDAVTQMEALGHDFYVFRNMDTEGCAV 190
Query: 283 VYKRKAGGYGVIIP 296
VY+R+ G YG+I P
Sbjct: 191 VYRRRDGNYGLIEP 204
>gi|323486367|ref|ZP_08091692.1| hypothetical protein HMPREF9474_03443 [Clostridium symbiosum
WAL-14163]
gi|323695010|ref|ZP_08109156.1| ribosomal subunit interface protein [Clostridium symbiosum
WAL-14673]
gi|323400349|gb|EGA92722.1| hypothetical protein HMPREF9474_03443 [Clostridium symbiosum
WAL-14163]
gi|323500906|gb|EGB16822.1| ribosomal subunit interface protein [Clostridium symbiosum
WAL-14673]
Length = 175
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 27/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N+ +T +K VEEK+GK + ++ + E + LSV ++ EVT+
Sbjct: 5 ITGRNINVTPGLKAAVEEKIGK-LERYFNQDTEAIITLSVEKER-------QKIEVTI-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K ++RAE+++ +Y SIDLV II+R+L+K K K D + F+
Sbjct: 56 VKGTIIRAEQESNDMYVSIDLVEEIIERQLKKYKNKIVDKKQAAIAFS------------ 103
Query: 223 ENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
D + E E D DEV IV++K F M P+ EA Q+E + H FY F N ET ++N
Sbjct: 104 --DYFMNEEYESD---DEVKIVKVKRFAMKPMDPEEACVQMELLGHAFYVFLNSETDQVN 158
Query: 282 IVYKRKAGGYGVIIPK 297
+VYKRK YG+I P+
Sbjct: 159 VVYKRKGNTYGLIEPE 174
>gi|358065607|ref|ZP_09152143.1| hypothetical protein HMPREF9473_04206 [Clostridium hathewayi
WAL-18680]
gi|356696093|gb|EHI57716.1| hypothetical protein HMPREF9473_04206 [Clostridium hathewayi
WAL-18680]
Length = 176
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 114/199 (57%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+E+T +++ +++K+GK + ++ + EV V LSV+ + + EV
Sbjct: 1 MRYTITGRNIEVTPGLRDAIQDKIGK-LDRYFNPDTEVIVTLSVQKDK-------QNIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++RAEE + +Y SIDLV II+R+++K K K D + + F+ L + E
Sbjct: 53 TIPVKGN-IIRAEESSSDMYVSIDLVEEIIERQIKKYKTKLIDKKQAAQSFSELFINEEP 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T D +++ IV+ K F + P+ EA Q+E + H+FY F N +T
Sbjct: 112 TAA---DEEIK------------IVKTKKFAVKPMDPEEACLQMELLGHNFYVFLNSDTD 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
++++VYKRK+ YG+I P+
Sbjct: 157 QVSVVYKRKSNTYGLIEPE 175
>gi|357011496|ref|ZP_09076495.1| YvyD [Paenibacillus elgii B69]
Length = 183
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 111/200 (55%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T+ +K+HVE+K+G+ + EV+V LSV G ++ E
Sbjct: 1 MKFNIRGENIEVTEALKDHVEKKLGRLERYFEAPPTSEVNVTLSVVKG-------MQTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVRE 216
VT+ ++RAEE +YA+ DLV ++R++RK K K + R G L ++
Sbjct: 54 VTI-PLTGLMLRAEEKHADMYAAADLVVDKLERQIRKAKTKANRKIRLEGGIKDLFRMEL 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P DA ++EDD +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 P-------DASYSLDDEDDY----ELVRTKRFTLKPMDVEEAILQMNMVGHNFFVFSNSD 161
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T ++N+VYKR G YG+I P
Sbjct: 162 TEQVNVVYKRNDGKYGLIEP 181
>gi|150388623|ref|YP_001318672.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
metalliredigens QYMF]
gi|149948485|gb|ABR47013.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
metalliredigens QYMF]
Length = 177
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 29/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
+K+I+ GKN+++TD +++ V+ K+GK + +EV+ + LSV+ K +I
Sbjct: 1 MKVIVSGKNVQVTDALRDMVQTKLGKL---DKYFNKEVEAQATLSVQ-----KSRQI--I 50
Query: 157 EVTL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
E+T+ F ++RAEE E +YASID V + + +LRK K K + K + ++
Sbjct: 51 EITIPFD--GSILRAEEKTEDMYASIDGVVNKLTSQLRKHKTKMENKT---KKYETIRF- 104
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E + VE DV S+E IV+ K F M P+ EA+ Q+E + H+FY F N
Sbjct: 105 ENIPTYVE---DVDSDESK-------IVKTKRFAMKPMHSEEAVLQMELIGHNFYMFANA 154
Query: 276 ETGEINIVYKRKAGGYGVIIP 296
ET E+N+VYKRK G YG+I P
Sbjct: 155 ETDEVNVVYKRKDGNYGLIEP 175
>gi|283798777|ref|ZP_06347930.1| ribosomal subunit interface protein [Clostridium sp. M62/1]
gi|291073460|gb|EFE10824.1| ribosomal subunit interface protein [Clostridium sp. M62/1]
gi|295092737|emb|CBK78844.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Clostridium
cf. saccharolyticum K10]
gi|295115080|emb|CBL35927.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[butyrate-producing bacterium SM4/1]
Length = 175
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 110/199 (55%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+N+++T ++ V EK+GK + ++ + E + LSV ++ EV
Sbjct: 1 MRYTITGRNIDVTPGLREAVIEKIGK-LERYFNQDTEAIITLSVTKDR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAEE + +Y SIDLV II+R+L+K K K D + F+ L V+E
Sbjct: 53 TIPVKGH-IIRAEEQSTDMYVSIDLVEEIIERQLKKYKRKLIDKKQAPVDFSELFVQE-- 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+SE +D+ +++V K F M P+ EA Q+E + H FY F N ET
Sbjct: 110 ----------ESEPDDEIKIEKV----KKFAMKPMDPEEACVQMELLGHSFYVFLNAETE 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 156 EVNVVYKRKGHTYGLIEPE 174
>gi|218295112|ref|ZP_03495948.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
aquaticus Y51MC23]
gi|218244315|gb|EED10840.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
aquaticus Y51MC23]
Length = 186
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 118/205 (57%), Gaps = 24/205 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KLI G+NLE+TD ++++VE+K+ + + ++ + V LS+ G P + +
Sbjct: 1 MNVYKLI--GRNLEITDAIRDYVEKKLSR-LDRYQNGELMAKVVLSLAGS-----PHVEK 52
Query: 156 ---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNR 211
EV L G++R EE+ + +YA+ID + ++ +L++ KE+ RH +G
Sbjct: 53 RAKAEVQL-DLPGGLLRVEEEDQDLYAAIDRMVDRLEIQLKRYKERRFVGRRHTYQG--- 108
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
P +V + +A + EEE+ IVR+K FEM P+ EA+ Q+E + HDF+
Sbjct: 109 ----PPPPEVRDMEALRKPEEEEGP----RIVRVKRFEMKPMDPEEAVFQMEALGHDFFV 160
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
FRN +T EIN+VY+RK G YG+I P
Sbjct: 161 FRNAKTDEINVVYRRKDGNYGLIEP 185
>gi|291533128|emb|CBL06241.1| ribosomal subunit interface protein [Megamonas hypermegale ART12/1]
Length = 179
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 112/193 (58%), Gaps = 26/193 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE+KVGK V K+ V E+ V L+V K I EVT+
Sbjct: 8 IRGKNIEVTPALRDYVEKKVGK-VTKYFDNVGEITVLLTV-----SKDRHI--VEVTVPV 59
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ G++ R +E +Y SIDLV I+R++RK K K R +G R ++ P +
Sbjct: 60 Q--GILLRGQEATMDMYTSIDLVIEKIERQIRKYKTKLEKRFR--EGSIRTEMMTPPAKP 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
VE D + V+++ K F + P+ V EAI Q+ ++HDF+ +R+++T ++N
Sbjct: 116 VEED-------------EAVVIKTKRFMVKPMDVQEAIMQMNLLNHDFFVYRDDKTEDVN 162
Query: 282 IVYKRKAGGYGVI 294
+VYKRK G YG+I
Sbjct: 163 VVYKRKDGKYGLI 175
>gi|410696850|gb|AFV75918.1| ribosomal subunit interface protein [Thermus oshimai JL-2]
Length = 186
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 114/205 (55%), Gaps = 24/205 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIR 154
++ KLI G+NLE+TD ++ +VE+K+ + ++ L+ +V + L+ P +
Sbjct: 1 MNVYKLI--GRNLEITDAIREYVEKKLARLDRYQNGELMAKVVLSLA-------NSPHVE 51
Query: 155 R---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R EV + G+VR EE+ + +YA+ID + ++ +L++ KE+ RH
Sbjct: 52 RKAKAEVQV-DLPGGLVRVEEEDQDLYAAIDRMVDRLETQLKRFKERRYVGKRH------ 104
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ P + V + ++ EE++ IVR+K FEM P+ EA Q+E + HDF+
Sbjct: 105 -SYQGPPPEEVRALSALRKPEEEEG---PRIVRVKRFEMKPMDPEEAAFQMEALGHDFFV 160
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
FRN ET EIN++Y+RK G YG+I P
Sbjct: 161 FRNRETEEINVIYRRKDGNYGLIEP 185
>gi|358068071|ref|ZP_09154541.1| hypothetical protein HMPREF9333_01422 [Johnsonella ignava ATCC
51276]
gi|356693615|gb|EHI55286.1| hypothetical protein HMPREF9333_01422 [Johnsonella ignava ATCC
51276]
Length = 177
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 112/202 (55%), Gaps = 29/202 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
++ II GKN+E+T +++ V+ K K + + +VR L V+ ++
Sbjct: 1 MRYIITGKNIEVTPSLREAVKHKFSKL---EKYFTDDTEVRATLIVQKDS-------QKI 50
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ T K G +RAE++++ +Y+SID + II++++++ K K D + F+ ++E
Sbjct: 51 EVTIPTNK-GFIRAEQESQDMYSSIDAIQDIIEKQIKRYKNKLVDKKHDVIPFSDFFLKE 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
D +EE D E+ I ++K F + P+ EA Q+E ++H FY F N
Sbjct: 110 ----------DYDTEESD-----EINIAKIKRFSIKPMDAEEACLQMELLNHSFYVFINS 154
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
ETG +++VYKRK G YG+I P+
Sbjct: 155 ETGSVSVVYKRKNGTYGLIEPE 176
>gi|346722807|ref|YP_001180117.2| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|345106778|gb|ABP66926.2| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 181
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 113/201 (56%), Gaps = 23/201 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ II GKN+E+TD +K+ +E+K+ K + ++ + +V V LSV +IR E
Sbjct: 1 MNFIISGKNIEVTDALKDRIEKKLSK-LERYVKMNCDVHVTLSVE--------KIRHIVE 51
Query: 158 VTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ +G ++RAEE + +Y++IDLV ++R++RK K K + + + + E
Sbjct: 52 VTI--PFYGMILRAEEASNDMYSAIDLVVDSLERQIRKFKTKIAKRAKDAESLRYMTFEE 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
Q ++EE+ F I + K F + P++V EAI Q+ + H F+ F N++
Sbjct: 110 EAQQET-------NQEENGEFK---IAKTKRFPIKPMSVDEAILQMNLLGHSFFVFLNQD 159
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T ++N+VYKR G YG+I P+
Sbjct: 160 TDKVNVVYKRNDGAYGLIEPE 180
>gi|375085784|ref|ZP_09732407.1| ribosomal subunit interface protein [Megamonas funiformis YIT
11815]
gi|374566384|gb|EHR37627.1| ribosomal subunit interface protein [Megamonas funiformis YIT
11815]
Length = 177
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 26/193 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GKN+E+T ++++VE+KVGK V K+ V E+ V L+V K I EVT+
Sbjct: 6 IRGKNIEVTPALRDYVEKKVGK-VTKYFDNVGEITVLLTV-----SKDRHI--VEVTVPV 57
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
G++ R +E +Y SIDLV I+R++RK K K R G R ++ P +
Sbjct: 58 --QGILLRGQEATMDMYTSIDLVIEKIERQIRKYKTKLEKRFRE--GSIRTEMMTPPAKP 113
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
VE D + V+++ K F + P+ V EAI Q+ ++HDF+ +R+++T ++N
Sbjct: 114 VEED-------------EAVVIKTKRFVVKPMDVQEAIMQMNLLNHDFFVYRDDKTEDVN 160
Query: 282 IVYKRKAGGYGVI 294
+VYKRK G YG+I
Sbjct: 161 VVYKRKDGKYGLI 173
>gi|385800797|ref|YP_005837201.1| 30s ribosomal protein S30 [Halanaerobium praevalens DSM 2228]
gi|309390161|gb|ADO78041.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Halanaerobium praevalens DSM 2228]
Length = 194
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 15/203 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K++ GKN+++T +K H EEKV K + EV + + V K I EV
Sbjct: 1 MKIMTYGKNIDVTPALKKHAEEKVQKLERYFNGEPMEVQISMEVE-----KERHI--VEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH----GRHMKGFNRLKV 214
T + K ++R EE +YASID V ++R++RK K K D + K + K
Sbjct: 54 TTYVKG-LILRGEEATGDMYASIDGVMDKLERQIRKYKTKIHDRFIERKQEYKEEYKAKR 112
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+E QV+ + + E D + + +V+ K F M P+ V EA Q++ +DHDF+ F N
Sbjct: 113 KE---QVLNHQLGNEEETIDTDVFEPQVVKTKRFPMKPMNVEEACMQMDLLDHDFFVFHN 169
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
+T E N+VYKRK G YG+I PK
Sbjct: 170 PDTEETNVVYKRKDGNYGLIEPK 192
>gi|210615353|ref|ZP_03290517.1| hypothetical protein CLONEX_02733 [Clostridium nexile DSM 1787]
gi|210150380|gb|EEA81389.1| hypothetical protein CLONEX_02733 [Clostridium nexile DSM 1787]
Length = 178
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 114/201 (56%), Gaps = 33/201 (16%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
II GKN+++T +K+ +E+K+GK + ++ E+ V LSV ++ EVT+
Sbjct: 4 IISGKNIDVTPGLKSTIEQKLGK-LERYFTPDTEIIVTLSVEKER-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K H ++R+E+ ++ +Y SIDLV +I+R+LRK K N+L R+
Sbjct: 56 VKGH-IIRSEQVSDDMYVSIDLVEEVIERQLRKYK-------------NKLIARQ----- 96
Query: 222 VENDADVQSE----EEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ + QSE E+D + DE+ I+R K F + P+ +A Q+E + H+F+ F N E
Sbjct: 97 -QEGGNFQSEFFEAEQDTSNNDEIKIIRTKRFGIKPMFPEDACVQMELLGHNFFVFSNAE 155
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T E+N+VYKRK YG+I P+
Sbjct: 156 TDEVNVVYKRKNNTYGLIEPE 176
>gi|355625042|ref|ZP_09047984.1| hypothetical protein HMPREF1020_02063 [Clostridium sp. 7_3_54FAA]
gi|354821489|gb|EHF05875.1| hypothetical protein HMPREF1020_02063 [Clostridium sp. 7_3_54FAA]
Length = 175
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 27/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N+ +T +K +EEK+GK + ++ + E + LSV ++ EVT+
Sbjct: 5 ITGRNINVTPGLKAALEEKIGK-LERYFNQDTEAIITLSVEKER-------QKIEVTI-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K ++RAE+++ +Y SIDLV II+R+L+K K K D + F+
Sbjct: 56 VKGTIIRAEQESNDMYVSIDLVEEIIERQLKKYKNKIVDKKQAAIAFS------------ 103
Query: 223 ENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
D + E E D DEV IV++K F M P+ EA Q+E + H FY F N ET ++N
Sbjct: 104 --DYFMNEEYESD---DEVKIVKVKRFAMKPMDPEEACVQMELLGHAFYVFLNSETDQVN 158
Query: 282 IVYKRKAGGYGVIIPK 297
+VYKRK YG+I P+
Sbjct: 159 VVYKRKGNTYGLIEPE 174
>gi|225175290|ref|ZP_03729285.1| sigma 54 modulation protein/ribosomal protein S30EA [Dethiobacter
alkaliphilus AHT 1]
gi|225169042|gb|EEG77841.1| sigma 54 modulation protein/ribosomal protein S30EA [Dethiobacter
alkaliphilus AHT 1]
Length = 177
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 111/201 (55%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KLI++GKN+E+T+ ++ +V +++GK + K+ + E V L+V G + R EV
Sbjct: 1 MKLILRGKNIEVTNALEEYVNKRIGK-IDKYFDVDTEAQVTLTVEHG-------MHRVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMKGFNRLKVR 215
T + ++RAEE +YASID V ++R++ K K +++ G +K N L
Sbjct: 53 TAAIEGM-ILRAEESTGDMYASIDSVVDKLERQIAKYKTRINRKARQGGGIKAMNEL--- 108
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
V+ EEED + +V+ K F + P+ V EAI Q+ + HDF+ F N
Sbjct: 109 ----------PQVEDEEEDWD-----VVKTKRFVVKPMPVEEAILQMNLLGHDFFVFMNA 153
Query: 276 ETGEINIVYKRKAGGYGVIIP 296
+ ++N++Y+RK G YG+I P
Sbjct: 154 DNEDVNVIYRRKDGKYGLIEP 174
>gi|431795283|ref|YP_007222188.1| ribosome-associated protein [Desulfitobacterium dichloroeliminans
LMG P-21439]
gi|430785509|gb|AGA70792.1| ribosome-associated protein Y (PSrp-1) [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 176
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 113/198 (57%), Gaps = 30/198 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +E+TD +K +V ++VGK + K+S +V V L V G R EVT
Sbjct: 5 VRGKQMEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEVT--A 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
HG++ R EE++ +YASID+V ++R++ K + + + R T+V
Sbjct: 55 PIHGIILRGEEESTDMYASIDMVVEKLERQIDKYRTRINKRMR--------------TKV 100
Query: 222 VENDADVQ-SEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+++ +Q + EDD+ E +VR K F P++V EAI Q+ V H+FY F N +T I
Sbjct: 101 LKDHETLQPANLEDDS---EEVVRYKRFGTKPMSVEEAIMQMNLVGHNFYAFTNMDTHAI 157
Query: 281 NIVYKRKAGG-YGVIIPK 297
N+VY+RK+GG YG++ P+
Sbjct: 158 NVVYRRKSGGDYGLLEPE 175
>gi|309790306|ref|ZP_07684873.1| sigma 54 modulation protein/ribosomal protein S30EA [Oscillochloris
trichoides DG-6]
gi|308227640|gb|EFO81301.1| sigma 54 modulation protein/ribosomal protein S30EA [Oscillochloris
trichoides DG6]
Length = 194
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 112/200 (56%), Gaps = 15/200 (7%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRC 156
L ++ +N ++T+ + H+EEK+GK L R +D + +R + + + R
Sbjct: 3 LTVKSRNGKITERQRQHIEEKLGK-------LGRYMDQITSATVEIRTEQQRQAGEVHRV 55
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+VTL + ++RAEE A +Y +ID V S++QR++++ KEK R + ++L V +
Sbjct: 56 QVTLTGDRGVILRAEEQASDLYGAIDEVQSVLQRQIQRYKEKYWRRERQRRQPDKLAVVD 115
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
VE V+ E D V +R K + P+ V +AIEQ+E + H F+ F++ E
Sbjct: 116 MPAVAVEEPPPVEETERRDMEV----IRTKKLTLRPMFVDDAIEQMELLGHSFFVFQDAE 171
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T +++++Y+R+ G YG+++P
Sbjct: 172 TEQVSVLYRRRDGNYGMLVP 191
>gi|70727138|ref|YP_254054.1| hypothetical protein SH2139 [Staphylococcus haemolyticus JCSC1435]
gi|123659610|sp|Q4L4H7.1|Y2139_STAHJ RecName: Full=Uncharacterized protein SH2139
gi|68447864|dbj|BAE05448.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 192
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 17/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+K+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQNSTT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDLV+S ++R++RK K K HG ++
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHGEPEAFVAEVQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P EN DV +E +D+ ++ I+R K F + P+ EA+ Q+E + HDFY F +
Sbjct: 116 APP-----ENVDDVNAEPTNDSEIE--IIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTD 168
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVYKRK G YG+I
Sbjct: 169 RETDGTSIVYKRKDGKYGLI 188
>gi|148656533|ref|YP_001276738.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
sp. RS-1]
gi|148568643|gb|ABQ90788.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Roseiflexus sp. RS-1]
Length = 193
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 37/213 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-----I 153
+ LI++ +N ++++ + H+E+K+ S L R +D R++ E + R +
Sbjct: 1 MDLIVKSRNGKISERQRQHIEQKL-------SRLDRYLD-RIAQVTVEHMEEMRRNEGNV 52
Query: 154 RRCEVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
R +VT+ HGV VRAE A +YA+ID V +QR++ + K+K + R
Sbjct: 53 HRVQVTV-VGDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDKH---------WRRG 102
Query: 213 KVREPVTQVVE--------NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLEN 264
K+R Q+VE + AD Q EEE IVR K F++ P+ EA+EQ+E
Sbjct: 103 KLRRQGGQIVEALPELAAPSLADTQEEEERPR-----IVRTKEFQVKPMYSDEAVEQMEL 157
Query: 265 VDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
+ H+F+ F++ +TG++N++Y+R+ G YG+I+P+
Sbjct: 158 LGHNFFIFQDADTGKLNVLYRRQDGNYGLIVPE 190
>gi|315652709|ref|ZP_07905683.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
DSM 3986]
gi|419718916|ref|ZP_14246216.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
F0468]
gi|315484911|gb|EFU75319.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
DSM 3986]
gi|383304938|gb|EIC96323.1| ribosomal subunit interface protein [Lachnoanaerobaculum saburreum
F0468]
Length = 178
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 106/194 (54%), Gaps = 22/194 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N+E+TD +K VEEK+ K + K+ E + LSV+ + EVT+ T
Sbjct: 5 ITGRNIEITDGLKKAVEEKLHK-LGKYFTEDTEAKITLSVQ-------KEAHKIEVTIPT 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ G++RAEE +E +Y SID V II+R+++K K K D + F+ L + E + V
Sbjct: 57 KQ-GLIRAEEVSEDMYVSIDKVEDIIERQIKKFKNKLVDRKQSGVSFSELFINEEDSDVE 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E D IV+ K F + P+ EA Q+E + HDFY FRN + EI +
Sbjct: 116 EEDEIK-------------IVKTKRFSIKPMDPEEACLQMELLAHDFYVFRNAISDEICV 162
Query: 283 VYKRKAGGYGVIIP 296
VYKRK G YG+I P
Sbjct: 163 VYKRKDGKYGIIEP 176
>gi|405982778|ref|ZP_11041089.1| ribosomal subunit interface protein [Slackia piriformis YIT 12062]
gi|404389487|gb|EJZ84563.1| ribosomal subunit interface protein [Slackia piriformis YIT 12062]
Length = 188
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 13/196 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ + +TD + ++ EK+G A+ S V + +V L V P I CEVT+
Sbjct: 5 VIGRKVTVTDALNDYAIEKIGNAMKVMSLDVADTEVVLRVEKTR--AIPCI--CEVTIRL 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K H + EE E +YA+ID+ S+ + R+LRK K + DH + LK P+
Sbjct: 61 KGH-TIHVEEHEEDMYAAIDVASAKVLRQLRKYKTRVIDH----RMRETLKETAPIEATG 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
N ++ +E D DEV VR+K + P+T EA+ Q++ + HDF+ + + +T E+N+
Sbjct: 116 ANFDELMAELSAD---DEV-VRVKEMDFEPMTEEEALIQIDLLGHDFFVYTDRDTNEVNV 171
Query: 283 VYKRKAGGYGVIIPKG 298
+Y+R GGYG++ PK
Sbjct: 172 MYRRTGGGYGLLKPKA 187
>gi|425737697|ref|ZP_18855968.1| ribosomal subunit interface protein [Staphylococcus massiliensis
S46]
gi|425481354|gb|EKU48514.1| ribosomal subunit interface protein [Staphylococcus massiliensis
S46]
Length = 186
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 15/199 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I G NL +TD ++N++EEKVGK + ++ V V + V+ + + EV
Sbjct: 2 IKFEIHGDNLTITDAIRNYIEEKVGK-LERYFTNVPNVTAHVKVKTYQNSST----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL+++ ++R++RK K K + +H N+ + PV
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTKVN--RKHRAKGNKEDLFTPV 113
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
VEN +EEE N D I++ K F + P+ EA+ Q+ + HDF+ F + +T
Sbjct: 114 ---VEN----TTEEEQQNEPDIEIIKSKEFALKPMDSEEAVLQMNLLGHDFFVFNDRDTE 166
Query: 279 EINIVYKRKAGGYGVIIPK 297
+IVYKRK G YG+I K
Sbjct: 167 GTSIVYKRKDGKYGLIQTK 185
>gi|291550761|emb|CBL27023.1| ribosomal subunit interface protein [Ruminococcus torques L2-14]
Length = 186
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 110/206 (53%), Gaps = 29/206 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+E+T +K+ +E+K+GK + ++ E++V LSV G ++ EV
Sbjct: 1 MKFIISGKNIEVTPGLKDAIEQKLGK-LERYFTPETEINVTLSVEKGR-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP- 217
T+ K + ++R+E+ + +Y SIDLV II+R+LRK K N+L R
Sbjct: 53 TIPVKGN-IIRSEQTSNDMYVSIDLVEEIIERQLRKYK-------------NKLVARNQG 98
Query: 218 -VTQVVENDADVQSEEEDDNFVDEV-----IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
T + + E D IVR K F + P+ +A Q+E + H+F+
Sbjct: 99 HPTSYAPSGNSFRKEFFDSEEETTEDDEVRIVRTKKFGIKPMFPEDACVQMELLGHNFFV 158
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPK 297
F N ET E+N+VYKRK G +G+I P+
Sbjct: 159 FSNAETDEVNVVYKRKDGSFGLIEPE 184
>gi|228474304|ref|ZP_04059039.1| ribosomal subunit interface protein [Staphylococcus hominis SK119]
gi|314936949|ref|ZP_07844296.1| ribosomal subunit interface protein [Staphylococcus hominis subsp.
hominis C80]
gi|418619352|ref|ZP_13182180.1| ribosomal subunit interface protein [Staphylococcus hominis VCU122]
gi|228271663|gb|EEK13010.1| ribosomal subunit interface protein [Staphylococcus hominis SK119]
gi|313655568|gb|EFS19313.1| ribosomal subunit interface protein [Staphylococcus hominis subsp.
hominis C80]
gi|374824398|gb|EHR88356.1| ribosomal subunit interface protein [Staphylococcus hominis VCU122]
Length = 191
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 112/196 (57%), Gaps = 10/196 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGK-LERYFNNVPNAVAHVKVKTYQNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDLV+S ++R++RK K + + R G + E
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRD-NGEPEPFIAEQQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T VV D + SE ++N ++ I+R K F + P+ EA+ Q++ + HDFY F + ET
Sbjct: 115 T-VVNEDVEATSESSNENEIE--IIRSKQFSLKPMDSEEAVLQMDLLGHDFYIFTDRETD 171
Query: 279 EINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 172 GTSIVYRRKDGKYGLI 187
>gi|317130281|ref|YP_004096563.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
cellulosilyticus DSM 2522]
gi|315475229|gb|ADU31832.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
cellulosilyticus DSM 2522]
Length = 187
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 117/203 (57%), Gaps = 27/203 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+NLE+T ++++VE+KVGK S L +V+V++SV ++ E+T+
Sbjct: 5 IRGENLEITPALRDYVEKKVGKLDKYFESPLKSDVNVKMSVLNNN-------QKVEITIP 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK------ESDHGRHMKGFNRLKVR 215
K ++RAEE +YA+IDLV ++R++RK K K + D ++M N L
Sbjct: 58 MVKL-LLRAEEKHSDMYAAIDLVIEKLERQIRKHKTKVNKKFRQDDSLKYMFK-NEL--- 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EP+ + V+ V E+ED+ IVR K F++ P+ EA+ Q++ + H+F+ F N
Sbjct: 113 EPLQEEVK----VAVEDEDEF----EIVRTKRFDLKPMDAEEAVLQMDMLGHNFFVFSNA 164
Query: 276 ETGEINIVYKRKAGGYGVIIPKG 298
+G N+VYKRK G YG+I P+
Sbjct: 165 ISGSTNVVYKRKDGRYGLIEPEA 187
>gi|225027508|ref|ZP_03716700.1| hypothetical protein EUBHAL_01764 [Eubacterium hallii DSM 3353]
gi|224955147|gb|EEG36356.1| ribosomal subunit interface protein [Eubacterium hallii DSM 3353]
Length = 175
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ II GKNLE+T+ +K V +K K + K EV V LSV+ K +I +
Sbjct: 1 MRYIIYGKNLEVTEGLKQAVHDKFSK-LEKFFTPETEVQVTLSVQ-----KDNQIVEATI 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ K ++R E ++ +Y SID+ +++R +RK K K S +G+ FN
Sbjct: 55 PM---KGTILRVEPNSTDMYVSIDMAVDLLERMIRKYKTKISKYGKGELKFN-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
D EE+ DN I + K F + P+ V EA Q+E + H+F+ FRN ET
Sbjct: 104 --------DEFMEEDVDNHETVTITKSKRFAIKPMDVEEACVQMELLGHNFFVFRNAETF 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 156 EVNVVYKRKDKTYGLIEPE 174
>gi|15806102|ref|NP_294806.1| light-repressed protein A [Deinococcus radiodurans R1]
gi|32699733|sp|Q9RVE7.1|Y1082_DEIRA RecName: Full=Uncharacterized protein DR_1082
gi|6458813|gb|AAF10654.1|AE001958_8 light-repressed protein A, putative [Deinococcus radiodurans R1]
Length = 191
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 113/196 (57%), Gaps = 17/196 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+T+ ++ +VEEK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQLNV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR-EPVTQV 221
G++RAEE +YA+ID S +++R+LRK K R+MK R + R EP+
Sbjct: 63 PG-GIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLPGP 113
Query: 222 VENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E + + Q + V E IVR K FE+ P++ +A+ Q+E + HDFY F++ + G
Sbjct: 114 AEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-G 172
Query: 279 EINIVYKRKAGGYGVI 294
+ +VY+R+ G YG+I
Sbjct: 173 QTGVVYRRRDGHYGLI 188
>gi|166031027|ref|ZP_02233856.1| hypothetical protein DORFOR_00708 [Dorea formicigenerans ATCC
27755]
gi|166029294|gb|EDR48051.1| ribosomal subunit interface protein [Dorea formicigenerans ATCC
27755]
Length = 177
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 113/200 (56%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K+ VE K+GK + ++ E+ V LSV+ ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLKDAVESKLGK-LQRYFTPDTEIHVTLSVQKEH-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E++++ +Y SIDLV +I+R+LRK K K + F++
Sbjct: 53 TIPVKGN-IIRSEQESDDMYVSIDLVEEVIERQLRKYKNKLVAKNQEGNNFSK------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ E + ++ DEV IVR K F + P+ +A Q+E + H+F+ F N E
Sbjct: 105 -TLFETEESIED--------DEVKIVRTKRFGIKPMYPEDACVQMELLGHNFFVFFNAEN 155
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VYKRK G +G+I P+
Sbjct: 156 EEVNVVYKRKDGSFGLIEPE 175
>gi|229087666|ref|ZP_04219792.1| Ribosome-associated factor Y [Bacillus cereus Rock3-44]
gi|228695627|gb|EEL48486.1| Ribosome-associated factor Y [Bacillus cereus Rock3-44]
Length = 180
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSEK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETHSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 217 --PVTQVV--ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
P T + E+ A ++ +EDD +VR K F++ P+ V EAI Q++ + H+F+ F
Sbjct: 100 GSPKTTFILTESAATLEEVKEDDL----ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVF 155
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
N +T E N+VY RK G YG+I
Sbjct: 156 TNADTNETNVVYGRKDGKYGLI 177
>gi|333980676|ref|YP_004518621.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333824157|gb|AEG16820.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 173
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 29/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++G+N+E+T+ +K +VE+++GK V K+ L+ E V L+V R EV
Sbjct: 1 MKVQVRGRNVEVTNALKEYVEKRLGKLV-KYLDLIEEAQVTLTVEKDS-------HRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ +G++ R EE +YASIDLV +++++ + K GR + R
Sbjct: 53 TIPI--NGIILRGEESTGDMYASIDLVVEKLEKQIERYK------GRLYRRLGR------ 98
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q E A +EED IVR K F M P++V EA+ Q+ + H F+ F N +T
Sbjct: 99 --QNTEVKAGDNKKEEDG----PRIVRTKRFAMKPMSVDEAVMQMNLLGHSFFVFSNADT 152
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++N+VY+RK G YG+I P+
Sbjct: 153 EKVNVVYRRKDGNYGLIEPE 172
>gi|346308229|ref|ZP_08850350.1| hypothetical protein HMPREF9457_02059 [Dorea formicigenerans
4_6_53AFAA]
gi|345903526|gb|EGX73289.1| hypothetical protein HMPREF9457_02059 [Dorea formicigenerans
4_6_53AFAA]
Length = 177
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 114/199 (57%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K+ VE K+GK + ++ E+ V LSV+ ++ EV
Sbjct: 1 MKFIIIGKNIDVTPGLKDAVESKLGK-LQRYFTPDTEIHVTLSVQKEH-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E++++ +Y SIDLV +I+R+LRK K K ++ +G N K
Sbjct: 53 TIPVKGN-IIRSEQESDDMYVSIDLVEEVIERQLRKYKNKLV--AKNQEGNNFSKTLFET 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +E D +V+ IVR K F + P+ +A Q+E + H+F+ F N E
Sbjct: 110 EESIE-DGEVK------------IVRTKRFGIKPMYPEDACVQMELLGHNFFVFFNAENE 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK G +G+I P+
Sbjct: 157 EVNVVYKRKDGSFGLIEPE 175
>gi|384439973|ref|YP_005654697.1| Ribosomal subunit interface protein [Thermus sp. CCB_US3_UF1]
gi|359291106|gb|AEV16623.1| Ribosomal subunit interface protein [Thermus sp. CCB_US3_UF1]
Length = 186
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 18/202 (8%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KLI G+NLE+TD ++++VE K+ + + ++ + V LS+ G + R +
Sbjct: 1 MNVYKLI--GRNLEITDAIRDYVERKLSR-LDRYQNGELMAKVVLSLAGSAHVE--RKAK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLKV 214
EV + G+VR EE+ +YA+ID + ++ +L++ +E+ RH +G
Sbjct: 56 AEVQV-DLPGGLVRVEEEDPDLYAAIDRMVDRLETQLKRYRERRFIGKRHSYQG------ 108
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P +V + +A + EEE+ IVR+K FEM P+ EA Q+E + HDF+ FRN
Sbjct: 109 -PPPPEVRDLEALRKPEEEEGP----RIVRVKRFEMKPMDPEEAAFQMEALGHDFFVFRN 163
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
ET +IN++Y+RK G YG+I P
Sbjct: 164 AETDQINVIYRRKDGNYGLIEP 185
>gi|320450851|ref|YP_004202947.1| ribosomal subunit interface protein [Thermus scotoductus SA-01]
gi|320151020|gb|ADW22398.1| ribosomal subunit interface protein [Thermus scotoductus SA-01]
Length = 186
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 18/202 (8%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KLI G+NLE+TD ++ +VE K+ + + ++ + V LS+ G R +
Sbjct: 1 MNVYKLI--GRNLEITDAIREYVERKLSR-LDRYQNGELMAKVVLSLAGS--NHVARKAK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLKV 214
EV + G++R EE+ +YA+ID + ++ +L++ KE+ RH +G
Sbjct: 56 AEVQV-DLPGGLIRVEEEDPDLYAAIDRMVDRLETQLKRFKERRFIGKRHSYQG------ 108
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P +V + +A + EEE+ IVR+K FEM P+ EA Q+E + HDF+ FRN
Sbjct: 109 -PPPPEVQDLEALRKPEEEEG----PKIVRVKRFEMKPMDPEEAAFQMEALGHDFFVFRN 163
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
+T EIN++Y+RK G YG+I P
Sbjct: 164 AKTDEINVIYRRKDGNYGLIEP 185
>gi|335038976|ref|ZP_08532168.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldalkalibacillus thermarum TA2.A1]
gi|334181120|gb|EGL83693.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldalkalibacillus thermarum TA2.A1]
Length = 184
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 17/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T ++++VE+KVG+ + + +V V L V E E
Sbjct: 1 MKFNIRGENIEVTPALRDYVEKKVGRLERYFNEDITSDVYVTLKVTRDEHS-------VE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K ++RAEE + +YASIDLV ++R++RK K K R +L
Sbjct: 54 VTIPMPKL-LLRAEEKSLDMYASIDLVVEKLERQIRKYKTKIKRKFRQDGSMKQL----- 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q V A+ EEE D+ ++ IVR+K F + P+ EA+ Q++ + H+F+ F + ET
Sbjct: 108 -FQEVNGQAEGTHEEETDDKIE--IVRIKRFNLKPMDAEEAVLQMDLLGHNFFVFSDAET 164
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++++VYKRK G YG+I P+
Sbjct: 165 QKVSVVYKRKDGRYGLIQPE 184
>gi|306490825|gb|ADM94946.1| ribosome-associated protein Y [uncultured candidate division JS1
bacterium]
Length = 183
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 118/196 (60%), Gaps = 17/196 (8%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
LII+GK ELTD++++++ +K+ K + K+ + E +SV K I EVTL
Sbjct: 3 LIIRGKQFELTDSIESYIRKKMKK-LQKYFDQIMEAVATVSVE-----KNRHI--FEVTL 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
KK ++RAEE+++ +Y SID V ++R+L IK KE + ++ +N++K +T+
Sbjct: 55 QAKK-AIIRAEEESDNIYTSIDRVVEKLERQL--IKYKEKLYYKYNNEYNKIK-EANITE 110
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
++D +++++D IV+ K F + P++ EA Q+E + H FY F NEET +I
Sbjct: 111 QEKSDIIAKADDKDIK-----IVKTKKFVLKPMSPEEASLQMELLGHSFYVFNNEETDQI 165
Query: 281 NIVYKRKAGGYGVIIP 296
N++YKRK G +G+I P
Sbjct: 166 NVIYKRKDGNFGLIEP 181
>gi|452993795|emb|CCQ94611.1| putative sigma-54 modulation protein [Clostridium ultunense Esp]
Length = 176
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC-E 157
+KL GKN+E+T+ +K+ E+K+GK + K+ E +V SV R R+ E
Sbjct: 1 MKLNFVGKNMEVTEALKDVTEKKLGK-LDKYFQKDAEGNVTYSV--------ERNRKIIE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ ++RAEE ++ +YASID +++R++RK K K R+ G
Sbjct: 52 VTI-NLPGTILRAEESSDDMYASIDKAVDVLERQMRKHKTKL--QRRYNNG--------- 99
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
T EN + +EED +VR+K F+M P+ V EAI Q+E + H+F+ F N ++
Sbjct: 100 ETIRFENIMPLNEDEEDR----PKVVRIKRFDMKPMNVEEAILQMELLRHNFFVFMNADS 155
Query: 278 GEINIVYKRKAGGYGVIIPK 297
G++N++YKRK G YG+I P+
Sbjct: 156 GDLNVLYKRKDGNYGLIEPE 175
>gi|167748492|ref|ZP_02420619.1| hypothetical protein ANACAC_03236 [Anaerostipes caccae DSM 14662]
gi|317471977|ref|ZP_07931309.1| sigma 54 modulation protein/S30EA ribosomal protein [Anaerostipes
sp. 3_2_56FAA]
gi|167652484|gb|EDR96613.1| ribosomal subunit interface protein [Anaerostipes caccae DSM 14662]
gi|316900381|gb|EFV22363.1| sigma 54 modulation protein/S30EA ribosomal protein [Anaerostipes
sp. 3_2_56FAA]
Length = 176
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 28/199 (14%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRCEV 158
II GKN+E+T+ ++ +EEK+G+ +L ++D V LSV+ ++ EV
Sbjct: 3 FIISGKNIEVTEGIRAAIEEKLGRL---DKYLTDDIDIIVTLSVQKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K H ++RAE+D+ +Y SIDLV I++R++R+ K + G LK
Sbjct: 53 TIPMKGH-IIRAEQDSADMYVSIDLVIDILERQIRRYKTRLMSKKYEGAG---LKQEFID 108
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ +++ I+R K F + P+ V EA Q++ + H+F+ FRN +T
Sbjct: 109 KDEDVDEDEIR------------IIRSKKFAIKPMDVEEACIQMDLLGHNFFVFRNADTF 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 157 EVNVVYKRKGNTYGLIEPE 175
>gi|153811224|ref|ZP_01963892.1| hypothetical protein RUMOBE_01616 [Ruminococcus obeum ATCC 29174]
gi|149832722|gb|EDM87806.1| ribosomal subunit interface protein [Ruminococcus obeum ATCC 29174]
Length = 175
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ ++ +K VE+K+GK + ++ EV V LSV ++ EV
Sbjct: 1 MKFIISGKNITVSQGLKTAVEDKLGK-LERYFTPDTEVVVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + E +
Sbjct: 53 TI-PMKGNIIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQAAANFQK----EYL 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ E D +V+ I+R K F + P+ +A Q+E + H+F+ F N ET
Sbjct: 108 DKDYEEDEEVK------------IIRTKKFGIKPMYPEDACVQMELLGHNFFVFFNAETE 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK YG+I P+
Sbjct: 156 QVNVVYKRKGNTYGLIEPE 174
>gi|410659496|ref|YP_006911867.1| Ribosomal subunit interface protein [Dehalobacter sp. DCA]
gi|410662474|ref|YP_006914845.1| Ribosomal subunit interface protein [Dehalobacter sp. CF]
gi|409021851|gb|AFV03882.1| Ribosomal subunit interface protein [Dehalobacter sp. DCA]
gi|409024830|gb|AFV06860.1| Ribosomal subunit interface protein [Dehalobacter sp. CF]
Length = 176
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 115/196 (58%), Gaps = 28/196 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +++TD +K++VE++V K + K+S ++ V LSV +R EVT
Sbjct: 5 VRGKQMKMTDALKDYVEKRVRK-LEKYSDDFLDIQVMLSVEKER-------QRVEVT--A 54
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-VREPVTQ 220
+G ++R EE+ + +Y+SIDLV ++R++ K +++ G R+K +E +
Sbjct: 55 PLNGFLLRGEEETDDMYSSIDLVVDKLERQMEKYRKR--------IGKKRIKSTKEEPSY 106
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
++E+D ++ F + IV+ K F ++V EA Q++ + H+F+ F N +TG+I
Sbjct: 107 ILEDDEEI--------FDNNSIVKTKKFSAKLMSVDEAAMQMDLIGHNFFVFANADTGQI 158
Query: 281 NIVYKRKAGGYGVIIP 296
N+VY+RK GGYG++ P
Sbjct: 159 NVVYRRKHGGYGLLEP 174
>gi|152977399|ref|YP_001376916.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
cytotoxicus NVH 391-98]
gi|152026151|gb|ABS23921.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
cytotoxicus NVH 391-98]
Length = 179
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 110/200 (55%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ EV V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-IERYFDTFPEVKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETHSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T + D Q E ++D +VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSAKTAFILPDQLGQEEVQEDELE---LVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 156
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T E NIVY RK G YG+I
Sbjct: 157 ADTNETNIVYGRKDGKYGLI 176
>gi|375010254|ref|YP_004983887.1| ribosomal subunit interface protein [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359289103|gb|AEV20787.1| Ribosomal subunit interface protein [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 182
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 111/192 (57%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE+K+GK + ++ +V V ++++ G+G + EVT+
Sbjct: 5 VRGENLEVTPALREYVEKKIGK-LERYFDGTEDVHVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + R +R K + V
Sbjct: 59 MPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLR-----DREKEAKLAAPVS 113
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ ++EEE + IVR K F + P+ EAI Q+ + H+F+ F N ET NI
Sbjct: 114 IGASAAENEEEFE------IVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNI 167
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 168 VYRRKDGKYGLI 179
>gi|149182560|ref|ZP_01861032.1| ribosomal subunit interface protein [Bacillus sp. SG-1]
gi|148849752|gb|EDL63930.1| ribosomal subunit interface protein [Bacillus sp. SG-1]
Length = 189
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 111/194 (57%), Gaps = 15/194 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +++HVE K+GK + ++ + + DV ++++ K + EVT+
Sbjct: 6 IRGENIEVTPAIRDHVENKIGK-LNRYFNETPDADVHVNLKVYPDKKT----KVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR--LKVREPVTQ 220
H V+RAEE E +YA+IDL+ ++R++RK K K + R KG + +E +T
Sbjct: 60 MPHLVLRAEERHEDMYAAIDLIVDKLERQIRKHKTKVNRKMRE-KGSPKEFFAAQEGLTT 118
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
N+ ++EE D+ +VR K F + P+ EAI Q+ + H F+ F + ET
Sbjct: 119 SQLNEKARETEENDE------VVRTKQFNLKPMDSEEAILQMNLLGHSFFIFTDAETNAT 172
Query: 281 NIVYKRKAGGYGVI 294
NIVYKR+ G YG+I
Sbjct: 173 NIVYKRRDGKYGLI 186
>gi|89100631|ref|ZP_01173489.1| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911]
gi|89084655|gb|EAR63798.1| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911]
Length = 184
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+ K + K+ + +V ++++ + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKIAK-LEKYFTETPDANVHVNLKTYNNNRS----KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL---KVREPVT 219
++ V+RAEED E +YA+IDL+ ++R++RK K K + R KG L EP
Sbjct: 59 MQNLVLRAEEDHEDMYAAIDLIVDKLERQIRKHKTKVNRKFRE-KGSPTLMFASFDEPEA 117
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
V+E E+DN D +VR K F++ P+ EAI Q+ + H FY F N ET
Sbjct: 118 PVLE---------EEDN--DLEVVRQKSFDLKPMDNEEAILQMNLLGHSFYVFTNAETNR 166
Query: 280 INIVYKRKAGGYGVI 294
N+VYKRK G YG+I
Sbjct: 167 TNVVYKRKDGRYGLI 181
>gi|339442561|ref|YP_004708566.1| hypothetical protein CXIVA_14980 [Clostridium sp. SY8519]
gi|338901962|dbj|BAK47464.1| hypothetical protein CXIVA_14980 [Clostridium sp. SY8519]
Length = 177
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 110/198 (55%), Gaps = 23/198 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+II GKN+++T +++ VE+K+ K + +E + ++++ KG + EVT+
Sbjct: 3 IIIVGKNIDVTAGLRSVVEDKLSKL---EKYFTQETTIHVTMKAD---KGRH--KIEVTI 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++RAE+ +E +Y +IDLV +I+R+L+K K K + + R + E +
Sbjct: 55 PLKGR-IIRAEQVSEDMYQTIDLVEEVIERQLKKYKNKLINRKHQADDYFRPEYIEKEYE 113
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+++ ++ R+K FEM P+ + +A Q+E + H+FY F N ET E
Sbjct: 114 DEDDEVQIE--------------RVKHFEMKPMFIEDACVQMELLGHNFYVFINAETDET 159
Query: 281 NIVYKRKAGGYGVIIPKG 298
N+VYKRK GGYG+I P+
Sbjct: 160 NVVYKRKNGGYGLIEPEA 177
>gi|138896686|ref|YP_001127139.1| ribosomal subunit interface protein [Geobacillus
thermodenitrificans NG80-2]
gi|134268199|gb|ABO68394.1| Ribosomal subunit interface protein [Geobacillus
thermodenitrificans NG80-2]
Length = 182
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 111/196 (56%), Gaps = 25/196 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+GK + ++ V V ++++ G+G + EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGK-LERYFDDTDHVHVNVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM-KGFNRLKVREPV--- 218
H ++RAEE + +YA+IDLV+ ++R++RK K K + R KG +K+ PV
Sbjct: 59 IPHLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKG---VKLAAPVPNG 115
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
VEND + + IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 116 AAAVENDEEFE------------IVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETN 163
Query: 279 EINIVYKRKAGGYGVI 294
NIVY+RK G YG+I
Sbjct: 164 RTNIVYRRKDGRYGLI 179
>gi|225568877|ref|ZP_03777902.1| hypothetical protein CLOHYLEM_04956 [Clostridium hylemonae DSM
15053]
gi|225162376|gb|EEG74995.1| hypothetical protein CLOHYLEM_04956 [Clostridium hylemonae DSM
15053]
Length = 178
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T ++ VE K+GK + K+ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIDVTPGLRETVEHKLGK-LEKYFTSDTEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K RH +G N +
Sbjct: 53 TIPVKGN-IIRSEQVSSDMYVSIDLVEEVIERQLRKYKNKLV--ARHQEGGNFRQEFFES 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E+D +V+ IVR K F + P+ +A Q++ + HDF+ F N +T
Sbjct: 110 EYATEDDDEVK------------IVRTKRFGIKPMYPEDACIQMDLLGHDFFVFCNADTD 157
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VY+RK G +G+I P+
Sbjct: 158 EVNVVYRRKNGTFGLIEPE 176
>gi|224072520|ref|XP_002335920.1| predicted protein [Populus trichocarpa]
gi|224161676|ref|XP_002338359.1| predicted protein [Populus trichocarpa]
gi|222836371|gb|EEE74778.1| predicted protein [Populus trichocarpa]
gi|222872022|gb|EEF09153.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 61/95 (64%), Gaps = 17/95 (17%)
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGPRIR+ EDAE + + KLRKIK+KESDHGRHM
Sbjct: 1 MGKGPRIRK----------------EDAEKSKQVLIWCRQLFN-KLRKIKDKESDHGRHM 43
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEV 241
KGFN+LKVREP++QVVENDAD S+ +DD+ +DEV
Sbjct: 44 KGFNKLKVREPMSQVVENDADTVSQRKDDDNLDEV 78
>gi|256827729|ref|YP_003151688.1| ribosomal subunit interface protein [Cryptobacterium curtum DSM
15641]
gi|256583872|gb|ACU95006.1| ribosomal subunit interface protein [Cryptobacterium curtum DSM
15641]
Length = 188
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 107/194 (55%), Gaps = 16/194 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+ G+ + +TD +K++ EEK+G + V+ L+ EV L V P I CEVT+
Sbjct: 5 VTGRKMPVTDALKSYAEEKIGNSMKVMDIDPLIAEV--ILHVEQNRAIARPAI--CEVTM 60
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K H ++R EE E +YA+ID+ ++ + R+LRK K + + + +R +
Sbjct: 61 TAKGH-IIRVEEHEEDMYAAIDVAAAKVLRQLRKFKTRVVERNTRTDAAS---IRSAKSA 116
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
++ DA + E DD +VR K ++ PLT EA+ +++ + HDF+ + + +T E
Sbjct: 117 KLDLDA-LMEELSDDE-----VVREKSIDLQPLTEEEALVEIDLLGHDFFAYTDRDTNEF 170
Query: 281 NIVYKRKAGGYGVI 294
I+Y+R+ GGYG++
Sbjct: 171 RILYRRRNGGYGLL 184
>gi|373496161|ref|ZP_09586709.1| ribosomal subunit interface protein [Fusobacterium sp. 12_1B]
gi|371966072|gb|EHO83564.1| ribosomal subunit interface protein [Fusobacterium sp. 12_1B]
Length = 183
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GK L +TD +K + E K+G+ H ++ ++DV LS + G EV
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGRVEKYHDSII-DLDVSLSAVRTKTGSS---HTAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ + + D + +YA+ID VS II+ +L+K KEK + + + G ++K +P
Sbjct: 57 LAYLSGSTLKASCTDTD-LYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIKY-DPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T VE +A V +V++ + P+ + EAI QLE ++ FY F N ETG
Sbjct: 115 TNTVEKEAAVN------------VVKV-YLPPKPMDIEEAILQLELLNRAFYPFTNCETG 161
Query: 279 EINIVYKRKAGGYGVIIP 296
E+NIVYKRK G Y + P
Sbjct: 162 EMNIVYKRKDGDYAHVEP 179
>gi|295107859|emb|CBL21812.1| SSU ribosomal protein S30P/sigma 54 modulation protein
[Ruminococcus obeum A2-162]
Length = 175
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ ++ +K VE+K+GK + ++ EV V LSV ++ EV
Sbjct: 1 MKFIISGKNITVSPGLKTAVEDKLGK-LERYFTPDTEVIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + E +
Sbjct: 53 TI-PMKGNIIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQAAANFQK----EYL 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ E D +V+ I+R K F + P+ +A Q+E + H+F+ F N ET
Sbjct: 108 DKEYEEDDEVK------------IIRTKKFGIKPMYPEDACVQMELLGHNFFVFFNAETE 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK YG+I P+
Sbjct: 156 QVNVVYKRKGNTYGLIEPE 174
>gi|340757013|ref|ZP_08693617.1| ribosome-associated protein Y [Fusobacterium varium ATCC 27725]
gi|251834279|gb|EES62842.1| ribosome-associated protein Y [Fusobacterium varium ATCC 27725]
Length = 183
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GK L +TD +K + E K+G+ H ++ E+DV LS + G EV
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGRVEKYHDSII-ELDVSLSAVRTKTGSS---HTAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ + + D + +YA+ID VS II+ +L+K KEK + + + G ++K P
Sbjct: 57 LAYLSGSTLKASCTDTD-LYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIKYN-PE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T VE +A V +V++ + P+ + EAI QLE ++ FY F N ETG
Sbjct: 115 TNTVEKEAAVN------------VVKV-YLPPKPMDIEEAILQLELLNRVFYPFTNCETG 161
Query: 279 EINIVYKRKAGGYGVIIP 296
E+NIVYKRK G Y + P
Sbjct: 162 EMNIVYKRKDGDYAHVEP 179
>gi|261420552|ref|YP_003254234.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC61]
gi|319768221|ref|YP_004133722.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC52]
gi|261377009|gb|ACX79752.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC61]
gi|317113087|gb|ADU95579.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y412MC52]
Length = 182
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 112/192 (58%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ +VE+K+GK + ++ +V+V ++++ G+G + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKIGK-LERYFDRTDDVNVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + R +R K + V
Sbjct: 59 IPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLR-----DREKEAKLAAPVS 113
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ ++EEE + IVR K F + P+ EAI Q+ + H+F+ F N ET NI
Sbjct: 114 IGASAAENEEEFE------IVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNI 167
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 168 VYRRKDGKYGLI 179
>gi|323489910|ref|ZP_08095132.1| hypothetical protein GPDM_11180 [Planococcus donghaensis MPA1U2]
gi|323396417|gb|EGA89241.1| hypothetical protein GPDM_11180 [Planococcus donghaensis MPA1U2]
Length = 189
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 102/192 (53%), Gaps = 13/192 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +++H+E+K+ K + + V + + EVT+
Sbjct: 6 IRGENIEVTPAIRDHIEKKIEKI---ERYFTDGANATAMVNLKTYNHSQT--KVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA+IDL+ S ++R++RK K K + R G V
Sbjct: 60 MKNLTLRAEERHDDLYAAIDLIVSKLERQIRKYKTKVNRKFRDRDGMG------VSFAVA 113
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
END QS+ + D D IVR K F++ P+ EA+ Q+ + H F+ F + E+ E NI
Sbjct: 114 ENDTRHQSDSDSDE-EDFTIVRTKQFDLKPMDEEEAVLQMNMLGHSFFVFTDAESNETNI 172
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 173 VYKRKDGSYGLI 184
>gi|291294809|ref|YP_003506207.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Meiothermus ruber DSM 1279]
gi|290469768|gb|ADD27187.1| sigma 54 modulation protein/ribosomal protein S30EA [Meiothermus
ruber DSM 1279]
Length = 183
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 112/204 (54%), Gaps = 26/204 (12%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ KL+ G+ +E+T+ +KN++++K+ + + V E V LS+ +GPRI R
Sbjct: 1 MNVYKLV--GRQIEITEALKNYLDKKMARLDRYFDNNV-EAKVVLSM-----AQGPRIER 52
Query: 156 ---CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
E+ + G+VR EE +YA+ID ++ +L++ KE+ RH
Sbjct: 53 KAKAEIQVNVPG-GIVRVEEADPDMYAAIDRSIDRLEYQLKRYKERHFQRARH------- 104
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
V E V + A +++EEE + IVR K F M P+T +A ++E + HDF+ F
Sbjct: 105 AVPEAV---LAGSAHLETEEE----AEPRIVRTKRFHMKPMTPEDAAFEMEALGHDFFVF 157
Query: 273 RNEETGEINIVYKRKAGGYGVIIP 296
RN +T +IN++Y+R+ G YG+I P
Sbjct: 158 RNADTEQINVIYRRRDGNYGLIEP 181
>gi|228993894|ref|ZP_04153797.1| Ribosome-associated factor Y [Bacillus pseudomycoides DSM 12442]
gi|228999930|ref|ZP_04159502.1| Ribosome-associated factor Y [Bacillus mycoides Rock3-17]
gi|229007483|ref|ZP_04165080.1| Ribosome-associated factor Y [Bacillus mycoides Rock1-4]
gi|228753871|gb|EEM03312.1| Ribosome-associated factor Y [Bacillus mycoides Rock1-4]
gi|228759872|gb|EEM08846.1| Ribosome-associated factor Y [Bacillus mycoides Rock3-17]
gi|228765845|gb|EEM14496.1| Ribosome-associated factor Y [Bacillus pseudomycoides DSM 12442]
Length = 180
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 27/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ EV V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEVKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
T+ FT ++RAEE +YA+IDLV ++R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETHSDMYAAIDLVVDKVERQIRK----------HKTKVNR-KLREK 99
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P T + + EE ++ ++ +VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSPKTAFILTEPAATLEEVKEDELE--LVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 157
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T E N+VY RK G YG+I
Sbjct: 158 ADTNETNVVYGRKDGKYGLI 177
>gi|345861350|ref|ZP_08813616.1| ribosome-associated protein Y [Desulfosporosinus sp. OT]
gi|344325615|gb|EGW37127.1| ribosome-associated protein Y [Desulfosporosinus sp. OT]
Length = 175
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 109/200 (54%), Gaps = 27/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II+GK++ELTD +K +V ++VGK + K+S +V V L V R EV
Sbjct: 1 MNIIIRGKHIELTDALKEYVMKRVGK-LEKYSDEFMDVQVTLLVERDR-------HRVEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T HG ++R EE+ E +Y+SID+V ++R++ K + + + R LK EP
Sbjct: 53 T--APIHGMILRGEEETEDMYSSIDMVVEKLERQIDKYRTRINKRMRS----KVLKDHEP 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q V ND + EE IVR K F P++V EAI Q+ + H F+ F N E+
Sbjct: 107 -KQAVMND---EPHEE--------IVRNKKFPAKPMSVEEAIMQMNLIGHTFFVFTNAES 154
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VY R G YG++ P+
Sbjct: 155 QEMNVVYLRNNGDYGLLQPQ 174
>gi|404368966|ref|ZP_10974313.1| ribosomal subunit interface protein [Fusobacterium ulcerans ATCC
49185]
gi|313688260|gb|EFS25095.1| ribosomal subunit interface protein [Fusobacterium ulcerans ATCC
49185]
Length = 183
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 105/198 (53%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GK L +TD +K + E K+G+ H ++ ++DV LS + G EV
Sbjct: 1 MKMSIHGKQLVVTDAIKKYAETKLGRVEKYHDSII-DLDVSLSAVRTKTGSS---HTAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ + + D + +YA+ID VS II+ +L+K KEK + + + G ++K +P
Sbjct: 57 LAYLSGSTLKASCTDTD-LYAAIDQVSDIIEAQLKKHKEKRAINYGQVPGVKKIK-YDPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T VE +A V +V++ + P+ + EAI QLE ++ FY F N ETG
Sbjct: 115 TNTVEKEAAVN------------VVKV-YLPPKPMDIEEAILQLELLNRVFYPFTNCETG 161
Query: 279 EINIVYKRKAGGYGVIIP 296
E+NIVYKRK G Y + P
Sbjct: 162 EMNIVYKRKDGDYAHVEP 179
>gi|154506052|ref|ZP_02042790.1| hypothetical protein RUMGNA_03594 [Ruminococcus gnavus ATCC 29149]
gi|153793551|gb|EDN75971.1| ribosomal subunit interface protein [Ruminococcus gnavus ATCC
29149]
Length = 185
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 113/205 (55%), Gaps = 28/205 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+++T +K+ +E+K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MNFIISGKNIDVTPGLKDAIEQKLGK-LERYFTPETEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--- 215
T+ K + ++R+E+ ++ +Y S+DLV +I+R+LRK K N+L R
Sbjct: 53 TIPVKGN-IIRSEQTSDDMYVSVDLVEEVIERQLRKYK-------------NKLVARSQG 98
Query: 216 EPVTQVVENDADVQS-EEEDDNFVDEVI--VRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
P N+ + E EDD VD+ I VR K F + P+ +A Q++ + H F+ F
Sbjct: 99 HPTASGSGNNFKKEFFESEDDTSVDDEIRIVRTKRFGIKPMYPEDACIQMDLLGHAFFVF 158
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
N ET E+N+VYKRK G +G+I P+
Sbjct: 159 CNAETDEVNVVYKRKDGSFGLIEPE 183
>gi|366163790|ref|ZP_09463545.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Acetivibrio cellulolyticus CD2]
Length = 176
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 109/198 (55%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I+ GKN+E+TD ++ +KVGK + K + E + +SV+ K +I EV
Sbjct: 1 MRFIVTGKNIEVTDALREKAIKKVGK-IEKFFNKNTEAHITMSVQ-----KNRQI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G++RA+E+ + +YASID V ++ ++R+ N+ K++
Sbjct: 53 TI-PFKGGLLRAQEENDDMYASIDKVVDSLEGQIRR---------------NKTKIQRKY 96
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + V E+ +D D +VR K F + P+T+ EAI Q+ + H+F+ F N ET
Sbjct: 97 HESDLSFDSVNFEDHEDEVNDFKVVRSKKFSIKPMTIEEAILQMNMLGHEFFMFSNSETM 156
Query: 279 EINIVYKRKAGGYGVIIP 296
E N+VY+RK G YG+I P
Sbjct: 157 EANVVYRRKDGNYGLIEP 174
>gi|253580000|ref|ZP_04857267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848519|gb|EES76482.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 175
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+ +T+ +K V++K+ K + ++ EV V LSV ++ EV
Sbjct: 1 MKFIISGKNITVTEGLKTAVQDKLSK-LERYFTPDTEVVVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K D + F + +
Sbjct: 53 TIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIVDKQQAAANFQKAYL---- 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
D D +EE I+R K F + P+ +A Q+E + H+F+ F N ET
Sbjct: 108 ------DKDYDEDEEVK------IIRTKKFGIKPMYPEDACVQMELLGHNFFVFYNAETE 155
Query: 279 EINIVYKRKAGGYGVIIP 296
++N+VYKRK YG+I P
Sbjct: 156 QVNVVYKRKGNTYGLIEP 173
>gi|392971363|ref|ZP_10336759.1| ribosome-associated protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|403047240|ref|ZP_10902708.1| ribosome-associated protein Y [Staphylococcus sp. OJ82]
gi|392510755|emb|CCI60031.1| ribosome-associated protein [Staphylococcus equorum subsp. equorum
Mu2]
gi|402762774|gb|EJX16868.1| ribosome-associated protein Y [Staphylococcus sp. OJ82]
Length = 188
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 110/196 (56%), Gaps = 13/196 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNAIAHVKVKTYQNSAA----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL++ ++R++RK K + + NR + +
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLINGKLERQVRKYKTR-------VNRKNRNRGEQEA 108
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +++ + + DDN D I+R K F + P+ EA+ Q++ + HDF+ F + ET
Sbjct: 109 FASLPQESEAEEIQNDDNESDIEIIRSKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRETD 168
Query: 279 EINIVYKRKAGGYGVI 294
+IVYKR+ G YG+I
Sbjct: 169 GTSIVYKRRDGKYGLI 184
>gi|354558917|ref|ZP_08978170.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfitobacterium metallireducens DSM 15288]
gi|353545241|gb|EHC14693.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfitobacterium metallireducens DSM 15288]
Length = 175
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 112/201 (55%), Gaps = 27/201 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++I+GK++E+TD +K +V ++VGK + K+S +V V L V G R EV
Sbjct: 1 MNIMIRGKHIEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T HG++ R EE++ +YASIDLV ++R++ K + + + R LK EP
Sbjct: 53 T--APIHGIILRGEEESTDMYASIDLVVEKLERQIDKYRTRINKRMRS----KVLKDHEP 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V +++ EEE +VR K F + P++V EAI Q+ + H+F+ F N ++
Sbjct: 107 AHPV-----EIEDEEEK-------VVRDKKFTLKPMSVEEAIMQMNLIGHNFFVFTNSDS 154
Query: 278 GEINIVYKRKAGGYGVIIPKG 298
+N+VY+R G YG++ P+
Sbjct: 155 QAVNVVYRRYNGDYGLLEPEA 175
>gi|345023054|ref|ZP_08786667.1| hypothetical protein OTW25_17386 [Ornithinibacillus scapharcae
TW25]
Length = 182
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 115/205 (56%), Gaps = 32/205 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+NL++T++++ +VE+K+GK + K+ V+ EV V LSV + +R
Sbjct: 1 MKFNIRGENLKVTESIREYVEKKIGK-LEKYFDSVQTSEVYVNLSVYNNK-------QRI 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-----MKGFNR 211
EVT+ ++RAEE+ +YA+IDLV ++R++RK K K + R G N
Sbjct: 53 EVTI-PMTSLLLRAEEEHTDLYAAIDLVLDKLERQIRKYKTKVNRKPRQNGMPKYIGGNL 111
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
++ E + +V E + IV+ K F++ P+ EA+ Q++ + H FY
Sbjct: 112 AEIPEVLDEVEEME----------------IVKTKRFDLKPMDPEEAVLQMDLLGHAFYV 155
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
F+N +GE N+VY+RK G YG+I P
Sbjct: 156 FQNAVSGETNVVYRRKDGKYGLIEP 180
>gi|121535515|ref|ZP_01667324.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermosinus
carboxydivorans Nor1]
gi|121305934|gb|EAX46867.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermosinus
carboxydivorans Nor1]
Length = 174
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 26/197 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+++T +K++V ++VGK + K+ + E+ V L+V KG I EVT+
Sbjct: 3 IIVRGKNIDVTPALKDYVAKRVGK-ITKYFDALGEITVILTVE-----KGRHI--VEVTV 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++R EE +YASIDLV +++++ K K K + +L+ T
Sbjct: 55 PVNGM-LLRGEEATTDMYASIDLVIEKLEKQIEKYKTKIA---------RKLRAGTFKTD 104
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+V + E ED +V+ K F + P+ V EAI Q+ ++HDFY F N ET ++
Sbjct: 105 LVAGNG---GESEDFR-----VVKTKRFPVKPMDVEEAIMQMNLINHDFYVFMNAETEQV 156
Query: 281 NIVYKRKAGGYGVIIPK 297
N++Y+RK G YG+I P+
Sbjct: 157 NVIYRRKDGNYGLIEPE 173
>gi|153814581|ref|ZP_01967249.1| hypothetical protein RUMTOR_00795 [Ruminococcus torques ATCC 27756]
gi|145848075|gb|EDK24993.1| ribosomal subunit interface protein [Ruminococcus torques ATCC
27756]
Length = 198
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 36/216 (16%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
+ L+S+ II GKN+E+T +K +E+K+GK + ++ E+ V LSV G
Sbjct: 7 YKKELNSMNFIISGKNIEVTPGLKEAIEQKLGK-LERYFTPETEIIVTLSVEKGR----- 60
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
++ EVT+ K ++R+E+ + +Y SIDLV +I+R+LRK K K +
Sbjct: 61 --QKIEVTI-PVKGSIIRSEQTSSDMYVSIDLVEEVIERQLRKYKNKLVAKSQG------ 111
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEV----------IVRMKFFEMPPLTVSEAIEQ 261
A V S F++ IVR K F + P+ +A Q
Sbjct: 112 -----------HPTAAVPSGSIKKEFIESDDESSDDDEIRIVRTKKFGIKPMFPEDACIQ 160
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
+E + H F+ F N ET E+N+VYKRK G +G+I P+
Sbjct: 161 MELLGHSFFVFSNAETDEVNVVYKRKDGSFGLIEPE 196
>gi|22536521|ref|NP_687372.1| ribosomal subunit interface protein [Streptococcus agalactiae
2603V/R]
gi|25010400|ref|NP_734795.1| ribosomal subunit interface protein [Streptococcus agalactiae
NEM316]
gi|76787963|ref|YP_329060.1| ribosomal subunit interface protein [Streptococcus agalactiae A909]
gi|76797828|ref|ZP_00780093.1| ribosomal subunit interface protein [Streptococcus agalactiae
18RS21]
gi|77406955|ref|ZP_00783974.1| ribosomal subunit interface protein [Streptococcus agalactiae H36B]
gi|77410652|ref|ZP_00787012.1| ribosomal subunit interface protein [Streptococcus agalactiae
CJB111]
gi|406708860|ref|YP_006763586.1| ribosomal subunit interface protein [Streptococcus agalactiae
GD201008-001]
gi|424050094|ref|ZP_17787644.1| ribosomal subunit interface protein [Streptococcus agalactiae
ZQ0910]
gi|22533354|gb|AAM99244.1|AE014207_5 ribosomal subunit interface protein [Streptococcus agalactiae
2603V/R]
gi|23094752|emb|CAD45971.1| unknown [Streptococcus agalactiae NEM316]
gi|76563020|gb|ABA45604.1| ribosomal subunit interface protein [Streptococcus agalactiae A909]
gi|76586842|gb|EAO63335.1| ribosomal subunit interface protein [Streptococcus agalactiae
18RS21]
gi|77163367|gb|EAO74318.1| ribosomal subunit interface protein [Streptococcus agalactiae
CJB111]
gi|77174433|gb|EAO77283.1| ribosomal subunit interface protein [Streptococcus agalactiae H36B]
gi|389648500|gb|EIM70005.1| ribosomal subunit interface protein [Streptococcus agalactiae
ZQ0910]
gi|406649745|gb|AFS45146.1| ribosomal subunit interface protein [Streptococcus agalactiae
GD201008-001]
Length = 184
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 113/201 (56%), Gaps = 18/201 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++ +VE K+ K V K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEAQELDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILID-SITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE---------KIPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+QV + + + +EE V + IVR K + P+ V EA+ Q+E + HDF+ + + E
Sbjct: 107 SQVFTTEFEAEPDEE---AVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDN 163
Query: 279 EINIVYKRKAGGYGVIIPKGN 299
N++YKR+ G G+I KGN
Sbjct: 164 TTNVLYKREDGELGLIEAKGN 184
>gi|196249389|ref|ZP_03148087.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. G11MC16]
gi|196211146|gb|EDY05907.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. G11MC16]
Length = 182
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 25/196 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+GK + ++ V V ++++ G+G + EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGK-LERYFDDTDHVHVNVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM-KGFNRLKVREPV--- 218
H ++RAEE + +YA+IDLV+ ++R++RK K K + R KG +K+ PV
Sbjct: 59 IPHLLLRAEERHDDMYAAIDLVTDKLERQIRKHKTKVNRKLRDREKG---VKLAAPVPNG 115
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
END + + IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 116 AAAAENDEEFE------------IVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETN 163
Query: 279 EINIVYKRKAGGYGVI 294
NIVY+RK G YG+I
Sbjct: 164 RTNIVYRRKDGRYGLI 179
>gi|32307586|gb|AAP79198.1| ribosomal protein rpS22 [Bigelowiella natans]
Length = 170
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 89/156 (57%), Gaps = 15/156 (9%)
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
+ EVT++ K V+R + + Y+SIDLV+ ++ RKLRK KE++ G+ R
Sbjct: 15 KIEVTVYVKDSKVIRGSVSSVSEYSSIDLVTDLVNRKLRKYKERK--EGKRTASGVRTFY 72
Query: 215 REPVTQ-------VVENDADVQSEE-----EDDNFVDEV-IVRMKFFEMPPLTVSEAIEQ 261
++ V+ DVQ EE E V++V +VR K F MPP+++ +A
Sbjct: 73 TNDISDSSDVEGAAVQGQDDVQQEEYSGIPEGYAPVEDVSVVRRKKFPMPPISIEDATLC 132
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
L+ +DHDFY FRN ET EIN+VY+R GG G+I P+
Sbjct: 133 LDYLDHDFYVFRNSETKEINVVYRRAEGGVGLIEPE 168
>gi|392395512|ref|YP_006432114.1| ribosome-associated protein [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526590|gb|AFM02321.1| ribosome-associated protein Y (PSrp-1) [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 175
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 27/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +E+TD +K +V ++VGK + K+S +V V L V G R EVT
Sbjct: 5 VRGKQMEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEVT--A 54
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
HG ++R EE++ +YASIDLV ++R++ K + + + R++ +
Sbjct: 55 PLHGMILRGEEESGDMYASIDLVVEKLERQIDKYRTRIN---------KRMRTKVLKDHE 105
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+E+ A + E E+ +VR K F P++V EAI Q+ V H+FY F N +T IN
Sbjct: 106 IEHPALHEDETEE-------VVRHKKFGTKPMSVEEAIMQMNLVGHNFYAFTNMDTNAIN 158
Query: 282 IVYKRKAGGYGVIIPK 297
+VY+R+ G YG++ P+
Sbjct: 159 VVYRRRLGDYGLLEPE 174
>gi|392427779|ref|YP_006468773.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus
acidiphilus SJ4]
gi|391357742|gb|AFM43441.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus
acidiphilus SJ4]
Length = 174
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +II+GK++ELTD +K +V ++VGK + K S +V V L V R EV
Sbjct: 1 MNIIIRGKHIELTDALKEYVTKRVGK-LEKFSDEFMDVQVTLLVERDR-------HRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T HG++ R EE+ E +Y+SID+V ++R++ K + + N+ ++R
Sbjct: 53 T--APIHGIILRGEEETEDMYSSIDMVVEKLERQIDKYRTR----------INK-RMRSK 99
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V + E A E ++ +VR K F + P++V EAI Q+ + H F+ F N ET
Sbjct: 100 VMKDHEQPATATEEPREE------VVRQKKFPVKPMSVEEAIMQMNLIGHTFFVFTNSET 153
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VY R +G YG++ P+
Sbjct: 154 QEMNVVYLRNSGDYGLLQPQ 173
>gi|338814370|ref|ZP_08626391.1| ribosomal subunit interface protein [Acetonema longum DSM 6540]
gi|337273692|gb|EGO62308.1| ribosomal subunit interface protein [Acetonema longum DSM 6540]
Length = 175
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 114/196 (58%), Gaps = 28/196 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+++T +K+HVE+++GK + K+ + E+ V L+V KG I EVT+
Sbjct: 5 VRGKNIDVTPALKDHVEKRIGK-ITKYFDNIGEIAVVLAVE-----KGRHI--VEVTVPV 56
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G++ R EE +YASIDLV +++++ K K K S ++R+ + +V
Sbjct: 57 --NGILLRGEESTTDMYASIDLVIEKLEKQIGKYKTKLSR-----------RLRDGMLKV 103
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
D + +D+F +V+ K F + P+ V EAI Q+ ++HDFY F N +T ++N
Sbjct: 104 ---DLIPDNSGGNDDFK---VVKTKRFAIKPMDVEEAIMQMNLINHDFYVFMNADTEDVN 157
Query: 282 IVYKRKAGGYGVIIPK 297
++Y+RK G YG+I P+
Sbjct: 158 VIYRRKDGHYGLIEPE 173
>gi|302872501|ref|YP_003841137.1| ribosomal subunit interface protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302575360|gb|ADL43151.1| ribosomal subunit interface protein [Caldicellulosiruptor
obsidiansis OB47]
Length = 181
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKN+E+TD +K+ +E+K+ K + ++ L +V V LSV K I EVT+
Sbjct: 3 FIISGKNIEVTDALKDRIEKKLSK-LERYIKLDTDVHVTLSVE-----KISHI--IEVTI 54
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
HG ++RAEE + +Y++IDLV ++R++RK K K + + ++ +
Sbjct: 55 --PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKKEKDVESLRYMTYAPEEP 112
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
+ E++ + + VI + K F + P++V EAI Q+ + H+F+ F N++T +
Sbjct: 113 EKEESEENGEF----------VIAKTKKFPIKPMSVEEAILQMNLLGHNFFVFLNQDTDK 162
Query: 280 INIVYKRKAGGYGVIIP 296
+N+VYKRK G YG+I P
Sbjct: 163 VNVVYKRKDGAYGIIEP 179
>gi|269216146|ref|ZP_06160000.1| ribosomal subunit interface protein [Slackia exigua ATCC 700122]
gi|269130405|gb|EEZ61483.1| ribosomal subunit interface protein [Slackia exigua ATCC 700122]
Length = 189
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 24/200 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ + +TD+++++ EK+G ++ E +V L + P I CEVTL
Sbjct: 8 VTGRRITVTDSLRDYAIEKIGNSMKVLDDYSIEAEVILRIEKSHVV--PCI--CEVTLRP 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
K H V+R EE +YA+ID+ ++ + R+LRK K + DH ++RE +
Sbjct: 64 KGH-VIRVEERDTDMYAAIDIAAAKVVRQLRKYKTRVIDH----------RMRETLKGAE 112
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
T V D D EE D+ IVR+K E P+T EA+ Q++ + HDF+ + + ++
Sbjct: 113 GTPVEPTDFDKLMEE----LSDDEIVRVKEVEYSPMTEEEALIQIDLLGHDFFVYTDRDS 168
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++ +VY+R GGYG++ PK
Sbjct: 169 NDVQVVYRRSNGGYGMLKPK 188
>gi|402828529|ref|ZP_10877416.1| ribosomal subunit interface protein [Slackia sp. CM382]
gi|402286337|gb|EJU34812.1| ribosomal subunit interface protein [Slackia sp. CM382]
Length = 186
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 24/200 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+ + +TD+++++ EK+G ++ E +V L + P I CEVTL
Sbjct: 5 VTGRRITVTDSLRDYAIEKIGNSMKVLDDYSIEAEVILRIEKSHVV--PCI--CEVTLRP 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
K H V+R EE +YA+ID+ ++ + R+LRK K + DH ++RE +
Sbjct: 61 KGH-VIRVEERDTDMYAAIDIAAAKVVRQLRKYKTRVIDH----------RMRETLKGAE 109
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
T V D D EE D+ IVR+K E P+T EA+ Q++ + HDF+ + + ++
Sbjct: 110 GTPVEPTDFDKLMEE----LSDDEIVRVKEVEYSPMTEEEALIQIDLLGHDFFVYTDRDS 165
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++ +VY+R GGYG++ PK
Sbjct: 166 NDVQVVYRRSNGGYGMLKPK 185
>gi|284992660|ref|YP_003411214.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geodermatophilus obscurus DSM 43160]
gi|284065905|gb|ADB76843.1| sigma 54 modulation protein/ribosomal protein S30EA
[Geodermatophilus obscurus DSM 43160]
Length = 228
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 109/208 (52%), Gaps = 18/208 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPR----I 153
++++++G+N+E+ + + HVE+KVG++ L + +DV L K PR
Sbjct: 1 MEIVVRGRNVEVPEHYRQHVEDKVGQSDRFDGKLKILRIDVELF-----HEKNPRQSGKC 55
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRL 212
+R E+TL K VVRAE A YA++DL + + +LRK ++ HGR R+
Sbjct: 56 QRVEITLRGKG-PVVRAEAAAPDFYAALDLAAGKLDHRLRKAADRRRVHHGRRTPASVRV 114
Query: 213 KVREPVTQVVEN-DADVQSEE-----EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVD 266
P T V E+ D D + E + D + IVR K P+ V +A+ ++E V
Sbjct: 115 GGGAPDTDVTESFDRDRELAEGPHVTDLDEHLPGQIVREKHHPATPMHVDQALHEMELVG 174
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVI 294
HDF+ F +TG+ +VY+R A YG+I
Sbjct: 175 HDFFLFLCADTGQPTVVYRRHAYDYGLI 202
>gi|227529546|ref|ZP_03959595.1| ribosome-associated inhibitor protein Y [Lactobacillus vaginalis
ATCC 49540]
gi|227350631|gb|EEJ40922.1| ribosome-associated inhibitor protein Y [Lactobacillus vaginalis
ATCC 49540]
Length = 189
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 22/206 (10%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAV-LKHSHLVREVDVRLSVRGGEFG 148
+ G ++ +K I+G+N+E+TD+++++V +++ K ++ V L V
Sbjct: 2 LELKGEITMLKFNIRGENIEVTDSIRDYVVKRINKLQKFFEDNVEATAHVNLKVYPN--- 58
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 59 ---RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KG 113
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
F L + V D D +S++ D IVR K + P+ EA+ Q++ + HD
Sbjct: 114 FKSL-------EFVPTDDDAESQD------DLKIVRTKQISLKPMDPEEAVLQMDMLGHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVI 294
F+ F++ ET +IVY+RK G YG+I
Sbjct: 161 FFVFQDAETDGTSIVYRRKDGRYGLI 186
>gi|335045046|ref|ZP_08538069.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
108 str. F0425]
gi|363896221|ref|ZP_09322775.1| hypothetical protein HMPREF9624_00012 [Oribacterium sp. ACB7]
gi|333758832|gb|EGL36389.1| ribosomal subunit interface protein [Oribacterium sp. oral taxon
108 str. F0425]
gi|361961229|gb|EHL14447.1| hypothetical protein HMPREF9624_00012 [Oribacterium sp. ACB7]
Length = 175
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 106/207 (51%), Gaps = 43/207 (20%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I G+ + LT+ +KN VE+K+GK + K +V LS + +++ EV
Sbjct: 1 MKFSITGRTISLTEGLKNMVEKKLGK-LDKFFQADTPCNVTLSTQKD-------LQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E +Y SIDLV +++R++RK K+K RH
Sbjct: 53 TI-PVKGSVIRAEESTEDMYQSIDLVVDVLERQIRKYKDKLV--ARH------------- 96
Query: 219 TQVVENDADVQSEEEDDNFVDEV---------IVRMKFFEMPPLTVSEAIEQLENVDHDF 269
QS F++E IVR K ++ P+T EA Q+E + H+F
Sbjct: 97 ----------QSSSFTPEFLEEQESYDEEEIKIVRTKQIDLKPMTPEEACLQMELLGHNF 146
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIP 296
+ F N +TG++N+VYKRKA YG+I P
Sbjct: 147 FVFLNGDTGKVNVVYKRKAKSYGLIEP 173
>gi|160941609|ref|ZP_02088940.1| hypothetical protein CLOBOL_06509 [Clostridium bolteae ATCC
BAA-613]
gi|158435503|gb|EDP13270.1| hypothetical protein CLOBOL_06509 [Clostridium bolteae ATCC
BAA-613]
Length = 187
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 26/209 (12%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFG 148
+S + L ++ I G+N+E+T +K VE+K+GK L+H EV V LS +
Sbjct: 3 LSQEKELMFMRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-- 58
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
++ EVT+ K + +RAEE + +Y SIDLV II+R++R+ ++K D +
Sbjct: 59 -----QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEIIERQIRRYRKKLIDKKQAAIS 112
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
F++ + + D ++Q IV+ K F + P EA Q+E + H+
Sbjct: 113 FSQAFIE---EEDEVQDDEIQ------------IVKTKKFAIKPTIPEEACLQMEMLGHN 157
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY F N +T ++N+VYKRK G YG+I P+
Sbjct: 158 FYVFLNADTDQVNVVYKRKNGTYGLIEPE 186
>gi|315649819|ref|ZP_07902902.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
vortex V453]
gi|315274793|gb|EFU38174.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
vortex V453]
Length = 188
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 110/205 (53%), Gaps = 29/205 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--------VRLSVRGGEFGKG 150
++ I+G+ +++TD +K++V++K+ S L + D V LSV G
Sbjct: 1 MQFTIRGQQIDVTDALKDYVDKKL-------SRLDKYFDAPPTSEGYVTLSVIRG----- 48
Query: 151 PRIRRCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+ EVT+ GVV RAE+ ++ +YASID V ++R++RK K K + + G
Sbjct: 49 --LHTVEVTI--PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIKQEGGL 104
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
L + DA+ Q E ++DN+ +VR K F M P+ V EAI Q+ V H+F
Sbjct: 105 KTLIAENGAAATSQMDAE-QVEYDEDNYE---VVRTKRFTMKPMDVEEAILQMNMVGHNF 160
Query: 270 YGFRNEETGEINIVYKRKAGGYGVI 294
+ F N +T E+N+VYKR G YG+I
Sbjct: 161 FVFSNIDTQEVNVVYKRDDGKYGLI 185
>gi|421077421|ref|ZP_15538392.1| ribosomal subunit interface protein [Pelosinus fermentans JBW45]
gi|392524809|gb|EIW47964.1| ribosomal subunit interface protein [Pelosinus fermentans JBW45]
Length = 176
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 27/200 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+E+T +K +V ++ K + K+ + E+ L+V G R + L
Sbjct: 3 IIVRGKNIEITPALKEYVVKRASK-ITKYFDTLGEITAILAVEKG---------RHIIEL 52
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+G ++R EE +Y SIDLV I++++ K K K S R+KV
Sbjct: 53 TVPVNGMILRGEEATADMYTSIDLVVDKIEKQIEKYKTKIS---------RRMKVGAFKG 103
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
++V A + EE +V+ K F + P+ + EAI Q+ V+HDFY F N ET E
Sbjct: 104 ELVAATAAPEVEELH-------VVKTKRFAVKPMDIEEAILQMNLVNHDFYVFSNSETEE 156
Query: 280 INIVYKRKAGGYGVIIPKGN 299
+N+VY+RK G YG+I P N
Sbjct: 157 VNVVYRRKDGRYGLIEPDFN 176
>gi|325264725|ref|ZP_08131454.1| ribosomal subunit interface protein [Clostridium sp. D5]
gi|324030017|gb|EGB91303.1| ribosomal subunit interface protein [Clostridium sp. D5]
Length = 185
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 26/204 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II GKN+++T +K+ +E K+GK + ++ E+ V LSV ++ EV
Sbjct: 1 MKFIISGKNIDVTPGLKDTIEHKLGK-LERYFTPETEIIVTLSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK----ESDHGRHMKGFNRLKV 214
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K H G + K
Sbjct: 53 TIPVKGN-IIRSEQTSNDMYVSIDLVEEVIERQLRKYKNKLVAKSQGHPTSSAGGSNFK- 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ E++ ++ DE+ IVR K F + P+ +A Q++ V H F+ F
Sbjct: 111 ----KEFFESEDSTPTD-------DEIRIVRTKRFGIKPMYPEDACIQMDLVGHSFFVFC 159
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N ET E+N+VYKRK G +G+I P+
Sbjct: 160 NAETDEVNVVYKRKDGSFGLIEPE 183
>gi|448239366|ref|YP_007403424.1| general stress protein [Geobacillus sp. GHH01]
gi|445208208|gb|AGE23673.1| general stress protein [Geobacillus sp. GHH01]
Length = 183
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 114/194 (58%), Gaps = 20/194 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ +VE+K+GK + ++ +V+V ++++ G+G + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKIGK-LERYFDRTDDVNVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + +L+ RE ++V
Sbjct: 59 IPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVN---------RKLRDREKEAKLV 109
Query: 223 ENDADVQS--EEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
A V S ++N + IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 110 ---APVPSGASAAENNEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRT 166
Query: 281 NIVYKRKAGGYGVI 294
NIVY+RK G YG+I
Sbjct: 167 NIVYRRKDGKYGLI 180
>gi|312135787|ref|YP_004003125.1| ribosomal subunit interface protein [Caldicellulosiruptor
owensensis OL]
gi|311775838|gb|ADQ05325.1| ribosomal subunit interface protein [Caldicellulosiruptor
owensensis OL]
Length = 180
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 22/197 (11%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKN+E+TD +K+ +E+K+ K + ++ L +V V LSV K I EVT+
Sbjct: 3 FIISGKNIEVTDALKDRIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEVTI 54
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
HG ++RAEE + +Y++IDLV ++R++RK K K + + ++ R P
Sbjct: 55 --PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKKEKDVESL-RYMTYAPEE 111
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
E++ + + VI + K F + P++V EAI Q+ + H+F+ F N++T +
Sbjct: 112 PEEESEENGEF----------VIAKTKKFPIKPMSVEEAILQMNLLGHNFFVFLNQDTDK 161
Query: 280 INIVYKRKAGGYGVIIP 296
+N+VYKR G YG+I P
Sbjct: 162 VNVVYKRNDGAYGLIEP 178
>gi|410594009|ref|YP_006950736.1| Ribosomal subunit interface protein [Streptococcus agalactiae
SA20-06]
gi|410517648|gb|AFV71792.1| Ribosomal subunit interface protein [Streptococcus agalactiae
SA20-06]
Length = 184
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 113/201 (56%), Gaps = 18/201 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++ +VE K+ K V K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEEQELDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILID-SITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE---------KIPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+QV + + + +EE V + IVR K + P+ V EA+ Q+E + HDF+ + + E
Sbjct: 107 SQVFTTEFEAEPDEE---VVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDN 163
Query: 279 EINIVYKRKAGGYGVIIPKGN 299
N++YKR+ G G+I KGN
Sbjct: 164 TTNVLYKREDGELGLIEAKGN 184
>gi|443630928|ref|ZP_21115109.1| hypothetical protein BSI_01800 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443348733|gb|ELS62789.1| hypothetical protein BSI_01800 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 189
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 29/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK H NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ +++D D VQ E E+D +D IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 YLLANGLDSDTDIAVQDEIEEDESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 165 NAETNLTNVVYRRNDGKYGLIEP 187
>gi|406837852|ref|ZP_11097446.1| Ribosome-associated factor Y [Lactobacillus vini DSM 20605]
Length = 184
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+T ++ ++++K+ K + K+ V L V + K
Sbjct: 2 LKYSIRGENIEVTAAIRTYIQKKL-KKLEKYFEDTSSSTAHVNLKVYSDKTAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KGF L+
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKINRKSRE-KGFKGLET-- 110
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+A Q+EE+ D D IVR K F + P+ EAI Q++ + HDF+ + + E
Sbjct: 111 -------ANAPAQNEEKADKKFD--IVRTKRFSLKPMDSEEAILQMDMLGHDFFIYEDAE 161
Query: 277 TGEINIVYKRKAGGYGVI 294
T INIVY+R G YG+I
Sbjct: 162 TNGINIVYRRNDGRYGLI 179
>gi|414161418|ref|ZP_11417678.1| ribosomal subunit interface protein [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876314|gb|EKS24225.1| ribosomal subunit interface protein [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 187
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 112/197 (56%), Gaps = 17/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+KVGK + ++ V VD + V+ + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGK-LERYFTNVPNVDAHVKVKTYANSST----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R + +EP
Sbjct: 57 TI-PLKDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKR------KENEKEPF 109
Query: 219 TQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ A ++ ++D+N DE+ I+R K F + P+ EA+ Q++ + HDF+ F + +T
Sbjct: 110 PSIPA--ATPETADQDNN--DEIEIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFTDRDT 165
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 166 DGTSIVYRRKDGKYGLI 182
>gi|297531364|ref|YP_003672639.1| ribosomal subunit interface protein [Geobacillus sp. C56-T3]
gi|297254616|gb|ADI28062.1| ribosomal subunit interface protein [Geobacillus sp. C56-T3]
Length = 183
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 112/192 (58%), Gaps = 16/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ +VE+K+GK + ++ +V+V ++++ G+G + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKIGK-LERYFDRTDDVNVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + R + K+ PV+
Sbjct: 59 IPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVNRKLRDRE--KEAKLAAPVS--- 113
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ + ++N + IVR K F + P+ EAI Q+ + H+F+ F N ET NI
Sbjct: 114 -----IGASAAENNEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRTNI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|392374253|ref|YP_003206086.1| protein DR_1082 [Candidatus Methylomirabilis oxyfera]
gi|258591946|emb|CBE68251.1| Protein DR_1082 [Candidatus Methylomirabilis oxyfera]
Length = 180
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 22/201 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I +NLE+T+ ++++ EEK+ + + K + + V LSV K +I EV
Sbjct: 1 MQITITTRNLEITEPLRHYAEEKITR-LQKFVNQITSAHVVLSVE-----KHRQI--AEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMKGFNRLKVREP 217
TL ++H +R EE + +Y++IDLV+ I+R++ + KEK +H GR G R E
Sbjct: 53 TLHVREH-TIRGEESSTDLYSAIDLVADKIERQILRYKEKIVEHSGR---GSGRSLSPEE 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ A+ + ED IV+ K F M PL+ EA Q+ + H+F+ FRN T
Sbjct: 109 I-----GPAESEPFSEDG----PRIVKTKQFAMKPLSPDEAAMQMSLLGHNFFVFRNART 159
Query: 278 GEINIVYKRKAGGYGVIIPKG 298
E+N++Y+R+ G YG+I P G
Sbjct: 160 QEVNVLYRRRDGDYGLIEPVG 180
>gi|77408122|ref|ZP_00784869.1| ribosomal subunit interface protein [Streptococcus agalactiae COH1]
gi|77413335|ref|ZP_00789530.1| ribosomal subunit interface protein [Streptococcus agalactiae 515]
gi|339302218|ref|ZP_08651281.1| ribosomal subunit interface protein [Streptococcus agalactiae ATCC
13813]
gi|417004464|ref|ZP_11943197.1| ribosomal subunit interface protein [Streptococcus agalactiae FSL
S3-026]
gi|421147022|ref|ZP_15606716.1| ribosomal subunit interface protein [Streptococcus agalactiae
GB00112]
gi|421532662|ref|ZP_15979015.1| ribosomal subunit interface protein [Streptococcus agalactiae
STIR-CD-17]
gi|77160649|gb|EAO71765.1| ribosomal subunit interface protein [Streptococcus agalactiae 515]
gi|77173306|gb|EAO76428.1| ribosomal subunit interface protein [Streptococcus agalactiae COH1]
gi|319744322|gb|EFV96685.1| ribosomal subunit interface protein [Streptococcus agalactiae ATCC
13813]
gi|341578263|gb|EGS28660.1| ribosomal subunit interface protein [Streptococcus agalactiae FSL
S3-026]
gi|401686227|gb|EJS82213.1| ribosomal subunit interface protein [Streptococcus agalactiae
GB00112]
gi|403642070|gb|EJZ02945.1| ribosomal subunit interface protein [Streptococcus agalactiae
STIR-CD-17]
Length = 184
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 113/201 (56%), Gaps = 18/201 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++ +VE K+ K V K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEAIREYVETKLSK-VEKYFNEEQELDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILID-SITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKYRE---------KIPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+QV + + + +EE V + IVR K + P+ V EA+ Q+E + HDF+ + + E
Sbjct: 107 SQVFTTEFEAEPDEE---AVSQRIVRTKNVNLKPMDVEEALLQMELLGHDFFIYTDAEDN 163
Query: 279 EINIVYKRKAGGYGVIIPKGN 299
N++YKR+ G G+I KGN
Sbjct: 164 TTNVLYKREDGELGLIEAKGN 184
>gi|297583377|ref|YP_003699157.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
selenitireducens MLS10]
gi|297141834|gb|ADH98591.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
selenitireducens MLS10]
Length = 183
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 118/200 (59%), Gaps = 25/200 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLV--REVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+NLE+T ++++VE+KVGK + K+ +V V++SV + ++ E+T+
Sbjct: 5 IRGENLEITPALRDYVEKKVGK-LEKYFETTPSSDVHVKMSVVNTD-------QKVEITI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++RAEE +YA++DLV ++R++RK K K + R +G + LK
Sbjct: 57 PMPKL-LLRAEEKHADMYAAVDLVIEKLERQIRKHKTKVN---RKFRGEDSLKY------ 106
Query: 221 VVENDADVQSEEE--DDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +N+ + SEEE DD++ IVR K F++ P+ EAI Q++ + H+F+ F + +G
Sbjct: 107 MFKNELEPISEEETPDDDYE---IVRTKRFDLKPMDAEEAILQMDMLGHNFFVFSDAVSG 163
Query: 279 EINIVYKRKAGGYGVIIPKG 298
++VY+R G YG+I P+
Sbjct: 164 VTSVVYRRSDGKYGLIEPEA 183
>gi|18311154|ref|NP_563088.1| 30S ribosomal protein S30 [Clostridium perfringens str. 13]
gi|18145837|dbj|BAB81878.1| 30S ribosomal protein S30AE family [Clostridium perfringens str.
13]
Length = 179
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I V
Sbjct: 1 MKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI----V 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G++ R EE + +Y SIDLV I+R++RK K + S R+ R +P
Sbjct: 51 EIMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHIDP 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D++ E+E IV+ K F++ P+ EA+ Q+E + HDF+ F++ ET
Sbjct: 109 I-------EDMKEEKEAK------IVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPET 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG+I P
Sbjct: 156 NQLNVVYKRKDGNYGLIEP 174
>gi|242242122|ref|ZP_04796567.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
W23144]
gi|416124889|ref|ZP_11595684.1| ribosomal subunit interface protein [Staphylococcus epidermidis
FRI909]
gi|418614088|ref|ZP_13177075.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU118]
gi|418633753|ref|ZP_13196159.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU129]
gi|420175420|ref|ZP_14681858.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM061]
gi|420176687|ref|ZP_14683094.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM057]
gi|420189999|ref|ZP_14695947.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM037]
gi|420193116|ref|ZP_14698971.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM023]
gi|420199742|ref|ZP_14705413.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM031]
gi|420203756|ref|ZP_14709317.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM015]
gi|242234435|gb|EES36747.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
W23144]
gi|319401171|gb|EFV89386.1| ribosomal subunit interface protein [Staphylococcus epidermidis
FRI909]
gi|374821661|gb|EHR85713.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU118]
gi|374838700|gb|EHS02238.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU129]
gi|394243355|gb|EJD88721.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM061]
gi|394252253|gb|EJD97291.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM057]
gi|394259292|gb|EJE04150.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM037]
gi|394260239|gb|EJE05054.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM023]
gi|394271492|gb|EJE15985.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM031]
gi|394274338|gb|EJE18759.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM015]
Length = 189
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N AD ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTANNQADDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>gi|418329742|ref|ZP_12940795.1| ribosomal subunit interface protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|418632602|ref|ZP_13195032.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU128]
gi|365229865|gb|EHM70993.1| ribosomal subunit interface protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|374832172|gb|EHR95892.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU128]
Length = 189
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N AD ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNQADDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>gi|23099953|ref|NP_693419.1| hypothetical protein OB2498 [Oceanobacillus iheyensis HTE831]
gi|22778184|dbj|BAC14454.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 185
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 111/203 (54%), Gaps = 25/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T +K +VE+K+ K S +V V LSV E +R E
Sbjct: 1 MKFNIRGENIEVTGAIKEYVEKKISKLERYFDSAPNTDVHVNLSVYNDE-------QRIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK 213
VT+ + ++R E +YA++DLV ++R++RK I K +G F +
Sbjct: 54 VTI-PMTNLLLRGEVQHIDLYAAVDLVVDKLERQIRKHKTKINRKFRQNGSPKHAFAEM- 111
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
E +A + +EED+N ++ IVR K F + P+ EAI Q++ + H+F+ F
Sbjct: 112 ---------EKEARLAEDEEDENQLE--IVRTKRFNLKPMDSEEAILQMDMLGHEFFVFT 160
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N+++GE N+VY+R+ G YG+I P
Sbjct: 161 NDDSGETNVVYRRRDGKYGLIEP 183
>gi|118586404|ref|ZP_01543852.1| ribosomal subunit interface protein [Oenococcus oeni ATCC BAA-1163]
gi|421186048|ref|ZP_15643444.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB418]
gi|118433166|gb|EAV39884.1| ribosomal subunit interface protein [Oenococcus oeni ATCC BAA-1163]
gi|399968244|gb|EJO02698.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB418]
Length = 190
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ TD + N+++ EK+ + + ++ + ++VR + + EVT
Sbjct: 6 IRGENMSTTDAINNYIKLRLEKLNNYIDQKNNPIAHINVR--------KYNEKTFKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE Y ++DLVS+ + R++RK K + + R +GF + E +
Sbjct: 58 I-PLPYLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKGIDFNEAID 115
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
V S+ +D +D ++R K + P+ + EA+ Q+E +DHDF+ F N +T +
Sbjct: 116 PV-------PSDTNEDKKID--VIRRKTLSLKPMDIEEAVLQMEMLDHDFFLFLNSDTNQ 166
Query: 280 INIVYKRKAGGYGVI 294
++IVYKR G YG+I
Sbjct: 167 LDIVYKRDDGKYGLI 181
>gi|227824557|ref|ZP_03989389.1| sigma-54 modulation protein [Acidaminococcus sp. D21]
gi|226905056|gb|EEH90974.1| sigma-54 modulation protein [Acidaminococcus sp. D21]
Length = 180
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 27/198 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE--VTL 160
++GKNLE+T +K++VE+KV + + K V GE RI R + V +
Sbjct: 5 VRGKNLEVTPALKDYVEKKV-ETITKQFKTV-----------GEITAVMRIERNKHIVEI 52
Query: 161 FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
G+V RA+E +E +YASID I+R++ K K + R F V PV+
Sbjct: 53 TVPASGIVLRAQEGSENMYASIDNCVEKIERQIHKYKTRLMK--RKYNNFRDAAV-PPVS 109
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
DV+ D F + R K + M P+ V EAI Q+ ++HDF+ F N+ET
Sbjct: 110 ------GDVEEASADGEFK---VARTKTYAMRPMNVQEAIMQMNMLNHDFFVFFNDETES 160
Query: 280 INIVYKRKAGGYGVIIPK 297
+ +VY+RKAG YG+I P+
Sbjct: 161 MAVVYRRKAGDYGLINPE 178
>gi|56421644|ref|YP_148962.1| ribosomal protein S30EA [Geobacillus kaustophilus HTA426]
gi|56381486|dbj|BAD77394.1| ribosomal protein S30EA [Geobacillus kaustophilus HTA426]
Length = 183
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 112/194 (57%), Gaps = 20/194 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE+K+GK + ++ +V V ++++ G+G + EVT+
Sbjct: 5 VRGENLEVTPALREYVEKKIGK-LERYFDGTEDVHVHVNLKVYNDGQG----KIEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
H ++RAEE E +YA+IDLV+ ++R++RK K K + +L+ RE ++
Sbjct: 59 MPHLLLRAEERHEDMYAAIDLVTDKLERQIRKHKTKVN---------RKLRDREKEAKLA 109
Query: 223 ENDADVQS--EEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
A V S ++N + IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 110 ---APVPSGASAAENNEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRT 166
Query: 281 NIVYKRKAGGYGVI 294
NIVY+RK G YG+I
Sbjct: 167 NIVYRRKDGKYGLI 180
>gi|375089179|ref|ZP_09735511.1| ribosomal subunit interface protein [Dolosigranulum pigrum ATCC
51524]
gi|374560493|gb|EHR31858.1| ribosomal subunit interface protein [Dolosigranulum pigrum ATCC
51524]
Length = 193
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 110/198 (55%), Gaps = 18/198 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+TD ++ +VE KVGK V K+ V E + ++++ + + EVT+
Sbjct: 6 VRGENIEVTDAIREYVEAKVGK-VEKYFTDVPEANAHVNLKT----YSDKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV---- 218
+ V+RAEE + +Y S+DLVS ++R++RK K K + R ++ EPV
Sbjct: 60 LPNVVLRAEETSPDMYGSVDLVSDKLERQIRKYKTKVNRRQRRQT----VEAPEPVDPDL 115
Query: 219 --TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
T V D + + E D V+ IVR K ++ P+ EA+ Q++ + HDF+ F + E
Sbjct: 116 LDTHVEGLDGEETEQLESDAGVE--IVRTKQLDLKPMHAEEAVLQMDMLGHDFFIFEDAE 173
Query: 277 TGEINIVYKRKAGGYGVI 294
T NIVYKR G YG++
Sbjct: 174 TESTNIVYKRHDGKYGLL 191
>gi|47567401|ref|ZP_00238114.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47568471|ref|ZP_00239171.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47569295|ref|ZP_00239980.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|217962670|ref|YP_002341244.1| ribosomal subunit Interface protein [Bacillus cereus AH187]
gi|222098642|ref|YP_002532700.1| ribosomal subunit interface protein [Bacillus cereus Q1]
gi|228988412|ref|ZP_04148503.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229141916|ref|ZP_04270442.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26]
gi|229158753|ref|ZP_04286811.1| Ribosome-associated factor Y [Bacillus cereus ATCC 4342]
gi|375287199|ref|YP_005107638.1| ribosomal subunit interface protein [Bacillus cereus NC7401]
gi|423375269|ref|ZP_17352606.1| ribosomal subunit interface protein [Bacillus cereus AND1407]
gi|423572127|ref|ZP_17548340.1| ribosomal subunit interface protein [Bacillus cereus MSX-A12]
gi|47554066|gb|EAL12432.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47554862|gb|EAL13213.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|47556022|gb|EAL14360.1| ribosomal subunit interface protein [Bacillus cereus G9241]
gi|217063773|gb|ACJ78023.1| ribosomal subunit interface protein [Bacillus cereus AH187]
gi|221242701|gb|ACM15411.1| ribosomal subunit interface protein [Bacillus cereus Q1]
gi|228624737|gb|EEK81506.1| Ribosome-associated factor Y [Bacillus cereus ATCC 4342]
gi|228641531|gb|EEK97836.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26]
gi|228771268|gb|EEM19743.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|358355726|dbj|BAL20898.1| ribosomal subunit interface protein [Bacillus cereus NC7401]
gi|401092688|gb|EJQ00813.1| ribosomal subunit interface protein [Bacillus cereus AND1407]
gi|401198683|gb|EJR05598.1| ribosomal subunit interface protein [Bacillus cereus MSX-A12]
Length = 180
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 110/201 (54%), Gaps = 29/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRK----------HKTKVNR-KLREK 99
Query: 218 VTQ----VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ ++ V E E+D +VR K F++ P+ V EAI Q++ + H+F+ F
Sbjct: 100 GSMKTNFILPEAVAVLDEVEEDQLE---LVRTKRFDLKPMDVEEAILQMDMLGHNFFVFT 156
Query: 274 NEETGEINIVYKRKAGGYGVI 294
N +T E N+VY RK G YG+I
Sbjct: 157 NADTNETNVVYGRKDGKYGLI 177
>gi|225376502|ref|ZP_03753723.1| hypothetical protein ROSEINA2194_02144 [Roseburia inulinivorans DSM
16841]
gi|225211674|gb|EEG94028.1| hypothetical protein ROSEINA2194_02144 [Roseburia inulinivorans DSM
16841]
Length = 176
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N+ELT+ +K VE+K+ K + K+ EV+V LSV ++ EV
Sbjct: 1 MRIKITGRNIELTEGLKAAVEDKLNK-LEKYFTPDTEVNVTLSVEKER-------QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +R+E+ + +Y SIDLV +I+R+L+K + K L ++
Sbjct: 53 TI-PMKGSYIRSEQVSSDMYVSIDLVEEVIERQLKKYRTK-------------LVTKQQN 98
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V + + EDD + I+R K F+M P+ +A ++E + HDFY F N ET
Sbjct: 99 AAAVFKQDFLDEKSEDDEEIK--IIRTKKFDMKPMYPEDACVEMELLGHDFYVFINAETE 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK YG+I P+
Sbjct: 157 DVNVVYKRKGNTYGLIEPE 175
>gi|89897617|ref|YP_521104.1| hypothetical protein DSY4871 [Desulfitobacterium hafniense Y51]
gi|219670744|ref|YP_002461179.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfitobacterium hafniense DCB-2]
gi|423076126|ref|ZP_17064840.1| ribosomal subunit interface protein [Desulfitobacterium hafniense
DP7]
gi|89337065|dbj|BAE86660.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541004|gb|ACL22743.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfitobacterium hafniense DCB-2]
gi|361852943|gb|EHL05141.1| ribosomal subunit interface protein [Desulfitobacterium hafniense
DP7]
Length = 175
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 108/195 (55%), Gaps = 25/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GK +E+TD +K +V ++VGK + K+S +V V L V G R EVT
Sbjct: 5 VRGKQMEVTDALKEYVLKRVGK-LEKYSDEFMDVKVTLLVEEGR-------HRVEVTAPL 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE++ +YASIDLV ++R++ K + R+ R +
Sbjct: 57 QGM-ILRGEEESGDMYASIDLVVEKLERQIDKYR-------------TRINKRMRTKVLK 102
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+++ + + EDD+ E +VR K F P++V EAI Q+ V H+FY F N +T IN+
Sbjct: 103 DHEIEHPALYEDDS---EEVVRHKKFGTKPMSVEEAIMQMNLVGHNFYAFTNMDTNVINV 159
Query: 283 VYKRKAGGYGVIIPK 297
VY+R++G YG++ P+
Sbjct: 160 VYRRRSGDYGLLEPE 174
>gi|332983237|ref|YP_004464678.1| 30S ribosomal protein S30P;sigma 54 modulation protein [Mahella
australiensis 50-1 BON]
gi|332700915|gb|AEE97856.1| SSU ribosomal protein S30P;sigma 54 modulation protein [Mahella
australiensis 50-1 BON]
Length = 179
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 110/198 (55%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++II GKN+ +TD ++ V++K+GK ++ EV V +SV K I +
Sbjct: 1 MRIIISGKNIPITDALRAIVDKKLGK-FDRYFDEDTEVRVVMSVE-----KNRHIVEITI 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
L ++RAE+ ++ +Y SI+ V ++R++ K K K +++E
Sbjct: 55 PL---NGSILRAEDYSDDMYTSIERVLQKLERQIHKHKTKLEK-----------RIKEGA 100
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ E D+++E E+ D +VR K F + P+++ EAI Q+E + HDF+ F N ET
Sbjct: 101 FKSDELLFDIETESEESEQHD--VVRTKRFALKPMSIEEAITQMELLGHDFFVFNNAETE 158
Query: 279 EINIVYKRKAGGYGVIIP 296
EIN+VY+R+ GGYG+I P
Sbjct: 159 EINVVYRRRDGGYGLIEP 176
>gi|227891185|ref|ZP_04008990.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
ATCC 11741]
gi|301301274|ref|ZP_07207429.1| ribosomal subunit interface protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|385840725|ref|YP_005864049.1| Ribosome-associated factor Y [Lactobacillus salivarius CECT 5713]
gi|417788602|ref|ZP_12436285.1| ribosomal subunit interface protein [Lactobacillus salivarius
NIAS840]
gi|417809958|ref|ZP_12456639.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
GJ-24]
gi|227867059|gb|EEJ74480.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
ATCC 11741]
gi|300214846|gb|ADJ79262.1| Ribosome-associated factor Y [Lactobacillus salivarius CECT 5713]
gi|300851150|gb|EFK78879.1| ribosomal subunit interface protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|334308779|gb|EGL99765.1| ribosomal subunit interface protein [Lactobacillus salivarius
NIAS840]
gi|335350882|gb|EGM52378.1| ribosome-associated inhibitor protein Y [Lactobacillus salivarius
GJ-24]
Length = 184
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+++ K + V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTADSTAHVNLKVYSDKTAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + P
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKNFEF-AP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V AD + E ED F IVR K + P+ EA+ Q++ + HDF+ + + E
Sbjct: 113 V-------ADEKEEVEDKKFE---IVRTKRLSLKPMDSEEAVLQMDMLGHDFFIYEDAEN 162
Query: 278 GEINIVYKRKAGGYGVI 294
G INIVY+R+ G YG+I
Sbjct: 163 GGINIVYRRRDGRYGLI 179
>gi|116491347|ref|YP_810891.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni PSU-1]
gi|419758551|ref|ZP_14284867.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB304]
gi|419856302|ref|ZP_14379024.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB202]
gi|419858461|ref|ZP_14381133.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184513|ref|ZP_15641935.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB318]
gi|421188116|ref|ZP_15645456.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB419]
gi|421189926|ref|ZP_15647233.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB422]
gi|421191640|ref|ZP_15648912.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB548]
gi|421192504|ref|ZP_15649759.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB553]
gi|116092072|gb|ABJ57226.1| SSU ribosomal protein S30P [Oenococcus oeni PSU-1]
gi|399904738|gb|EJN92190.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB304]
gi|399966157|gb|EJO00707.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB419]
gi|399967040|gb|EJO01531.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB318]
gi|399971344|gb|EJO05594.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB548]
gi|399971360|gb|EJO05609.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB422]
gi|399974574|gb|EJO08720.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB553]
gi|410498579|gb|EKP90028.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410499788|gb|EKP91216.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB202]
Length = 190
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ TD + N+++ EK+ + + ++ + ++VR + + EVT
Sbjct: 6 IRGENMSTTDAINNYIKLRLEKLNNYIDQKNNPIAHINVR--------KYNEKTFKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE Y ++DLVS+ + R++RK K + + R +GF + E +
Sbjct: 58 I-PLPYLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKGIDFNEAID 115
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
V S+ +D +D ++R K + P+ + EA+ Q+E +DHDF+ F N +T +
Sbjct: 116 PV-------PSDTNEDKKID--VIRRKNLSLKPMDIEEAVLQMEMLDHDFFLFLNSDTNQ 166
Query: 280 INIVYKRKAGGYGVI 294
++IVYKR G YG+I
Sbjct: 167 LDIVYKRDDGKYGLI 181
>gi|240144450|ref|ZP_04743051.1| ribosomal subunit interface protein [Roseburia intestinalis L1-82]
gi|257203560|gb|EEV01845.1| ribosomal subunit interface protein [Roseburia intestinalis L1-82]
gi|291535662|emb|CBL08774.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Roseburia
intestinalis M50/1]
gi|291540929|emb|CBL14040.1| SSU ribosomal protein S30P/sigma 54 modulation protein [Roseburia
intestinalis XB6B4]
gi|356668609|gb|AET35505.1| ribosomal subunit interface protein [uncultured bacterium]
Length = 176
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 110/199 (55%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N+ELTD +K+ VE+K+ K + K+ +V V LSV ++ EV
Sbjct: 1 MRIKITGRNIELTDGIKDAVEDKLNK-LEKYFTPDTDVYVTLSVEKER-------QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +R+E+ + +Y SIDLV +I+R+L+K + K + ++
Sbjct: 53 TI-PMKGNYIRSEQVSNDMYVSIDLVEEVIERQLKKYRTK------------LVTKQQSA 99
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V + D + + +DD + I+R K F+M P+ +A Q+E + HDF+ F N ET
Sbjct: 100 ASVFKQDF-LDAASDDDEEIK--IIRSKKFDMKPMYPEDACVQMELLGHDFFVFINAETE 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK YG+I P+
Sbjct: 157 DVNVVYKRKGNTYGLIEPE 175
>gi|319891754|ref|YP_004148629.1| ribosomal subunit interface protein [Staphylococcus
pseudintermedius HKU10-03]
gi|386319906|ref|YP_006016069.1| ribosomal subunit interface protein [Staphylococcus
pseudintermedius ED99]
gi|317161450|gb|ADV04993.1| Ribosomal subunit interface protein [Staphylococcus
pseudintermedius HKU10-03]
gi|323465077|gb|ADX77230.1| ribosomal subunit interface protein [Staphylococcus
pseudintermedius ED99]
Length = 186
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 22/196 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G NL +TD ++N++EEK+GK + ++ V + V+ + + EVT+
Sbjct: 6 IHGDNLTITDAIRNYIEEKIGK-LERYFTNVPNATAHVKVKTYQNSST----KIEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKVREPV 218
K+ +RAEE + +YA IDL+++ ++R++RK K K D G F ++ EP
Sbjct: 60 LKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTRVNRKNRDRGYEEDVFTEVEATEPE 119
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +D++ I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 120 VEQEATASDIE------------IIRSKTFSLKPMDSEEAVLQMNLLGHDFFVFNDRETD 167
Query: 279 EINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 168 GTSIVYRRKDGKYGLI 183
>gi|417892400|ref|ZP_12536450.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21201]
gi|341857862|gb|EGS98672.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21201]
Length = 193
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 108/201 (53%), Gaps = 19/201 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK- 213
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
++E V+NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F
Sbjct: 116 MQETQETQVDNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFT 167
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ ET +IVY+RK G YG+I
Sbjct: 168 DRETDGTSIVYRRKDGKYGLI 188
>gi|347750937|ref|YP_004858502.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
coagulans 36D1]
gi|347583455|gb|AEO99721.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
coagulans 36D1]
Length = 186
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 106/193 (54%), Gaps = 15/193 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP-RIRRCEVTLF 161
I+G+N+E+T +++++E+KV K + V D ++V+ P + + E+T+
Sbjct: 5 IRGENIEVTPAIRDYIEKKVNKL---DRYFVETPDTSVNVK---LKVNPDKTSKVEITI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE E +YA+IDL++ ++R++RK K K + R KG R P T +
Sbjct: 58 PMPQVVLRAEETNEDMYAAIDLIADKLERQIRKHKTKVNRKLRE-KGSTRELFTTPDTGL 116
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E A +EED IVR K F + P+ EA+ Q+ + H+F+ + + ET N
Sbjct: 117 KEKQA---RKEEDSELQ---IVRTKHFNLKPMDSEEAVLQMNLLGHNFFIYTDAETNHTN 170
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 171 IVYRRKDGKYGLI 183
>gi|222150751|ref|YP_002559904.1| ribosomal subunit interface protein [Macrococcus caseolyticus
JCSC5402]
gi|222119873|dbj|BAH17208.1| ribosomal subunit interface protein homolog [Macrococcus
caseolyticus JCSC5402]
Length = 186
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 27/197 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G N+ +TD ++N++EEK+ K + ++ V E + + ++ + GK + EVT+
Sbjct: 6 IHGDNITVTDAIRNYIEEKLSK-LERYFTNVPEANAHVKIKTYQDGKS----KVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K +RAEE +YA+++L+ ++R++RK H NR K RE + V
Sbjct: 60 LKDVTLRAEERHNDLYAAVNLIVEKLERQIRK----------HKTKVNR-KFRE---KGV 105
Query: 223 ENDA-----DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ND + EEE + ++ I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 106 KNDIFPVLPGTEPEEEKGDEIE--IIRSKQFALKPMDAEEAVLQMNMLGHDFFIFNDRET 163
Query: 278 GEINIVYKRKAGGYGVI 294
E NIVYKRK G YG+I
Sbjct: 164 NETNIVYKRKDGKYGLI 180
>gi|418961687|ref|ZP_13513572.1| ribosome-associated factor Y [Lactobacillus salivarius SMXD51]
gi|380343782|gb|EIA32130.1| ribosome-associated factor Y [Lactobacillus salivarius SMXD51]
Length = 184
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+++ K + V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTADSTAHVNLKVYSDKTAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + P
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKNFEF-AP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V AD + E ED F IVR K + P+ EA+ Q++ + HDF+ + + E
Sbjct: 113 V-------ADEKEEVEDKKFE---IVRTKRLSLKPMDSEEAVLQMDMLGHDFFIYEDAEN 162
Query: 278 GEINIVYKRKAGGYGVI 294
G INIVY+R+ G YG+I
Sbjct: 163 GGINIVYRRRDGRYGLI 179
>gi|312621632|ref|YP_004023245.1| sigma 54 modulation protein/ribosomal protein s30ea
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202099|gb|ADQ45426.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor kronotskyensis 2002]
Length = 181
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 108/199 (54%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K VE+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERVEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + + + +
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAKDAESLRYMTFELE 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + + + + I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 111 EPEKEVQEENSEFK----------IAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDT 160
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKR G YG+I P
Sbjct: 161 DKVNVVYKRNDGAYGLIEP 179
>gi|110803848|ref|YP_699447.1| ribosomal protein S30AE familyprotein [Clostridium perfringens
SM101]
gi|110684349|gb|ABG87719.1| ribosomal subunit interface protein [Clostridium perfringens SM101]
Length = 179
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I V
Sbjct: 1 MKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI----V 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G++ R EE + +Y SIDLV I+R++RK K + S R+ R +P
Sbjct: 51 EVMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHIDP 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D++ E+E IV+ K F++ P+ EA+ Q+E + HDF+ F++ ET
Sbjct: 109 I-------EDMKEEKEAK------IVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPET 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG+I P
Sbjct: 156 NQLNVVYKRKDGNYGLIEP 174
>gi|163846965|ref|YP_001635009.1| ribosomal subunit interface protein [Chloroflexus aurantiacus
J-10-fl]
gi|222524786|ref|YP_002569257.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Chloroflexus sp. Y-400-fl]
gi|163668254|gb|ABY34620.1| ribosomal subunit interface protein [Chloroflexus aurantiacus
J-10-fl]
gi|222448665|gb|ACM52931.1| sigma 54 modulation protein/ribosomal protein S30EA [Chloroflexus
sp. Y-400-fl]
Length = 197
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 116/201 (57%), Gaps = 8/201 (3%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I+ +N +++D + H+EEK+ K + ++ H + + V V+ + + R +
Sbjct: 1 MELTIKSRNGKISDRQRAHIEEKLSK-LERYLHGITSITV--EVQHEQQRNAGEVYRVQT 57
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVRE 216
TL + HGV+ RAEE A +YA+ID V ++QR++ + K+K R + N L E
Sbjct: 58 TLVAE-HGVILRAEERAPDLYAAIDEVQEVLQRQIARYKDKYWRRSREQRRAPNGLTPAE 116
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V A + + E + + ++R K F + P+ V +AIEQ+E + H+F+ F++ E
Sbjct: 117 EVAIAEAEAAALATPTEVGS--EARVIRTKTFRLRPMFVDDAIEQMELLGHNFFVFQDAE 174
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T +++++Y+R+ G YGVIIP+
Sbjct: 175 TMQVSVLYRRRDGNYGVIIPE 195
>gi|27467452|ref|NP_764089.1| hypothetical protein SE0534 [Staphylococcus epidermidis ATCC 12228]
gi|57866379|ref|YP_188012.1| ribosomal subunit interface protein [Staphylococcus epidermidis
RP62A]
gi|251810186|ref|ZP_04824659.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
BCM-HMP0060]
gi|282875667|ref|ZP_06284538.1| ribosomal subunit interface protein [Staphylococcus epidermidis
SK135]
gi|293368214|ref|ZP_06614843.1| ribosomal subunit interface protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417647670|ref|ZP_12297504.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU144]
gi|417656302|ref|ZP_12305989.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU028]
gi|417658365|ref|ZP_12307999.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU045]
gi|417910205|ref|ZP_12553932.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU037]
gi|417911703|ref|ZP_12555403.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU105]
gi|417914175|ref|ZP_12557828.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU109]
gi|418326016|ref|ZP_12937212.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU071]
gi|418411277|ref|ZP_12984545.1| ribosomal subunit interface protein [Staphylococcus epidermidis
BVS058A4]
gi|418605507|ref|ZP_13168830.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU041]
gi|418608456|ref|ZP_13171651.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU057]
gi|418608767|ref|ZP_13171949.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU065]
gi|418611174|ref|ZP_13174269.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU117]
gi|418618001|ref|ZP_13180885.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU120]
gi|418622543|ref|ZP_13185288.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU123]
gi|418623655|ref|ZP_13186357.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU125]
gi|418625668|ref|ZP_13188310.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU126]
gi|418629726|ref|ZP_13192222.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU127]
gi|418665868|ref|ZP_13227305.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU081]
gi|419768251|ref|ZP_14294383.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-250]
gi|419771166|ref|ZP_14297226.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-K]
gi|420162886|ref|ZP_14669641.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM095]
gi|420166740|ref|ZP_14673421.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM088]
gi|420167328|ref|ZP_14673989.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM087]
gi|420171419|ref|ZP_14677961.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM070]
gi|420172082|ref|ZP_14678597.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM067]
gi|420182476|ref|ZP_14688612.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM049]
gi|420185953|ref|ZP_14692029.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM040]
gi|420187929|ref|ZP_14693944.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM039]
gi|420197769|ref|ZP_14703490.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM020]
gi|420201250|ref|ZP_14706875.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM018]
gi|420206817|ref|ZP_14712322.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM008]
gi|420208224|ref|ZP_14713694.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM003]
gi|420213595|ref|ZP_14718901.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05005]
gi|420216603|ref|ZP_14721807.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05001]
gi|420219571|ref|ZP_14724586.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04008]
gi|420222339|ref|ZP_14727260.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH08001]
gi|420225265|ref|ZP_14730099.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH06004]
gi|420226661|ref|ZP_14731440.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05003]
gi|420228981|ref|ZP_14733692.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04003]
gi|420231338|ref|ZP_14735990.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051668]
gi|420233977|ref|ZP_14738551.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051475]
gi|421607648|ref|ZP_16048886.1| ribosomal subunit interface protein [Staphylococcus epidermidis
AU12-03]
gi|81675199|sp|Q5HQX7.1|Y419_STAEQ RecName: Full=Uncharacterized protein SERP0419
gi|81843991|sp|Q8CTF2.1|Y534_STAES RecName: Full=Uncharacterized protein SE_0534
gi|27314995|gb|AAO04131.1|AE016745_230 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637037|gb|AAW53825.1| ribosomal subunit interface protein [Staphylococcus epidermidis
RP62A]
gi|251806238|gb|EES58895.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295694|gb|EFA88217.1| ribosomal subunit interface protein [Staphylococcus epidermidis
SK135]
gi|291317637|gb|EFE58054.1| ribosomal subunit interface protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329723283|gb|EGG59813.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU144]
gi|329736753|gb|EGG73018.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU028]
gi|329737992|gb|EGG74216.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU045]
gi|341651042|gb|EGS74849.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU037]
gi|341652214|gb|EGS76003.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU105]
gi|341653259|gb|EGS77030.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU109]
gi|365226927|gb|EHM68138.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU071]
gi|374401355|gb|EHQ72429.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU057]
gi|374402271|gb|EHQ73304.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU041]
gi|374407985|gb|EHQ78829.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU081]
gi|374409946|gb|EHQ80715.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU065]
gi|374817064|gb|EHR81254.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU120]
gi|374824069|gb|EHR88051.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU117]
gi|374826299|gb|EHR90198.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU123]
gi|374829965|gb|EHR93756.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU125]
gi|374833257|gb|EHR96952.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU127]
gi|374835185|gb|EHR98808.1| ribosomal subunit interface protein [Staphylococcus epidermidis
VCU126]
gi|383360462|gb|EID37858.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-250]
gi|383362137|gb|EID39494.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-K]
gi|394233113|gb|EJD78723.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM088]
gi|394235883|gb|EJD81433.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM095]
gi|394238065|gb|EJD83549.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM070]
gi|394238957|gb|EJD84414.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM087]
gi|394243553|gb|EJD88915.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM067]
gi|394250021|gb|EJD95223.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM049]
gi|394253045|gb|EJD98061.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM040]
gi|394255571|gb|EJE00520.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM039]
gi|394265355|gb|EJE10012.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM020]
gi|394273156|gb|EJE17591.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM018]
gi|394276920|gb|EJE21253.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM008]
gi|394282098|gb|EJE26310.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM003]
gi|394285171|gb|EJE29255.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05005]
gi|394288829|gb|EJE32729.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04008]
gi|394289391|gb|EJE33275.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH08001]
gi|394291630|gb|EJE35425.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05001]
gi|394293820|gb|EJE37522.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH06004]
gi|394298277|gb|EJE41854.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH05003]
gi|394299664|gb|EJE43199.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH04003]
gi|394302904|gb|EJE46338.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051668]
gi|394304670|gb|EJE48066.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIH051475]
gi|406656699|gb|EKC83100.1| ribosomal subunit interface protein [Staphylococcus epidermidis
AU12-03]
gi|410892821|gb|EKS40612.1| ribosomal subunit interface protein [Staphylococcus epidermidis
BVS058A4]
Length = 189
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N AD ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>gi|404417310|ref|ZP_10999112.1| ribosomal subunit interface protein [Staphylococcus arlettae
CVD059]
gi|403490323|gb|EJY95866.1| ribosomal subunit interface protein [Staphylococcus arlettae
CVD059]
Length = 189
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 111/193 (57%), Gaps = 15/193 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+NL +TD ++N++E+K+GK + ++ + V + V+ + + EVT+
Sbjct: 6 IHGENLTITDAIRNYIEDKIGK-LERYFNNVPNAIAHVKVKTYQ----NSATKIEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +YA IDL+++ ++R++RK K + + R KG +E ++V
Sbjct: 60 LKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTRVNRKSRD-KG-----DQEVFAEIV 113
Query: 223 E-NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E N AD + +N D I+R K F + P+ EA+ Q++ + HDF+ F + ET +
Sbjct: 114 EDNKADALDDTSQEN--DFEIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFTDRETDGTS 171
Query: 282 IVYKRKAGGYGVI 294
IVYKRK G YG+I
Sbjct: 172 IVYKRKDGKYGLI 184
>gi|420212401|ref|ZP_14717752.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM001]
gi|394279835|gb|EJE24132.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM001]
Length = 189
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVALRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N AD ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>gi|392955447|ref|ZP_10320978.1| Ribosome-associated factor Y [Bacillus macauensis ZFHKF-1]
gi|391878374|gb|EIT86963.1| Ribosome-associated factor Y [Bacillus macauensis ZFHKF-1]
Length = 187
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 28/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+KV K + ++ + D V L V + + EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKVAK-LQRYFNETPNTDAHVNLKVYNND-------QSVEVTI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++RAEE +YA+IDLV ++R++RK K K + + G + +
Sbjct: 57 -PMTGLLLRAEESHTDMYAAIDLVIEKLERQIRKHKTKVNRRAKQNGG---------IHE 106
Query: 221 VVENDAD-----VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
++ N AD V EEED+ F IVR K F++ P+ EAI Q++ + H F+ + +
Sbjct: 107 IIANSADATATAVIEEEEDEAFQ---IVREKRFDLKPMDTEEAILQMDLLGHSFFVYNHA 163
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
ETG N+VYKRK G YG+I P+
Sbjct: 164 ETGTTNVVYKRKDGRYGLIGPE 185
>gi|340750555|ref|ZP_08687395.1| sigma(54) modulation protein [Fusobacterium mortiferum ATCC 9817]
gi|340562419|gb|EEO35230.2| sigma(54) modulation protein [Fusobacterium mortiferum ATCC 9817]
Length = 200
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 28/203 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+K+ I GK L +TD +KN+ E K+G+ H ++ E+ + LS ++ G +
Sbjct: 18 MKMTIHGKQLVITDAIKNYAETKLGRVEKYHDGII-ELAINLSAVKLKTGNY------HT 70
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + V + DA+ +YA+ID VS +++ +L+K K+K ++ R
Sbjct: 71 AEVLAYLGGSTVKASCTDAD-LYAAIDGVSDVLEGQLKKHKDKIR---------TAVQSR 120
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPP--LTVSEAIEQLENVDHDFYGFR 273
EP+ + V+ D + + E+ E V + +PP + V EAI QLE ++ F+ F
Sbjct: 121 EPMIRKVKYDPETNTVEK------EAAVNVVKVYLPPKPMDVEEAILQLEILNRAFFPFT 174
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ETGE+NIVYKRK G YG I P
Sbjct: 175 NAETGEMNIVYKRKDGDYGHIEP 197
>gi|239623402|ref|ZP_04666433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522368|gb|EEQ62234.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 187
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 26/209 (12%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFG 148
+S + L ++ I G+N+E+T +K VE+K+GK L+H EV V LS +
Sbjct: 3 LSQEKELMIMRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-- 58
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
++ EVT+ K + +RAEE + +Y SIDLV +I+R++R+ ++K D +
Sbjct: 59 -----QKIEVTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLIDKKQAAIS 112
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
F++ + + D ++Q IV+ K F + P EA Q+E + H
Sbjct: 113 FSQAFIE---EEDEVQDDEIQ------------IVKTKKFAIKPTIPEEACLQMEMLGHS 157
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY F N +T ++N+VYKRK G YG+I P+
Sbjct: 158 FYVFLNADTDQVNVVYKRKNGTYGLIEPE 186
>gi|28210085|ref|NP_781029.1| SSU ribosomal protein S30P [Clostridium tetani E88]
gi|28202521|gb|AAO34966.1| SSU ribosomal protein S30P [Clostridium tetani E88]
Length = 176
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 32/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + GKN+E+T+ ++N VE+K+ K + K+ E V LSV K +I EV
Sbjct: 1 MRITVTGKNIEITNALRNVVEKKLEK-LDKYFKPDVEAQVTLSVE-----KNRQI--IEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ +GV+ R EE E +YASIDLV ++R++RK K K + HG ++
Sbjct: 53 TI--PFNGVILRGEEANEDMYASIDLVIDKLERQIRKQKTKLQKRMHGDSLR-------- 102
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
Q + + E D F +E IV+ K F + P++ EA+ Q+E + H+F+ F +
Sbjct: 103 ---FQFI-------PDYEGDKFKEESKIVKTKRFAIKPMSSEEAVLQMELIGHNFFVFES 152
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
+TGE+N+VYKRK G YG+I P
Sbjct: 153 ADTGEVNVVYKRKDGNYGLIEP 174
>gi|290890911|ref|ZP_06553975.1| hypothetical protein AWRIB429_1365 [Oenococcus oeni AWRIB429]
gi|421194382|ref|ZP_15651603.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB568]
gi|421196114|ref|ZP_15653305.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB576]
gi|290479310|gb|EFD87970.1| hypothetical protein AWRIB429_1365 [Oenococcus oeni AWRIB429]
gi|399978016|gb|EJO11982.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB576]
gi|399978110|gb|EJO12072.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Oenococcus oeni AWRIB568]
Length = 190
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ TD + N+++ EK+ + + ++ + ++VR + + EVT
Sbjct: 6 IRGENMSTTDVINNYIKLRLEKLNNYIDQKNNPIAHINVR--------KYNEKTFKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE Y ++DLVS+ + R++RK K + + R +GF + E +
Sbjct: 58 I-PLPYLTLRAEETQSDFYNAVDLVSAKLLRQIRKFKTRVNRKSRE-RGFKGIDFNEAID 115
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
V S+ +D +D ++R K + P+ + EA+ Q+E +DHDF+ F N +T +
Sbjct: 116 PV-------PSDTNEDKKID--VIRRKNLSLKPMDIEEAVLQMEMLDHDFFLFLNSDTNQ 166
Query: 280 INIVYKRKAGGYGVI 294
++IVYKR G YG+I
Sbjct: 167 LDIVYKRDDGKYGLI 181
>gi|403068170|ref|ZP_10909502.1| hypothetical protein ONdio_01079 [Oceanobacillus sp. Ndiop]
Length = 186
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 108/198 (54%), Gaps = 23/198 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+NLE+T +K++VE+K+GK + +V V LSV E +R EVT+
Sbjct: 5 IRGENLEVTGAIKDYVEKKIGKLERYFDNAPASDVHVNLSVYNDE-------QRIEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PV 218
+ ++R+E +YA++DL ++R++RK K K NR K+++ P
Sbjct: 57 PMTNLLLRSEVQHVDLYAAVDLAVDKLERQIRKHKTK----------INR-KIKQNGSPK 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E + + +D D IVR K F + P+ EAI Q++ + H+F+ F N+E+G
Sbjct: 106 HMFAEMEKLASTVAVEDKTDDLEIVRTKRFNLKPMDSEEAILQMDMLGHEFFVFTNDESG 165
Query: 279 EINIVYKRKAGGYGVIIP 296
E N+VY+R+ G YG+I P
Sbjct: 166 ETNVVYRRRDGRYGLIEP 183
>gi|422346839|ref|ZP_16427753.1| ribosomal subunit interface protein [Clostridium perfringens
WAL-14572]
gi|373225672|gb|EHP48003.1| ribosomal subunit interface protein [Clostridium perfringens
WAL-14572]
Length = 185
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 109/201 (54%), Gaps = 26/201 (12%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I
Sbjct: 5 DDMKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI--- 55
Query: 157 EVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
+ + +G++ R EE + +Y SIDLV I+R++RK K + S R+ R
Sbjct: 56 -IEVMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHI 112
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P+ D++ E+E IV+ K F++ P+ EA+ Q+E + HDF+ F++
Sbjct: 113 DPI-------EDMKEEKEAK------IVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDP 159
Query: 276 ETGEINIVYKRKAGGYGVIIP 296
ET ++N+VYKRK G YG+I P
Sbjct: 160 ETNQLNVVYKRKDGNYGLIEP 180
>gi|73663273|ref|YP_302054.1| ribosome-associated protein Y [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123641963|sp|Q49VV1.1|Y1964_STAS1 RecName: Full=Uncharacterized protein SSP1964
gi|72495788|dbj|BAE19109.1| putative ribosome-associated protein Y [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 190
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 113/199 (56%), Gaps = 17/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HMKGFNRLKVR 215
T+ KK +RAEE + +YA IDL+++ ++R++RK K + + R + F L
Sbjct: 57 TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 115
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ ++ +ND E E DN ++ I+R K F + P+ EA+ Q++ + HDF+ F +
Sbjct: 116 KEAVEI-QND-----ENEADNEIE--IIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDR 167
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET +IVYKRK G YG+I
Sbjct: 168 ETDGTSIVYKRKDGKYGLI 186
>gi|386360199|ref|YP_006058444.1| ribosomal subunit interface protein [Thermus thermophilus JL-18]
gi|383509226|gb|AFH38658.1| ribosomal subunit interface protein [Thermus thermophilus JL-18]
Length = 186
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 113/205 (55%), Gaps = 24/205 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR- 154
++ KLI G+NLE+TD ++++VE+K+ + + ++ V LS+ G P +
Sbjct: 1 MNIYKLI--GRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGS-----PHVEK 52
Query: 155 --RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNR 211
R E+ + G+VR EE+ +YA+ID ++ ++++ +E+ RH +G
Sbjct: 53 KARAEIQV-DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQG--- 108
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
P +V + +A + EEE+ IVR+K FEM P+ EA Q+E + H F+
Sbjct: 109 ----PPPPEVRDLEALRKPEEEEGP----KIVRVKRFEMKPMDPEEAAFQMEALGHSFFV 160
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
FRN +T EIN++Y+RK G YG+I P
Sbjct: 161 FRNAKTDEINVIYRRKDGNYGLIEP 185
>gi|242372986|ref|ZP_04818560.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
M23864:W1]
gi|242349312|gb|EES40913.1| ribosome-associated inhibitor protein Y [Staphylococcus epidermidis
M23864:W1]
Length = 191
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 10/196 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK +++ V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNNVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQEVFVAEVQ 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E +V EE DN D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 EATPE---EVSGAEEPDNDSDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETD 171
Query: 279 EINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 172 GTSIVYRRKDGKYGLI 187
>gi|257784786|ref|YP_003180003.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Atopobium
parvulum DSM 20469]
gi|257473293|gb|ACV51412.1| sigma 54 modulation protein/ribosomal protein S30EA [Atopobium
parvulum DSM 20469]
Length = 196
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 13/200 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
V + I G+ + +++ ++ HV++K+G A+ DV L V P + EV
Sbjct: 2 VDIKISGRKVSISEALRAHVDQKIGDALKVFDITPMSCDVVLRVDKNP--SNPDRKTTEV 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV-REP 217
T+F + + V ++ +YA+ID + + R+LRK K K + HMK + + +E
Sbjct: 60 TVFVRNNVVRVTAS-SDDMYAAIDEAADKVSRQLRKYKTKVVERRHHMKSERGIALTQED 118
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ ++E + +E+ DD +VR K+ ++ P+T EA+ Q + + HDFY F N T
Sbjct: 119 LANLIE----IPAEDLDDQ-----LVREKYVDLEPMTEEEALVQTDLLGHDFYVFVNSST 169
Query: 278 GEINIVYKRKAGGYGVIIPK 297
G N++Y RK GGYG+I PK
Sbjct: 170 GLTNVIYHRKNGGYGIIKPK 189
>gi|163942874|ref|YP_001647758.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
weihenstephanensis KBAB4]
gi|229014357|ref|ZP_04171476.1| Ribosome-associated factor Y [Bacillus mycoides DSM 2048]
gi|423369156|ref|ZP_17346587.1| ribosomal subunit interface protein [Bacillus cereus VD142]
gi|423597557|ref|ZP_17573557.1| ribosomal subunit interface protein [Bacillus cereus VD078]
gi|423660003|ref|ZP_17635172.1| ribosomal subunit interface protein [Bacillus cereus VDM022]
gi|163865071|gb|ABY46130.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
weihenstephanensis KBAB4]
gi|228746957|gb|EEL96841.1| Ribosome-associated factor Y [Bacillus mycoides DSM 2048]
gi|401078286|gb|EJP86601.1| ribosomal subunit interface protein [Bacillus cereus VD142]
gi|401239089|gb|EJR45521.1| ribosomal subunit interface protein [Bacillus cereus VD078]
gi|401303664|gb|EJS09225.1| ribosomal subunit interface protein [Bacillus cereus VDM022]
Length = 180
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V A + + EED+ +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|46199231|ref|YP_004898.1| ribosomal associated protein [Thermus thermophilus HB27]
gi|55981263|ref|YP_144560.1| ribosomal subunit interface protein [Thermus thermophilus HB8]
gi|381190789|ref|ZP_09898305.1| ribosomal subunit interface protein [Thermus sp. RL]
gi|384431475|ref|YP_005640835.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
thermophilus SG0.5JP17-16]
gi|46196856|gb|AAS81271.1| putative ribosomal associated protein [Thermus thermophilus HB27]
gi|55772676|dbj|BAD71117.1| ribosomal subunit interface protein [Thermus thermophilus HB8]
gi|333966943|gb|AEG33708.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermus
thermophilus SG0.5JP17-16]
gi|380451357|gb|EIA38965.1| ribosomal subunit interface protein [Thermus sp. RL]
Length = 186
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 113/205 (55%), Gaps = 24/205 (11%)
Query: 96 LSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR- 154
++ KLI G+NLE+TD ++++VE+K+ + + ++ V LS+ G P +
Sbjct: 1 MNIYKLI--GRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGS-----PHVEK 52
Query: 155 --RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNR 211
R E+ + G+VR EE+ +YA+ID ++ ++++ +E+ RH +G
Sbjct: 53 KARAEIQV-DLPGGLVRVEEEDADLYAAIDRAVDRLETQVKRFRERRYVGKRHSYQG--- 108
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
P +V + +A + EEE+ IVR+K FEM P+ EA Q+E + H F+
Sbjct: 109 ----PPPPEVRDLEALRKPEEEEGP----RIVRVKRFEMKPMDPEEAAFQMEALGHSFFV 160
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
FRN +T EIN++Y+RK G YG+I P
Sbjct: 161 FRNAKTDEINVIYRRKDGNYGLIEP 185
>gi|30265214|ref|NP_847591.1| ribosomal subunit interface protein [Bacillus anthracis str. Ames]
gi|47530736|ref|YP_022085.1| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49188025|ref|YP_031278.1| ribosomal subunit interface protein [Bacillus anthracis str.
Sterne]
gi|52140376|ref|YP_086454.1| ribosomal subunit interface protein [Bacillus cereus E33L]
gi|65317161|ref|ZP_00390120.1| COG1544: Ribosome-associated protein Y (PSrp-1) [Bacillus anthracis
str. A2012]
gi|118480227|ref|YP_897378.1| sigma 54 modulation protein/30S ribosomal protein S30 [Bacillus
thuringiensis str. Al Hakam]
gi|165869962|ref|ZP_02214619.1| ribosomal subunit interface protein [Bacillus anthracis str. A0488]
gi|167635298|ref|ZP_02393613.1| ribosomal subunit interface protein [Bacillus anthracis str. A0442]
gi|167640491|ref|ZP_02398754.1| ribosomal subunit interface protein [Bacillus anthracis str. A0193]
gi|170687990|ref|ZP_02879203.1| ribosomal subunit interface protein [Bacillus anthracis str. A0465]
gi|170707806|ref|ZP_02898257.1| ribosomal subunit interface protein [Bacillus anthracis str. A0389]
gi|177652995|ref|ZP_02935322.1| ribosomal subunit interface protein [Bacillus anthracis str. A0174]
gi|190567823|ref|ZP_03020735.1| ribosomal subunit interface protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|196032848|ref|ZP_03100261.1| ribosomal subunit interface protein [Bacillus cereus W]
gi|196039551|ref|ZP_03106856.1| ribosomal subunit interface protein [Bacillus cereus NVH0597-99]
gi|196045660|ref|ZP_03112890.1| ribosomal subunit interface protein [Bacillus cereus 03BB108]
gi|218906364|ref|YP_002454198.1| ribosomal subunit interface protein [Bacillus cereus AH820]
gi|225867152|ref|YP_002752530.1| ribosomal subunit interface protein [Bacillus cereus 03BB102]
gi|227817948|ref|YP_002817957.1| ribosomal subunit interface protein [Bacillus anthracis str. CDC
684]
gi|228917792|ref|ZP_04081331.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228942324|ref|ZP_04104863.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228948907|ref|ZP_04111180.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228975253|ref|ZP_04135811.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981891|ref|ZP_04142186.1| Ribosome-associated factor Y [Bacillus thuringiensis Bt407]
gi|229094283|ref|ZP_04225359.1| Ribosome-associated factor Y [Bacillus cereus Rock3-42]
gi|229124695|ref|ZP_04253876.1| Ribosome-associated factor Y [Bacillus cereus 95/8201]
gi|229175859|ref|ZP_04303357.1| Ribosome-associated factor Y [Bacillus cereus MM3]
gi|229187399|ref|ZP_04314542.1| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1]
gi|229600659|ref|YP_002869408.1| ribosomal subunit interface protein [Bacillus anthracis str. A0248]
gi|254686387|ref|ZP_05150246.1| ribosomal subunit interface protein [Bacillus anthracis str.
CNEVA-9066]
gi|254735592|ref|ZP_05193299.1| ribosomal subunit interface protein [Bacillus anthracis str.
Western North America USA6153]
gi|254744320|ref|ZP_05202000.1| ribosomal subunit interface protein [Bacillus anthracis str. Kruger
B]
gi|254755618|ref|ZP_05207651.1| ribosomal subunit interface protein [Bacillus anthracis str.
Vollum]
gi|254757073|ref|ZP_05209101.1| ribosomal subunit interface protein [Bacillus anthracis str.
Australia 94]
gi|301056651|ref|YP_003794862.1| ribosomal subunit interface protein [Bacillus cereus biovar
anthracis str. CI]
gi|376269086|ref|YP_005121798.1| Ribosomal subunit interface protein [Bacillus cereus F837/76]
gi|384189267|ref|YP_005575163.1| sigma (54) modulation protein/30S ribosomal protein S30 [Bacillus
thuringiensis serovar chinensis CT-43]
gi|386739043|ref|YP_006212224.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. H9401]
gi|410677597|ref|YP_006929968.1| sigma (54) modulation protein/SSUribosomal protein S30P [Bacillus
thuringiensis Bt407]
gi|421508939|ref|ZP_15955849.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. UR-1]
gi|421640940|ref|ZP_16081512.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. BF1]
gi|423554365|ref|ZP_17530691.1| ribosomal subunit interface protein [Bacillus cereus ISP3191]
gi|452201678|ref|YP_007481759.1| Ribosomal subunit interface protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|30259891|gb|AAP29077.1| ribosomal subunit interface protein [Bacillus anthracis str. Ames]
gi|47505884|gb|AAT34560.1| ribosomal subunit interface protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181952|gb|AAT57328.1| ribosomal subunit interface protein [Bacillus anthracis str.
Sterne]
gi|51973845|gb|AAU15395.1| ribosomal subunit interface protein [Bacillus cereus E33L]
gi|118419452|gb|ABK87871.1| SSU ribosomal protein S30P [Bacillus thuringiensis str. Al Hakam]
gi|164714285|gb|EDR19805.1| ribosomal subunit interface protein [Bacillus anthracis str. A0488]
gi|167511534|gb|EDR86917.1| ribosomal subunit interface protein [Bacillus anthracis str. A0193]
gi|167529341|gb|EDR92093.1| ribosomal subunit interface protein [Bacillus anthracis str. A0442]
gi|170127363|gb|EDS96239.1| ribosomal subunit interface protein [Bacillus anthracis str. A0389]
gi|170668099|gb|EDT18849.1| ribosomal subunit interface protein [Bacillus anthracis str. A0465]
gi|172081770|gb|EDT66840.1| ribosomal subunit interface protein [Bacillus anthracis str. A0174]
gi|190561239|gb|EDV15212.1| ribosomal subunit interface protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|195994277|gb|EDX58232.1| ribosomal subunit interface protein [Bacillus cereus W]
gi|196023491|gb|EDX62168.1| ribosomal subunit interface protein [Bacillus cereus 03BB108]
gi|196029711|gb|EDX68313.1| ribosomal subunit interface protein [Bacillus cereus NVH0597-99]
gi|218538065|gb|ACK90463.1| ribosomal subunit interface protein [Bacillus cereus AH820]
gi|225790392|gb|ACO30609.1| ribosomal subunit interface protein [Bacillus cereus 03BB102]
gi|227004908|gb|ACP14651.1| ribosomal subunit interface protein [Bacillus anthracis str. CDC
684]
gi|228596103|gb|EEK53780.1| Ribosome-associated factor Y [Bacillus cereus BGSC 6E1]
gi|228607592|gb|EEK64916.1| Ribosome-associated factor Y [Bacillus cereus MM3]
gi|228658790|gb|EEL14449.1| Ribosome-associated factor Y [Bacillus cereus 95/8201]
gi|228689136|gb|EEL42959.1| Ribosome-associated factor Y [Bacillus cereus Rock3-42]
gi|228778003|gb|EEM26275.1| Ribosome-associated factor Y [Bacillus thuringiensis Bt407]
gi|228784532|gb|EEM32553.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228810663|gb|EEM57011.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228817368|gb|EEM63454.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228841841|gb|EEM86949.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229265067|gb|ACQ46704.1| ribosomal subunit interface protein [Bacillus anthracis str. A0248]
gi|300378820|gb|ADK07724.1| ribosomal subunit interface protein [Bacillus cereus biovar
anthracis str. CI]
gi|326942976|gb|AEA18872.1| sigma (54) modulation protein/SSUribosomal protein S30P [Bacillus
thuringiensis serovar chinensis CT-43]
gi|364514886|gb|AEW58285.1| Ribosomal subunit interface protein [Bacillus cereus F837/76]
gi|384388895|gb|AFH86556.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
anthracis str. H9401]
gi|401181163|gb|EJQ88316.1| ribosomal subunit interface protein [Bacillus cereus ISP3191]
gi|401821115|gb|EJT20275.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. UR-1]
gi|403391934|gb|EJY89198.1| sigma 54 modulation protein/30S ribosomal protein S30P [Bacillus
anthracis str. BF1]
gi|409176726|gb|AFV21031.1| sigma (54) modulation protein/SSUribosomal protein S30P [Bacillus
thuringiensis Bt407]
gi|452107071|gb|AGG04011.1| Ribosomal subunit interface protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 180
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 113/197 (57%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V A + + EED+ +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|110799719|ref|YP_696851.1| ribosomal subunit interface protein [Clostridium perfringens ATCC
13124]
gi|168205591|ref|ZP_02631596.1| ribosomal subunit interface protein [Clostridium perfringens E str.
JGS1987]
gi|168213724|ref|ZP_02639349.1| ribosomal subunit interface protein [Clostridium perfringens CPE
str. F4969]
gi|168215801|ref|ZP_02641426.1| ribosomal subunit interface protein [Clostridium perfringens NCTC
8239]
gi|169344213|ref|ZP_02865195.1| ribosomal subunit interface protein [Clostridium perfringens C str.
JGS1495]
gi|182623997|ref|ZP_02951785.1| ribosomal subunit interface protein [Clostridium perfringens D str.
JGS1721]
gi|422875086|ref|ZP_16921571.1| ribosomal subunit interface protein [Clostridium perfringens F262]
gi|110674366|gb|ABG83353.1| ribosomal subunit interface protein [Clostridium perfringens ATCC
13124]
gi|169297672|gb|EDS79772.1| ribosomal subunit interface protein [Clostridium perfringens C str.
JGS1495]
gi|170662953|gb|EDT15636.1| ribosomal subunit interface protein [Clostridium perfringens E str.
JGS1987]
gi|170714764|gb|EDT26946.1| ribosomal subunit interface protein [Clostridium perfringens CPE
str. F4969]
gi|177910890|gb|EDT73244.1| ribosomal subunit interface protein [Clostridium perfringens D str.
JGS1721]
gi|182381981|gb|EDT79460.1| ribosomal subunit interface protein [Clostridium perfringens NCTC
8239]
gi|380304081|gb|EIA16374.1| ribosomal subunit interface protein [Clostridium perfringens F262]
Length = 179
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 109/199 (54%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT+ +K+ VE+K+ K + K+ E LSV K +I +
Sbjct: 1 MKVTVHAKNIELTNALKDCVEKKISK-LSKYFEPGVEAKATLSVE-----KNKQI----I 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G++ R EE + +Y SIDLV I+R++RK K + S R+ R +P
Sbjct: 51 EVMIPFNGILLRGEESTDDMYKSIDLVEEKIERQIRKQKTRLSKKNRY--DSLRFAHIDP 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D++ E+E IV+ K F++ P+ EA+ Q+E + HDF+ F++ ET
Sbjct: 109 I-------EDMKEEKEAK------IVKTKRFDVKPMGAEEAVLQMELIGHDFFVFQDPET 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG+I P
Sbjct: 156 NQLNVVYKRKDGNYGLIEP 174
>gi|429217935|ref|YP_007179579.1| ribosomal subunit interface protein [Deinococcus peraridilitoris
DSM 19664]
gi|429128798|gb|AFZ65813.1| ribosomal subunit interface protein [Deinococcus peraridilitoris
DSM 19664]
Length = 191
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 112/201 (55%), Gaps = 16/201 (7%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
KLI G+++++TD +K++++EK+ + + + S + + V L VR + R R EV
Sbjct: 5 KLI--GRDVDVTDALKDYLDEKLSR-LERFSDQITDAKVVLQVR--DVRDTMRRNRVEVQ 59
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREP 217
L +G+VRAEE +YA+ID VS +++R+LRK+K K + H +++ + V P
Sbjct: 60 L-NVPNGLVRAEEHHSDMYAAIDKVSDVLERQLRKVKTKYLKRRHDNNVEDTGGM-VAAP 117
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+T ++ + + IVR K ++ P++ +A+ ++E + HDFY F N T
Sbjct: 118 LTDIIAASDEDDDAAPE-------IVRQKRVDLRPMSPEDAVMEMEALHHDFYVFMNAST 170
Query: 278 GEINIVYKRKAGGYGVIIPKG 298
+VY+R+ G YG+I P
Sbjct: 171 ESCAVVYRRRDGNYGLIEPNA 191
>gi|366086469|ref|ZP_09452954.1| ribosomal subunit interface protein [Lactobacillus zeae KCTC 3804]
Length = 185
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ V
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDVD 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 112 TSAP------AEPKPAEDDDNLT---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 162
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 163 DTNGTSIVYKRRDGRYGLI 181
>gi|229063846|ref|ZP_04200150.1| Ribosome-associated factor Y [Bacillus cereus AH603]
gi|229169897|ref|ZP_04297593.1| Ribosome-associated factor Y [Bacillus cereus AH621]
gi|423595628|ref|ZP_17571658.1| ribosomal subunit interface protein [Bacillus cereus VD048]
gi|228613611|gb|EEK70740.1| Ribosome-associated factor Y [Bacillus cereus AH621]
gi|228716483|gb|EEL68187.1| Ribosome-associated factor Y [Bacillus cereus AH603]
gi|401221522|gb|EJR28136.1| ribosomal subunit interface protein [Bacillus cereus VD048]
Length = 180
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSIKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V A + + EED+ +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|387928636|ref|ZP_10131314.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus PB1]
gi|387588222|gb|EIJ80544.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus PB1]
Length = 184
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 17/193 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++ +VE+K+ K + + V V L + K EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKISKLERYFTETPKANVHVNLKTYSDKSAK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE E +YA+IDL++ ++R++RK K K + R N L T +
Sbjct: 58 PMTNLVLRAEEVHEDMYAAIDLIADKLERQIRKHKTKVNRKFREKGNVNSL-----FTTL 112
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+E + +V + EE++ IVR K F++ P+ EAI Q+ + H+F+ F N ET N
Sbjct: 113 ME-EPEVSAAEEENELE---IVRQKSFDLKPMDSEEAILQMNLLGHNFFVFTNAETNRTN 168
Query: 282 IVYKRKAGGYGVI 294
IVYKRK G YG+I
Sbjct: 169 IVYKRKDGRYGLI 181
>gi|392963545|ref|ZP_10328971.1| ribosomal subunit interface protein [Pelosinus fermentans DSM
17108]
gi|392451369|gb|EIW28363.1| ribosomal subunit interface protein [Pelosinus fermentans DSM
17108]
Length = 176
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 27/200 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+E+T +K +V ++ K + K+ + E+ L+V G R + L
Sbjct: 3 IIVRGKNIEITPALKEYVVKRTSK-ITKYFDTLGEITAILAVEKG---------RHIIEL 52
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+G ++R EE +Y SIDLV I++++ K K K S R+K
Sbjct: 53 TVPVNGMILRGEEATADMYTSIDLVVDKIEKQIEKYKTKIS---------RRMKAGTFKG 103
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
++V A + EE +V+ K F + P+ + EAI Q+ V+HDFY F N ET E
Sbjct: 104 ELVAATAAPEVEELH-------VVKTKRFAVKPMDIEEAILQMNLVNHDFYVFSNSETEE 156
Query: 280 INIVYKRKAGGYGVIIPKGN 299
+N+VY+RK G YG+I P N
Sbjct: 157 VNVVYRRKDGRYGLIEPDFN 176
>gi|358053702|ref|ZP_09147426.1| ribosomal subunit interface protein [Staphylococcus simiae CCM
7213]
gi|357256807|gb|EHJ07131.1| ribosomal subunit interface protein [Staphylococcus simiae CCM
7213]
Length = 187
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 108/196 (55%), Gaps = 15/196 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL+++ ++R++RK K + + R +R V
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSR-----DRGDQDVFV 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ E AD +E DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 111 AELQEAPAD--NESSDDNDIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETD 166
Query: 279 EINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 167 GTSIVYRRKDGKYGLI 182
>gi|421052303|ref|ZP_15515294.1| ribosomal subunit interface protein [Pelosinus fermentans B4]
gi|421058320|ref|ZP_15521031.1| ribosomal subunit interface protein [Pelosinus fermentans B3]
gi|421069113|ref|ZP_15530285.1| sigma 54 modulation protein/ribosomal protein S30EA [Pelosinus
fermentans A11]
gi|392443406|gb|EIW20947.1| ribosomal subunit interface protein [Pelosinus fermentans B4]
gi|392450133|gb|EIW27186.1| sigma 54 modulation protein/ribosomal protein S30EA [Pelosinus
fermentans A11]
gi|392461051|gb|EIW37282.1| ribosomal subunit interface protein [Pelosinus fermentans B3]
Length = 176
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 104/200 (52%), Gaps = 27/200 (13%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKN+E+T +K +V ++ K + K+ + E+ L+V G R + L
Sbjct: 3 IIVRGKNIEITPALKEYVVKRTNK-ITKYFDTLGEITAILAVEKG---------RHIIEL 52
Query: 161 FTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+G ++R EE +Y SIDLV I++++ K K K S R+K
Sbjct: 53 TVPVNGMILRGEEATADMYTSIDLVVDKIEKQIEKYKTKIS---------RRMKAGTFKG 103
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
++V A + EE +V+ K F + P+ + EAI Q+ V+HDFY F N ET E
Sbjct: 104 ELVAATAAPEVEELH-------VVKTKRFAVKPMDIEEAILQMNLVNHDFYVFSNSETEE 156
Query: 280 INIVYKRKAGGYGVIIPKGN 299
+N+VY+RK G YG+I P N
Sbjct: 157 VNVVYRRKDGRYGLIEPDFN 176
>gi|354585139|ref|ZP_09004029.1| ribosomal subunit interface protein [Paenibacillus lactis 154]
gi|353189159|gb|EHB54671.1| ribosomal subunit interface protein [Paenibacillus lactis 154]
Length = 187
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL--VREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+ +E+TD +K++V++K+ + + K+ E V LSV G + EVT+
Sbjct: 5 IRGQQIEVTDALKDYVDKKLSR-LDKYFEAPPTSEGYVTLSVVRG-------LHTVEVTI 56
Query: 161 FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
GVV RAE+ ++ +YASID V ++R++RK K K + R G L
Sbjct: 57 --PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIRQEGGLKTL------- 107
Query: 220 QVVENDADV--QSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V N A Q+E E D + D +VR K F M P+ V EAI Q+ V H+F+ F N +
Sbjct: 108 -VAGNGAATATQTEVEQDEYEDHYEVVRTKRFTMKPMDVEEAILQMNMVGHNFFVFSNID 166
Query: 277 TGEINIVYKRKAGGYGVI 294
T E+N+VYKR G YG+I
Sbjct: 167 TQEVNVVYKRNDGKYGLI 184
>gi|377809275|ref|YP_005004496.1| Sigma 54 modulation protein / S30EA ribosomal protein [Pediococcus
claussenii ATCC BAA-344]
gi|361056016|gb|AEV94820.1| Sigma 54 modulation protein / S30EA ribosomal protein [Pediococcus
claussenii ATCC BAA-344]
Length = 188
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 20/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
++G+N+E+T+ ++++VE+++GK + K+ + V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKRIGK-INKYFDDGSTPKAHVNLKVYQDKTAK------VEVTI 58
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
V+RAEE + +YAS+DLV+ ++R++RK K K + R KGF ++V P
Sbjct: 59 -PMSALVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRE-KGFKGVEV--P--- 111
Query: 221 VVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
++A EE DD V E IVR K + P+ EAI Q++ + H+F+ + + E+G
Sbjct: 112 ---DEASTNDEEFDDEKVSEFDIVRTKQISLKPMDSEEAILQMDMLGHNFFIYEDAESGA 168
Query: 280 INIVYKRKAGGYGVI 294
++IVY+R+ G YG+I
Sbjct: 169 VDIVYRRRDGRYGLI 183
>gi|339627118|ref|YP_004718761.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sulfobacillus acidophilus TPY]
gi|379008500|ref|YP_005257951.1| 30S ribosomal protein S30P [Sulfobacillus acidophilus DSM 10332]
gi|339284907|gb|AEJ39018.1| sigma 54 modulation protein/ribosomal protein S30EA [Sulfobacillus
acidophilus TPY]
gi|361054762|gb|AEW06279.1| SSU ribosomal protein S30P [Sulfobacillus acidophilus DSM 10332]
Length = 171
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 32/201 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +I++GKN+E+TD +K+HV K+ K H RLSV K I EV
Sbjct: 1 MDVIVRGKNVEVTDALKDHVTRKLSKMSKYFDHQEVTAQARLSVE-----KDRHI--VEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE-- 216
T+ + ++R EE +Y ++D V ++R+L K K RLK R
Sbjct: 54 TVPVGGY-LLRGEEAHPDMYVAVDRVVDKLERQLDKYK-------------TRLKPRHLN 99
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V+E+ S EE D+ +VR K F P+TV EA+ Q+E + HDF+ F N E
Sbjct: 100 DTKGVLED-----SGEEGDS----ALVRRKTFPRKPMTVDEAMMQMELLGHDFFAFTNAE 150
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T IN++Y+R+ G YG++ P+
Sbjct: 151 TDTINVLYRRQDGNYGLLEPR 171
>gi|373463803|ref|ZP_09555385.1| ribosomal subunit interface protein [Lactobacillus kisonensis
F0435]
gi|371763817|gb|EHO52270.1| ribosomal subunit interface protein [Lactobacillus kisonensis
F0435]
Length = 195
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 18/203 (8%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGP 151
G + + I+G+N+E+T ++++VE+++ K + K+ L V L V + K
Sbjct: 4 GEIVMLMFNIRGENIEVTQAIRDYVEKRISK-LEKYFEKDLKNTAHVNLKVYSDKQAK-- 60
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
EVT+ + +RAEE + +YAS+DLV+ ++R++RK K K + R KGF
Sbjct: 61 ----VEVTI-PLPYLTLRAEEMSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKN 114
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L+ Q AD QS+ DN +VR K + P+ EAI Q++ + HDF+
Sbjct: 115 LEFAPTQEQ-----ADAQSDS--DNESKFQVVRTKQLALKPMDNEEAILQMDMLGHDFFI 167
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
+ + ET INIVY+R G YG+I
Sbjct: 168 YEDAETSGINIVYRRNDGRYGLI 190
>gi|335357611|ref|ZP_08549481.1| ribosome-associated factor Y [Lactobacillus animalis KCTC 3501]
Length = 184
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+K+ K V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKKLSKLEKYFEDTSNSTAHVNLKVYSDKNSK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF +
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKLNRKSRE-KGFKHM----- 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ V + Q+E+ED F +VR K + P+ V EAI Q++ + HDF+ + + ET
Sbjct: 109 --EFVPTEDPKQAEKEDKKFE---VVRTKSVSLKPMDVEEAILQMDMLGHDFFIYEDAET 163
Query: 278 GEINIVYKRKAGGYGVI 294
NIVY+R+ G YG+I
Sbjct: 164 EGTNIVYRRRDGRYGLI 180
>gi|229135997|ref|ZP_04264757.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST196]
gi|423490334|ref|ZP_17467016.1| ribosomal subunit interface protein [Bacillus cereus BtB2-4]
gi|423496058|ref|ZP_17472702.1| ribosomal subunit interface protein [Bacillus cereus CER057]
gi|423497148|ref|ZP_17473765.1| ribosomal subunit interface protein [Bacillus cereus CER074]
gi|423513367|ref|ZP_17489897.1| ribosomal subunit interface protein [Bacillus cereus HuA2-1]
gi|423519843|ref|ZP_17496324.1| ribosomal subunit interface protein [Bacillus cereus HuA2-4]
gi|423670706|ref|ZP_17645735.1| ribosomal subunit interface protein [Bacillus cereus VDM034]
gi|423673067|ref|ZP_17648006.1| ribosomal subunit interface protein [Bacillus cereus VDM062]
gi|228647455|gb|EEL03530.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST196]
gi|401149894|gb|EJQ57361.1| ribosomal subunit interface protein [Bacillus cereus CER057]
gi|401157422|gb|EJQ64820.1| ribosomal subunit interface protein [Bacillus cereus HuA2-4]
gi|401162868|gb|EJQ70221.1| ribosomal subunit interface protein [Bacillus cereus CER074]
gi|401294993|gb|EJS00618.1| ribosomal subunit interface protein [Bacillus cereus VDM034]
gi|401311167|gb|EJS16475.1| ribosomal subunit interface protein [Bacillus cereus VDM062]
gi|402430013|gb|EJV62095.1| ribosomal subunit interface protein [Bacillus cereus BtB2-4]
gi|402445611|gb|EJV77480.1| ribosomal subunit interface protein [Bacillus cereus HuA2-1]
Length = 180
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E A + + EED+ +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|289551388|ref|YP_003472292.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
HKU09-01]
gi|385784990|ref|YP_005761163.1| putative S30EA family ribosomal protein [Staphylococcus lugdunensis
N920143]
gi|418415772|ref|ZP_12988975.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636851|ref|ZP_13199189.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
VCU139]
gi|289180919|gb|ADC88164.1| Ribosomal subunit interface protein [Staphylococcus lugdunensis
HKU09-01]
gi|339895246|emb|CCB54569.1| putative S30EA family ribosomal protein [Staphylococcus lugdunensis
N920143]
gi|374840412|gb|EHS03906.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
VCU139]
gi|410873630|gb|EKS21564.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 190
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 31/206 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYANSA--------TK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNR 211
EVT+ K+ +RAEE + +YA+IDLV+ ++R++RK K K DHG
Sbjct: 54 IEVTI-PLKNVTLRAEERHDDLYAAIDLVNDKLERQVRKYKTRVNRKNRDHGDQEVFVAE 112
Query: 212 LKVREPV---TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
+ P +V ND+D++ I+R K F + P+ EA+ Q+ + HD
Sbjct: 113 VAEATPEPSELEVETNDSDIE------------IIRSKHFSLKPMDSEEAVLQMNLLGHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVI 294
F+ F + ET +IVY+RK G YG+I
Sbjct: 161 FFVFADRETEGTSIVYRRKDGKYGLI 186
>gi|403382582|ref|ZP_10924639.1| ribosome-associated factor y [Paenibacillus sp. JC66]
Length = 184
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 22/201 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G N+E+T +++ +VE+K+GK S L E +V L V ++R E
Sbjct: 1 MKFNIRGANMEVTPSLREYVEKKLGKLERYFESPLTSEANVTLRVVKD-------VQRVE 53
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ GV+ RAE+ + +YASID V ++R++RK K + + R G +LK
Sbjct: 54 VTI--PLTGVLLRAEDKSNDMYASIDAVVDKLERQIRKHKTRVNRKLRQESG--QLK--- 106
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
VE+ A E+D+F +VR K F + P+ V EAI Q+ + H+F+ F N E
Sbjct: 107 --NYFVEDPALNGGAAEEDSFE---LVRTKRFTLKPMDVEEAILQMNMIGHNFFVFSNTE 161
Query: 277 TGE-INIVYKRKAGGYGVIIP 296
E +N+VYKR G YG+I P
Sbjct: 162 DSENVNVVYKRHDGTYGLIEP 182
>gi|261409630|ref|YP_003245871.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Paenibacillus sp. Y412MC10]
gi|329928776|ref|ZP_08282625.1| ribosomal subunit interface protein [Paenibacillus sp. HGF5]
gi|261286093|gb|ACX68064.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
sp. Y412MC10]
gi|328937557|gb|EGG33975.1| ribosomal subunit interface protein [Paenibacillus sp. HGF5]
Length = 188
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 29/205 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--------VRLSVRGGEFGKG 150
++ I+G+ +E+TD +K++V++K+ S L + D V LSV G
Sbjct: 1 MQFTIRGQQIEVTDALKDYVDKKL-------SRLDKYFDAPPTSEGYVTLSVIRG----- 48
Query: 151 PRIRRCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+ EVT+ GVV RAE+ ++ +YASID V ++R++RK K K + + G
Sbjct: 49 --LHTVEVTI--PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKLNRKIKQEGGL 104
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
L + DA+ Q E ++D + +VR K F M P+ V EAI Q+ V H+F
Sbjct: 105 KTLIAENGAAATSQVDAE-QVEYDEDEYE---VVRTKRFTMKPMDVEEAILQMNMVGHNF 160
Query: 270 YGFRNEETGEINIVYKRKAGGYGVI 294
+ F N +T E+N+VYKR G YG+I
Sbjct: 161 FVFSNIDTQEVNVVYKRDDGKYGLI 185
>gi|357056767|ref|ZP_09117796.1| hypothetical protein HMPREF9467_04768 [Clostridium clostridioforme
2_1_49FAA]
gi|355379606|gb|EHG26762.1| hypothetical protein HMPREF9467_04768 [Clostridium clostridioforme
2_1_49FAA]
Length = 176
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 26/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I G+N+E+T +K VE+K+GK L+H EV V LS + ++ EVT+
Sbjct: 5 ITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K + +RAEE + +Y SIDLV II+R++R+ ++K D + F++ + +
Sbjct: 56 VKGN-TIRAEESSSDMYVSIDLVEEIIERQIRRYRKKLIDKKQAAISFSQAFIE---EED 111
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
D ++Q IV+ K F + P EA Q+E + H+FY F N +T ++N
Sbjct: 112 EVQDDEIQ------------IVKTKKFAIKPAIPEEACLQMEMLGHNFYVFLNADTDQVN 159
Query: 282 IVYKRKAGGYGVIIPK 297
+VYKRK G YG+I P+
Sbjct: 160 VVYKRKNGTYGLIEPE 175
>gi|325977640|ref|YP_004287356.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386337161|ref|YP_006033330.1| putative sigma-54 modulation protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|325177568|emb|CBZ47612.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279797|dbj|BAK27371.1| putative sigma-54 modulation protein [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 182
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 112/199 (56%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ H + +D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFHAEQGLDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ ++ + + EE +VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEEGPAVK---VVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G G+I K
Sbjct: 164 VTNVLYRREDGELGLIEAK 182
>gi|350267769|ref|YP_004879076.1| hypothetical protein GYO_3873 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349600656|gb|AEP88444.1| YvyD [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 189
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 29/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + +D D VQ E ED+ +D IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 YLLANGLGSDTDIAVQDEIEDEESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 165 NAETNLTNVVYRRNDGKYGLIEP 187
>gi|296330262|ref|ZP_06872743.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305676133|ref|YP_003867805.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296152530|gb|EFG93398.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305414377|gb|ADM39496.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 189
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 29/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTAALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + +D D VQ E ED+ +D IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 YLLANGLGSDTDIAVQDEIEDEESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 165 NAETNLTNVVYRRNDGKYGLIEP 187
>gi|302875857|ref|YP_003844490.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium cellulovorans 743B]
gi|307689290|ref|ZP_07631736.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium cellulovorans 743B]
gi|302578714|gb|ADL52726.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
cellulovorans 743B]
Length = 180
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 25/196 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GKN+E+T +K VE+K+ K + K+ V LSV +++ EVT+
Sbjct: 5 ITGKNIEVTPALKEAVEKKLSK-LDKYLEKDYTAHVTLSVE-------RKLQVIEVTI-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HGRHMKGFNRLKVREPVTQ 220
K+ ++R EE E++YASIDLV ++ ++RK K K S + ++ ++ L E
Sbjct: 56 LKNVILRGEEATESMYASIDLVIDKLEGQMRKNKTKLSKQKYADSLRFYDALSKGELAAT 115
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
VE ++ IV+ K F + P+ EA+ Q+E + H+F+ F ++ET E+
Sbjct: 116 EVEEESK--------------IVKTKRFAIKPMNAEEAVLQMELLGHNFFVFMDDETSEV 161
Query: 281 NIVYKRKAGGYGVIIP 296
N+VYKRK G +G+I P
Sbjct: 162 NVVYKRKDGNFGLIEP 177
>gi|423520975|ref|ZP_17497448.1| ribosomal subunit interface protein [Bacillus cereus HuA4-10]
gi|401180072|gb|EJQ87235.1| ribosomal subunit interface protein [Bacillus cereus HuA4-10]
Length = 180
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFIHP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E A + + EED+ +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|229032806|ref|ZP_04188762.1| Ribosome-associated factor Y [Bacillus cereus AH1271]
gi|423386676|ref|ZP_17363931.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-2]
gi|423388551|ref|ZP_17365777.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-3]
gi|423399982|ref|ZP_17377155.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-2]
gi|423462033|ref|ZP_17438829.1| ribosomal subunit interface protein [Bacillus cereus BAG5X2-1]
gi|423479325|ref|ZP_17456040.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-1]
gi|423526997|ref|ZP_17503442.1| ribosomal subunit interface protein [Bacillus cereus HuB1-1]
gi|228728479|gb|EEL79499.1| Ribosome-associated factor Y [Bacillus cereus AH1271]
gi|401133888|gb|EJQ41511.1| ribosomal subunit interface protein [Bacillus cereus BAG5X2-1]
gi|401632097|gb|EJS49887.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-2]
gi|401642626|gb|EJS60332.1| ribosomal subunit interface protein [Bacillus cereus BAG1X1-3]
gi|401656609|gb|EJS74124.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-2]
gi|402425629|gb|EJV57775.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-1]
gi|402454160|gb|EJV85953.1| ribosomal subunit interface protein [Bacillus cereus HuB1-1]
Length = 180
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E A + + EED+ +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|312142840|ref|YP_003994286.1| sigma 54 modulation protein/ribosomal protein S30EA [Halanaerobium
hydrogeniformans]
gi|311903491|gb|ADQ13932.1| sigma 54 modulation protein/ribosomal protein S30EA [Halanaerobium
hydrogeniformans]
Length = 196
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 116/202 (57%), Gaps = 13/202 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K++ GKN+++T ++K H EEKV K + K+ + RE ++ +++ E K I E
Sbjct: 1 MKIMTYGKNIDVTPSLKEHAEEKVRK-LQKYFNGAREPLEFNITM---EVEKERHI--VE 54
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT + HG++ RAEE +YASID V ++R+L+K K K +D K + + +E
Sbjct: 55 VTGYV--HGLILRAEESTGDMYASIDGVMDKLERQLKKYKTKINDKLIERKQEYKEEYKE 112
Query: 217 PVTQVVENDADVQSEEE--DDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ + N +++EEE D + +V+ K F M P+ V EA Q++ + HDF+ F N
Sbjct: 113 ERKEQILNKG-MEAEEERIDTEVFEPQVVKTKSFPMKPMNVEEACMQMDLIGHDFFVFYN 171
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
+T E N+VYKR G YG+I P
Sbjct: 172 GDTEETNVVYKRNDGNYGLIEP 193
>gi|398305008|ref|ZP_10508594.1| hypothetical protein BvalD_05984 [Bacillus vallismortis DV1-F-3]
Length = 189
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 29/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMIDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 218 --VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + +D D VQ E ED++ +D IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 YLLANGLGSDTDIAVQDEIEDEDSLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 165 NAETNLTNVVYRRNDGKYGLIEP 187
>gi|409358727|ref|ZP_11237086.1| hypothetical protein Dali7_12724 [Dietzia alimentaria 72]
Length = 233
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 27/223 (12%)
Query: 91 SWDGPLS------SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRG 144
++DGPL+ ++ I+G+N+E+ + + + K+ K + K S ++ DV L
Sbjct: 13 TFDGPLTEDPGIPDAQVTIRGRNVEVPEHFASRINTKLAK-IEKMSPAIQRFDVILL--- 68
Query: 145 GEFGKGPRI----RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-- 198
PR+ +R E+T+ K GV RAE +T YA+++ + ++R++RK + +
Sbjct: 69 --HENNPRLSKVSQRIEITI-KGKSGVARAEAAEDTFYAALESAVAKLERQMRKARTRRK 125
Query: 199 --ESDHGRHMKGFNRLKVREPVTQVV-----ENDADVQSEEEDDNFVDEVIVRMKFFEMP 251
+S H R + DAD S + DD + IVR K +
Sbjct: 126 ISQSGHRRPQSVAEATAELAATAAPAEALDRQGDADSYSGDVDDQLPGQ-IVRRKEHDGT 184
Query: 252 PLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+TV EA+E++E V HDFY FR+ E+G +VY+R A YG++
Sbjct: 185 PMTVDEALEKMELVGHDFYLFRDSESGAATVVYRRHAFDYGLL 227
>gi|229020402|ref|ZP_04177157.1| Ribosome-associated factor Y [Bacillus cereus AH1273]
gi|229026631|ref|ZP_04182973.1| Ribosome-associated factor Y [Bacillus cereus AH1272]
gi|423416923|ref|ZP_17394012.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-1]
gi|228734664|gb|EEL85316.1| Ribosome-associated factor Y [Bacillus cereus AH1272]
gi|228740881|gb|EEL91124.1| Ribosome-associated factor Y [Bacillus cereus AH1273]
gi|401108341|gb|EJQ16272.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-1]
Length = 180
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E A + + EED+ +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|114565806|ref|YP_752960.1| sigma 54 modulation protein/ribosomal protein S30EA [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114336741|gb|ABI67589.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 181
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 116/201 (57%), Gaps = 26/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II+G+N+E+TD +K++ +++ K + K+ V+E V LS+ G + + EV
Sbjct: 1 MKFIIRGRNIEITDALKDYTTKRLSK-LEKYIDDVKEAQVALSIEGED-------HKVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ +G++ R EE ++ +Y+SID+V +++++ K K + S+ G +K
Sbjct: 53 TIPL--NGIILRGEEMSDDMYSSIDMVEEKLEKQIEKYKTRLYRSNRGAGLK-------- 102
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ + + ++ + D E+ + F +VR K F + P+ V EAI Q+ + H F+ F N
Sbjct: 103 KALAEEIKKELD--KGEKIEKFK---VVRSKRFALKPMDVEEAIMQMNLLGHSFFVFFNP 157
Query: 276 ETGEINIVYKRKAGGYGVIIP 296
++ E+N+VYKRK G YG+I P
Sbjct: 158 QSEEVNVVYKRKDGNYGLIEP 178
>gi|374997885|ref|YP_004973384.1| ribosome-associated protein [Desulfosporosinus orientis DSM 765]
gi|357216251|gb|AET70869.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus orientis
DSM 765]
Length = 176
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GK++ELTD +K +V ++VGK + K+S +V V L V R EVT
Sbjct: 5 IRGKHIELTDALKEYVMKRVGK-LAKYSDEFMDVQVTLLVERDR-------HRVEVT--A 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G++ R EE+ E +Y+SID+V ++R++ K R ++ + +
Sbjct: 55 PLNGIILRGEEETEDMYSSIDMVVEKLERQIDKY---------------RTRINKRMRSK 99
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
V D D + E + E IVR K F P++V EAI Q+ + H F+ F N E+ E+N
Sbjct: 100 VLKDHDPKQPAEGHEELREEIVRNKKFSAKPMSVQEAIMQMNLIGHSFFVFTNAESQEMN 159
Query: 282 IVYKRKAGGYGVIIPK 297
+VY R G YG++ P+
Sbjct: 160 VVYVRNNGDYGLLQPQ 175
>gi|315658894|ref|ZP_07911761.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
M23590]
gi|315496018|gb|EFU84346.1| ribosomal subunit interface protein [Staphylococcus lugdunensis
M23590]
Length = 190
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 105/206 (50%), Gaps = 31/206 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYANSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNR 211
EVT+ K+ +RAEE + +YA+IDLV+ ++R++RK K K DHG
Sbjct: 54 IEVTI-PLKNVTLRAEERHDDLYAAIDLVNDKLERQVRKYKTRVNRKNRDHGGQEVFVAE 112
Query: 212 LKVREPV---TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
+ P +V ND+D++ I+R K F + P+ EA+ Q+ + HD
Sbjct: 113 VAEATPEPSELEVETNDSDIE------------IIRSKHFSLKPMDSEEAVLQMNLLGHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVI 294
F+ F + ET +IVY+RK G YG+I
Sbjct: 161 FFVFADRETEGTSIVYRRKDGKYGLI 186
>gi|153956215|ref|YP_001396980.1| ribosome-associated protein [Clostridium kluyveri DSM 555]
gi|219856540|ref|YP_002473662.1| hypothetical protein CKR_3197 [Clostridium kluyveri NBRC 12016]
gi|146349073|gb|EDK35609.1| Predicted ribosome-associated protein [Clostridium kluyveri DSM
555]
gi|219570264|dbj|BAH08248.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 175
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 29/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+ LTD +KN V +K+ K + K+ + E V LSV+ +R EV
Sbjct: 1 MKITVNGKNIVLTDALKNAVRKKLSK-IDKYFNPDVEAHVTLSVQKNR-------QRIEV 52
Query: 159 TL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
T+ F GV+ R EE+ + +YASIDLV ++ ++RK K K +K N +R
Sbjct: 53 TIPFG---GVILRGEEENDDMYASIDLVLDKLEGQIRKQKTK------LLKRNNSESLR- 102
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
Q + ++ + ++E IV+ K F + P++ EA+ Q+E + H F+ +R+ E
Sbjct: 103 --FQFIPDEKETDNQEHK-------IVKTKRFAVKPMSSEEAVLQMELLGHSFFVYRDAE 153
Query: 277 TGEINIVYKRKAGGYGVIIP 296
G++N++YKR+ G YG+I P
Sbjct: 154 QGDVNVIYKRRDGNYGLIEP 173
>gi|254555777|ref|YP_003062194.1| ribosomal protein S30EA [Lactobacillus plantarum JDM1]
gi|300767560|ref|ZP_07077470.1| ribosomal subunit interface protein [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308179752|ref|YP_003923880.1| ribosomal protein S30EA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380031728|ref|YP_004888719.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum WCFS1]
gi|392947893|ref|ZP_10313514.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
pentosus KCA1]
gi|418274367|ref|ZP_12889865.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum subsp. plantarum NC8]
gi|448820324|ref|YP_007413486.1| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum ZJ316]
gi|254044704|gb|ACT61497.1| ribosomal protein S30EA [Lactobacillus plantarum JDM1]
gi|300494545|gb|EFK29703.1| ribosomal subunit interface protein [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045243|gb|ADN97786.1| ribosomal protein S30EA [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|339637512|emb|CCC16444.1| ribosomal protein S30EA [Lactobacillus pentosus IG1]
gi|342240971|emb|CCC78205.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum WCFS1]
gi|376009933|gb|EHS83259.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum subsp. plantarum NC8]
gi|392436868|gb|EIW14771.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
pentosus KCA1]
gi|448273821|gb|AGE38340.1| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
plantarum ZJ316]
Length = 188
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 23/196 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRCEV 158
I+G+N+E+T ++++V+++VGK + VD V L V + K EV
Sbjct: 6 IRGENIEVTQAIRDYVQKRVGKL---QKYFDNNVDSIAHVNLKVHPDKTAK------VEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KG+ +
Sbjct: 57 TI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKAIDFAATD 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V D D Q ++ D +VR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 115 ETVAAADND-QDDKLD-------VVRTKRVALKPMDNEEAILQMDMLGHDFFIYEDAETD 166
Query: 279 EINIVYKRKAGGYGVI 294
INIVY+R G YG+I
Sbjct: 167 AINIVYRRNDGRYGLI 182
>gi|410667008|ref|YP_006919379.1| ribosomal subunit interface protein YfiA [Thermacetogenium phaeum
DSM 12270]
gi|409104755|gb|AFV10880.1| ribosomal subunit interface protein YfiA [Thermacetogenium phaeum
DSM 12270]
Length = 177
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+ +TD +K+++E+K+ K + ++ ++E V +S G F EV
Sbjct: 1 MKIAIRGKNVAVTDGLKSYLEKKLTK-LTRYFDSIQEAQVAVSTVGEGFA-------VEV 52
Query: 159 TLFTKKHGVVRAEE-DAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ ++R EE E + ++DLV +++++ K + K + F +++
Sbjct: 53 TIPLNGGMILRGEEVSRENFFEAVDLVVEKLEKQIHKQRTK------LYRKFRNQGLKDL 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + EN+ + EE VIVR K F M P+ V EA+ Q+ + HDF+ F N ET
Sbjct: 107 IASMGENE---KREEP-------VIVRTKRFAMKPMAVDEAVLQMNLLGHDFFVFTNSET 156
Query: 278 GEINIVYKRKAGGYGVIIPK 297
G++N++Y+RK G G+I P+
Sbjct: 157 GQVNVIYRRKDGNLGLIEPE 176
>gi|420195447|ref|ZP_14701239.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM021]
gi|394263242|gb|EJE07981.1| ribosomal subunit interface protein [Staphylococcus epidermidis
NIHLM021]
Length = 189
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N +D ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHSDDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>gi|116492230|ref|YP_803965.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus pentosaceus ATCC 25745]
gi|421895163|ref|ZP_16325638.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus pentosaceus IE-3]
gi|116102380|gb|ABJ67523.1| SSU ribosomal protein S30P [Pediococcus pentosaceus ATCC 25745]
gi|385271932|emb|CCG91010.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus pentosaceus IE-3]
Length = 184
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 109/193 (56%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++++VE+++GK + V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKRIGKIEKYFEQGANPKAHVNLKVYQDKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV+ ++R+LRK K K + R G+ +++ P +
Sbjct: 59 PLPYLVLRAEETSPDLYASVDLVTDKLERQLRKYKTKINRKSRET-GYKGVEI--PSGDI 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
VEN EEE F IVR K + P+ EAI Q++ + H+F+ + + E+G ++
Sbjct: 116 VEN------EEEASQFD---IVRTKQVSLKPMGSEEAILQMDMLGHNFFIYEDAESGSVD 166
Query: 282 IVYKRKAGGYGVI 294
IVY+R+ G YG+I
Sbjct: 167 IVYRRRDGRYGLI 179
>gi|344997091|ref|YP_004799434.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965310|gb|AEM74457.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor lactoaceticus 6A]
Length = 181
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 108/200 (54%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--IEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + + + +
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAKDAESLRYMTFELE 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + + + I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 111 EPEKEAGEENGEFR----------IAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDT 160
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++N+VYKR G YG+I P+
Sbjct: 161 DKVNVVYKRNDGAYGLIEPE 180
>gi|312792715|ref|YP_004025638.1| sigma 54 modulation protein/ribosomal protein s30ea
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179855|gb|ADQ40025.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 181
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 108/200 (54%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--IEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + + + +
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAKDAESLRYMTFELE 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + + + I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 111 EPEKEGQEENGEFR----------IAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDT 160
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++N+VYKR G YG+I P+
Sbjct: 161 DKVNVVYKRNDGAYGLIEPE 180
>gi|15923742|ref|NP_371276.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15926429|ref|NP_373962.1| hypothetical protein SA0707 [Staphylococcus aureus subsp. aureus
N315]
gi|21282443|ref|NP_645531.1| hypothetical protein MW0714 [Staphylococcus aureus subsp. aureus
MW2]
gi|49483009|ref|YP_040233.1| S30EA family ribosomal protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49485624|ref|YP_042845.1| S30EA family ribosomal protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|82750456|ref|YP_416197.1| hypothetical protein SAB0704 [Staphylococcus aureus RF122]
gi|87160033|ref|YP_493439.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194530|ref|YP_499325.1| hypothetical protein SAOUHSC_00767 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267212|ref|YP_001246155.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus JH9]
gi|150393261|ref|YP_001315936.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus JH1]
gi|151220933|ref|YP_001331755.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979080|ref|YP_001441339.1| hypothetical protein SAHV_0749 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509020|ref|YP_001574679.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221141230|ref|ZP_03565723.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253731380|ref|ZP_04865545.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253732800|ref|ZP_04866965.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus TCH130]
gi|255005543|ref|ZP_05144144.2| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257424872|ref|ZP_05601299.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427540|ref|ZP_05603939.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257430171|ref|ZP_05606555.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432872|ref|ZP_05609232.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus E1410]
gi|257435776|ref|ZP_05611824.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M876]
gi|257794927|ref|ZP_05643906.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|258418243|ref|ZP_05682508.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258421540|ref|ZP_05684465.1| sigma 54 modulation protein [Staphylococcus aureus A9719]
gi|258423401|ref|ZP_05686292.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
A9635]
gi|258430735|ref|ZP_05688447.1| ribosomal subunit interface protein [Staphylococcus aureus A9299]
gi|258441773|ref|ZP_05691045.1| ribosomal subunit interface protein [Staphylococcus aureus A8115]
gi|258445786|ref|ZP_05693963.1| S30EA family ribosomal protein [Staphylococcus aureus A6300]
gi|258449597|ref|ZP_05697699.1| ribosomal subunit interface protein [Staphylococcus aureus A6224]
gi|258452960|ref|ZP_05700954.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus A5948]
gi|258453997|ref|ZP_05701969.1| ribosomal subunit interface protein [Staphylococcus aureus A5937]
gi|262049536|ref|ZP_06022406.1| hypothetical protein SAD30_0958 [Staphylococcus aureus D30]
gi|262052327|ref|ZP_06024530.1| hypothetical protein SA930_1053 [Staphylococcus aureus 930918-3]
gi|269202372|ref|YP_003281641.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED98]
gi|282894521|ref|ZP_06302750.1| hypothetical protein SGAG_01870 [Staphylococcus aureus A8117]
gi|282903382|ref|ZP_06311273.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus C160]
gi|282905162|ref|ZP_06313019.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908138|ref|ZP_06315969.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282910397|ref|ZP_06318201.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282913592|ref|ZP_06321381.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M899]
gi|282916094|ref|ZP_06323857.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
D139]
gi|282918545|ref|ZP_06326282.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282922049|ref|ZP_06329746.1| sigma-54 modulation protein [Staphylococcus aureus A9765]
gi|282923511|ref|ZP_06331191.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282926618|ref|ZP_06334248.1| sigma-54 modulation protein [Staphylococcus aureus A10102]
gi|283769915|ref|ZP_06342807.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus H19]
gi|283957584|ref|ZP_06375037.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284023773|ref|ZP_06378171.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 132]
gi|293500637|ref|ZP_06666488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293509585|ref|ZP_06668296.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
M809]
gi|293524171|ref|ZP_06670858.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M1015]
gi|294850539|ref|ZP_06791267.1| sigma-54 modulation protein [Staphylococcus aureus A9754]
gi|295406475|ref|ZP_06816281.1| sigma-54 modulation protein [Staphylococcus aureus A8819]
gi|295427330|ref|ZP_06819965.1| hypothetical protein SIAG_01865 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296275161|ref|ZP_06857668.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MR1]
gi|297208521|ref|ZP_06924950.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297245201|ref|ZP_06929075.1| sigma-54 modulation protein [Staphylococcus aureus A8796]
gi|297590316|ref|ZP_06948955.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MN8]
gi|300912613|ref|ZP_07130056.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381627|ref|ZP_07364277.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014040|ref|YP_005290276.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VC40]
gi|379020523|ref|YP_005297185.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M013]
gi|384547034|ref|YP_005736287.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED133]
gi|384549612|ref|YP_005738864.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|384861420|ref|YP_005744140.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384864077|ref|YP_005749436.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|384868316|ref|YP_005748512.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH60]
gi|384869338|ref|YP_005752052.1| hypothetical protein SAT0131_00824 [Staphylococcus aureus subsp.
aureus T0131]
gi|385781078|ref|YP_005757249.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 11819-97]
gi|386728518|ref|YP_006194901.1| ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
71193]
gi|386830394|ref|YP_006237048.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387142446|ref|YP_005730839.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus TW20]
gi|387149915|ref|YP_005741479.1| Ribosomal subunit interface protein [Staphylococcus aureus
04-02981]
gi|387602107|ref|YP_005733628.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ST398]
gi|387779887|ref|YP_005754685.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus LGA251]
gi|404478152|ref|YP_006709582.1| S30EA family ribosomal protein [Staphylococcus aureus 08BA02176]
gi|415683578|ref|ZP_11448794.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS00]
gi|415689247|ref|ZP_11452646.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS01]
gi|415693276|ref|ZP_11455109.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS03]
gi|417650470|ref|ZP_12300241.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21189]
gi|417652414|ref|ZP_12302161.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21172]
gi|417655221|ref|ZP_12304935.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21193]
gi|417796152|ref|ZP_12443368.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21305]
gi|417798597|ref|ZP_12445757.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21310]
gi|417802480|ref|ZP_12449538.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21318]
gi|417887200|ref|ZP_12531333.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21195]
gi|417890533|ref|ZP_12534606.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21200]
gi|417900171|ref|ZP_12544066.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21259]
gi|417902346|ref|ZP_12546213.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21266]
gi|417904653|ref|ZP_12548475.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21269]
gi|418280799|ref|ZP_12893624.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21178]
gi|418283225|ref|ZP_12895979.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21202]
gi|418285708|ref|ZP_12898375.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21209]
gi|418308218|ref|ZP_12919861.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21194]
gi|418309511|ref|ZP_12921065.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21331]
gi|418313755|ref|ZP_12925240.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21334]
gi|418315287|ref|ZP_12926751.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21340]
gi|418318377|ref|ZP_12929782.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21232]
gi|418322144|ref|ZP_12933481.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|418423895|ref|ZP_12997037.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS1]
gi|418426872|ref|ZP_12999893.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS2]
gi|418429802|ref|ZP_13002728.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS3a]
gi|418432698|ref|ZP_13005491.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS4]
gi|418436413|ref|ZP_13008223.1| hypothetical protein MQI_01797 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418439310|ref|ZP_13011026.1| hypothetical protein MQK_00708 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418442288|ref|ZP_13013900.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS7]
gi|418445416|ref|ZP_13016902.1| hypothetical protein MQO_02176 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418448355|ref|ZP_13019755.1| hypothetical protein MQQ_02201 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451176|ref|ZP_13022515.1| hypothetical protein MQS_00679 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454198|ref|ZP_13025466.1| hypothetical protein MQU_01628 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457102|ref|ZP_13028312.1| hypothetical protein MQW_01802 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418560594|ref|ZP_13125107.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21252]
gi|418561304|ref|ZP_13125796.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21262]
gi|418565468|ref|ZP_13129872.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21264]
gi|418567893|ref|ZP_13132254.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21272]
gi|418569774|ref|ZP_13134088.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21283]
gi|418574161|ref|ZP_13138338.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21333]
gi|418578651|ref|ZP_13142746.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418581466|ref|ZP_13145547.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595794|ref|ZP_13159389.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21342]
gi|418600605|ref|ZP_13164061.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21343]
gi|418601738|ref|ZP_13165154.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21345]
gi|418639416|ref|ZP_13201663.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|418640889|ref|ZP_13203105.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|418644363|ref|ZP_13206509.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|418647135|ref|ZP_13209214.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|418651026|ref|ZP_13213037.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|418654246|ref|ZP_13216159.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|418656302|ref|ZP_13218116.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|418659159|ref|ZP_13220849.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|418660933|ref|ZP_13222539.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|418872444|ref|ZP_13426783.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|418874773|ref|ZP_13429039.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418877597|ref|ZP_13431836.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418880456|ref|ZP_13434676.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418883382|ref|ZP_13437581.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418886044|ref|ZP_13440194.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418888650|ref|ZP_13442786.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418891394|ref|ZP_13445511.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418894208|ref|ZP_13448309.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418897169|ref|ZP_13451242.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418900139|ref|ZP_13454198.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418903027|ref|ZP_13457068.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418904875|ref|ZP_13458904.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418908545|ref|ZP_13462553.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418913941|ref|ZP_13467913.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418916617|ref|ZP_13470578.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418919624|ref|ZP_13473567.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418922421|ref|ZP_13476338.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418924990|ref|ZP_13478893.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418928075|ref|ZP_13481961.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418930785|ref|ZP_13484633.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418933687|ref|ZP_13487511.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418948877|ref|ZP_13501157.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|418950078|ref|ZP_13502286.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-160]
gi|418952694|ref|ZP_13504710.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|418979253|ref|ZP_13527050.1| Ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
DR10]
gi|418981655|ref|ZP_13529370.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985293|ref|ZP_13532982.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|418987655|ref|ZP_13535328.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418990642|ref|ZP_13538303.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418993465|ref|ZP_13541102.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|419775572|ref|ZP_14301511.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|419784516|ref|ZP_14310280.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|421149524|ref|ZP_15609182.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422744896|ref|ZP_16798851.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|422746645|ref|ZP_16800576.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|424775718|ref|ZP_18202709.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CM05]
gi|424784609|ref|ZP_18211419.1| Ribosomal subunit interface protein [Staphylococcus aureus CN79]
gi|440706804|ref|ZP_20887526.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21282]
gi|440734232|ref|ZP_20913844.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|443636563|ref|ZP_21120663.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21236]
gi|443640222|ref|ZP_21124213.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21196]
gi|448741990|ref|ZP_21723946.1| ribosomal subunit interface protein [Staphylococcus aureus
KT/314250]
gi|448744326|ref|ZP_21726220.1| ribosomal subunit interface protein [Staphylococcus aureus KT/Y21]
gi|81649741|sp|Q6GB78.1|Y717_STAAS RecName: Full=Uncharacterized protein SAS0717
gi|81651525|sp|Q6GIN9.1|Y806_STAAR RecName: Full=Uncharacterized protein SAR0806
gi|81704596|sp|Q7A1G5.1|Y714_STAAW RecName: Full=Uncharacterized protein MW0714
gi|81706023|sp|Q7A6R6.1|Y707_STAAN RecName: Full=Uncharacterized protein SA0707
gi|81781936|sp|Q99VM3.1|Y752_STAAM RecName: Full=Uncharacterized protein SAV0752
gi|122539988|sp|Q2G055.1|Y767_STAA8 RecName: Full=Uncharacterized protein SAOUHSC_00767
gi|123486758|sp|Q2FIN9.1|Y736_STAA3 RecName: Full=Uncharacterized protein SAUSA300_0736
gi|123547686|sp|Q2YSH7.1|Y704_STAAB RecName: Full=Uncharacterized protein SAB0704
gi|13700643|dbj|BAB41940.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246521|dbj|BAB56914.1| putative ribosome-associated protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|21203880|dbj|BAB94579.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49241138|emb|CAG39816.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49244067|emb|CAG42493.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|82655987|emb|CAI80392.1| conserved hypothetical protein [Staphylococcus aureus RF122]
gi|87126007|gb|ABD20521.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202088|gb|ABD29898.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740281|gb|ABQ48579.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Staphylococcus aureus subsp. aureus JH9]
gi|149945713|gb|ABR51649.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus JH1]
gi|150373733|dbj|BAF66993.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721215|dbj|BAF77632.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160367829|gb|ABX28800.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|253724905|gb|EES93634.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253729165|gb|EES97894.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
subsp. aureus TCH130]
gi|257272442|gb|EEV04565.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275733|gb|EEV07206.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257279368|gb|EEV09969.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257282287|gb|EEV12422.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus E1410]
gi|257284967|gb|EEV15086.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M876]
gi|257788899|gb|EEV27239.1| conserved hypothetical protein [Staphylococcus aureus A9781]
gi|257839036|gb|EEV63515.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257842466|gb|EEV66890.1| sigma 54 modulation protein [Staphylococcus aureus A9719]
gi|257846462|gb|EEV70485.1| ribosome-associated inhibitor protein Y [Staphylococcus aureus
A9635]
gi|257849407|gb|EEV73377.1| ribosomal subunit interface protein [Staphylococcus aureus A9299]
gi|257852242|gb|EEV76169.1| ribosomal subunit interface protein [Staphylococcus aureus A8115]
gi|257855362|gb|EEV78300.1| S30EA family ribosomal protein [Staphylococcus aureus A6300]
gi|257857105|gb|EEV80004.1| ribosomal subunit interface protein [Staphylococcus aureus A6224]
gi|257859471|gb|EEV82325.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus A5948]
gi|257863862|gb|EEV86618.1| ribosomal subunit interface protein [Staphylococcus aureus A5937]
gi|259159767|gb|EEW44808.1| hypothetical protein SA930_1053 [Staphylococcus aureus 930918-3]
gi|259162372|gb|EEW46944.1| hypothetical protein SAD30_0958 [Staphylococcus aureus D30]
gi|262074662|gb|ACY10635.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED98]
gi|269940329|emb|CBI48706.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus TW20]
gi|282314379|gb|EFB44769.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C101]
gi|282317679|gb|EFB48051.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
C427]
gi|282320042|gb|EFB50389.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
D139]
gi|282322624|gb|EFB52946.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M899]
gi|282325789|gb|EFB56097.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WBG10049]
gi|282327803|gb|EFB58085.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282331569|gb|EFB61081.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282591511|gb|EFB96583.1| sigma-54 modulation protein [Staphylococcus aureus A10102]
gi|282593707|gb|EFB98699.1| sigma-54 modulation protein [Staphylococcus aureus A9765]
gi|282596337|gb|EFC01298.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus C160]
gi|282763234|gb|EFC03365.1| hypothetical protein SGAG_01870 [Staphylococcus aureus A8117]
gi|283460062|gb|EFC07152.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus H19]
gi|283470045|emb|CAQ49256.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ST398]
gi|283791035|gb|EFC29850.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284999866|dbj|BAI67826.1| hibernation promoting factor [Staphylococcus aureus subsp. aureus]
gi|285816454|gb|ADC36941.1| Ribosomal subunit interface protein [Staphylococcus aureus
04-02981]
gi|290921134|gb|EFD98195.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M1015]
gi|291095642|gb|EFE25903.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291467682|gb|EFF10197.1| sigma-54 modulation protein [Staphylococcus aureus subsp. aureus
M809]
gi|294822618|gb|EFG39059.1| sigma-54 modulation protein [Staphylococcus aureus A9754]
gi|294968620|gb|EFG44643.1| sigma-54 modulation protein [Staphylococcus aureus A8819]
gi|295128718|gb|EFG58349.1| hypothetical protein SIAG_01865 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296886776|gb|EFH25680.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297177872|gb|EFH37121.1| sigma-54 modulation protein [Staphylococcus aureus A8796]
gi|297576615|gb|EFH95330.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MN8]
gi|298694084|gb|ADI97306.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ED133]
gi|300886859|gb|EFK82061.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH70]
gi|302332461|gb|ADL22654.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302750649|gb|ADL64826.1| sigma 54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304339990|gb|EFM05934.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312438821|gb|ADQ77892.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829244|emb|CBX34086.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315129436|gb|EFT85429.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS03]
gi|315194370|gb|EFU24762.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS00]
gi|315196427|gb|EFU26778.1| possible ribosome-associated inhibitor protein Y [Staphylococcus
aureus subsp. aureus CGS01]
gi|320139913|gb|EFW31774.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320141996|gb|EFW33824.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329313473|gb|AEB87886.1| hypothetical protein SAT0131_00824 [Staphylococcus aureus subsp.
aureus T0131]
gi|329723825|gb|EGG60353.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21189]
gi|329724524|gb|EGG61031.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21172]
gi|329729682|gb|EGG66083.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21193]
gi|334270016|gb|EGL88424.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21305]
gi|334274480|gb|EGL92798.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21318]
gi|334275458|gb|EGL93747.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21310]
gi|341842943|gb|EGS84176.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21259]
gi|341843436|gb|EGS84663.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21266]
gi|341846559|gb|EGS87751.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21269]
gi|341854668|gb|EGS95534.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21200]
gi|341858253|gb|EGS99050.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21195]
gi|344176989|emb|CCC87453.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus LGA251]
gi|359829832|gb|AEV77810.1| Ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus M013]
gi|364522067|gb|AEW64817.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 11819-97]
gi|365167370|gb|EHM58835.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21178]
gi|365168012|gb|EHM59371.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21202]
gi|365169269|gb|EHM60522.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21209]
gi|365223753|gb|EHM65028.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VCU006]
gi|365235454|gb|EHM76373.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21334]
gi|365238844|gb|EHM79672.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21331]
gi|365240806|gb|EHM81569.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21194]
gi|365243246|gb|EHM83932.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21232]
gi|365243917|gb|EHM84585.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21340]
gi|371971658|gb|EHO89055.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21252]
gi|371973397|gb|EHO90747.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21264]
gi|371977649|gb|EHO94912.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21262]
gi|371980258|gb|EHO97472.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21333]
gi|371981391|gb|EHO98572.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21272]
gi|371985380|gb|EHP02453.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21283]
gi|374362737|gb|AEZ36842.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VC40]
gi|374393412|gb|EHQ64725.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21343]
gi|374397549|gb|EHQ68758.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21345]
gi|374400402|gb|EHQ71516.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21342]
gi|375016532|gb|EHS10171.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-99]
gi|375017442|gb|EHS11056.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-3]
gi|375020086|gb|EHS13627.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-24]
gi|375025908|gb|EHS19301.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-55]
gi|375026838|gb|EHS20216.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-91]
gi|375030958|gb|EHS24253.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-88]
gi|375034024|gb|EHS27202.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-105]
gi|375036404|gb|EHS29477.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-111]
gi|375039708|gb|EHS32626.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-122]
gi|375367194|gb|EHS71162.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-125]
gi|375370384|gb|EHS74193.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-157]
gi|375376408|gb|EHS79943.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-189]
gi|375377859|gb|EHS81297.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-160]
gi|377696305|gb|EHT20661.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696678|gb|EHT21033.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377698556|gb|EHT22904.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377705221|gb|EHT29529.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377707135|gb|EHT31429.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377707475|gb|EHT31768.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377711693|gb|EHT35922.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377716048|gb|EHT40233.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377716652|gb|EHT40834.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377719443|gb|EHT43613.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377722764|gb|EHT46889.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377727342|gb|EHT51449.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377732351|gb|EHT56402.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377732894|gb|EHT56944.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377735744|gb|EHT59774.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377737987|gb|EHT61996.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377742042|gb|EHT66027.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377746285|gb|EHT70256.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377746624|gb|EHT70594.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|377751122|gb|EHT75056.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377754160|gb|EHT78069.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377755884|gb|EHT79782.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|377757443|gb|EHT81331.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377761948|gb|EHT85817.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377766415|gb|EHT90248.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377767149|gb|EHT90962.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377771467|gb|EHT95221.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|377772113|gb|EHT95866.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|379992932|gb|EIA14381.1| Ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
DR10]
gi|383363960|gb|EID41285.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970795|gb|EID86888.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CO-23]
gi|384229811|gb|AFH69058.1| Ribosome-associated factor Y [Staphylococcus aureus subsp. aureus
71193]
gi|385195786|emb|CCG15395.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387720233|gb|EIK08146.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS3a]
gi|387720484|gb|EIK08394.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS2]
gi|387722258|gb|EIK10083.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS1]
gi|387726882|gb|EIK14422.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS4]
gi|387729083|gb|EIK16549.1| hypothetical protein MQI_01797 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387731391|gb|EIK18699.1| hypothetical protein MQK_00708 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387737590|gb|EIK24655.1| hypothetical protein MQO_02176 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387738823|gb|EIK25840.1| hypothetical protein MQQ_02201 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387739265|gb|EIK26273.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus VRS7]
gi|387746340|gb|EIK33072.1| hypothetical protein MQS_00679 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387747172|gb|EIK33882.1| hypothetical protein MQU_01628 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387748702|gb|EIK35371.1| hypothetical protein MQW_01802 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394330441|gb|EJE56533.1| sigma 54 modulation protein [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|402346793|gb|EJU81869.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus CM05]
gi|404439641|gb|AFR72834.1| putative S30EA family ribosomal protein [Staphylococcus aureus
08BA02176]
gi|408423140|emb|CCJ10551.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408425130|emb|CCJ12517.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408427118|emb|CCJ14481.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408429105|emb|CCJ26270.1| Sigma=54 modulation protein/ribosomal protein S30EA [Staphylococcus
aureus subsp. aureus ST228]
gi|408431093|emb|CCJ18408.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|408433087|emb|CCJ20372.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|408435078|emb|CCJ22338.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|408437063|emb|CCJ24306.1| Uncharacterized protein SAR0806 [Staphylococcus aureus subsp.
aureus ST228]
gi|421957208|gb|EKU09532.1| Ribosomal subunit interface protein [Staphylococcus aureus CN79]
gi|436431260|gb|ELP28613.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436506678|gb|ELP42449.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21282]
gi|443405363|gb|ELS63966.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21196]
gi|443407427|gb|ELS65983.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21236]
gi|445547382|gb|ELY15652.1| ribosomal subunit interface protein [Staphylococcus aureus
KT/314250]
gi|445562329|gb|ELY18505.1| ribosomal subunit interface protein [Staphylococcus aureus KT/Y21]
Length = 190
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>gi|418576818|ref|ZP_13140950.1| putative ribosome-associated protein Y [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379324483|gb|EHY91629.1| putative ribosome-associated protein Y [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 192
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 113/199 (56%), Gaps = 17/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 4 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSAT----KIEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HMKGFNRLKVR 215
T+ K+ +RAEE + +YA IDL+++ ++R++RK K + + R + F L
Sbjct: 59 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 117
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ ++ +ND E E DN ++ I+R K F + P+ EA+ Q++ + HDF+ F +
Sbjct: 118 KEAVEI-QND-----ENEADNEIE--IIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDR 169
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET +IVYKRK G YG+I
Sbjct: 170 ETDGTSIVYKRKDGKYGLI 188
>gi|347520960|ref|YP_004778531.1| hypothetical protein LCGT_0354 [Lactococcus garvieae ATCC 49156]
gi|385832323|ref|YP_005870098.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343179528|dbj|BAK57867.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343181476|dbj|BAK59814.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 185
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 17/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N ELTD+++++VE+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKYNIRGENFELTDSIRSYVEDKVGK-LEKYFNDGHEVTAYVNLKV----YSDKRYKAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVREP 217
T+ K+ +RAE+ A +YA+ID V ++R++RK K + NR K+ P
Sbjct: 57 TM-PAKNVTLRAEDTAADMYAAIDFVEEKLERQIRKYKTR----------VNRKSKINVP 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q ++ E E+ N IVR K + P+ EA+ Q++ + HDFY F + +T
Sbjct: 106 TGQAFGDEFAPLDEAEEVNEDQVKIVRTKHVSLKPMDAEEAVLQMDMLGHDFYIFTDADT 165
Query: 278 GEINIVYKRKAGGYGVI 294
N+VY+R+ G G+I
Sbjct: 166 DSTNVVYRREDGNIGLI 182
>gi|308071083|ref|YP_003872688.1| hypothetical protein PPE_04390 [Paenibacillus polymyxa E681]
gi|305860362|gb|ADM72150.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 186
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEDP 112
Query: 218 VTQV-VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V V D DV+ +E + +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGGVAVAEDEDVELDELE-------VVRTKRFLLKPMDVEEAILQMNMVGHNFFVFSNID 165
Query: 277 TGEINIVYKRKAGGYGVI 294
E+N+VYKR G YG+I
Sbjct: 166 NEEVNVVYKRNDGKYGLI 183
>gi|365924323|ref|ZP_09447086.1| ribosome-associated factor Y [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420265654|ref|ZP_14768189.1| Ribosome-associated factor Y [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394427471|gb|EJF00166.1| Ribosome-associated factor Y [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 181
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 113/199 (56%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+T+ ++++V++K+ K S+ V++++ + +
Sbjct: 2 LKYNIRGENIEVTEAIRSYVQKKLTKLEKYFEDTSNSTAHVNLKVY--------SDKTAK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KGFN V+
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKHKTKINRKSRE-KGFNN-NVQ 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E +ND EE +N D IVR K F + P+ EA+ Q+ + HDF+ + +
Sbjct: 111 E------KNDT-----EETENGFD--IVRSKHFSLKPMDSEEAVLQMNMLGHDFFIYEDA 157
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET +NIVY+RK G YG+I
Sbjct: 158 ETDGVNIVYRRKDGRYGLI 176
>gi|379795223|ref|YP_005325221.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MSHR1132]
gi|356872213|emb|CCE58552.1| putative S30EA family ribosomal protein [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 190
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 110/196 (56%), Gaps = 12/196 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E +
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRKSRD-RGDQEVFVAE-L 113
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ E D +E DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 114 QEMQETPVD--NETYDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETD 169
Query: 279 EINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 170 GTSIVYRRKDGKYGLI 185
>gi|224475893|ref|YP_002633499.1| putative ribosome-associated protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|229462783|sp|P47995.2|Y400_STACT RecName: Full=Uncharacterized protein Sca_0400; AltName: Full=ORF1
gi|222420500|emb|CAL27314.1| putative ribosome-associated protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 188
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+KVGK + +V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGKL---ERYFTNVPNVNAHVKVKTYANSST--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK-------EKESDHGRHMKGFNR 211
T+ +RAEE + +YA IDL+++ ++R++RK K KES+H
Sbjct: 57 TI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKRKESEH--------- 106
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
EP E + + + D+ ++ I+R K F + P+ EA+ Q++ + HDF+
Sbjct: 107 ----EPFPATPETPPETAVDHDKDDEIE--IIRSKQFSLKPMDSEEAVLQMDLLGHDFFI 160
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F + ET +IVY+RK G YG+I
Sbjct: 161 FNDRETDGTSIVYRRKDGKYGLI 183
>gi|222530072|ref|YP_002573954.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Caldicellulosiruptor bescii DSM 6725]
gi|222456919|gb|ACM61181.1| sigma 54 modulation protein/ribosomal protein S30EA
[Caldicellulosiruptor bescii DSM 6725]
Length = 181
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 108/200 (54%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + + + +
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAKDAESLRYMTFELE 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + + + I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 111 EPEKEVQEENSEFR----------IAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDT 160
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++N+VY+R G YG+I P+
Sbjct: 161 DKVNVVYRRNDGAYGLIEPE 180
>gi|163816072|ref|ZP_02207442.1| hypothetical protein COPEUT_02252 [Coprococcus eutactus ATCC 27759]
gi|158448882|gb|EDP25877.1| ribosomal subunit interface protein [Coprococcus eutactus ATCC
27759]
Length = 175
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 25/196 (12%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
II GKN+E+T+ ++N V++K+ K + K+ V SV ++ EVT+
Sbjct: 4 IISGKNIEVTEGLRNAVQDKLSK-LEKYFAADTGAQVTFSVEKDR-------QKIEVTIP 55
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K H ++RAE+ ++ +Y SIDLV +I+R++ K ++K D +++ N V E +
Sbjct: 56 MKGH-IIRAEQVSDDMYVSIDLVVEVIERQVTKHRKKLIDKEQNVAYLNEAFVDEDIEDD 114
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ IVR K F + P+ +A Q++ + H+FY FRN ET E+N
Sbjct: 115 DDIK----------------IVRTKKFAVKPMYPEDACIQMDLLGHNFYVFRNAETDEVN 158
Query: 282 IVYKRKAGGYGVIIPK 297
+VYKRK YG+I P+
Sbjct: 159 VVYKRKGNTYGLIEPE 174
>gi|357038235|ref|ZP_09100033.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum gibsoniae DSM 7213]
gi|355359810|gb|EHG07570.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum gibsoniae DSM 7213]
Length = 175
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K++++G+N+++TD +K++VE++VGK + K +E V L V G + EV
Sbjct: 1 MKVLVRGRNVDVTDALKDYVEKRVGK-LDKFLDGAKEATVILVVEGDA-------HKVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F ++R EE +Y+SIDL+ +++++ K K K NR +V
Sbjct: 53 TVPFNGM--ILRGEEATGDMYSSIDLIVDKLEKQIEKYKGK----------LNRRRVASE 100
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E + +++DD +V+ K F + P+ V EA+ Q+ + H F+ F N ET
Sbjct: 101 QKAYAEQP---RFQDDDDGMQ---VVKTKRFAIKPMPVDEAVMQMNLLGHSFFVFSNAET 154
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG+I P
Sbjct: 155 EQVNVVYKRKDGKYGLIEP 173
>gi|418911429|ref|ZP_13465412.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377724807|gb|EHT48922.1| putative binding protein [Staphylococcus aureus subsp. aureus
CIG547]
Length = 190
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 22/201 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS-VRGGEFGKGPRIRRCE 157
++ I G NL +TD ++N++EEK+GK +V + ++ V+ + + E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKMGKL----ERYFNDVPIAVAHVKVKTYSNSAT--KIE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK 213
VT+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 56 VTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQ 114
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F
Sbjct: 115 EMQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ ET +IVY+RK G YG+I
Sbjct: 165 DRETDGTSIVYRRKDGKYGLI 185
>gi|288904719|ref|YP_003429940.1| Ribosome-associated protein Y [Streptococcus gallolyticus UCN34]
gi|288731444|emb|CBI12996.1| Ribosome-associated protein Y [Streptococcus gallolyticus UCN34]
Length = 182
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 111/196 (56%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ H + +D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFHAEQGLDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKYRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ ++ + + EE +VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEEGPVVK---VVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G+I
Sbjct: 164 VTNVLYRREDGELGLI 179
>gi|416842072|ref|ZP_11904807.1| ribosomal subunit interface protein, partial [Staphylococcus aureus
O11]
gi|323438895|gb|EGA96630.1| ribosomal subunit interface protein [Staphylococcus aureus O11]
Length = 186
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>gi|317501258|ref|ZP_07959462.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089995|ref|ZP_08338885.1| hypothetical protein HMPREF1025_02468 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336439038|ref|ZP_08618657.1| hypothetical protein HMPREF0990_01051 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316897325|gb|EFV19392.1| ribosomal subunit interface protein [Lachnospiraceae bacterium
8_1_57FAA]
gi|330402909|gb|EGG82475.1| hypothetical protein HMPREF1025_02468 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336017080|gb|EGN46850.1| hypothetical protein HMPREF0990_01051 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 185
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 36/207 (17%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKN+E+T +K +E+K+GK + ++ E+ V LSV G ++ EVT+
Sbjct: 3 FIISGKNIEVTPGLKEAIEQKLGK-LERYFTPETEIIVTLSVEKGR-------QKIEVTI 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K ++R+E+ + +Y SIDLV +I+R+LRK K K +
Sbjct: 55 -PVKGSIIRSEQTSSDMYVSIDLVEEVIERQLRKYKNKLVAKSQG--------------- 98
Query: 221 VVENDADVQSEEEDDNFVDEV----------IVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
A V S F++ IVR K F + P+ +A Q+E + H F+
Sbjct: 99 --HPTAAVPSGSIKKEFIESDDESSDDDEIRIVRTKKFGIKPMFPEDACIQMELLGHSFF 156
Query: 271 GFRNEETGEINIVYKRKAGGYGVIIPK 297
F N ET E+N+VYKRK G +G+I P+
Sbjct: 157 VFSNAETDEVNVVYKRKDGSFGLIEPE 183
>gi|210623869|ref|ZP_03294104.1| hypothetical protein CLOHIR_02055 [Clostridium hiranonis DSM 13275]
gi|210153295|gb|EEA84301.1| hypothetical protein CLOHIR_02055 [Clostridium hiranonis DSM 13275]
Length = 190
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 25/208 (12%)
Query: 90 MSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGK 149
MS G S +++ + GK+++LTD +K + E+K+ K +L + +V+++V G+
Sbjct: 1 MSAKGE-SFMRVTVTGKHVKLTDGIKGYTEDKLKKL---GKYLDEDTEVKVTVSAGK--- 53
Query: 150 GPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
++ EV + +R EE+ + +Y +IDLV + R++ K K+K
Sbjct: 54 --NRQKVEVMIPNVNGHTIRVEEEQDNLYPAIDLVCDKLSRQIIKYKDK----------- 100
Query: 210 NRLKVREPVTQVVENDADVQSEEEDD---NFVDEVIVRMKFFEMPPLTVSEAIEQLENVD 266
K R P + + + +E D + VI R K F + P+++ EAI Q+ D
Sbjct: 101 --FKTRVPGNFSIRYEGIEELAQELDYEVEEPEVVIERRKKFNLKPMSIEEAILQMNLTD 158
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVI 294
HDFY F++ E+ EI +VYKRK GGYG+I
Sbjct: 159 HDFYMFKDRESFEICLVYKRKEGGYGLI 186
>gi|392304999|emb|CCI71362.1| hypothetical protein PPM_4555 [Paenibacillus polymyxa M1]
Length = 186
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++VE+K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVEKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEDP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V E++D +DE+ +VR K F + P+ V EAI Q+ + H+F+ F N +
Sbjct: 113 A-------GGVAVAEDEDAELDELEVVRTKRFLLKPMDVEEAILQMNMIGHNFFVFANID 165
Query: 277 TGEINIVYKRKAGGYGVI 294
E+N+VYKR G YG+I
Sbjct: 166 NEEVNVVYKRNDGKYGLI 183
>gi|306830722|ref|ZP_07463887.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|306832899|ref|ZP_07466032.1| ribosomal subunit interface protein [Streptococcus bovis ATCC
700338]
gi|336063759|ref|YP_004558618.1| putative sigma-54 modulation protein [Streptococcus pasteurianus
ATCC 43144]
gi|304424974|gb|EFM28107.1| ribosomal subunit interface protein [Streptococcus bovis ATCC
700338]
gi|304427230|gb|EFM30337.1| ribosomal subunit interface protein [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|334281959|dbj|BAK29532.1| putative sigma-54 modulation protein [Streptococcus pasteurianus
ATCC 43144]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 111/196 (56%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ H + +D R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFHAEQGLDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ ++ + + EE +VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEEGPVVK---VVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G+I
Sbjct: 164 VTNVLYRREDGELGLI 179
>gi|310644314|ref|YP_003949073.1| ribosome-associated factor y [Paenibacillus polymyxa SC2]
gi|309249265|gb|ADO58832.1| Ribosome-associated factor Y [Paenibacillus polymyxa SC2]
Length = 186
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 15/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++VE+K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVEKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKHKTKLNRKFRQEGSLKTLFVEDP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
D +E+ED + +VR K F + P+ V EAI Q+ + H+F+ F N +
Sbjct: 113 A------DGVAVAEDEDAELDELEVVRTKRFLLKPMDVEEAILQMNMIGHNFFVFANIDN 166
Query: 278 GEINIVYKRKAGGYGVI 294
E+N+VYKR G YG+I
Sbjct: 167 EEVNVVYKRNDGKYGLI 183
>gi|224166377|ref|XP_002338923.1| predicted protein [Populus trichocarpa]
gi|222873939|gb|EEF11070.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 59/95 (62%), Gaps = 17/95 (17%)
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGPRIR+ EDAE + + KLRKIK+KESDHGRHM
Sbjct: 1 MGKGPRIRK----------------EDAEKSKQVLIWCRQLFN-KLRKIKDKESDHGRHM 43
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEV 241
KGFN+LKVREP++Q VENDAD S+ +DD+ + EV
Sbjct: 44 KGFNKLKVREPMSQEVENDADTVSQRKDDDNLGEV 78
>gi|417980130|ref|ZP_12620811.1| ribosomal subunit interface protein [Lactobacillus casei 12A]
gi|410525357|gb|EKQ00259.1| ribosomal subunit interface protein [Lactobacillus casei 12A]
Length = 185
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 112 ATAP------AEPKPAEDDDNLT---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 162
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 163 DTNGTSIVYKRRDGCYGLI 181
>gi|297565851|ref|YP_003684823.1| sigma 54 modulation protein/ribosomal protein S30EA [Meiothermus
silvanus DSM 9946]
gi|296850300|gb|ADH63315.1| sigma 54 modulation protein/ribosomal protein S30EA [Meiothermus
silvanus DSM 9946]
Length = 184
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 106/196 (54%), Gaps = 25/196 (12%)
Query: 105 GKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTL 160
G+N+E+T+ +KN++++K+ + L + + V LS+ + PRI + E+ +
Sbjct: 8 GRNVEITEALKNYLDKKLARLDRLAEGMGIMDARVVLSM-----AQSPRIGDRAKAEIQV 62
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K G+VR EE +YA+ID + ++ +L++ KE RH F + PV
Sbjct: 63 NLPK-GLVRVEESDADMYAAIDRMVDRLEVQLKRYKE------RH---FQEYRNHVPVMA 112
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+ + ++EE IVR K F M P++ +A ++E + HDF+ FRN ET +I
Sbjct: 113 GIPTPPESETEEGPQ------IVRTKRFAMKPMSPEDAAFEMEALGHDFFVFRNAETEDI 166
Query: 281 NIVYKRKAGGYGVIIP 296
N++Y+R+ G YG+I P
Sbjct: 167 NVIYRRRDGNYGLIEP 182
>gi|375310906|ref|ZP_09776170.1| hypothetical protein WG8_4704 [Paenibacillus sp. Aloe-11]
gi|375077104|gb|EHS55348.1| hypothetical protein WG8_4704 [Paenibacillus sp. Aloe-11]
Length = 184
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKNKTKLNRKFRQKGSLKTLFVEDP 112
Query: 218 V-TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ VV DAD+ E +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGSVVVAEDADLDELE---------VVRTKRFLLKPMDVEEAILQMNMVGHNFFVFANID 163
Query: 277 TGEINIVYKRKAGGYGVI 294
E+++VYKR G YG+I
Sbjct: 164 NEEVSVVYKRNDGKYGLI 181
>gi|334881788|emb|CCB82694.1| ribosomal protein S30EA [Lactobacillus pentosus MP-10]
Length = 188
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 23/196 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRCEV 158
++G+N+E+T ++++V+++VGK + VD V L V + K EV
Sbjct: 6 VRGENIEVTQAIRDYVQKRVGKL---QKYFDNNVDSIAHVNLKVHPDKTAK------VEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KG+ +
Sbjct: 57 TI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKAIDFAATD 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V D D Q ++ D +VR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 115 ETVAAADND-QDDKLD-------VVRTKRVALKPMDNEEAILQMDMLGHDFFIYEDAETD 166
Query: 279 EINIVYKRKAGGYGVI 294
INIVY+R G YG+I
Sbjct: 167 AINIVYRRNDGRYGLI 182
>gi|171778163|ref|ZP_02919420.1| hypothetical protein STRINF_00256 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704780|ref|YP_005203239.1| ribosomal subunit interface protein [Streptococcus infantarius
subsp. infantarius CJ18]
gi|171283145|gb|EDT48569.1| ribosomal subunit interface protein [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|374681479|gb|AEZ61768.1| ribosomal subunit interface protein [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 182
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 114/203 (56%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++N+VE K+GK + K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSVRGENIEVTDAIRNYVESKLGK-IEKYFNAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVNSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KVPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+Q+ ++ + + VDE +VR K + P+ + EA+ Q++ + HDF+ + +
Sbjct: 107 SQIFTSEFEAEP-------VDEGPAVNVVRTKHVSLKPMDLDEALLQMDLLGHDFFIYTD 159
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E G NI+Y+R+ G G+I K
Sbjct: 160 AEDGVTNILYRREDGELGLIEAK 182
>gi|402574865|ref|YP_006624208.1| ribosome-associated protein [Desulfosporosinus meridiei DSM 13257]
gi|402256062|gb|AFQ46337.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus meridiei
DSM 13257]
Length = 175
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 108/196 (55%), Gaps = 27/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GK++ELTD +K +V ++VGK + K+S +V V L V R EVT
Sbjct: 5 IRGKHIELTDALKEYVMKRVGK-LAKYSDEFMDVQVTLLVERDR-------HRVEVTALL 56
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G++ R EE+ E +Y+SID+V ++R++ K + + + R M+ T+V
Sbjct: 57 --NGIILRGEEETEDMYSSIDMVVEKLERQIDKYRTRIN---RRMR-----------TKV 100
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+++ QS ++ E IVR K F P++V EAI Q+ V H F+ F N E+ E+N
Sbjct: 101 LKDHDPKQSTAAEEP--REEIVRHKKFSAKPMSVEEAIMQMNLVGHSFFVFTNSESQEMN 158
Query: 282 IVYKRKAGGYGVIIPK 297
+VY R G YG++ P+
Sbjct: 159 VVYLRNNGDYGLLQPQ 174
>gi|295395809|ref|ZP_06805997.1| S30AE family protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971344|gb|EFG47231.1| S30AE family protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 230
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 37/223 (16%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIR-- 154
S V ++++G+N+ L+++ ++HVE+KV K +R V+V L+ P +R
Sbjct: 11 SIVDIVVKGRNVTLSESFRSHVEDKVSKVEQLAPRALR-VEVVLT-------HDPNVRQP 62
Query: 155 ----RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE--SDHGRHMKG 208
R E+T+ K V+RAE A YA++DL + + +LR+ ++++ S G+H
Sbjct: 63 ENTERIEITVIAK-GPVLRAEATASDKYAALDLAWAKLLERLRRARDRQKISRQGKHRSA 121
Query: 209 -----FNRLKVREPVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFFEMP 251
++V +PV EN+ D + E + +D+ V++R K F
Sbjct: 122 STAEVLASMEVVDPVIPS-ENEKDEKRETPQN--IDQTGGRVPSEGDSPVVLREKTFAAT 178
Query: 252 PLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+ + EAI ++E V HDFY F +E + + ++VYKR+ YGVI
Sbjct: 179 PIALDEAINRMEMVGHDFYLFIDEASTKPSVVYKRRGWSYGVI 221
>gi|158321508|ref|YP_001514015.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
oremlandii OhILAs]
gi|158141707|gb|ABW20019.1| sigma 54 modulation protein/ribosomal protein S30EA [Alkaliphilus
oremlandii OhILAs]
Length = 181
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+I+ G+N+ +TD +++ VE K+ K + K + E LSV+ K +I EV
Sbjct: 1 MKVIVSGRNMNITDALRDTVESKLSK-LDKFFYNELEAQATLSVQ-----KNRQI--IEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG--FNRLKVRE 216
T+ ++R EE + +Y+SID + R+LRK K K + K F + E
Sbjct: 53 TI-PINGSILRVEEATDDMYSSIDNAVDKLTRQLRKQKSKLENRNSKYKTIRFENIPAYE 111
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P E+ N + IVR K F + P+ EA+ Q+E + H+FY F + E
Sbjct: 112 P---------------ENGNASESKIVRTKRFSIKPMNAEEAVLQMELLGHNFYVFLDGE 156
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T E+ +VYKRK G YG+I P
Sbjct: 157 TDEVGVVYKRKDGNYGLIEP 176
>gi|294501811|ref|YP_003565511.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium QM B1551]
gi|295707160|ref|YP_003600235.1| sigma-54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium DSM 319]
gi|384044354|ref|YP_005492371.1| Ribosome-associated factor Y [Bacillus megaterium WSH-002]
gi|294351748|gb|ADE72077.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium QM B1551]
gi|294804819|gb|ADF41885.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
megaterium DSM 319]
gi|345442045|gb|AEN87062.1| Ribosome-associated factor Y [Bacillus megaterium WSH-002]
Length = 183
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 105/195 (53%), Gaps = 18/195 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++ +VE+K+GK +V+V L V + ++ EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKLGKLERYFDETPTADVNVNLKVYNND-------QKIEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE +YA++DLV ++R++RK K K + R KG + +
Sbjct: 57 PMNDLVLRAEETHSDLYAAVDLVLDKLERQIRKHKTKVNRKMRE-KGAEKY-----LFAA 110
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+E++A+V E+D +VR K F + P+ EAI Q+ + H F+ F N ET N
Sbjct: 111 LESEANVAVATEEDELE---LVRTKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNITN 167
Query: 282 IVYKRKAGGYGVIIP 296
+VY+RK G YG+I P
Sbjct: 168 VVYRRKDGRYGLIEP 182
>gi|389576795|ref|ZP_10166823.1| ribosomal subunit interface protein [Eubacterium cellulosolvens 6]
gi|389312280|gb|EIM57213.1| ribosomal subunit interface protein [Eubacterium cellulosolvens 6]
Length = 175
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 31/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+ + I GKN+E+T +K+ V EK+ K +H++ V LSV ++
Sbjct: 1 MNITISGKNIEVTSGLKSAVNEKLAKLERYFTPETHVM----VTLSVEKER-------QK 49
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K ++R+E+ + +Y SIDLV +I+R+LRK K K D + F +
Sbjct: 50 IEVTIPVKGR-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKIIDKKQAAMNFQK---- 104
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+END +++EE I R K FE+ P+ +A Q+E + H+F+ F N
Sbjct: 105 ----AYIENDY-MENEEIK-------IERSKKFEIKPMYPEDACVQMELLGHNFFVFMNA 152
Query: 276 ETGEINIVYKRKAGGYGVIIPKG 298
+T ++N+VYKRK YG+I P+
Sbjct: 153 DTDQVNVVYKRKGNTYGLIEPEN 175
>gi|225572934|ref|ZP_03781689.1| hypothetical protein RUMHYD_01125 [Blautia hydrogenotrophica DSM
10507]
gi|225039704|gb|EEG49950.1| ribosomal subunit interface protein [Blautia hydrogenotrophica DSM
10507]
Length = 175
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
II GKNL +TD ++ VE+K+GK + ++ E+ V LSV ++ EVT+
Sbjct: 3 FIISGKNLTVTDGLRTAVEDKLGK-LERYFTPDTEIIVTLSVEKSR-------QKIEVTI 54
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
K + ++R+E+ + +Y SIDLV +I+R+LRK K K D + F +
Sbjct: 55 PVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKTKIVDKEKAGDHFQK--------- 104
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
A ++ E E+++ V I R K F++ P+ +A Q+E + H+F+ F N ET ++
Sbjct: 105 -----AFIEKEYEEEDEVK--IQRTKKFDIKPMYPEDACVQMELLGHNFFVFCNAETDQV 157
Query: 281 NIVYKRKAGGYGVIIPK 297
N+VYKRK YG+I P+
Sbjct: 158 NVVYKRKGNTYGLIEPE 174
>gi|407478098|ref|YP_006791975.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium antarcticum B7]
gi|407062177|gb|AFS71367.1| Sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium antarcticum B7]
Length = 187
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 110/197 (55%), Gaps = 16/197 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSH--LVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+NL++TD +K++VE+K+ K + + V L V + ++ EVT+
Sbjct: 5 IRGENLDVTDALKDYVEKKLEKLTRYFTTPTEAQTAYVNLKVNNEK-------QKVEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
+ ++RAE+ +YA+IDLV ++R++RK K K + GR +G + E
Sbjct: 58 -PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKINRRGRAKEG----GIGEYFKT 112
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+ +AD EED+ ++ +VR K F + P+ EAI Q++ + H F+ F + ETG
Sbjct: 113 LEGPEADAPVYEEDEAELE--LVRTKRFTLKPMDTEEAILQMDMLGHTFFVFSDAETGNT 170
Query: 281 NIVYKRKAGGYGVIIPK 297
N+VY+RK G YG+I P+
Sbjct: 171 NVVYRRKDGRYGLIEPE 187
>gi|57650091|ref|YP_185689.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus COL]
gi|81694980|sp|Q5HHR8.1|Y815_STAAC RecName: Full=Uncharacterized protein SACOL0815
gi|57284277|gb|AAW36371.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus COL]
Length = 190
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFID 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>gi|78044633|ref|YP_359028.1| ribosomal subunit interface protein [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996748|gb|ABB15647.1| ribosomal subunit interface protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 177
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 105/194 (54%), Gaps = 23/194 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +K + E+++ K + K+ + V V L V G + + EVT+
Sbjct: 5 VRGKNIEVTPALKEYAEKRLAK-LEKYLPKIDVVHVTLLVEGD-------LHKTEVTIPV 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE++ +Y+SIDLV ++R+ +K KEK ++ K +
Sbjct: 57 AGY-LLRGEEESPDMYSSIDLVVDKLERQAKKYKEKLYARFKNNKN------------IA 103
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ ++ E DN + IV+ K F + P++ EA Q+E + H F+ F N +T EIN+
Sbjct: 104 TGEKSAETTPEPDNEIK--IVKSKRFAIKPMSPEEAAMQMELLGHSFFVFTNADTDEINV 161
Query: 283 VYKRKAGGYGVIIP 296
VYKR+ G YG+I P
Sbjct: 162 VYKRRDGKYGLIEP 175
>gi|199597234|ref|ZP_03210665.1| Ribosome-associated protein Y (PSrp-1) [Lactobacillus rhamnosus
HN001]
gi|258507891|ref|YP_003170642.1| ribosomal subunit interface protein [Lactobacillus rhamnosus GG]
gi|258539136|ref|YP_003173635.1| ribosomal subunit interface protein [Lactobacillus rhamnosus Lc
705]
gi|385827573|ref|YP_005865345.1| ribosome-associated protein [Lactobacillus rhamnosus GG]
gi|385834796|ref|YP_005872570.1| sigma 54 modulation protein/S30EA ribosomal protein [Lactobacillus
rhamnosus ATCC 8530]
gi|418070184|ref|ZP_12707459.1| ribosomal subunit interface protein [Lactobacillus rhamnosus R0011]
gi|421769335|ref|ZP_16206042.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP2]
gi|421772382|ref|ZP_16209038.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP3]
gi|199591750|gb|EDY99825.1| Ribosome-associated protein Y (PSrp-1) [Lactobacillus rhamnosus
HN001]
gi|257147818|emb|CAR86791.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus GG]
gi|257150812|emb|CAR89784.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus Lc
705]
gi|259649218|dbj|BAI41380.1| ribosome-associated protein [Lactobacillus rhamnosus GG]
gi|355394287|gb|AER63717.1| sigma 54 modulation protein/S30EA ribosomal protein [Lactobacillus
rhamnosus ATCC 8530]
gi|357539604|gb|EHJ23621.1| ribosomal subunit interface protein [Lactobacillus rhamnosus R0011]
gi|411183950|gb|EKS51085.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP3]
gi|411184466|gb|EKS51598.1| Ribosomal subunit interface protein [Lactobacillus rhamnosus
LRHMDP2]
Length = 185
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 112 SNAP------AEPKPAEDDDNLK---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 162
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 163 DTNGTSIVYKRRDGRYGLI 181
>gi|297622293|ref|YP_003703727.1| ribosomal subunit interface protein [Truepera radiovictrix DSM
17093]
gi|297163473|gb|ADI13184.1| ribosomal subunit interface protein [Truepera radiovictrix DSM
17093]
Length = 190
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 100/203 (49%), Gaps = 28/203 (13%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
G+N+E+TD ++ + EEK+ K H+V D ++ + G + EV L
Sbjct: 8 GRNIEVTDAMRAYAEEKLEKLERFSDHIV---DAKVVMSYATDGNPAMPAKVEVQL-NVP 63
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR--EPVTQVV 222
+G+VRAEE YA+ DLV ++R+LR+ KE+ RL R EP
Sbjct: 64 NGIVRAEESGPDTYAATDLVVEKLERQLRRFKER------------RLAKRNQEPPP--- 108
Query: 223 ENDADVQSEEEDDNFVDE------VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+D DV E DE IVR+K M P++ +A Q+E + H F+ F N E
Sbjct: 109 -SDLDVAPMEGAGVAADESQEREPAIVRVKRHVMRPMSPEDAALQMEALGHAFFVFHNME 167
Query: 277 TGEINIVYKRKAGGYGVIIPKGN 299
T I+++Y+R G YG+I P N
Sbjct: 168 TDTISVLYRRHDGDYGLIEPANN 190
>gi|417896608|ref|ZP_12540554.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21235]
gi|341840574|gb|EGS82077.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus 21235]
Length = 190
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 107/200 (53%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV D DV DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV---DNDVY----DDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>gi|420143744|ref|ZP_14651241.1| Hypothetical protein Y7C_89176 [Lactococcus garvieae IPLA 31405]
gi|391856615|gb|EIT67155.1| Hypothetical protein Y7C_89176 [Lactococcus garvieae IPLA 31405]
Length = 185
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 108/197 (54%), Gaps = 17/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N ELTD+++++VE+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKYNIRGENFELTDSIRSYVEDKVGK-LEKYFNDGHEVTAYVNLKV----YSDKRYKAEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVREP 217
T+ K+ +RAE+ A +YA+ID V ++R++RK K + NR K+ P
Sbjct: 57 TV-PAKNVTLRAEDTAADMYAAIDFVEEKLERQIRKYKTR----------VNRKSKINVP 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q ++ E E+ N IVR K + P+ EA+ Q++ + HDFY F + +T
Sbjct: 106 TGQAFGDEFAPLDEAEEVNEDQVKIVRTKHVSLKPMDAEEAVLQMDMLGHDFYIFTDADT 165
Query: 278 GEINIVYKRKAGGYGVI 294
N+VY+R+ G G+I
Sbjct: 166 DSTNVVYRREDGNIGLI 182
>gi|299535988|ref|ZP_07049307.1| hypothetical protein BFZC1_08185 [Lysinibacillus fusiformis ZC1]
gi|424739935|ref|ZP_18168350.1| hypothetical protein C518_4174 [Lysinibacillus fusiformis ZB2]
gi|298728593|gb|EFI69149.1| hypothetical protein BFZC1_08185 [Lysinibacillus fusiformis ZC1]
gi|422946467|gb|EKU40876.1| hypothetical protein C518_4174 [Lysinibacillus fusiformis ZB2]
Length = 183
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + +V+ +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVENKIDKV---ERYFNEDVNANANVNLKVYN--DKQTKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE +YA++DL+ ++R++RK K K + R +G + TQ
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREG---AGLYFATTQAA 116
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
AD SEEE+ + IVR K F++ P+ EA+ Q+ + HDFY F + E+ NI
Sbjct: 117 ---ADAVSEEEEYS-----IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNI 168
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 169 VYKRKDGKYGLI 180
>gi|116494435|ref|YP_806169.1| ribosome-associated protein [Lactobacillus casei ATCC 334]
gi|191637819|ref|YP_001986985.1| ribosomal subunit interface protein [Lactobacillus casei BL23]
gi|227535602|ref|ZP_03965651.1| ribosome-associated inhibitor protein Y [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239631184|ref|ZP_04674215.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|301065944|ref|YP_003787967.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus casei str.
Zhang]
gi|385819558|ref|YP_005855945.1| ribosome-associated inhibitor protein Y [Lactobacillus casei LC2W]
gi|385822720|ref|YP_005859062.1| ribosome-associated inhibitor protein Y [Lactobacillus casei BD-II]
gi|409996680|ref|YP_006751081.1| hypothetical protein BN194_10150 [Lactobacillus casei W56]
gi|417982992|ref|ZP_12623636.1| ribosomal subunit interface protein [Lactobacillus casei 21/1]
gi|417986219|ref|ZP_12626791.1| ribosomal subunit interface protein [Lactobacillus casei 32G]
gi|417989102|ref|ZP_12629621.1| ribosomal subunit interface protein [Lactobacillus casei A2-362]
gi|417992430|ref|ZP_12632787.1| ribosomal subunit interface protein [Lactobacillus casei CRF28]
gi|417995712|ref|ZP_12636000.1| ribosomal subunit interface protein [Lactobacillus casei M36]
gi|418001540|ref|ZP_12641680.1| ribosomal subunit interface protein [Lactobacillus casei UCD174]
gi|418010340|ref|ZP_12650118.1| ribosomal subunit interface protein [Lactobacillus casei Lc-10]
gi|418013305|ref|ZP_12652949.1| ribosomal subunit interface protein [Lactobacillus casei Lpc-37]
gi|116104585|gb|ABJ69727.1| SSU ribosomal protein S30P [Lactobacillus casei ATCC 334]
gi|190712121|emb|CAQ66127.1| Ribosomal subunit interface protein [Lactobacillus casei BL23]
gi|227186732|gb|EEI66799.1| ribosome-associated inhibitor protein Y [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239525649|gb|EEQ64650.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|300438351|gb|ADK18117.1| Ribosome-associated protein Y (PSrp-1) [Lactobacillus casei str.
Zhang]
gi|327381885|gb|AEA53361.1| Ribosome-associated inhibitor protein Y [Lactobacillus casei LC2W]
gi|327385047|gb|AEA56521.1| Ribosome-associated inhibitor protein Y [Lactobacillus casei BD-II]
gi|406357692|emb|CCK21962.1| Uncharacterized protein SE_0534 [Lactobacillus casei W56]
gi|410526412|gb|EKQ01299.1| ribosomal subunit interface protein [Lactobacillus casei 32G]
gi|410529005|gb|EKQ03837.1| ribosomal subunit interface protein [Lactobacillus casei 21/1]
gi|410533421|gb|EKQ08100.1| ribosomal subunit interface protein [Lactobacillus casei CRF28]
gi|410536869|gb|EKQ11457.1| ribosomal subunit interface protein [Lactobacillus casei M36]
gi|410539694|gb|EKQ14220.1| ribosomal subunit interface protein [Lactobacillus casei A2-362]
gi|410546312|gb|EKQ20571.1| ribosomal subunit interface protein [Lactobacillus casei UCD174]
gi|410554064|gb|EKQ28048.1| ribosomal subunit interface protein [Lactobacillus casei Lc-10]
gi|410555831|gb|EKQ29762.1| ribosomal subunit interface protein [Lactobacillus casei Lpc-37]
Length = 185
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 112 ATAP------AEPKPAEDDDNLT---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 162
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 163 DTNGTSIVYKRRDGRYGLI 181
>gi|237666372|ref|ZP_04526357.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|237657571|gb|EEP55126.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 177
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELT +K V++K+ K + K+ + E LSV+ K +I EV
Sbjct: 1 MKVTVIAKNIELTQALKEIVQKKISK-LEKYFEVEVEAKATLSVQ-----KNRQI--IEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F ++R+EE + +Y SIDLV ++R++RK K + S F L
Sbjct: 53 TIPFN--GAILRSEESTDDMYKSIDLVEDKLERQIRKQKTRLSRKNNGSLKFAAL----- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
ND+ V+S E+D+ +V++K F + P+ EAI Q++ + H+F+ +++ E+
Sbjct: 106 ------NDSKVESNEDDEG----SLVKVKKFGVKPMDSEEAILQMDLLGHNFFVYQDSES 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG++ P
Sbjct: 156 SKVNVVYKRKDGNYGLLEP 174
>gi|284048022|ref|YP_003398361.1| ribosomal subunit interface protein [Acidaminococcus fermentans DSM
20731]
gi|283952243|gb|ADB47046.1| ribosomal subunit interface protein [Acidaminococcus fermentans DSM
20731]
Length = 181
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 24/197 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +K++VE++V + + K V E+ + V G E+T+
Sbjct: 5 VRGKNIEVTQALKDYVEKRV-QTITKQFKTVGEITAVMRVEKGN-------HTVEITV-- 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREPVTQ 220
G+V RA+E ++ +YASID I+R++ K K R MK ++ K P
Sbjct: 55 PASGIVLRAQETSDNMYASIDQCVEKIERQIHKYK------TRLMKRKYSNFKDAAPAP- 107
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+ E+ +V EE F + R K + M P+ V EAI Q+ ++HDF+ F N ET +I
Sbjct: 108 LPEDSEEV--PEETGEFT---VARTKNYAMRPMGVQEAIMQMNMLNHDFFVFFNAETEKI 162
Query: 281 NIVYKRKAGGYGVIIPK 297
IVY+RK+G YG+I P+
Sbjct: 163 AIVYRRKSGDYGLINPE 179
>gi|255659159|ref|ZP_05404568.1| ribosomal subunit interface protein [Mitsuokella multacida DSM
20544]
gi|260848610|gb|EEX68617.1| ribosomal subunit interface protein [Mitsuokella multacida DSM
20544]
Length = 181
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 108/192 (56%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +++ +VE++VGK V K+ V ++ V L+V KG I EVT+
Sbjct: 6 VRGKNIEITPSLREYVEKRVGK-VTKYFDSVGDIKVLLTV-----SKGRHI--VEVTVPI 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++R EE +Y SIDLV ++R++ K K K + RL+ + T+ +
Sbjct: 58 PGGILLRGEESTMDMYTSIDLVVEKLERQIHKQKTKLA---------RRLRSGQFKTEEL 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ +E D + +V+ K F + P+ V EAI ++ ++H+F+ FR+ ET +N+
Sbjct: 109 KSSPMPDVHDESDTYK---VVKTKHFIVKPMDVQEAIMEMNLLNHNFFVFRDAETEAVNV 165
Query: 283 VYKRKAGGYGVI 294
VY+R G YG+I
Sbjct: 166 VYRRDDGNYGLI 177
>gi|219849180|ref|YP_002463613.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Chloroflexus aggregans DSM 9485]
gi|219543439|gb|ACL25177.1| sigma 54 modulation protein/ribosomal protein S30EA [Chloroflexus
aggregans DSM 9485]
Length = 197
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 111/201 (55%), Gaps = 8/201 (3%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I+ +N ++++ + H+EEK+ K +L + + V+ + + R +
Sbjct: 1 MEFTIKSRNGKISERQREHIEEKLAKL---GRYLNGITSITVEVQHEQQRNVGEVYRVQT 57
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVRE 216
TL + HGV+ RAEE A +YA+ID V ++QR++++ K+K R ++ N L E
Sbjct: 58 TLVAE-HGVILRAEERAADLYAAIDAVQEVLQRQIQRYKDKYWRRSRELRRATNGLTPAE 116
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V + + E + ++R K F + P+ V +AIEQ+E + H F+ F++ E
Sbjct: 117 EVAIAEAETEAMTAPVETEPVAK--VIRTKTFRLRPMFVDDAIEQMELLGHTFFVFQDAE 174
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T +I+++Y+R+ G YGVI+P+
Sbjct: 175 TMQISVLYRRRDGNYGVIVPE 195
>gi|418004631|ref|ZP_12644647.1| ribosomal subunit interface protein [Lactobacillus casei UW1]
gi|410549169|gb|EKQ23344.1| ribosomal subunit interface protein [Lactobacillus casei UW1]
Length = 185
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLPFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 112 ATAP------AEPKPAEDDDNLT---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 162
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 163 DTNGTSIVYKRRDGRYGLI 181
>gi|325291341|ref|YP_004267522.1| 30S ribosomal protein S30P;sigma 54 modulation protein
[Syntrophobotulus glycolicus DSM 8271]
gi|324966742|gb|ADY57521.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Syntrophobotulus glycolicus DSM 8271]
Length = 181
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+II+GK ++TD +K++V ++V K + K S +V+V LSV+ +R EVT
Sbjct: 3 VIIRGKQFKVTDALKDYVIKRVSK-LEKFSDDFTDVNVTLSVQKER-------QRIEVT- 53
Query: 161 FTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREPV 218
+G+ +R EE+ + +Y+SIDLV ++R++ K +++ + +K NR
Sbjct: 54 -APLNGMMIRGEEETDNMYSSIDLVVEKLERQIEKYRQRINKKRSKVLKEQNRQ------ 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E D D++ + IVR+K F P+ V EA+ Q+ + H+F+ F N ET
Sbjct: 107 ----EKDPDLEERDR--------IVRVKKFNYKPMAVEEAVMQMNLIGHNFFVFVNLETE 154
Query: 279 EINIVYKRKAGGYGVIIP 296
+N+VY+RK G YG++ P
Sbjct: 155 TMNVVYRRKDGDYGLLEP 172
>gi|319948919|ref|ZP_08023027.1| hypothetical protein ES5_05987 [Dietzia cinnamea P4]
gi|319437416|gb|EFV92428.1| hypothetical protein ES5_05987 [Dietzia cinnamea P4]
Length = 233
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 25/222 (11%)
Query: 91 SWDGPLSS------VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRG 144
++DGP + ++ I+G+N+E+ D + + K+ K V K + L++ DV L
Sbjct: 13 TFDGPETDDPGTPEAQVTIRGRNVEVPDHFASRINTKLAK-VEKMAPLIQRFDVILL--- 68
Query: 145 GEFGKGPRI----RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES 200
PR+ +R E+T+ K GV RAE +T YA+++ + ++R++RK + +
Sbjct: 69 --HENNPRLAKVSQRVEITV-KGKPGVARAEAAEDTFYAALESAVAKLERQMRKARTRRK 125
Query: 201 -DHGRHMK-------GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPP 252
H H + PV + + V+ ++ D + IVR K + P
Sbjct: 126 ISHSGHRRPQSVAEATAELAADAAPVDALDQQLDGVEYDDGVDASMPGQIVRRKEHDGTP 185
Query: 253 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++V EA+E++E V HDFY FR+ ETG +VY+R A YG+I
Sbjct: 186 MSVDEALEKMELVGHDFYLFRDAETGRATVVYRRHAFDYGLI 227
>gi|15896102|ref|NP_349451.1| ribosome-associated protein [Clostridium acetobutylicum ATCC 824]
gi|337738056|ref|YP_004637503.1| ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
DSM 1731]
gi|384459567|ref|YP_005671987.1| Ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
EA 2018]
gi|15025892|gb|AAK80791.1|AE007782_5 Ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
ATCC 824]
gi|325510256|gb|ADZ21892.1| Ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
EA 2018]
gi|336292052|gb|AEI33186.1| ribosome-associated protein Y (PSrp-1) [Clostridium acetobutylicum
DSM 1731]
Length = 174
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 113/201 (56%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KLI+ GKNLE+T+ ++ VE+++ K + K+ E V LSV K +I EV
Sbjct: 1 MKLIVSGKNLEVTEGLREAVEKQISK-LEKYFKPEVEAHVTLSVE-----KNRQI--VEV 52
Query: 159 TL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
T+ F +GV+ R EE +YASID+V ++R++RK K K R K +
Sbjct: 53 TIPF---NGVILRGEETNNDMYASIDIVGDKLERQVRKQKTK----------LERRKYSD 99
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ +N D EE++ IV+ K F + P++ EA+ ++E + H+F+ F+N +
Sbjct: 100 SLK--FQNIPDYHKEEQEPE-----IVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGD 152
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
+ E+N+VYKRK G YG+I P+
Sbjct: 153 SNEVNVVYKRKDGNYGLIEPE 173
>gi|229551739|ref|ZP_04440464.1| ribosome-associated inhibitor protein Y [Lactobacillus rhamnosus
LMS2-1]
gi|229314870|gb|EEN80843.1| ribosome-associated inhibitor protein Y [Lactobacillus rhamnosus
LMS2-1]
Length = 226
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 47 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 94
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 95 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 152
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 153 SNAP------AEPKPAEDDDNLK---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 203
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 204 DTNGTSIVYKRRDGRYGLI 222
>gi|429767406|ref|ZP_19299605.1| ribosomal subunit interface protein [Clostridium celatum DSM 1785]
gi|429181014|gb|EKY22209.1| ribosomal subunit interface protein [Clostridium celatum DSM 1785]
Length = 175
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + GKN+++T +K VE+K+ K L R D + R + R + EV
Sbjct: 1 MRVTVIGKNIDVTPALKEIVEKKISK-------LDRYFDPEVQARATLTVQKNR-QIFEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ +GV+ R EE + +Y SIDLV + ++R++RK + K FN
Sbjct: 53 TI--PFNGVILRCEESTDDMYKSIDLVETKLERQIRKQRTKLQRRNNESLRFN------- 103
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N ++ SEE++ N IV++K F + P++ EAI Q+E V+H+F+ F++ +T
Sbjct: 104 ------NFDEIASEEDEHN----EIVKIKKFNIKPMSTEEAILQMELVEHNFFVFKDCDT 153
Query: 278 GEINIVYKRKAGGYGVIIP 296
+N++YKRK G YG++ P
Sbjct: 154 DNVNVIYKRKDGNYGLLEP 172
>gi|159900805|ref|YP_001547052.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Herpetosiphon aurantiacus DSM 785]
gi|159893844|gb|ABX06924.1| sigma 54 modulation protein/ribosomal protein S30EA [Herpetosiphon
aurantiacus DSM 785]
Length = 186
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 13/195 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+ +N++L D K ++EK+GK +L D ++ R + TL
Sbjct: 5 IKSRNIKLHDAQKAFIQEKLGKL---ERYLDGINDWKVECRFETLRGSGETYTVQATLLA 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
++RAEE +YA+++ V +QR++R+ KEK G+ + + + P+ +
Sbjct: 62 DHGIILRAEERDRELYAAVEAVHDNLQRQIRRFKEKHYRRGKLRRTAGEI-IAAPLPALP 120
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E DA+ Q+EE I+R K + P+ EAIEQ+E + H F+ FR+ ET +I +
Sbjct: 121 E-DAE-QAEERQ-------IIRAKEVTLRPMFSDEAIEQMELLGHSFFVFRDAETEKIQV 171
Query: 283 VYKRKAGGYGVIIPK 297
VY+R G YG+I+P+
Sbjct: 172 VYRRNDGNYGLIMPR 186
>gi|335048314|ref|ZP_08541334.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 110
str. F0139]
gi|333758114|gb|EGL35672.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 110
str. F0139]
Length = 174
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL GKN+E+TD +K +K K ++++ +++ K +I E
Sbjct: 1 MKLQFIGKNIEITDALKEITAKKFEKL---DKFFSKDIEGKVTYSAV---KNDKI--FEA 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ ++RAEE +Y SID+V ++R++RK K K + ++ K+ EP+
Sbjct: 53 TIYLPNSTILRAEESTNDMYTSIDIVLDNLERQIRKNKTKLQKKYQALETIRFEKIAEPL 112
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE+ IVR+K F++ ++ EAI Q+E ++HDF+ F+N +
Sbjct: 113 ------------EEEESK-----IVRVKNFDVATMSEEEAILQIELLNHDFFIFKNAKDS 155
Query: 279 EINIVYKRKAGGYGVIIP 296
+ N++YKRK G YG+II
Sbjct: 156 KTNVLYKRKDGNYGLIIA 173
>gi|423079071|ref|ZP_17067746.1| ribosomal subunit interface protein [Lactobacillus rhamnosus ATCC
21052]
gi|357548205|gb|EHJ30076.1| ribosomal subunit interface protein [Lactobacillus rhamnosus ATCC
21052]
Length = 226
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++N+VE+++ G +V +H V L V + K
Sbjct: 47 VRGENIEVTEAIRNYVEKRISKLNKFFGGSVTATAH------VNLKVYPDKTAK------ 94
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 95 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 152
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E+DDN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 153 SNAP------AEPKPAEDDDNLK---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 203
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 204 DTNGTSIVYKRRDGRYGLI 222
>gi|225387182|ref|ZP_03756946.1| hypothetical protein CLOSTASPAR_00934 [Clostridium asparagiforme
DSM 15981]
gi|225046730|gb|EEG56976.1| hypothetical protein CLOSTASPAR_00934 [Clostridium asparagiforme
DSM 15981]
Length = 176
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFGKGPRIRRCE 157
++ I G+N+E+T +K VE+K+GK L+H EV V LS + ++ E
Sbjct: 1 MRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-------QKIE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K + +RAEE + +Y SIDLV +I+R++R+ ++K D + F++ + E
Sbjct: 52 VTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLIDKKQAALSFSQAFIDEE 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ ++ IV+ K F + P EA Q+E + H+FY F N +T
Sbjct: 111 EDEQEDDIR---------------IVKTKKFAIKPTIPEEACLQMEMLGHNFYVFLNSDT 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG+I P
Sbjct: 156 DQVNVVYKRKNGTYGLIEP 174
>gi|363890325|ref|ZP_09317663.1| hypothetical protein HMPREF9628_00426 [Eubacteriaceae bacterium
CM5]
gi|363891272|ref|ZP_09318451.1| ribosomal subunit interface protein [Eubacteriaceae bacterium CM2]
gi|363893544|ref|ZP_09320642.1| hypothetical protein HMPREF9629_00156 [Eubacteriaceae bacterium
ACC19a]
gi|402837969|ref|ZP_10886484.1| ribosomal subunit interface protein [Eubacteriaceae bacterium
OBRC8]
gi|361963848|gb|EHL16914.1| hypothetical protein HMPREF9629_00156 [Eubacteriaceae bacterium
ACC19a]
gi|361965329|gb|EHL18311.1| ribosomal subunit interface protein [Eubacteriaceae bacterium CM2]
gi|361965769|gb|EHL18740.1| hypothetical protein HMPREF9628_00426 [Eubacteriaceae bacterium
CM5]
gi|402274400|gb|EJU23584.1| ribosomal subunit interface protein [Eubacteriaceae bacterium
OBRC8]
Length = 173
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC-E 157
+ +I+ GK + L+ K+ +E K+ S L + D + VR K + C E
Sbjct: 1 MNIILSGKQINLSQKQKDTIETKL-------SRLEKYFDKDMIVRATASHKKDK--SCVE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K V+RAE +Y ++D V S + R+LRK K K + G F +
Sbjct: 52 VTIPVNK-SVIRAEATDYDMYCAVDEVVSKLARQLRKYKTKLKNRGTETIRFENI----- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+D+ V +EEE + IVR K F+ P++ EA Q+E + HDF+ F N +T
Sbjct: 106 ------DDSSVSNEEE------QKIVRRKKFDFLPMSEEEACLQMEMIGHDFFVFVNADT 153
Query: 278 GEINIVYKRKAGGYGVIIP 296
+N++YKRK G YG+I P
Sbjct: 154 DSVNVLYKRKDGHYGIIEP 172
>gi|312126883|ref|YP_003991757.1| ribosomal subunit interface protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311776902|gb|ADQ06388.1| ribosomal subunit interface protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 181
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 109/200 (54%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ II GKN+E+TD +K +E+K+ K + ++ L +V V LSV K I EV
Sbjct: 1 MNFIISGKNIEVTDALKERIEKKLSK-LERYIKLNTDVHVTLSVE-----KISHI--VEV 52
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ HG ++RAEE + +Y++IDLV ++R++RK K K + + + +
Sbjct: 53 TI--PFHGMILRAEERSNDMYSAIDLVVDTLERQIRKFKTKIAKRAKDAESLRYMTF--D 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + + + E I + K F + P++V EAI Q+ + H+F+ F N++T
Sbjct: 109 IEEPEKEATEENGEFR--------IAKTKRFPIKPMSVEEAILQMNLLGHNFFVFLNQDT 160
Query: 278 GEINIVYKRKAGGYGVIIPK 297
++N+VY+R G YG+I P+
Sbjct: 161 DKVNVVYRRNDGAYGLIEPE 180
>gi|90962163|ref|YP_536079.1| ribosome-associated factor Y [Lactobacillus salivarius UCC118]
gi|90821357|gb|ABD99996.1| Ribosome-associated factor Y [Lactobacillus salivarius UCC118]
Length = 184
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 20/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K+ ++G+N+E+T ++ +VE+++ K + V L V + K E
Sbjct: 2 LKINVRGENIEVTGAIREYVEKRLAKLEKFFDNTADSTAHVNLKVYSDKTAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + P
Sbjct: 56 VTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGFKNFEF-AP 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V AD + E ED F IVR K + P+ EA+ Q++ + HDF+ + + E
Sbjct: 113 V-------ADEKEEVEDKKFE---IVRTKRLSLKPMDSEEAVLQMDMLGHDFFIYEDAEN 162
Query: 278 GEINIVYKRKAGGYGVI 294
G I IVY+R+ G YG+I
Sbjct: 163 GGIYIVYRRRDGRYGLI 179
>gi|397904226|ref|ZP_10505147.1| Ribosomal subunit interface protein [Caloramator australicus RC3]
gi|343178973|emb|CCC58046.1| Ribosomal subunit interface protein [Caloramator australicus RC3]
Length = 177
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 31/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K +I GKN+ LTD +K+ VE+K+GK + K+ +E V LSV+ K +I EV
Sbjct: 1 MKFMITGKNIVLTDALKDVVEKKLGK-LEKYFSPEQEAHVTLSVQ-----KNRQI--IEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMKGFNRLKV 214
T+ F ++R EE + +Y SID V I+R++ K K +K +G +K + +
Sbjct: 53 TIPFNGM--ILRGEESSGDMYTSIDNVVEKIERQIIKHKTKLQKRVHNGETLKFLDIPEY 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
R D +EE IV+ K F + P+ V EAI ++E + H+F+ FRN
Sbjct: 111 R-----------DYDEDEEGK------IVKKKRFSVKPMDVEEAILEMELLGHNFFVFRN 153
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
T E+N+VYKRK G YG+I P+
Sbjct: 154 ANTEEVNVVYKRKDGNYGIIEPE 176
>gi|357236409|ref|ZP_09123752.1| putative Ribosome-associated factor Y [Streptococcus criceti HS-6]
gi|356884391|gb|EHI74591.1| putative Ribosome-associated factor Y [Streptococcus criceti HS-6]
Length = 182
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 110/199 (55%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+ K + K+ + +E++ +++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRNYVESKLAK-IEKYFNQSQELNAKVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLVS I+R++RK K K + R + E V
Sbjct: 57 TIPVGSI-TLRAEDVSQDLYGSIDLVSDKIERQIRKNKTKIAKKHREKVATGEVFSAEFV 115
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ VE + + IVR K ++ P+ EAI Q++ + HDF+ + + E G
Sbjct: 116 AEAVEEVPEAK------------IVRTKNIDLKPMDAEEAILQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G +G+I K
Sbjct: 164 TTNVIYRREDGDFGLIEAK 182
>gi|417998648|ref|ZP_12638864.1| ribosomal subunit interface protein [Lactobacillus casei T71499]
gi|410540489|gb|EKQ15002.1| ribosomal subunit interface protein [Lactobacillus casei T71499]
Length = 185
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 38/203 (18%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++ +VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRRYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDI- 110
Query: 216 EPVTQVVENDADVQSE----EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
DA +E E+DDN +VR K + P+ EAI Q++ + H+F+
Sbjct: 111 ---------DATAPAEPKPAEDDDNLT---VVRTKRVSLKPMDSQEAILQMDMLGHNFFI 158
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F + +T +IVYKR+ G YG+I
Sbjct: 159 FEDADTNGTSIVYKRRDGRYGLI 181
>gi|427414377|ref|ZP_18904567.1| ribosomal subunit interface protein [Veillonella ratti
ACS-216-V-Col6b]
gi|425714753|gb|EKU77756.1| ribosomal subunit interface protein [Veillonella ratti
ACS-216-V-Col6b]
Length = 176
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 102/200 (51%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKNLE+T ++ ++E++V K L R D V+ R E+
Sbjct: 1 MKVTVRGKNLEVTAALREYLEKRVDK-------LARYFDAPFDVQAV-LSVEKENRVVEL 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T F + G+V R +YASIDLV I R++ K K + + + GF +P
Sbjct: 53 TCFVE--GIVLRGVASNTDMYASIDLVVDKIVRQIHKYKTRLARRFKKEAGF------KP 104
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V E VQ EE +VR K F + P++V EAI Q+ V HDF+ F N ET
Sbjct: 105 DAYVPE--VPVQEEEIS-------VVRRKHFAIRPMSVEEAIMQMNLVGHDFFMFYNAET 155
Query: 278 GEINIVYKRKAGGYGVIIPK 297
+N+VY+RK G YG+I P+
Sbjct: 156 EVMNVVYRRKNGSYGLIEPE 175
>gi|311031924|ref|ZP_07710014.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus sp.
m3-13]
Length = 186
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 27/203 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T ++++VE K+GK + ++ S E V L V + ++
Sbjct: 1 MKYNVRGENIEVTPAIRDYVENKIGK-IERYFDSTDNAECKVNLKVYNNQ-------QKI 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRL 212
EVT+ V+RAEE + +YA+IDLV ++R++RK + K D G FN
Sbjct: 53 EVTI-PMTGLVLRAEESHDDLYAAIDLVVDKLERQIRKHKTKVNRKLRDTGSPKYLFN-- 109
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+V++N A EDD DE +VR K + + P+ EAI Q+ + H+F+
Sbjct: 110 -------EVIDNGAPAHVAVEDDE--DEADLVRTKRYNLKPMDSEEAILQMNLLGHNFFV 160
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F N T E N+VYKR G YG+I
Sbjct: 161 FLNAATNETNVVYKRNDGKYGLI 183
>gi|228930190|ref|ZP_04093199.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228829475|gb|EEM75103.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 180
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +V +K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVGKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V A + + EED+ +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|227552030|ref|ZP_03982079.1| ribosome-associated inhibitor protein Y [Enterococcus faecium
TX1330]
gi|257886809|ref|ZP_05666462.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,141,733]
gi|257895378|ref|ZP_05675031.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com12]
gi|257897989|ref|ZP_05677642.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com15]
gi|293378247|ref|ZP_06624416.1| ribosomal subunit interface protein [Enterococcus faecium PC4.1]
gi|293572410|ref|ZP_06683390.1| ribosomal subunit interface protein [Enterococcus faecium E980]
gi|424762476|ref|ZP_18189985.1| ribosomal subunit interface protein [Enterococcus faecalis
TX1337RF]
gi|425055592|ref|ZP_18459065.1| ribosomal subunit interface protein [Enterococcus faecium 505]
gi|430841788|ref|ZP_19459706.1| ribosomal subunit interface protein [Enterococcus faecium E1007]
gi|431033351|ref|ZP_19491197.1| ribosomal subunit interface protein [Enterococcus faecium E1590]
gi|431077651|ref|ZP_19495116.1| ribosomal subunit interface protein [Enterococcus faecium E1604]
gi|431112218|ref|ZP_19497594.1| ribosomal subunit interface protein [Enterococcus faecium E1613]
gi|431586370|ref|ZP_19520885.1| ribosomal subunit interface protein [Enterococcus faecium E1861]
gi|431737078|ref|ZP_19526034.1| ribosomal subunit interface protein [Enterococcus faecium E1972]
gi|431741079|ref|ZP_19529987.1| ribosomal subunit interface protein [Enterococcus faecium E2039]
gi|431752331|ref|ZP_19541014.1| ribosomal subunit interface protein [Enterococcus faecium E2620]
gi|431757175|ref|ZP_19545806.1| ribosomal subunit interface protein [Enterococcus faecium E3083]
gi|227178783|gb|EEI59755.1| ribosome-associated inhibitor protein Y [Enterococcus faecium
TX1330]
gi|257822863|gb|EEV49795.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,141,733]
gi|257831943|gb|EEV58364.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com12]
gi|257835901|gb|EEV60975.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium Com15]
gi|291607472|gb|EFF36814.1| ribosomal subunit interface protein [Enterococcus faecium E980]
gi|292643111|gb|EFF61252.1| ribosomal subunit interface protein [Enterococcus faecium PC4.1]
gi|402424701|gb|EJV56869.1| ribosomal subunit interface protein [Enterococcus faecium TX1337RF]
gi|403033665|gb|EJY45156.1| ribosomal subunit interface protein [Enterococcus faecium 505]
gi|430493846|gb|ELA70130.1| ribosomal subunit interface protein [Enterococcus faecium E1007]
gi|430564452|gb|ELB03636.1| ribosomal subunit interface protein [Enterococcus faecium E1590]
gi|430566066|gb|ELB05187.1| ribosomal subunit interface protein [Enterococcus faecium E1604]
gi|430569172|gb|ELB08189.1| ribosomal subunit interface protein [Enterococcus faecium E1613]
gi|430593548|gb|ELB31534.1| ribosomal subunit interface protein [Enterococcus faecium E1861]
gi|430599454|gb|ELB37160.1| ribosomal subunit interface protein [Enterococcus faecium E1972]
gi|430602403|gb|ELB39976.1| ribosomal subunit interface protein [Enterococcus faecium E2039]
gi|430613822|gb|ELB50821.1| ribosomal subunit interface protein [Enterococcus faecium E2620]
gi|430619464|gb|ELB56291.1| ribosomal subunit interface protein [Enterococcus faecium E3083]
Length = 183
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ EEE++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAVLFNGEEENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|251799708|ref|YP_003014439.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
sp. JDR-2]
gi|247547334|gb|ACT04353.1| sigma 54 modulation protein/ribosomal protein S30EA [Paenibacillus
sp. JDR-2]
Length = 182
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 17/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K II+G +++T+ ++ + +K+ + E V LSV G+ I V
Sbjct: 1 MKYIIRGHRIQVTEALREYAVKKISRLEKYFEAPASETTVTLSVTKGKHAVEVTIPLVGV 60
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
L RAE+ +E +Y+SID+V ++R++RK K K + RH G L +E +
Sbjct: 61 ML--------RAEDKSEDMYSSIDVVVDKLERQIRKHKTKMNRKFRHESGVKAL-FKEGL 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q + D + E E +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 112 SQTAVSVMDEEDELE--------LVRTKRFMLKPMDVEEAILQMNMVGHNFFVFSNIDNK 163
Query: 279 EINIVYKRKAGGYGVI 294
E+N+VYKR G YG+I
Sbjct: 164 EVNVVYKRSDGKYGLI 179
>gi|372324996|ref|ZP_09519585.1| Ribosomal subunit interface protein [Oenococcus kitaharae DSM
17330]
gi|366983804|gb|EHN59203.1| Ribosomal subunit interface protein [Oenococcus kitaharae DSM
17330]
Length = 190
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 105/195 (53%), Gaps = 22/195 (11%)
Query: 103 IQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+ T+ ++N+++ EK+ + +++ + V++R + + EVT
Sbjct: 6 IRGENISTTEAIENYIKMRLEKLNNYIDANNNPIAHVNLR--------KYNEKTFKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ +RAEE Y+++DLVS+ + R++RK K + + R KGF + E V
Sbjct: 58 M-PLPFLTLRAEETQSDFYSAVDLVSAKLLRQIRKFKTRVNRKSRE-KGFKGIDFNEQVD 115
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
+V +A+ + E ++R K + P+ + EA Q+E +DHDF+ F N +T +
Sbjct: 116 PLVPEEAEDKKLE---------VIRRKTLSLKPMDLEEAALQMEMLDHDFFLFLNADTNQ 166
Query: 280 INIVYKRKAGGYGVI 294
++I+YKR G YG+I
Sbjct: 167 LDIIYKRDDGKYGLI 181
>gi|336113347|ref|YP_004568114.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
coagulans 2-6]
gi|335366777|gb|AEH52728.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
coagulans 2-6]
Length = 186
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 110/198 (55%), Gaps = 26/198 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP-RIRRCEVTLF 161
I+G+N+E+T ++++VE+KV K + V D ++V+ P + + E+T+
Sbjct: 6 IRGENIEVTPAIRDYVEKKVNKL---DRYFVETPDTSVNVK---LKVNPDKTSKVEITI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
V+RAEE E +YA+IDL++ ++R++RK H NR K+RE
Sbjct: 59 PMPQLVLRAEETNEDMYAAIDLIADKLERQIRK----------HKTKVNR-KLREKGSTR 107
Query: 220 QVVENDA---DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
++ DA + Q+ +E+D+ + IVR K F + P+ EA+ Q+ + H+F+ + + E
Sbjct: 108 ELFTPDAVLKEKQARKEEDSELQ--IVRTKHFNLKPMDSEEAVLQMNLLGHNFFIYTDAE 165
Query: 277 TGEINIVYKRKAGGYGVI 294
T NIVY+RK G YG+I
Sbjct: 166 TNHTNIVYRRKDGKYGLI 183
>gi|331701707|ref|YP_004398666.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
buchneri NRRL B-30929]
gi|406027257|ref|YP_006726089.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
CD034]
gi|329129050|gb|AEB73603.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
buchneri NRRL B-30929]
gi|405125746|gb|AFS00507.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
CD034]
Length = 188
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 108/195 (55%), Gaps = 20/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++++VE+++ K + K+ + V L V + K EVT+
Sbjct: 6 IRGENIEVTQAIRDYVEKRISK-LEKYFEKDMKNTAHVNLKVYPDKQAK------VEVTI 58
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV-T 219
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KGF L+ T
Sbjct: 59 -PLPYLTLRAEEMSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNLEFAPAADT 116
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
E+D+D +S+ + +VR K + P+ EAI Q++ + HDF+ + + ET
Sbjct: 117 SASESDSDDESKFQ--------VVRTKQLALKPMDNEEAILQMDMLGHDFFIYEDAETSG 168
Query: 280 INIVYKRKAGGYGVI 294
INIVY+R G YG+I
Sbjct: 169 INIVYRRNDGRYGLI 183
>gi|410458994|ref|ZP_11312748.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
azotoformans LMG 9581]
gi|409930700|gb|EKN67695.1| sigma 54 modulation protein / S30EA ribosomal protein [Bacillus
azotoformans LMG 9581]
Length = 183
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 18/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+ +T ++ +VE+K+GK +V+V LSV E ++ E
Sbjct: 1 MKFNIRGENITVTPAIREYVEKKIGKLEKYFEQKPTSDVNVNLSVYNNE-------QKIE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + ++RAEE +YA+ DLV + ++R++RK K K + R + R E
Sbjct: 54 VTI-PMTNLLLRAEESHVDMYAAADLVVNKLERQIRKHKTKVNRKLRQAEESPRYGFAET 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V +A+ Q + D++F +VR K F++ P+ EAI Q+ + H+F+ F N ET
Sbjct: 113 V------NANGQEDHGDEDFE---VVRNKRFDLKPMDSEEAILQMNMLGHNFFVFVNAET 163
Query: 278 GEINIVYKRKAGGYGVI 294
N+VY+R G YG+I
Sbjct: 164 NSTNVVYRRNDGKYGLI 180
>gi|319650631|ref|ZP_08004771.1| ribosomal subunit interface protein [Bacillus sp. 2_A_57_CT2]
gi|317397812|gb|EFV78510.1| ribosomal subunit interface protein [Bacillus sp. 2_A_57_CT2]
Length = 185
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 22/196 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+ K + D + V + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKIAKL---ERYFTETPDANVHVNLKTYNNNRS--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKVREPV 218
+ V+RAEED + +YA+IDL++ ++R++RK + K + G F L+
Sbjct: 59 MPNLVLRAEEDHDDMYAAIDLITDKLERQIRKHKTKVNRKFREKGNLTAVFAALENEIEA 118
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ E D D++ +VR K F++ P+ EAI Q+ + H FY F N E+
Sbjct: 119 PEAEEEDNDLE------------VVRQKSFDLKPMDSEEAILQMNMLGHSFYVFTNAESN 166
Query: 279 EINIVYKRKAGGYGVI 294
N+VYKRK G YG+I
Sbjct: 167 LTNVVYKRKDGRYGLI 182
>gi|332295606|ref|YP_004437529.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermodesulfobium narugense DSM 14796]
gi|332178709|gb|AEE14398.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermodesulfobium narugense DSM 14796]
Length = 179
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++++++ K + L++ +KN+ K+ K + K + EV V LS + K I EV
Sbjct: 1 MQIVVKDKGVNLSEDLKNYTTNKISK-LEKFFKKIIEVQVVLSKTSAK--KNKLIFSAEV 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F +RA+E +E + +IDLV ++R++ K KEK R++ N L
Sbjct: 58 TIFAA-GSTIRAQERSEDLRTAIDLVYDKLERQISKYKEKLVQRHRNLMNENFL------ 110
Query: 219 TQVVENDADVQSEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E++ + V E IV+ K F + P+T EAI +E + H+FY F N +T
Sbjct: 111 ------------EQKSEEVVHENKIVKTKKFPLKPITPEEAIIDMELLGHNFYVFINSQT 158
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N++YKR GGYG+I P
Sbjct: 159 MDVNVIYKRNEGGYGLIEP 177
>gi|392988942|ref|YP_006487535.1| ribosomal subunit interface protein [Enterococcus hirae ATCC 9790]
gi|392336362|gb|AFM70644.1| ribosomal subunit interface protein [Enterococcus hirae ATCC 9790]
Length = 186
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K + R G N +
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GMNT----ADAAVLF 114
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
N+AD ++ E+D+ +D IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 115 NNEAD-DADHENDSELD--IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 171
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 172 VYRRKDGKYGLI 183
>gi|83589096|ref|YP_429105.1| sigma 54 modulation protein / SSU ribosomal protein S30P [Moorella
thermoacetica ATCC 39073]
gi|83572010|gb|ABC18562.1| SSU ribosomal protein S30P [Moorella thermoacetica ATCC 39073]
Length = 190
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 111/201 (55%), Gaps = 25/201 (12%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
S ++LII+GKNL +TD ++ ++ +++GK + ++ V E+ V L+V +
Sbjct: 14 SRMELIIRGKNLPVTDALRQYIAKRLGK-IERYLDGVDEIQVNLAVTRDK-------HVV 65
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + ++R EE +Y S+DLV +++++ K K + N+ K++
Sbjct: 66 EVTIPLNGY-ILRGEEATGDMYGSVDLVVEKLEKQIAKYKTR----------LNK-KIK- 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
++ A Q EEE N + ++R K F + P+ V EAI Q+ + H F+ F N E
Sbjct: 113 --NGTIKEFAAGQPEEE--NGPEPRLIRTKRFPIKPMPVEEAILQMNLLGHSFFVFSNAE 168
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T E+N++Y+R+ G YG+I P+
Sbjct: 169 TEEVNVLYRRRDGNYGLIEPE 189
>gi|421766451|ref|ZP_16203225.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
gi|407625219|gb|EKF51934.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
Length = 185
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 110/201 (54%), Gaps = 25/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N ELTD+++++VE+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKYNIRGENFELTDSIRSYVEDKVGK-LEKYFNDGHEVTAYVNLKV----YSDKRYKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ +RAE+ A+ +YA+ID V + ++R++RK K + + + K+ P
Sbjct: 57 TV-PAKNVTLRAEDTADDMYAAIDFVEAKLERQIRKYKTRVN---------RKSKINVPT 106
Query: 219 TQVVEN-----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
Q + DAD + EE IVR K + P+ EA+ Q++ + HDFY F
Sbjct: 107 GQSFGDEFAPLDADEEVNEEQVK-----IVRTKHVSLKPMDAEEAVLQMDMLGHDFYIFT 161
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ +T N+VY+R G G+I
Sbjct: 162 DADTDGTNVVYRRTDGNIGLI 182
>gi|423451563|ref|ZP_17428416.1| ribosomal subunit interface protein [Bacillus cereus BAG5X1-1]
gi|423557292|ref|ZP_17533595.1| ribosomal subunit interface protein [Bacillus cereus MC67]
gi|401145271|gb|EJQ52797.1| ribosomal subunit interface protein [Bacillus cereus BAG5X1-1]
gi|401193100|gb|EJR00107.1| ribosomal subunit interface protein [Bacillus cereus MC67]
Length = 180
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T + +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALGEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSVKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E A + + EED+ +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 110 -----EAVAVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|418322603|ref|ZP_12933921.1| ribosomal subunit interface protein [Staphylococcus pettenkoferi
VCU012]
gi|365231319|gb|EHM72370.1| ribosomal subunit interface protein [Staphylococcus pettenkoferi
VCU012]
Length = 194
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 16/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNNVPNATAHVKVKTYHNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL++S ++R++RK K K DHG F L
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLITSKLERQVRKYKTRVNRKNRDHGIQ-DVFAALPD 114
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ + +AD +E + I+R K F + P+ EA+ Q+ + HDF+ FR+
Sbjct: 115 DQEIKATYNTEADKDDDE-----DEIEIIRSKQFSLKPMDAEEAVLQMNLLGHDFFVFRD 169
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T +IVYKRK G YG+I
Sbjct: 170 RDTEGTSIVYKRKNGKYGLI 189
>gi|390562670|ref|ZP_10244856.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrolancetus
hollandicus Lb]
gi|390172753|emb|CCF84168.1| Sigma 54 modulation protein/ribosomal protein S30EA [Nitrolancetus
hollandicus Lb]
Length = 196
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 19/205 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++I+ KN+ LTD ++ +++++V K + ++ D +L +R + G + +
Sbjct: 1 MDILIKTKNVRLTDGLREYIDKRVAKLDRLNERII---DAKLELRSEKNRSGAEEKIAQF 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE-- 216
T+ T K +RAEE + + A+IDL + R++++ H K F R + R+
Sbjct: 58 TIATGK-TTLRAEEKNDDLRAAIDLAVDRMARQIQRFH--------HKKIFARRRQRQLT 108
Query: 217 -----PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
P V ++ + E+D +VR K F++ P+ EAIEQ+E + HDF+
Sbjct: 109 APEPAPANAVNGAATELTLDLEEDEAPVSTLVRRKRFKIQPMGEDEAIEQMELLGHDFFV 168
Query: 272 FRNEETGEINIVYKRKAGGYGVIIP 296
F + + ++N++Y+RK G YG+I P
Sbjct: 169 FFSPDDAQVNVLYRRKDGQYGIIQP 193
>gi|159036563|ref|YP_001535816.1| sigma 54 modulation protein/ribosomal protein S30EA [Salinispora
arenicola CNS-205]
gi|157915398|gb|ABV96825.1| sigma 54 modulation protein/ribosomal protein S30EA [Salinispora
arenicola CNS-205]
Length = 208
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 26/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K + ++ H V VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAK-IERYDHKVIRVDVELF-----HERNPRQSDHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHM-----KG 208
R E+T F++ V+RAE Y+++D ++ + R R + HGRH
Sbjct: 55 RVEITCFSRG-PVMRAEACTSDFYSALDAAIARLDTRMRRAADRRRVHHGRHAPISVAAA 113
Query: 209 FNRLKVREPVTQVVEND-------ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQ 261
RL V + V + +D A+ EE DD I R K P+TV +A+ Q
Sbjct: 114 TARLPVTDLVAAPLSHDGATATVAAERPEEERDDQPWH--IAREKVHPAEPMTVDDALFQ 171
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDFY F+++E+G ++VY+R A YG+I
Sbjct: 172 MELVGHDFYLFQDKESGRPSVVYRRHAYDYGII 204
>gi|431762437|ref|ZP_19550999.1| ribosomal subunit interface protein [Enterococcus faecium E3548]
gi|430625129|gb|ELB61779.1| ribosomal subunit interface protein [Enterococcus faecium E3548]
Length = 183
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++++VE+KVGK S V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKLERYFSDAPDSTAHVNLKVYTEKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 59 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNT 107
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ EEE++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +
Sbjct: 108 ADAAVLFNGEEENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTS 167
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 168 IVYRRKDGKYGLI 180
>gi|363899704|ref|ZP_09326212.1| hypothetical protein HMPREF9625_00872 [Oribacterium sp. ACB1]
gi|361958002|gb|EHL11305.1| hypothetical protein HMPREF9625_00872 [Oribacterium sp. ACB1]
Length = 175
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I G+ + LT+ +KN VE+K+GK + K +V LS + +++ EV
Sbjct: 1 MKFSITGRTISLTEGLKNMVEKKLGK-LDKFFQADTPCNVTLSTQKD-------MQKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E +Y SIDLV +++R++RK K+K +H
Sbjct: 53 TI-PVKGSVIRAEESTEDMYQSIDLVVDVLERQIRKYKDKLI--AKH------------- 96
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
Q A E + + + IVR K ++ P+T EA Q+E + H F+ F N ++G
Sbjct: 97 -QSSSFTAAFLEEAAEYDEEEIKIVRTKQIDLKPMTPEEACLQMELLGHSFFVFLNGDSG 155
Query: 279 EINIVYKRKAGGYGVIIP 296
++N+VYKRK YG+I P
Sbjct: 156 KVNVVYKRKTKSYGLIEP 173
>gi|311070036|ref|YP_003974959.1| YvyD protein [Bacillus atrophaeus 1942]
gi|419821590|ref|ZP_14345183.1| YvyD protein [Bacillus atrophaeus C89]
gi|310870553|gb|ADP34028.1| YvyD [Bacillus atrophaeus 1942]
gi|388474226|gb|EIM10956.1| YvyD protein [Bacillus atrophaeus C89]
Length = 188
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFEHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+R+E E +Y +IDL ++ ++R++RK K K + R L +
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFREQGSPKHLFTNGSAS-- 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E D VQ E ++D+ IVR K F + P+ EAI Q+ + H F+ F N ET N
Sbjct: 116 -ETDVAVQDEIDEDS---PEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNLTN 171
Query: 282 IVYKRKAGGYGVIIP 296
+VY+R G YG+I P
Sbjct: 172 VVYRRNDGKYGLIEP 186
>gi|334342138|ref|YP_004547118.1| ribosomal subunit interface protein [Desulfotomaculum ruminis DSM
2154]
gi|334093492|gb|AEG61832.1| ribosomal subunit interface protein [Desulfotomaculum ruminis DSM
2154]
Length = 173
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 107/199 (53%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+E+T ++++VE+++GK + + + E L V G ++ EV
Sbjct: 1 MKVQVRGKNIEVTPALRDYVEKRLGK-LDRFLDNMGEAMATLVVEGDS-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE + +Y+S+DLV I+R++ + K K NR R +
Sbjct: 53 TIPVNGM-LLRGEEATDDMYSSVDLVVEKIERQISRYKGK----------LNRRNGRSQM 101
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E+ +D + + ++R K F + P+ + EA+ Q+ + HDF+ F N ET
Sbjct: 102 EFSAEDKSDAEEPK---------VLRTKRFAIKPMPLDEAVMQMNLLGHDFFVFSNAETE 152
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VYKRK G YG+I P+
Sbjct: 153 QVNVVYKRKDGNYGLIEPE 171
>gi|403383560|ref|ZP_10925617.1| hypothetical protein KJC30_02635 [Kurthia sp. JC30]
Length = 187
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++++VE K+ K + E+D +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIRDYVEGKISKL---ERYFNNEMDATANVNLKVYND--KRTKVEVTIPM 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG----FNRLKVREPV 218
K+ +RAEE + +YA ID + ++R++RK K K + R +G F EP
Sbjct: 61 KRL-TLRAEERNDDLYAGIDAIIDKLERQIRKHKTKINRKFRDREGVGLYFATTPPPEPE 119
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T VE +V+ E + +VR K F + P+ EAI Q+ + HDFY F + ET
Sbjct: 120 TDNVE---EVEDELQ--------VVRTKQFSLKPMDDEEAILQMNLLGHDFYIFTDAETN 168
Query: 279 EINIVYKRKAGGYGVI 294
E NIVY+RK G YG+I
Sbjct: 169 ETNIVYRRKDGKYGLI 184
>gi|427393821|ref|ZP_18887461.1| ribosomal subunit interface protein [Alloiococcus otitis ATCC
51267]
gi|425730436|gb|EKU93272.1| ribosomal subunit interface protein [Alloiococcus otitis ATCC
51267]
Length = 192
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 113/195 (57%), Gaps = 13/195 (6%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+TD ++++ E+K+ K + + VD ++++ R + EVT+
Sbjct: 6 IRGENIEVTDALRDYTEKKISKIERYFNKELTNVDAHVNLKI----YSDRSAKVEVTV-P 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE ++ +Y SIDLV+ ++R++RK K K + R + +R + +P
Sbjct: 61 LSNIVLRAEETSQDMYGSIDLVADKLERQIRKYKTKVNRKIRR-ENLSRPEAIDPDLW-- 117
Query: 223 ENDADVQSEEE---DDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
D+DV + ++ DD V IVR+K ++ P++ EA+ Q++ + HDF+ F + ET
Sbjct: 118 --DSDVPALDDNSKDDGDVSSSIVRIKQVDLKPMSPEEAVLQMDLLGHDFFIFEDAETEG 175
Query: 280 INIVYKRKAGGYGVI 294
+++VYKR YG++
Sbjct: 176 VSLVYKRHDDQYGLL 190
>gi|347530734|ref|YP_004837497.1| ribosome-associated protein Y (PSrp-1) [Roseburia hominis A2-183]
gi|345500882|gb|AEN95565.1| ribosome-associated protein Y (PSrp-1) [Roseburia hominis A2-183]
Length = 176
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 107/200 (53%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I G+N+ELT+ +K VE+K+ K + K+ +V V LSV ++ EV
Sbjct: 1 MRIKITGRNIELTEGLKAAVEDKLNK-LEKYFTPDTDVYVTLSVEKER-------QKAEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +R+E+ + +Y SIDLV +I+R+L+K + K ++ + +E +
Sbjct: 53 TI-PAKGNYIRSEQVSNDMYVSIDLVEEVIERQLKKYRTKLVTKQQNASAVFK---QEFL 108
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ D +++ I+R K F M P+ +A Q+E + HDF+ F N ET
Sbjct: 109 DGAADEDEEIK------------IIRTKKFSMKPMYPEDACVQMELLGHDFFVFINAETE 156
Query: 279 EINIVYKRKAGGYGVIIPKG 298
++N+VYKRK YG+I P+
Sbjct: 157 DVNVVYKRKGNTYGLIEPEN 176
>gi|307243698|ref|ZP_07525838.1| ribosomal subunit interface protein [Peptostreptococcus stomatis
DSM 17678]
gi|306492907|gb|EFM64920.1| ribosomal subunit interface protein [Peptostreptococcus stomatis
DSM 17678]
Length = 183
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 110/196 (56%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GK ++LTD + ++++K K L E ++R++V + K ++ EV
Sbjct: 1 MKITVSGKKIKLTDGITGYIDKKFSKL---EKLLDPEAELRVTVSANKKEK----QKVEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL + VVRAE+ + +Y++IDLVS + R++ K K K G G + ++ E
Sbjct: 54 TLDSINGHVVRAEDVQDDLYSAIDLVSDKLNRQIVKYKNKFKTRG---AGNSTIRF-ENF 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++VE + D+ + + V R K F + P++ EA+ Q+ + HDF+ F++++T
Sbjct: 110 DELVEEEIDILPGDSE-----LVFERKKRFNLRPMSAEEAVLQMNLLGHDFFLFKDQDTF 164
Query: 279 EINIVYKRKAGGYGVI 294
E+ +VY+R GGYG+I
Sbjct: 165 EVCLVYRRGDGGYGLI 180
>gi|348027320|ref|YP_004767125.1| ribosomal subunit interface protein [Megasphaera elsdenii DSM
20460]
gi|341823374|emb|CCC74298.1| ribosomal subunit interface protein [Megasphaera elsdenii DSM
20460]
Length = 174
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 104/200 (52%), Gaps = 36/200 (18%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCEVT 159
I++GKNLE+T +K+HVE++ K + EV+V+ LSV K +I E+T
Sbjct: 4 IVRGKNLEITPALKDHVEKQEKKVT---KYFDNEVNVQALLSVE-----KDRKI--AEIT 53
Query: 160 LFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK--GFNRLKVRE 216
L K GVV R E + +YA+IDLV + R++ K K K + R MK FN V
Sbjct: 54 L--KVDGVVLRGVEANDDMYAAIDLVYDKLVRQIHKYKTKIA---RRMKKGAFNDALVEG 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE + + R+K F P+ V EAI Q+ V HDF+ F N +
Sbjct: 109 PAV----------PEETFE------VARVKKFAARPMDVEEAILQMNLVGHDFFVFLNSK 152
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T IN+VYKRK G YG+I P
Sbjct: 153 TDTINVVYKRKHGKYGLIEP 172
>gi|72162891|ref|YP_290548.1| 30S ribosomal protein S30 [Thermobifida fusca YX]
gi|71916623|gb|AAZ56525.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Thermobifida fusca YX]
Length = 226
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 36/227 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+ +I++G+ ++D + HVE K+ K + VDV +S + PR+ R
Sbjct: 1 MDIIVKGRRTGVSDKFRRHVEHKLAKLRKWERKDMMSVDVEVSKE-----RNPRLANHRE 55
Query: 157 EVTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH--GRHMKGFNRLK 213
V L + G VVR E A+ Y ++DL ++ +LRK+ ++ H R +
Sbjct: 56 RVELTIRSSGPVVRGEAAADDRYTALDLALDRVEARLRKLADRRKVHKGSRGLVSVAAAT 115
Query: 214 VREPVT----------QVVENDADVQSEEED---------DNFVD-------EVIVRMKF 247
+ PV QVVE+ + Q+EE D D FV+ ++VR KF
Sbjct: 116 AQLPVDGLPADSAIPPQVVEDREENQAEEFDGSAVDSAFADEFVELDTEGGGSLVVREKF 175
Query: 248 FEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+T+ +A+ ++E V HDFY FR++E G ++VY+RK YGV+
Sbjct: 176 HYAKPMTIDQALLEMELVGHDFYLFRDKEQGLPSVVYRRKGFNYGVL 222
>gi|257873810|ref|ZP_05653463.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC10]
gi|257807974|gb|EEV36796.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC10]
Length = 185
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 60 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRE-TALVP 107
Query: 223 ENDADV---QSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
D D+ ++ +E+ N D IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 108 PTDGDLFTTEANDEETNGSDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 167
Query: 280 INIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|212640385|ref|YP_002316905.1| ribosome-associated protein [Anoxybacillus flavithermus WK1]
gi|212561865|gb|ACJ34920.1| Ribosome-associated protein Y (PSrp-1) [Anoxybacillus flavithermus
WK1]
Length = 182
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE---VDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+T ++ +VE+K+GK L+ E V V L V + K
Sbjct: 1 MKYNIRGENIEVTQAIREYVEKKIGK--LERYFESTEGVTVHVNLKVYNDKQAK------ 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ V+RAEE + +YA+IDLV ++R++RK H NR K+R
Sbjct: 53 IEVTI-PMPQIVLRAEERHDDMYAAIDLVVDKLERQIRK----------HKTKVNR-KMR 100
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E V A V E+ + +VR K F + P+ EAI Q+ + H+FY F N
Sbjct: 101 EKEANGVTLTATVPVATEEHEEEEFEVVRTKRFSLKPMDSEEAILQMNMLGHNFYVFINA 160
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET N+VYKRK G YG+I
Sbjct: 161 ETNRTNVVYKRKDGKYGLI 179
>gi|423484787|ref|ZP_17461476.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-2]
gi|401137373|gb|EJQ44955.1| ribosomal subunit interface protein [Bacillus cereus BAG6X1-2]
Length = 182
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 25/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 ---VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T + +A+ + ++ + +VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GSVKTNFILPEAEAVAVMDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 159
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T E N+VY RK G YG+I
Sbjct: 160 ADTNETNVVYGRKDGKYGLI 179
>gi|375290365|ref|YP_005124905.1| hypothetical protein CD241_0636 [Corynebacterium diphtheriae 241]
gi|375292582|ref|YP_005127121.1| hypothetical protein CDB402_0611 [Corynebacterium diphtheriae INCA
402]
gi|376242340|ref|YP_005133192.1| hypothetical protein CDCE8392_0646 [Corynebacterium diphtheriae
CDCE 8392]
gi|376245198|ref|YP_005135437.1| hypothetical protein CDHC01_0636 [Corynebacterium diphtheriae HC01]
gi|376247969|ref|YP_005139913.1| hypothetical protein CDHC04_0602 [Corynebacterium diphtheriae HC04]
gi|376250791|ref|YP_005137672.1| hypothetical protein CDHC03_0623 [Corynebacterium diphtheriae HC03]
gi|376253802|ref|YP_005142261.1| hypothetical protein CDPW8_0700 [Corynebacterium diphtheriae PW8]
gi|376256602|ref|YP_005144493.1| hypothetical protein CDVA01_0584 [Corynebacterium diphtheriae VA01]
gi|376287185|ref|YP_005159751.1| hypothetical protein CDBH8_0659 [Corynebacterium diphtheriae BH8]
gi|376289856|ref|YP_005162103.1| hypothetical protein CDC7B_0652 [Corynebacterium diphtheriae C7
(beta)]
gi|376292754|ref|YP_005164428.1| hypothetical protein CDHC02_0642 [Corynebacterium diphtheriae HC02]
gi|419860312|ref|ZP_14382957.1| hypothetical protein W5M_03226 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371580036|gb|AEX43703.1| hypothetical protein CD241_0636 [Corynebacterium diphtheriae 241]
gi|371582253|gb|AEX45919.1| hypothetical protein CDB402_0611 [Corynebacterium diphtheriae INCA
402]
gi|371584519|gb|AEX48184.1| hypothetical protein CDBH8_0659 [Corynebacterium diphtheriae BH8]
gi|372103252|gb|AEX66849.1| hypothetical protein CDC7B_0652 [Corynebacterium diphtheriae C7
(beta)]
gi|372105582|gb|AEX71644.1| hypothetical protein CDCE8392_0646 [Corynebacterium diphtheriae
CDCE 8392]
gi|372107828|gb|AEX73889.1| hypothetical protein CDHC01_0636 [Corynebacterium diphtheriae HC01]
gi|372110077|gb|AEX76137.1| hypothetical protein CDHC02_0642 [Corynebacterium diphtheriae HC02]
gi|372112295|gb|AEX78354.1| hypothetical protein CDHC03_0623 [Corynebacterium diphtheriae HC03]
gi|372114537|gb|AEX80595.1| hypothetical protein CDHC04_0602 [Corynebacterium diphtheriae HC04]
gi|372116886|gb|AEX69356.1| hypothetical protein CDPW8_0700 [Corynebacterium diphtheriae PW8]
gi|372119119|gb|AEX82853.1| hypothetical protein CDVA01_0584 [Corynebacterium diphtheriae VA01]
gi|387983520|gb|EIK56997.1| hypothetical protein W5M_03226 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 220
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
VK+ I G+N+E V H E+V + K S L D L+ E P RR E
Sbjct: 15 VKVTITGRNVE----VPEHFAERVNTKLAKISRL----DPTLNFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR- 211
+T K H + RAE ++ YA+++ + ++R LRK+K + S + G
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSIS---LSGHRAP 122
Query: 212 LKVREPVTQVVENDADVQSEE---EDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQ 261
L E ++V+ +A+V EE + D + D+V IVR K P++V +A+ +
Sbjct: 123 LGTGEAAAELVK-EAEVAREENKYDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDALSE 181
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDFY F NEETG+ ++VY+R+A YG+I
Sbjct: 182 MELVGHDFYLFVNEETGQPSVVYRRRAFDYGLI 214
>gi|376284197|ref|YP_005157407.1| hypothetical protein CD31A_0701 [Corynebacterium diphtheriae 31A]
gi|371577712|gb|AEX41380.1| hypothetical protein CD31A_0701 [Corynebacterium diphtheriae 31A]
Length = 220
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
VK+ I G+N+E V H E+V + K S L D L+ E P RR E
Sbjct: 15 VKVTITGRNVE----VPEHFAERVNTKLAKISRL----DPTLNFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR- 211
+T K H + RAE ++ YA+++ + ++R LRK+K + S + G
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSIS---LSGHRAP 122
Query: 212 LKVREPVTQVVENDADVQSEE---EDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQ 261
L E ++V+ +A+V EE + D + D+V IVR K P++V +A+ +
Sbjct: 123 LGTGEAAAELVK-EAEVAREENKHDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDALSE 181
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDFY F NEETG+ ++VY+R+A YG+I
Sbjct: 182 MELVGHDFYLFVNEETGQPSVVYRRRAFDYGLI 214
>gi|383755056|ref|YP_005433959.1| putative sigma 54 modulation protein [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381367108|dbj|BAL83936.1| putative sigma 54 modulation protein [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 180
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 21/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T +++ +VE++VGK V K+ V ++ V L+V KG I EVT+
Sbjct: 6 VRGKNIEITPSLREYVEKRVGK-VTKYFENVGDISVLLTV-----SKGRHI--VEVTVPV 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ ++R EE +Y SIDLV ++R++ K K K + R GF ++ P +
Sbjct: 58 QGGILLRGEEATMDMYTSIDLVVEKLERQIHKQKTKLARRFRG-GGFKAEALKTPAVEGP 116
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+D + Q + + P+ V EAI Q+ ++H+F+ FRN ET ++ +
Sbjct: 117 ADDEEYQVVKTKKF------------VVKPMDVQEAIMQMNLLNHNFFVFRNAETEDVQV 164
Query: 283 VYKRKAGGYGVI 294
VYKR G YG+I
Sbjct: 165 VYKRTDGNYGLI 176
>gi|38233305|ref|NP_939072.1| hypothetical protein DIP0698 [Corynebacterium diphtheriae NCTC
13129]
gi|38199564|emb|CAE49215.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 222
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
VK+ I G+N+E V H E+V + K S L D L+ E P RR E
Sbjct: 17 VKVTITGRNVE----VPEHFAERVNTKLAKISRL----DPTLNFFHVELQHEPNPRRSEQ 68
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR- 211
+T K H + RAE ++ YA+++ + ++R LRK+K + S + G
Sbjct: 69 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSIS---LSGHRAP 124
Query: 212 LKVREPVTQVVENDADVQSEE---EDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQ 261
L E ++V+ +A+V EE + D + D+V IVR K P++V +A+ +
Sbjct: 125 LGTGEAAAELVK-EAEVAREENKYDHDPYADKVEDVIPGQIVRTKEHPSTPMSVDDALSE 183
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDFY F NEETG+ ++VY+R+A YG+I
Sbjct: 184 MELVGHDFYLFVNEETGQPSVVYRRRAFDYGLI 216
>gi|395208365|ref|ZP_10397606.1| ribosomal subunit interface protein [Oribacterium sp. ACB8]
gi|394705946|gb|EJF13470.1| ribosomal subunit interface protein [Oribacterium sp. ACB8]
Length = 192
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 25/200 (12%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
S +K I G+ + LT+ +KN VE+K+GK + K +V LS + +++
Sbjct: 16 SIMKFSITGRTISLTEGLKNMVEKKLGK-LDKFFQADTPCNVTLSTQKD-------MQKI 67
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ K V+RAEE E +Y SIDLV +++R++RK K+K +H
Sbjct: 68 EVTIPVK-GSVIRAEESTEDMYQSIDLVVDVLERQIRKYKDKLI--AKH----------- 113
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
Q A E + + + IVR K ++ P+T EA Q+E + H F+ F N +
Sbjct: 114 ---QSSSFTAAFLEEAAEYDEEEIKIVRTKQIDLKPMTPEEACLQMELLGHSFFVFLNGD 170
Query: 277 TGEINIVYKRKAGGYGVIIP 296
+G++N+VYKRK YG+I P
Sbjct: 171 SGKVNVVYKRKTKSYGLIEP 190
>gi|56964833|ref|YP_176564.1| ribosomal protein S30EA [Bacillus clausii KSM-K16]
gi|56911076|dbj|BAD65603.1| ribosomal protein S30EA [Bacillus clausii KSM-K16]
Length = 184
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRG-GEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ ++E+KVGK +V+V+L V G GE EVT+
Sbjct: 5 IRGENIEVTPAIREYIEKKVGKLERYFDTTPTADVNVKLQVLGSGE-------SSIEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL--KVREPV 218
K ++R EE +YA+ID+V ++R++RK K K + R + EP+
Sbjct: 58 PMPKL-LLRGEEINADMYAAIDIVVEKLERQIRKYKTKVNRKFRQEGSLKYMFKNELEPL 116
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V D +++ +VR K F + P+ EAI Q++ + H+F+ F + E+G
Sbjct: 117 RDEVAEDDELE------------VVRTKRFNLKPMDAEEAILQMDLLGHNFFVFSDAESG 164
Query: 279 EINIVYKRKAGGYGVIIPKG 298
N+VY+RK G YG+I P+
Sbjct: 165 STNVVYRRKDGKYGLIEPEA 184
>gi|253680810|ref|ZP_04861613.1| ribosomal subunit interface protein [Clostridium botulinum D str.
1873]
gi|416348665|ref|ZP_11680423.1| ribosomal subunit interface protein [Clostridium botulinum C str.
Stockholm]
gi|253562659|gb|EES92105.1| ribosomal subunit interface protein [Clostridium botulinum D str.
1873]
gi|338196737|gb|EGO88918.1| ribosomal subunit interface protein [Clostridium botulinum C str.
Stockholm]
Length = 178
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 118/203 (58%), Gaps = 32/203 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
++K+I GKN+E+T ++ VE K+ K + K+ + +V LSV+ K +I E
Sbjct: 2 NIKVI--GKNIEVTKGLREAVERKLSK-LDKYFNPNVKVITTLSVQ-----KSRQI--VE 51
Query: 158 VTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLK 213
VT+ F +GV+ RAEE +YA+IDLV ++R++RK K K + HG +K
Sbjct: 52 VTIPF---NGVILRAEEANNDMYAAIDLVLEKLERQIRKQKTKLEKRKHGDALKF----- 103
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + + + DA+ DN V+ IV+ K F + P++ EA+ Q+E + H+F+ FR
Sbjct: 104 --QFIPEYIPKDAE-------DN-VESKIVKTKKFAVKPMSNEEAVLQMELLGHNFFVFR 153
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N +T E+N++YKRK G YG+I P
Sbjct: 154 NSDTDEVNVLYKRKDGQYGLIEP 176
>gi|381182379|ref|ZP_09891189.1| ribosomal subunit interface protein [Listeriaceae bacterium TTU
M1-001]
gi|380317722|gb|EIA21031.1| ribosomal subunit interface protein [Listeriaceae bacterium TTU
M1-001]
Length = 184
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 26/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T+ ++N+VE+K+ K + + V V L V + K E
Sbjct: 2 LKYNIRGENIEVTEPIRNYVEKKIDKLERYFTEVPDANVHVNLKVYSDKNAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLK 213
VT+ + V+RAEE + +YASIDL++ ++R++RK + K D G F +
Sbjct: 56 VTI-PLPNLVLRAEETSGDLYASIDLIADKLERQIRKHKTKVNRKMRDKGAQQDFFAFGE 114
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ E EN++D++ IVR K F++ P+ EA+ Q+ + H FY +
Sbjct: 115 ISESAPD--ENESDLE------------IVRTKQFDLKPMDSEEAVLQMNLLGHSFYVYT 160
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ E+ NIVY+RK G YG+I
Sbjct: 161 DAESDGTNIVYRRKDGKYGLI 181
>gi|313680329|ref|YP_004058068.1| 30S ribosomal protein S30/sigma-54 modulation protein
[Oceanithermus profundus DSM 14977]
gi|313153044|gb|ADR36895.1| SSU ribosomal protein S30P;sigma 54 modulation protein
[Oceanithermus profundus DSM 14977]
Length = 183
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 24/195 (12%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR---CEVTLF 161
G+N+E+T+ +KN+VE K + ++V + V LS+ G P + R E+ L
Sbjct: 8 GRNVEVTEALKNYVERKAERLDRYFDNIV-DAKVVLSIAGA-----PHVERRAKAEIQL- 60
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
G++R EE +YA+ID +++++L++ K + G+ G P
Sbjct: 61 NVPGGIIRVEESDPDMYAAIDRAVEVLEKQLKRFKGRLM--GKRHSGLG------PSAPP 112
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ + E IVR+K FEM P+T +A Q+E + H F+ FRN +TGEIN
Sbjct: 113 PPPPEEEEEPFE------PEIVRVKRFEMKPMTPEDAALQMEALGHTFFVFRNADTGEIN 166
Query: 282 IVYKRKAGGYGVIIP 296
++Y+R G YG+I P
Sbjct: 167 VIYRRHDGNYGLIEP 181
>gi|416849489|ref|ZP_11908108.1| ribosomal subunit interface protein, partial [Staphylococcus aureus
O46]
gi|323441289|gb|EGA98957.1| ribosomal subunit interface protein [Staphylococcus aureus O46]
Length = 183
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 20/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYG 292
ET +IVY+RK G YG
Sbjct: 166 RETDGTSIVYRRKDGKYG 183
>gi|374583721|ref|ZP_09656815.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus youngiae
DSM 17734]
gi|374419803|gb|EHQ92238.1| ribosome-associated protein Y (PSrp-1) [Desulfosporosinus youngiae
DSM 17734]
Length = 176
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+GK++ELTD +K +V ++VGK + K+S +V V L V R EVT
Sbjct: 5 IRGKHIELTDALKEYVMKRVGK-LAKYSDEFMDVQVTLLVERDR-------HRVEVT--A 54
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G ++R EE+ E +Y+SID+V ++R++ K + + + R K + PV
Sbjct: 55 PLNGMILRGEEETEDMYSSIDMVVEKLERQIDKYRTRINKRMR-TKVLKDHDSKHPVAA- 112
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
AD EE +VR K F P++V EAI Q+ V H F+ F N E+ E+N
Sbjct: 113 ----ADEPREE---------VVRHKKFSAKPMSVEEAIMQMNLVGHSFFVFTNSESQEMN 159
Query: 282 IVYKRKAGGYGVIIPK 297
+VY R G YG++ P+
Sbjct: 160 VVYLRNNGDYGLLQPQ 175
>gi|257867481|ref|ZP_05647134.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC30]
gi|257877560|ref|ZP_05657213.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC20]
gi|257801537|gb|EEV30467.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC30]
gi|257811726|gb|EEV40546.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
casseliflavus EC20]
Length = 180
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 1 MRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 54
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 55 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRE-TALVP 102
Query: 223 ENDADV---QSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
D D+ ++ +E+ N D IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 103 PTDGDLFTTEANDEETNGSDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 162
Query: 280 INIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 163 TSIVYRRKDGKYGLI 177
>gi|393201993|ref|YP_006463835.1| ribosome-associated protein Y [Solibacillus silvestris StLB046]
gi|406667207|ref|ZP_11074967.1| hypothetical protein B857_02792 [Bacillus isronensis B3W22]
gi|327441324|dbj|BAK17689.1| ribosome-associated protein Y [Solibacillus silvestris StLB046]
gi|405384899|gb|EKB44338.1| hypothetical protein B857_02792 [Bacillus isronensis B3W22]
Length = 185
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T ++++VE K+ K + L +V L V + K E
Sbjct: 2 LKFNIRGENIEVTPAIRDYVENKIEKVERYFNEDLNANANVNLKVYNDKQTK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K+ +RAEE +YA++DL+ ++R++RK K K + R +G
Sbjct: 56 VTI-PMKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFRDREGTGVYFAN-- 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
VT +E +A+ SE+E IVR K F++ P+ EA+ Q+ + HDFY F + ET
Sbjct: 113 VTSQMEANAE-SSEDE------YTIVRTKQFDLKPMDQEEAVLQMNMLGHDFYIFTDAET 165
Query: 278 GEINIVYKRKAGGYGVI 294
NIVYKRK G YG+I
Sbjct: 166 DGTNIVYKRKDGKYGLI 182
>gi|302671844|ref|YP_003831804.1| ribosomal subunit interface protein [Butyrivibrio proteoclasticus
B316]
gi|302396317|gb|ADL35222.1| ribosomal subunit interface protein [Butyrivibrio proteoclasticus
B316]
Length = 176
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+E+T +++ VE+K+GK + K+ +V L+V + EV
Sbjct: 1 MKFTIVGKNIEVTPGLRSAVEDKIGK-LEKYFTPDTNANVTLNVDKER-------HKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLKVREP 217
T+ K ++RAE+ + +Y SIDLV +I+R+L+K K K D + F +
Sbjct: 53 TIPVKGK-IIRAEQISNDMYVSIDLVEEVIERQLKKYKSKLVDKQQAEASNFKK------ 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ +E D +EED I RMK F+ P+ +A Q+E + H+F+ F N +T
Sbjct: 106 --EYIETDY---MDEEDIR-----IERMKKFDPKPMYAEDACVQMELLGHNFFVFVNADT 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK YG+I P
Sbjct: 156 DQVNVVYKRKGNTYGLIEP 174
>gi|374340422|ref|YP_005097158.1| ribosomal subunit interface protein [Marinitoga piezophila KA3]
gi|372101956|gb|AEX85860.1| ribosomal subunit interface protein [Marinitoga piezophila KA3]
Length = 181
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 27/193 (13%)
Query: 106 KNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
KN+ELT +++++E EK+ + KH L+ ++R+ K + EVT
Sbjct: 8 KNIELTKALEDYLEKRMEKIDRMFKKHDDLLMGTEIRVE-------KDRETYKVEVTSHL 60
Query: 163 KKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K G + + EE +Y ID VS +RKL+K+K K +H N LK +PV
Sbjct: 61 KFKGSIFKVEERGTDLYEVIDKVSDAFERKLKKVKGKLQNHD----APNPLKDVKPV--- 113
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ ++ED+ F I + K F+M ++ EAI QLE + H+F+ FRN E+ E+N
Sbjct: 114 -------ELDDEDELFSK--IEKRKRFDMSMFSLEEAILQLELLGHEFFVFRNSESEEVN 164
Query: 282 IVYKRKAGGYGVI 294
++YKRK G G+I
Sbjct: 165 VIYKRKDGTLGLI 177
>gi|163789842|ref|ZP_02184278.1| ribosomal subunit interface protein [Carnobacterium sp. AT7]
gi|159874782|gb|EDP68850.1| ribosomal subunit interface protein [Carnobacterium sp. AT7]
Length = 180
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 111/196 (56%), Gaps = 22/196 (11%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
K ++G+N+E+T ++++VE+KVGK V K+ + V E ++++ + + EVT
Sbjct: 3 KYNVRGENIEVTAAIRSYVEKKVGK-VEKYFNDVPEATAHVNLKT----YSDKTAKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + V+RAEE + +Y S+DLVS ++R++RK K K + R +G N V PV
Sbjct: 58 I-PLPYLVLRAEETSPDLYGSVDLVSDKLERQMRKYKTKIN---RRTRGSN--VVVPPVL 111
Query: 220 QVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EE ++ DEV IVR K + P+ EA+ Q++ + H+F+ F + +T
Sbjct: 112 ----------PGEEQESHEDEVNIVRTKRLSLKPMDSEEAVLQMDMLGHNFFIFEDADTN 161
Query: 279 EINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 162 GTSIVYRRKDGKYGLI 177
>gi|423471338|ref|ZP_17448082.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-2]
gi|402432818|gb|EJV64874.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-2]
Length = 180
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T + +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALGEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSVKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V A + + EED+ +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 108 LPEAV---AVLDAVEEDE----LELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|374298114|ref|YP_005048305.1| ribosomal subunit interface protein [Clostridium clariflavum DSM
19732]
gi|359827608|gb|AEV70381.1| ribosomal subunit interface protein [Clostridium clariflavum DSM
19732]
Length = 176
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+ GKN+E+T+ +K +KVGK + K + E + +SV+ K +I EV
Sbjct: 1 MKFIVSGKNIEVTEALKEKAIKKVGK-LEKFFNDDTEAHITMSVQ-----KNRQI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K G++RA+E+ E +YASID V ++ +LR+ K K S H G LK
Sbjct: 53 TI-PFKGGLLRAQEENEDMYASIDKVVDSLEGQLRRYKTKISKK-YHESG---LKF---- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+D +++ EE+ + +VR K F + P+TV EAI Q+ + H F+ F N +T
Sbjct: 104 -----DDTNIEEHEEETDEFK--VVRSKKFPIKPMTVEEAILQMNMLGHSFFMFLNADTM 156
Query: 279 EINIVYKRKAGGYGVIIP 296
E N+VY+RK G YG+I P
Sbjct: 157 EANVVYRRKDGNYGLIEP 174
>gi|269837492|ref|YP_003319720.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sphaerobacter thermophilus DSM 20745]
gi|269786755|gb|ACZ38898.1| sigma 54 modulation protein/ribosomal protein S30EA [Sphaerobacter
thermophilus DSM 20745]
Length = 194
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 107/195 (54%), Gaps = 7/195 (3%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+ +NL LTD ++ ++E ++ + + K V D + +R G + T+ T
Sbjct: 5 IKARNLRLTDALQEYIESRLQR-LDKIDQKV--TDAKFEIRSERNRTGGEQMVAQFTIAT 61
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K ++R EE ++ +IDL ++R++R+ ++K + R + + EP+
Sbjct: 62 K-DAILRTEEKNRDIHVAIDLAIERMERQIRRFRDKRVFYRRRQRQMA-AEAGEPLPVST 119
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ DV EEE+ E++VR K F++ P++ EAIEQ+E + HDF+ F N + EIN+
Sbjct: 120 LDGLDVAEEEEETP--SELLVRRKRFKIQPMSEEEAIEQMELLGHDFFVFFNPDLAEINV 177
Query: 283 VYKRKAGGYGVIIPK 297
+Y+R+ G YGVI P+
Sbjct: 178 LYRRRDGLYGVIQPE 192
>gi|418007519|ref|ZP_12647401.1| ribosomal subunit interface protein [Lactobacillus casei UW4]
gi|410548758|gb|EKQ22946.1| ribosomal subunit interface protein [Lactobacillus casei UW4]
Length = 185
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 107/199 (53%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKV-------GKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+T+ ++++VE+++ G +V +H V L V + K
Sbjct: 6 VRGENIEVTEAIRSYVEKRISKLNKFFGGSVTATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ +RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ +
Sbjct: 54 VEVTI-PLSFLTLRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDID 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
A+ + E++DN +VR K + P+ EAI Q++ + H+F+ F +
Sbjct: 112 ATAP------AEPKPAEDNDNLT---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDA 162
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVYKR+ G YG+I
Sbjct: 163 DTNGTSIVYKRRDGRYGLI 181
>gi|410452436|ref|ZP_11306425.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
bataviensis LMG 21833]
gi|409934481|gb|EKN71366.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Bacillus
bataviensis LMG 21833]
Length = 182
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+T ++ +VE+K+ K + D + V +F + + + EV
Sbjct: 1 MKYNVRGENIEVTPAIREYVEKKITKL---ERYFTEAPDAMVHV-NLKFNQD-KTSKVEV 55
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ V+RAEE +YA IDL++ ++R++RK K K + R F PV
Sbjct: 56 TI-PLPQLVLRAEETNLDMYAGIDLITDKLERQIRKHKTKVNRKFREKGDF-------PV 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T ++ +EDD +VR K F++ P+ EAI Q+ + H FY F N ++
Sbjct: 108 TFATTESSEAHDVDEDD----LELVRTKRFDLKPMDSEEAILQMNMLGHSFYVFTNSDSN 163
Query: 279 EINIVYKRKAGGYGVI 294
N+VYKRK G YG+I
Sbjct: 164 RTNVVYKRKDGRYGLI 179
>gi|253701983|ref|YP_003023172.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M21]
gi|251776833|gb|ACT19414.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M21]
Length = 182
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 19/193 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E +D +K++ EEK+ + V K+ V V L+V +IR T K
Sbjct: 8 RHMEPSDALKSYAEEKLER-VKKYIDEPIVVQVFLTVE--------KIRHMAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YASID VS I+R+LR+ KE+ H R QV ++
Sbjct: 59 ITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARER--------QVQKSI 110
Query: 226 ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 285
+ QS EE VI++ K F M P++V EA+ Q+E + DF + T +IN+VY+
Sbjct: 111 VEAQSIEEGAQ--APVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESSTEKINVVYR 168
Query: 286 RKAGGYGVIIPKG 298
RK G YG+I P+
Sbjct: 169 RKDGNYGLISPEN 181
>gi|374320754|ref|YP_005073883.1| hypothetical protein HPL003_04455 [Paenibacillus terrae HPL-003]
gi|357199763|gb|AET57660.1| hypothetical protein HPL003_04455 [Paenibacillus terrae HPL-003]
Length = 184
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKNKTKLNRKFRQKGSLKTLFVEDP 112
Query: 218 VTQV-VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V V DA++ E +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGSVAVAEDAELDELE---------VVRTKRFLLKPMDVEEAILQMNMVGHNFFVFANID 163
Query: 277 TGEINIVYKRKAGGYGVI 294
E+++VYKR G YG+I
Sbjct: 164 NEEVSVVYKRNDGKYGLI 181
>gi|365903497|ref|ZP_09441320.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus
malefermentans KCTC 3548]
Length = 185
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSVRGGEFGKGPRIRRCEV 158
I+G+N+E+T+ ++++VE+++ K + + VD V L V + K EV
Sbjct: 6 IRGENIEVTNAIRDYVEKRLNKL---EKYFEKNVDSTAHVNLKVYQNKTAK------VEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + +RAEE + +YAS+DLV+ ++R++RK K K + R KGF L
Sbjct: 57 TI-PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRE-KGFKNL------ 108
Query: 219 TQVVENDADVQSEEEDDNFVDEVI--VRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
D QSEE+ N ++ I VR K + P+ EAI Q++ + HDF+ + + +
Sbjct: 109 ------DFAPQSEEDSSNEDEKAIEVVRTKRVSLKPMDNEEAILQMDMLGHDFFVYEDSD 162
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++IVY+R G YG+I
Sbjct: 163 TNGVSIVYRRNDGRYGLI 180
>gi|405980057|ref|ZP_11038398.1| ribosomal subunit interface protein [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391432|gb|EJZ86496.1| ribosomal subunit interface protein [Actinomyces turicensis
ACS-279-V-Col4]
Length = 215
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 25/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K L + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITLFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH----MKGFN 210
R E+T++ K ++RAE ++ YA++D+ + + +LR+++++ DH R M
Sbjct: 55 RIELTVYGKG-PIIRAEAESGDRYAAVDIAAGKLFERLRRLRDRAKDHRRRYSHEMDEVE 113
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDE----------VIVRMKFFEMPPLTVSEAIE 260
L+ PV +E A ++ +D V E ++VR K E P+TV EA+
Sbjct: 114 FLEEPAPVEDTIEEAAPLKLRSAEDLKVGEAREEQLGDTPILVRQKVHEAEPMTVDEALN 173
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
Q+E V H F+ F ++ET + +VY R YGV+
Sbjct: 174 QMEMVGHPFFLFIDKETKQPCVVYHRHGWTYGVL 207
>gi|386760149|ref|YP_006233366.1| ribosome-associated sigma 54 modulation protein [Bacillus sp. JS]
gi|384933432|gb|AFI30110.1| ribosome-associated sigma 54 modulation protein [Bacillus sp. JS]
Length = 189
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 29/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK H V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVEKKIGKLERYFDHSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PV 218
+R+E E +Y +IDL ++ ++R++RK K K NR K RE P
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPK 106
Query: 219 TQVV-----ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 YLLASGFGSDTDIAVQDDIEEEESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 165 NAETNLTNVVYRRNDGKYGLIEP 187
>gi|297618039|ref|YP_003703198.1| ribosomal subunit interface protein [Syntrophothermus lipocalidus
DSM 12680]
gi|297145876|gb|ADI02633.1| ribosomal subunit interface protein [Syntrophothermus lipocalidus
DSM 12680]
Length = 180
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 111/200 (55%), Gaps = 23/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+ELTD ++ +VE+++ K + + ++E V LSV G R EV
Sbjct: 1 MRIEVRGKNIELTDALREYVEKRLSK-LERFIDDLKEAQVTLSVEGD-------THRVEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ +GV+ R EE + +Y+S+DLV +++++ K K R + + + +++
Sbjct: 53 TI--PLNGVILRGEEKTDDMYSSVDLVVDKLEKQIDKYK------TRIYRRYREVGLKKG 104
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
T +A EEE +VR K F + P+ V EAI Q+ + H F+ F N E+
Sbjct: 105 AT----GEAPPVKEEEKGEAAK--VVRTKRFALKPMDVEEAIMQMNLLGHSFFVFFNVES 158
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N++Y+R+ G YG+I P+
Sbjct: 159 AEVNVLYRRRDGNYGLIEPE 178
>gi|172058434|ref|YP_001814894.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sibiricum 255-15]
gi|171990955|gb|ACB61877.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sibiricum 255-15]
Length = 187
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 26/202 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSH--LVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+NL++TD +K++VE+K+ K + + V L V + ++ EVT+
Sbjct: 5 IRGENLDVTDALKDYVEKKLEKLTRYFTTPTEAQTAYVNLKVNNEK-------QKVEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG-----FNRLKVR 215
+ ++RAE+ +YA+IDLV ++R++RK K K + GR G F L+
Sbjct: 58 -PMPNLLLRAEDVNGDMYAAIDLVVDKLERQIRKHKTKINRRGRAKDGGIGEYFKTLEGP 116
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E V E D ++E E +VR K F + P+ EAI Q++ + H F+ F +
Sbjct: 117 EAEAPVYEED---EAELE--------LVRTKRFTLKPMDTEEAILQMDMLGHTFFVFSDA 165
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
ETG N+VY+RK G YG+I P+
Sbjct: 166 ETGNTNVVYRRKDGRYGLIEPE 187
>gi|383807036|ref|ZP_09962597.1| hypothetical protein IMCC13023_05590 [Candidatus Aquiluna sp.
IMCC13023]
gi|383299466|gb|EIC92080.1| hypothetical protein IMCC13023_05590 [Candidatus Aquiluna sp.
IMCC13023]
Length = 202
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 108/202 (53%), Gaps = 9/202 (4%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I KNL ++D +++V EK GK V + +H +E++++++ G G + E+
Sbjct: 1 MELRISAKNLTVSDRFRDYVTEKAGK-VEQFAHRPQELNIKITRYEHSKGAGQE-DQVEL 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG------RHMKGFNRL 212
T++ H VVRAE A +A+ D+ + + +LR+ +K+ H F L
Sbjct: 59 TVYEPGH-VVRAEARASDKFAAFDIAFAKLLERLRRYSDKQKKHQGLGASELTASDFRDL 117
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+ +Q++ + V +E+ + ++++R K FE +T EA+ +E V HDFY +
Sbjct: 118 AIVPADSQLLTGEIPVLKQEQPEEPEGQLVIRSKEFEKNAMTKEEAVSHMELVGHDFYLY 177
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
+ E + +VY+RKA YGVI
Sbjct: 178 HDLEHDKAAVVYRRKAYSYGVI 199
>gi|239636635|ref|ZP_04677637.1| ribosomal subunit interface protein [Staphylococcus warneri L37603]
gi|445060265|ref|YP_007385669.1| ribosomal subunit interface protein [Staphylococcus warneri SG1]
gi|239597990|gb|EEQ80485.1| ribosomal subunit interface protein [Staphylococcus warneri L37603]
gi|443426322|gb|AGC91225.1| ribosomal subunit interface protein [Staphylococcus warneri SG1]
Length = 191
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 13/197 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV-DVRLSVRGGEFGKGPRIRRCE 157
++ I G NL +TD ++N++EEK+GK +++ V V++ K E
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNNVPNAVAHVKVKTYSNSTTK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K +RAEE + +YA +DL+++ ++R++RK K + + R +R
Sbjct: 56 VTI-PLKDVTLRAEERHDDLYAGVDLITNKLERQVRKYKTRVNRKHR-----DRGDQEVF 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V +V E + S E++N D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 110 VAEVQEAPPEEISGAEENNDNDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 169
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 170 DGTSIVYRRKDGKYGLI 186
>gi|206901298|ref|YP_002251125.1| ribosomal subunit interface protein [Dictyoglomus thermophilum
H-6-12]
gi|206740401|gb|ACI19459.1| ribosomal subunit interface protein [Dictyoglomus thermophilum
H-6-12]
Length = 179
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 107/191 (56%), Gaps = 24/191 (12%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
KN+ +TD ++ + E+K+ + + + + ++V S ++ G + R EVT+ K +
Sbjct: 8 KNVNITDNLQQYAEKKLSR-LSRFFDNIENIEVLFS--EEDWKDGSKRHRVEVTI--KAN 62
Query: 166 G-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
G +++A E + SIDLV ++ +L+++KEK D GR + +RE +
Sbjct: 63 GRIIKASEANQDFRTSIDLVVDKLETQLKRLKEKLVDKGRRAES-----IREIL------ 111
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
A+ + EE+ +V++K F + P+ V EAI Q+E + HDF+ FR+ ET I +VY
Sbjct: 112 -AEKEVEEKPQ------VVKVKRFLLKPMDVEEAILQMELLGHDFFIFRDAETDRIGVVY 164
Query: 285 KRKAGGYGVII 295
KRK G YG+II
Sbjct: 165 KRKDGKYGLII 175
>gi|197117262|ref|YP_002137689.1| ribosomal subunit interface-associated sigma-54 modulation protein
[Geobacter bemidjiensis Bem]
gi|197086622|gb|ACH37893.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Geobacter bemidjiensis Bem]
Length = 182
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 19/192 (9%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E +D +K++ EEK+ + V K+ V V L+V +IR T K
Sbjct: 8 RHMEPSDALKSYAEEKLER-VKKYIDEPIVVQVFLTVE--------KIRHMAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YASID VS I+R+LR+ KE+ H R QV ++
Sbjct: 59 ITIKAAEETNDMYASIDAVSDKIERQLRRFKERIKAHKPAPDARER--------QVQKSI 110
Query: 226 ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 285
+ QS EE VI++ K F M P++V EA+ Q+E + DF + T +IN+VY+
Sbjct: 111 VEAQSIEEGAQ--APVIIKTKSFSMKPMSVEEAVMQMELLHKDFLVYTESSTEKINVVYR 168
Query: 286 RKAGGYGVIIPK 297
RK G YG+I P+
Sbjct: 169 RKDGNYGLISPE 180
>gi|390457187|ref|ZP_10242715.1| hypothetical protein PpeoK3_24499 [Paenibacillus peoriae KCTC 3763]
Length = 184
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR-IRRCE 157
+ L ++G+ +E+TD +K++V++K S L + D + G R + E
Sbjct: 1 MNLTVRGQQIEVTDALKDYVDKK-------FSRLEKYFDAPPTSDGSVTLSTTRDLHTVE 53
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ V+RAE++++ +YASID V ++R++RK K K + R L V +P
Sbjct: 54 VTI-PLPGLVLRAEDESDDMYASIDAVVDKLERQIRKNKTKLNRKFRQKGSLKTLFVEDP 112
Query: 218 VTQVV-ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
VV DA++ E +VR K F + P+ V EAI Q+ V H+F+ F N +
Sbjct: 113 AGNVVVAEDAELDELE---------VVRTKRFLLKPMDVEEAILQMNMVGHNFFVFANID 163
Query: 277 TGEINIVYKRKAGGYGVI 294
E+++VYKR G YG+I
Sbjct: 164 NEEVSVVYKRNDGKYGLI 181
>gi|355681872|ref|ZP_09062160.1| hypothetical protein HMPREF9469_05197 [Clostridium citroniae
WAL-17108]
gi|354811283|gb|EHE95916.1| hypothetical protein HMPREF9469_05197 [Clostridium citroniae
WAL-17108]
Length = 176
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLSVRGGEFGKGPRIRRCE 157
++ I G+N+E+T +K VE+K+GK L+H EV V LS + ++ E
Sbjct: 1 MRYTITGRNIEVTPGLKAAVEKKIGK--LEHFFTPDTEVIVALSAQKDR-------QKIE 51
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ K + +RAEE + +Y SIDLV +I+R++R+ ++K D + F++ + E
Sbjct: 52 VTIPVKGN-TIRAEESSTDMYVSIDLVEEVIERQIRRYRKKLIDKKQAAVSFSQAFIEEE 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ V++++ F + P EA Q+E + H+FY F N +T
Sbjct: 111 DEIQDDEIQIVKTKK---------------FAIKPTIPEEACLQMEMLGHNFYVFLNADT 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VYKRK G YG+I P
Sbjct: 156 DQVNVVYKRKNGTYGLIEP 174
>gi|169826756|ref|YP_001696914.1| hypothetical protein Bsph_1176 [Lysinibacillus sphaericus C3-41]
gi|168991244|gb|ACA38784.1| Hypothetical yvyD protein [Lysinibacillus sphaericus C3-41]
Length = 183
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + +V+ +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVENKIEKV---ERYFNEDVNANANVNLKVYN--DKQTKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE +YA++DL+ ++R++RK K K + R +G + TQ V
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREG---AGLYFATTQAV 116
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
AD +EE+ + IVR K F++ P+ EA+ Q+ + HDFY F + E+ NI
Sbjct: 117 ---ADTTLDEEEYS-----IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNI 168
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 169 VYKRKDGKYGLI 180
>gi|260892368|ref|YP_003238465.1| sigma 54 modulation protein/ribosomal protein S30EA [Ammonifex
degensii KC4]
gi|260864509|gb|ACX51615.1| sigma 54 modulation protein/ribosomal protein S30EA [Ammonifex
degensii KC4]
Length = 177
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 112/199 (56%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+E+T+ ++ +VE+++GK + + ++ + E V LS+ + EV
Sbjct: 1 MRITVRGKNIEVTEALRQYVEKRLGK-LERFANYLGEAQVVLSLEREN-------HKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +YA+IDLV ++R++ + K K R ++G P
Sbjct: 53 TI-NMNGMILRGEEATHDMYAAIDLVVDKLERQIERYKGKWLR--RRVEG-----SAAPS 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T +E + EEE+ +V++K F P+++ EAI Q+ + H+F+ F N ET
Sbjct: 105 TPYLEPAG--KGEEEEFR-----VVKVKRFAWKPMSIKEAILQMNLLGHNFFVFTNAETE 157
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VY+RK G YG+I P+
Sbjct: 158 QVNVVYRRKDGNYGLIEPE 176
>gi|16080584|ref|NP_391411.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|221311481|ref|ZP_03593328.1| hypothetical protein Bsubs1_19101 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315808|ref|ZP_03597613.1| hypothetical protein BsubsN3_19017 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320723|ref|ZP_03602017.1| hypothetical protein BsubsJ_18980 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325008|ref|ZP_03606302.1| hypothetical protein BsubsS_19136 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321313077|ref|YP_004205364.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BSn5]
gi|384177163|ref|YP_005558548.1| YvyD [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|418031251|ref|ZP_12669736.1| hypothetical protein BSSC8_06800 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428281126|ref|YP_005562861.1| hypothetical protein BSNT_05372 [Bacillus subtilis subsp. natto
BEST195]
gi|449095979|ref|YP_007428470.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
XF-1]
gi|452913692|ref|ZP_21962320.1| ribosomal subunit interface protein [Bacillus subtilis MB73/2]
gi|732321|sp|P28368.2|YVYD_BACSU RecName: Full=Putative sigma-54 modulation protein; AltName:
Full=Hst23; AltName: Full=SigL modulation protein
gi|499384|emb|CAA83251.1| orf189 [Bacillus subtilis]
gi|1762348|gb|AAC44956.1| sigma-54 modulator homolog [Bacillus subtilis subsp. subtilis str.
168]
gi|2636057|emb|CAB15548.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
subsp. subtilis str. 168]
gi|291486083|dbj|BAI87158.1| hypothetical protein BSNT_05372 [Bacillus subtilis subsp. natto
BEST195]
gi|320019351|gb|ADV94337.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BSn5]
gi|349596387|gb|AEP92574.1| YvyD [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|351472310|gb|EHA32423.1| hypothetical protein BSSC8_06800 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407962367|dbj|BAM55607.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BEST7613]
gi|407966381|dbj|BAM59620.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
BEST7003]
gi|449029894|gb|AGE65133.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
XF-1]
gi|452118720|gb|EME09114.1| ribosomal subunit interface protein [Bacillus subtilis MB73/2]
Length = 189
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 27/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +K+HVE K+GK H V + DV ++++ + + EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFDHSV-DADVNVNLKF----YNDKESKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 59 MTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPKY 107
Query: 218 -VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ + +D D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 108 LLANGLGSDTDIAVQDDIEEEESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>gi|241894821|ref|ZP_04782117.1| ribosome-associated inhibitor protein Y [Weissella
paramesenteroides ATCC 33313]
gi|241871942|gb|EER75693.1| ribosome-associated inhibitor protein Y [Weissella
paramesenteroides ATCC 33313]
Length = 238
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 130/245 (53%), Gaps = 28/245 (11%)
Query: 64 SSFFGPFKQITVMRPTKVHTKPLPV-----------RMSWDGPLSSVKLIIQGKNLELTD 112
++FF ++ +T+ P + + V + S G ++ ++G+N+E+TD
Sbjct: 4 NAFFFCYQYVTIYLPIGYRNESIKVYKIKILGILSYKFSQTGDRIMLEFKVRGENIEITD 63
Query: 113 TVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 169
+ ++E+++ + + + + V+VR S + G F + EVT+ + ++R
Sbjct: 64 AMSEYIEKRISRLERYLNTEASYIARVNVR-SYKEGTF-------KTEVTI-QLPYLLLR 114
Query: 170 AEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQ 229
AE+ +Y ++D VS ++R++RK K K + R KG+ L+ + + V+ A V+
Sbjct: 115 AEDTQTDMYQTVDFVSDKLERQIRKYKTKVNRKSRE-KGYKGLENTDFMA--VDPAAAVE 171
Query: 230 SEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAG 289
E +D+ ++ IVR K ++ P+ V EA+ Q+E + H+F+ F++ ET +VYKR+ G
Sbjct: 172 EPEPEDDGLE--IVRTKHVDLKPMDVEEAVLQMELLGHEFFIFQDAETDLPAVVYKRRDG 229
Query: 290 GYGVI 294
Y ++
Sbjct: 230 KYALL 234
>gi|229164126|ref|ZP_04292062.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
cereus R309803]
gi|228619362|gb|EEK76252.1| Sigma 54 modulation protein / SSU ribosomal protein S30P [Bacillus
cereus R309803]
Length = 180
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 112/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+GK + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLGK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSVKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|255527899|ref|ZP_05394743.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
carboxidivorans P7]
gi|255508399|gb|EET84795.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
carboxidivorans P7]
Length = 175
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + GKN+E+T ++N VE K+ K + K+ + EV LSV+ K +I EV
Sbjct: 1 MRITVSGKNIEVTSALRNTVERKLSK-LEKYFNPDVEVYATLSVQ-----KNRQI--VEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ +G++ R EE+ + +YASIDLV ++ ++RK K K H +K F +
Sbjct: 53 TI--PFNGIILRGEEENDDMYASIDLVVDKLEGQIRKQKTKLQRRTHSDSLK-FQFIPDL 109
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EP + +EE IV+ K F + P++ EA+ Q+E + H+F+ +++
Sbjct: 110 EP-----------KDKEESK------IVKTKRFAIKPMSSEEAVLQMELLGHNFFVYKDA 152
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
E GE+N+VYKRK G YG+I P+
Sbjct: 153 ENGEVNVVYKRKDGNYGLIEPE 174
>gi|325571394|ref|ZP_08146894.1| ribosomal subunit interface protein [Enterococcus casseliflavus
ATCC 12755]
gi|420262010|ref|ZP_14764653.1| ribosomal subunit interface protein [Enterococcus sp. C1]
gi|325155870|gb|EGC68066.1| ribosomal subunit interface protein [Enterococcus casseliflavus
ATCC 12755]
gi|394771032|gb|EJF50816.1| ribosomal subunit interface protein [Enterococcus sp. C1]
Length = 185
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 111/195 (56%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 60 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRE-TALVP 107
Query: 223 ENDADV---QSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
D D+ ++ +E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 108 PTDGDLFTTEANDEENNGSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 167
Query: 280 INIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|402777694|ref|YP_006631638.1| ribosome-associated sigma 54 modulation protein [Bacillus subtilis
QB928]
gi|430756688|ref|YP_007207967.1| hypothetical protein A7A1_1196 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|402482873|gb|AFQ59382.1| Ribosome-associated sigma 54 modulation protein [Bacillus subtilis
QB928]
gi|430021208|gb|AGA21814.1| Hypothetical protein YvyD [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 190
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 27/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +K+HVE K+GK H V + DV ++++ + + EVT+
Sbjct: 6 IRGENIEVTPALKDHVERKIGKLERYFDHSV-DADVNVNLKF----YNDKESKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 60 MTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPKY 108
Query: 218 -VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ + +D D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 109 LLANGLGSDTDIAVQDDIEEEESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 166
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
ET N+VY+R G YG+I P
Sbjct: 167 AETNLTNVVYRRNDGKYGLIEP 188
>gi|407980386|ref|ZP_11161175.1| ribosome-associated inhibitor A [Bacillus sp. HYC-10]
gi|407412867|gb|EKF34622.1| ribosome-associated inhibitor A [Bacillus sp. HYC-10]
Length = 187
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 15/197 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T +++HVE+K+GK + +VD ++V + + EVT+
Sbjct: 5 VRGENIEVTPALRDHVEKKIGKL---ERYFESDVDASVNVNLKFYNDQES--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+RAE E +Y ++DL +S ++R++RK K K + + F ++ +
Sbjct: 59 MTDLALRAEVHNEDMYNAVDLAASKLERQIRKHKTKVN------RKFREQGAKKHLFAGG 112
Query: 223 ENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
ADV + DD VDE IVR K F + P+ EAI Q+ + H F+ F N ET N
Sbjct: 113 NGAADVAVQ--DDEEVDETEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNLTN 170
Query: 282 IVYKRKAGGYGVIIPKG 298
+VY+R G YG+I P
Sbjct: 171 VVYRRNDGKYGLIEPNA 187
>gi|430748510|ref|YP_007211418.1| ribosomal subunit interface protein [Thermobacillus composti KWC4]
gi|430732475|gb|AGA56420.1| ribosomal subunit interface protein [Thermobacillus composti KWC4]
Length = 184
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 39/204 (19%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL-- 160
I+G+ L +T+ ++++ E+K+ R ++ + P +VTL
Sbjct: 5 IRGRQLPVTEALRDYAEKKLS-------------------RLDKYFEAPLASDAQVTLSV 45
Query: 161 FTKKHGV----------VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN 210
KH V +RAEE + +YA+IDLV ++R++RK K + + R +G
Sbjct: 46 IKNKHVVEVTIPLPGVLLRAEERHDDMYAAIDLVVDKLERQIRKHKTRVNRKLRQDRGLK 105
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
L + V V EEDD F +VR K + P+ V EAI Q+ + H+F+
Sbjct: 106 ALFTEDSAGAVT-----VAEAEEDDAFE---VVRTKRHTLKPMDVDEAILQMNLLGHNFF 157
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F N+ET E+N+VY+R G YG+I
Sbjct: 158 VFINDETKEVNVVYRRHDGKYGLI 181
>gi|398308474|ref|ZP_10511948.1| ribosome-associated sigma 54 modulation protein [Bacillus
mojavensis RO-H-1]
Length = 189
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 29/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE+K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTSALKDHVEKKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PV 218
+R+E E +Y +IDL ++ ++R++RK H NR K RE P
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGLPK 106
Query: 219 TQVV-----ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + + D VQ E E+D ++ IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 SALANGLGSDTDIAVQDEIEEDESLE--IVRQKRFNLKPMDNEEAILQMNMLGHNFFVFT 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 165 NAETNLTNVVYRRNDGKYGLIEP 187
>gi|291460987|ref|ZP_06026274.2| putative sigma(54) modulation protein [Fusobacterium periodonticum
ATCC 33693]
gi|291379621|gb|EFE87139.1| putative sigma(54) modulation protein [Fusobacterium periodonticum
ATCC 33693]
Length = 195
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 105/204 (51%), Gaps = 31/204 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I G+ + LTD +K + EEK+ + V K + + ++D L+ + G E
Sbjct: 14 SMKLSIHGRKITLTDAIKKYAEEKISR-VEKFNDSILKIDATLAASKLKTGNA---HVTE 69
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ + ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 70 ILAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDD 118
Query: 218 VTQ-------VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
+ +VE + V E++ +VR+ + + P+ +SEAI QLE ++ F+
Sbjct: 119 TRKKSYSFDYIVEPEEKVSDEKK--------LVRV-YLPLKPMEISEAILQLEYLNRVFF 169
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F N ETG++ +VYKRK G YGVI
Sbjct: 170 AFTNSETGKMAVVYKRKDGDYGVI 193
>gi|452991755|emb|CCQ96912.1| ribosome-associated sigma 54 modulation protein [Clostridium
ultunense Esp]
Length = 183
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 116/200 (58%), Gaps = 21/200 (10%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I+G+N+E+T +K++VE+++ K + K+ R+++ ++++ + G R EVT+
Sbjct: 3 FLIRGENIEVTPALKDYVEKRMSK-LDKYFEYDRDIEATVTLKVYKDG-----HRVEVTI 56
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--V 218
++RAE+ +E +YASID V ++R++RK K + NR K+RE +
Sbjct: 57 -PLTGLLLRAEDKSEDMYASIDNVVDKLERQVRKYKTR----------VNR-KLREGDGL 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + + ++E D+ IVR K F + P+ EAI Q+ + H+F+ F+N +T
Sbjct: 105 KGAIHINGNGKTENPDEEEE-LEIVRTKRFNLKPMDAEEAILQMNLLGHNFFVFQNVDTN 163
Query: 279 EINIVYKRKAGGYGVIIPKG 298
E+++VYKRK G YG+I P+
Sbjct: 164 EVSVVYKRKDGRYGLIEPEA 183
>gi|451344299|ref|ZP_21913359.1| ribosomal subunit interface protein [Eggerthia catenaformis OT 569
= DSM 20559]
gi|449337013|gb|EMD16181.1| ribosomal subunit interface protein [Eggerthia catenaformis OT 569
= DSM 20559]
Length = 176
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 112/199 (56%), Gaps = 29/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLV--REVDVRLSVRGGEFGKGPRIRRC 156
+K+ ++GKN+E+TD++K V +K+ K +L+ E++ ++ VR +G ++
Sbjct: 1 MKVNLRGKNIEITDSIKEKVTKKLSKL---DKYLIAGEEIEAKVLVRTYPYG-----QKI 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVR 215
EVT+ T+ ++RAEE E +Y +IDL+ ++R++RK K + S + K FN
Sbjct: 53 EVTIPTR-LVLLRAEETNEDLYDAIDLIIDKLERQIRKNKTRLSRKNKDNKLAFN----- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
V + ++ EED+ +V+ K P+ + EA+ Q+E + H F+ + +
Sbjct: 107 ------VASLGELPEVEEDE------VVKTKAISPKPMDLEEAVMQMELIGHSFFVYEDV 154
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET ++++VYKR GGYG++
Sbjct: 155 ETNKVSVVYKRTHGGYGLL 173
>gi|257870237|ref|ZP_05649890.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
gallinarum EG2]
gi|357050503|ref|ZP_09111701.1| hypothetical protein HMPREF9478_01684 [Enterococcus saccharolyticus
30_1]
gi|257804401|gb|EEV33223.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
gallinarum EG2]
gi|355381156|gb|EHG28283.1| hypothetical protein HMPREF9478_01684 [Enterococcus saccharolyticus
30_1]
Length = 185
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE + +YASIDLV ++R++RK K K NR K RE V
Sbjct: 60 LPFLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETAL-VA 107
Query: 223 ENDADV---QSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
++ D+ + EE+ N + IVR K + P+ EA+ Q+ + H+F+ F + ET
Sbjct: 108 PDNGDLFTTDTNEEETNGAELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNG 167
Query: 280 INIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 168 TSIVYRRKDGKYGLI 182
>gi|299821878|ref|ZP_07053766.1| ribosomal subunit interface protein [Listeria grayi DSM 20601]
gi|299817543|gb|EFI84779.1| ribosomal subunit interface protein [Listeria grayi DSM 20601]
Length = 189
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 113/200 (56%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + ++ + + +V ++++ + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDK-LERYFNETPDANVHVNLKV----YSDKSAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ + V+RAEE +YAS+DL++ ++R++RK + K D G F ++
Sbjct: 57 TI-PLPNLVLRAEETNGDLYASVDLIADKLERQIRKHKTKVNRKFRDKGSEKDYFAFSEI 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
ND+ SEE D ++ D IVR K F + P+ EA+ Q+ + H+F+ F +
Sbjct: 116 ---------NDS-TPSEETDSDY-DIEIVRTKSFSLKPMDSEEAVLQMNLLGHNFFVFND 164
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET NIVYKRK G YG+I
Sbjct: 165 AETNGTNIVYKRKDGKYGLI 184
>gi|239828323|ref|YP_002950947.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus sp. WCH70]
gi|239808616|gb|ACS25681.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. WCH70]
Length = 182
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+K+GK +++ + V V L V + GK EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENTEDI-HVHVNLKVYNDKQGK------IEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++RAEE + +YA+IDLV+ ++R++RK H NR K+R T+
Sbjct: 58 -PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK----------HKTKVNR-KLRNKETK 105
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
V + E++ + IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 106 QVLVTQNNNPPVEENEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNAETNRT 165
Query: 281 NIVYKRKAGGYGVI 294
NIVY+RK G YG+I
Sbjct: 166 NIVYRRKDGKYGLI 179
>gi|365851225|ref|ZP_09391665.1| ribosomal subunit interface protein [Lactobacillus parafarraginis
F0439]
gi|363717257|gb|EHM00637.1| ribosomal subunit interface protein [Lactobacillus parafarraginis
F0439]
Length = 219
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 24/208 (11%)
Query: 94 GPL----SSVKLI--IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGE 146
GPL +V LI I+G+N+E+T ++++VE+++ K + V L V +
Sbjct: 24 GPLMVKGENVMLIFNIRGENIEVTQAIRDYVEKRISKLEKYFEKDMKNTAHVNLRVYPDK 83
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
K EVT+ + +RAEE + +YAS+DLV+ ++R++RK K K + R
Sbjct: 84 QAK------VEVTI-PLPYLTLRAEEVSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE- 135
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVD 266
KGF L + + N+ + +D++ D +VR K + P+ EAI Q++ +
Sbjct: 136 KGFKNL-------EFIPNETQPADDSDDESKFD--VVRTKRLALKPMDNEEAILQMDMLG 186
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVI 294
HDF+ + + +T I+IVY+R G YG+I
Sbjct: 187 HDFFIYEDADTSGIDIVYRRNDGRYGLI 214
>gi|227494986|ref|ZP_03925302.1| ribosome-associated inhibitor protein Y [Actinomyces coleocanis DSM
15436]
gi|226831438|gb|EEH63821.1| ribosome-associated inhibitor protein Y [Actinomyces coleocanis DSM
15436]
Length = 220
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 26/216 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----I 153
++ + I G+N E+ + +VEEKV K + R +DV L+ + PR
Sbjct: 4 TMDITIVGRNAEIHPNFRAYVEEKVAKVTQLYPRAQR-IDVELT-----HERNPRQAETA 57
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-------- 205
R E+T+F K ++RAE + +A++D+ + +LR+ +++ DH R
Sbjct: 58 ERIELTVFGKG-PIIRAEASSSDRHAAVDIAVGKLFERLRRARDRAKDHRRRYDTPIAVD 116
Query: 206 MKGF--NRLKVRE-PVT--QVVENDADVQ-SEEEDDNFVDE-VIVRMKFFEMPPLTVSEA 258
+ G + ++V E PVT + + + AD++ E ++ F D VIVR K E P+TV +A
Sbjct: 117 LGGIVPDEVEVEEAPVTAEESLRSAADLKPGEVREEQFGDSPVIVRQKLHEAEPMTVDQA 176
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ Q+E V H F+ F + ETG+ +VY R+ YGVI
Sbjct: 177 LYQMELVGHPFFLFVDVETGQPCVVYHREGWTYGVI 212
>gi|323703020|ref|ZP_08114676.1| ribosomal subunit interface protein [Desulfotomaculum nigrificans
DSM 574]
gi|333924713|ref|YP_004498293.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532033|gb|EGB21916.1| ribosomal subunit interface protein [Desulfotomaculum nigrificans
DSM 574]
gi|333750274|gb|AEF95381.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 174
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 107/199 (53%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+++T ++++VE+++GK + K + E L V G ++ EV
Sbjct: 1 MKVQVRGKNIDVTPALRDYVEKRLGK-LEKFLDNIGEAQATLVVEGDA-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +Y++IDLV ++R++ + K K NR R P
Sbjct: 53 TIPVNGM-LLRGEEATGDMYSAIDLVVEKMERQISRYKGK----------INRRNGRNPA 101
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
DV E+ ++ +V+ R K F + P+ + EAI Q+ + HDF+ F N +T
Sbjct: 102 -------GDVAGGEKIEDETPKVL-RTKRFAIKPMPLDEAIMQMNLLGHDFFVFSNADTE 153
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N++YKRK G YG+I P+
Sbjct: 154 QVNVIYKRKDGNYGLIEPE 172
>gi|326203367|ref|ZP_08193232.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
papyrosolvens DSM 2782]
gi|325986625|gb|EGD47456.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
papyrosolvens DSM 2782]
Length = 176
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 112/201 (55%), Gaps = 28/201 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ +II GKN+E+T+ ++ V ++V K + K + EV V LSV+ R+ + E
Sbjct: 1 MNIIISGKNIEITEALREKVTKRV-KKLEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ +GV +RAE+ E +Y SID +I+R++RK K R + F+ R
Sbjct: 52 ITI--PFNGVTLRAEDQNEDMYTSIDRAVDLIERQIRKNK------TRLERRFHDNDFRV 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
T+ ++ DVQ E E +VR K F + P+ V EAI Q+ + H+F+ F N +
Sbjct: 104 DNTKFID---DVQEETEFK------VVRSKRFAVKPMDVEEAILQMNLLGHEFFMFYNAD 154
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
+ ++N+VYKRK G YG+I P+
Sbjct: 155 SRQVNVVYKRKDGNYGLIEPE 175
>gi|403387504|ref|ZP_10929561.1| SSU ribosomal protein S30P [Clostridium sp. JC122]
Length = 174
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 32/193 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCEVTLFT 162
GKN+ELT +++ V++K+ K + EV+ LSV RC++ +
Sbjct: 7 GKNIELTSALRDVVDKKLSKL---DKYFSEEVNANATLSVEKN---------RCKIEVTI 54
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+GV +RAEE E +YA+IDLV ++ ++RK K K K ++ V
Sbjct: 55 PFNGVRLRAEEKHEDMYAAIDLVLDKLESQIRKQKTKLQ------------KRKQNVDLN 102
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
N D + E+E+ IV+ K F + P++ EAI Q+E + HDF+ F N T N
Sbjct: 103 FNNIDDYKYEDEEPK-----IVKTKKFAIKPMSTEEAILQMELLGHDFFVFTNSHTSMAN 157
Query: 282 IVYKRKAGGYGVI 294
++YKRK G YG+I
Sbjct: 158 VLYKRKDGNYGLI 170
>gi|376259769|ref|YP_005146489.1| ribosomal subunit interface protein [Clostridium sp. BNL1100]
gi|373943763|gb|AEY64684.1| ribosomal subunit interface protein [Clostridium sp. BNL1100]
Length = 176
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 34/204 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ +II GKN+E+T+ ++ V ++V K + K + EV V LSV+ R+ + E
Sbjct: 1 MNIIISGKNIEITEALREKVTKRV-KKLEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ +GV +RAE+ E +Y SID +I+R++RK K RL+ R
Sbjct: 52 ITI--PFNGVTLRAEDQNEDMYTSIDRAVDLIERQIRKNK-------------TRLERR- 95
Query: 217 PVTQVVENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
END V + + +D+ +E +VR K F + P+ V EAI Q+ + H+F+ F
Sbjct: 96 ----FHENDFRVDNSKFNDDVQEETEFKVVRSKRFAIKPMDVEEAILQMNLLGHEFFMFY 151
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N ++ ++N+VYKRK G YG+I P+
Sbjct: 152 NADSRQVNVVYKRKDGNYGLIEPE 175
>gi|221195721|ref|ZP_03568775.1| light-repressed protein [Atopobium rimae ATCC 49626]
gi|221184487|gb|EEE16880.1| light-repressed protein [Atopobium rimae ATCC 49626]
Length = 195
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 23/205 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP---RIRR 155
V + I G+ + ++D +++HVEEK+G A+ DV L V K P +
Sbjct: 2 VDIKISGRKVTVSDALRSHVEEKIGDALKVFDIQPMTCDVVLRV-----DKNPSNLERKS 56
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD---HGRHMKGFNRL 212
EVT+F + V + +Y +ID + + R+LRK K + D H ++ +G R
Sbjct: 57 VEVTVFVRNSVVRVVSS-GDDMYGAIDEAAEKVTRQLRKYKTRIVDKHHHAQNTRG--RA 113
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+E + ++E A ED +D+ +VR K+ ++ P+T EA+ Q + + HDFY F
Sbjct: 114 LSQEELANLIETPA------ED---LDDQLVREKYIDLLPMTEEEALVQTDLLGHDFYVF 164
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
N TG N++Y RK GGYG+I P+
Sbjct: 165 VNSTTGLTNVIYHRKNGGYGIIKPR 189
>gi|336054488|ref|YP_004562775.1| ribosome-associated inhibitor protein Y [Lactobacillus
kefiranofaciens ZW3]
gi|333957865|gb|AEG40673.1| Ribosome-associated inhibitor protein Y [Lactobacillus
kefiranofaciens ZW3]
Length = 180
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 108/196 (55%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELTQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNKKSRE-KGLQDFFVEQP- 113
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
Q E++ F IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 114 ----------QEEKKPSEFD---IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETN 160
Query: 279 EINIVYKRKAGGYGVI 294
++VY+R G YG+I
Sbjct: 161 GTSVVYRRNDGRYGLI 176
>gi|374337472|ref|YP_005094174.1| ribosomal subunit interface protein [Streptococcus macedonicus
ACA-DC 198]
gi|372283574|emb|CCF01762.1| Ribosomal subunit interface protein [Streptococcus macedonicus
ACA-DC 198]
Length = 182
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 112/196 (57%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++N+VE K+GK + K+ + +D R++++ GK ++ EV
Sbjct: 2 IKYSIRGENIEVTDAIRNYVESKLGK-IEKYFRPEQVLDTRVNLKVYR-GKTAKV---EV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDSI-TLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIAKKHRE---------KLPD 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ ++ + + EE +VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIFTSEFEAEPVEEGPAVK---VVRTKHVSLKPMDIDEALLQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G+I
Sbjct: 164 VTNVLYRREDGELGLI 179
>gi|125975356|ref|YP_001039266.1| sigma 54 modulation protein / 30S ribosomal protein S30P
[Clostridium thermocellum ATCC 27405]
gi|256005498|ref|ZP_05430460.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 2360]
gi|281419316|ref|ZP_06250331.1| ribosomal subunit interface protein [Clostridium thermocellum JW20]
gi|385777791|ref|YP_005686956.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 1313]
gi|419724019|ref|ZP_14251112.1| ribosomal subunit interface protein [Clostridium thermocellum AD2]
gi|419726157|ref|ZP_14253180.1| ribosomal subunit interface protein [Clostridium thermocellum YS]
gi|125715581|gb|ABN54073.1| ribosomal subunit interface protein [Clostridium thermocellum ATCC
27405]
gi|255990553|gb|EEU00673.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 2360]
gi|281406936|gb|EFB37199.1| ribosomal subunit interface protein [Clostridium thermocellum JW20]
gi|316939471|gb|ADU73505.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
thermocellum DSM 1313]
gi|380770209|gb|EIC04106.1| ribosomal subunit interface protein [Clostridium thermocellum YS]
gi|380779971|gb|EIC09676.1| ribosomal subunit interface protein [Clostridium thermocellum AD2]
Length = 177
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 27/201 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ + GKN+ +T+ +K +KVGK + K+ E + +SV+ K I EV
Sbjct: 1 MRFKVVGKNIVVTEALKEAAVKKVGK-LDKYFRRDAEATITMSVQ-----KNRHI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVRE 216
T+ + G++RAEED+ +YASID V ++R++R+ K K + H ++ F +K
Sbjct: 53 TI-PFEGGLLRAEEDSPDMYASIDKVIDSLERQIRRNKTKLEKKVHDGSLR-FENIKF-- 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+D +V+ E + + +VR K F + P+TV EAI Q+ + H F+ F N E
Sbjct: 109 -------DDDEVEEEPKFE------VVRTKKFAIKPMTVEEAILQMNLLGHQFFMFSNAE 155
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T E N+VY+RK G YG+I P+
Sbjct: 156 TNEANVVYRRKDGNYGLIEPE 176
>gi|334139339|ref|ZP_08512731.1| ribosomal subunit interface protein [Paenibacillus sp. HGF7]
gi|333602152|gb|EGL13583.1| ribosomal subunit interface protein [Paenibacillus sp. HGF7]
Length = 182
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 22/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGG-EFGKGPRIRRCE 157
+K ++G +LE+T ++ +VE+K+ S L + + L+ G I E
Sbjct: 1 MKFTVRGDHLEITAALREYVEKKL-------SRLEKYFEAPLNSEGFVTLSVVKNIHTVE 53
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VT+ GV+ RAE + +YA+IDLV ++R++RK K K + R ++G N+ ++ +
Sbjct: 54 VTI--PLQGVLLRAENKDQDMYAAIDLVVDKLERQVRKHKTKMNRKIR-LEG-NKRELSK 109
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+QV+ D EEED +VR K F + P+ + EAI Q+ V HDF+ F N +
Sbjct: 110 LESQVLTMD----EEEEDYE-----LVRTKRFTLKPMDIDEAILQMNMVGHDFFVFSNMD 160
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T ++N+VYKR G YG+I P
Sbjct: 161 TEQVNVVYKRDDGRYGLIEP 180
>gi|150015322|ref|YP_001307576.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium beijerinckii NCIMB 8052]
gi|149901787|gb|ABR32620.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
beijerinckii NCIMB 8052]
Length = 177
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 107/199 (53%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELTD +K V++K+ K + K+ + E LSV+ R ++
Sbjct: 1 MKVTVIAKNMELTDALKEIVQKKISK-LEKYFEVNVEAKATLSVQKN---------RHKI 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +GVV R EE +Y S+DLV ++R++RK K + S F +
Sbjct: 51 EVMIPFNGVVLRGEESTSDMYKSLDLVEDKLERQIRKQKTRLSRKHSGSLRFGEI----- 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N+ D++ EEDD +V++K F + P+ EAI Q++ + H+F+ +++ ++
Sbjct: 106 ------NNIDIKPSEEDDG----KLVKVKKFGVKPMNSEEAILQMDLLGHNFFVYQDADS 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N++YKRK G YG++ P
Sbjct: 156 SKVNVIYKRKDGDYGLLEP 174
>gi|157693931|ref|YP_001488393.1| ribosome-associated inhibitor A [Bacillus pumilus SAFR-032]
gi|194015625|ref|ZP_03054241.1| ribosome-associated inhibitor A [Bacillus pumilus ATCC 7061]
gi|157682689|gb|ABV63833.1| ribosome-associated inhibitor A [Bacillus pumilus SAFR-032]
gi|194013029|gb|EDW22595.1| ribosome-associated inhibitor A [Bacillus pumilus ATCC 7061]
Length = 187
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRCEVTL 160
++G+N+++T +++HVE+K+GK L R E DV SV + + EVT+
Sbjct: 5 VRGENIDVTPALRDHVEKKIGK-------LERYFETDVDASVNVNLKFYNDQESKVEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
+RAE E +Y ++DL +S ++R++RK K K + R L T
Sbjct: 58 -PMTDLALRAEVHNEDMYNAVDLAASKLERQIRKHKTKVNRKFREQGAKKHLFAGGNGTA 116
Query: 221 VVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
D VQ +EE +DE IVR K F + P+ EAI Q+ + H F+ F N ET
Sbjct: 117 ----DVAVQDDEE----IDETEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETNL 168
Query: 280 INIVYKRKAGGYGVIIPKG 298
N+VY+R G YG+I P
Sbjct: 169 TNVVYRRNDGKYGLIEPNA 187
>gi|423718625|ref|ZP_17692807.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus thermoglucosidans TNO-09.020]
gi|383368227|gb|EID45500.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus thermoglucosidans TNO-09.020]
Length = 183
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 109/199 (54%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+K+GK +++ V V V L V + GK EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENTEDV-HVHVNLKVYNDKQGK------IEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---P 217
++RAEE + +YA+IDLV+ ++R++RK H NR K+R+
Sbjct: 58 -PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK----------HKTKVNR-KLRDRDKE 105
Query: 218 VTQVVENDADVQSEE--EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
V QV A VQ+ ED+ + IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 106 VKQV----ATVQTNAPAEDNEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA 161
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET NIVY+RK G YG+I
Sbjct: 162 ETNRTNIVYRRKDGKYGLI 180
>gi|331270419|ref|YP_004396911.1| ribosomal subunit interface protein [Clostridium botulinum
BKT015925]
gi|329126969|gb|AEB76914.1| ribosomal subunit interface protein [Clostridium botulinum
BKT015925]
Length = 184
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 116/203 (57%), Gaps = 32/203 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
++K+I GKN+E+T ++ VE K+ K + K+ +V LSV+ K +I E
Sbjct: 8 NIKVI--GKNIEVTKGLREAVERKLSK-LDKYFDPNVKVITTLSVQ-----KSRQI--VE 57
Query: 158 VTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLK 213
VT+ F +GV+ RAEE +YA+IDLV ++R++RK K K + HG +K
Sbjct: 58 VTIPF---NGVILRAEEANIDMYAAIDLVLEKLERQIRKQKTKLEKRKHGDALKF----- 109
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + + V DA DN V+ IV+ K F + P++ EA+ Q+E + H+F+ FR
Sbjct: 110 --QFIPEYVPKDAQ-------DN-VESKIVKTKRFAIKPMSNEEAVLQMELLGHNFFVFR 159
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N +T E+N++YKRK G YG+I P
Sbjct: 160 NSDTDEVNVLYKRKDGQYGLIEP 182
>gi|116333275|ref|YP_794802.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus brevis ATCC
367]
gi|116098622|gb|ABJ63771.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Lactobacillus brevis ATCC 367]
Length = 186
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 105/193 (54%), Gaps = 19/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV-DVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+TD ++++VE+++ K + V + + L V + K EVT+
Sbjct: 6 IRGENIEVTDAIRDYVEKRISKLEKYFDNNVEAIAHINLKVYQNKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KG+ L T+
Sbjct: 59 PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGYKNLDFS---TET 114
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E+D + E + +VR K + P+ EA+ Q++ + HDF+ + + E+ I+
Sbjct: 115 SESDKPAEGSELE-------VVRTKRVSLKPMDTEEAVLQMDMLGHDFFIYEDAESDGIS 167
Query: 282 IVYKRKAGGYGVI 294
IVY+R G YG+I
Sbjct: 168 IVYRRNDGRYGLI 180
>gi|227903554|ref|ZP_04021359.1| ribosome-associated inhibitor protein Y [Lactobacillus acidophilus
ATCC 4796]
gi|227868441|gb|EEJ75862.1| ribosome-associated inhibitor protein Y [Lactobacillus acidophilus
ATCC 4796]
Length = 195
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 111/206 (53%), Gaps = 21/206 (10%)
Query: 89 RMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFG 148
R++ G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R
Sbjct: 7 RLAVKGESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDH 65
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
+ EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG
Sbjct: 66 SA----KVEVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KG 119
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
V +P + ++ D IVR K + P+ EAI Q++ ++HD
Sbjct: 120 LQDFFVEQPEEEKKPSEFD--------------IVRNKRVSLKPMDPEEAILQMDMLEHD 165
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVI 294
F+ F + ET ++VY+R G YG+I
Sbjct: 166 FFVFEDAETNGTSVVYRRNDGRYGLI 191
>gi|341819881|emb|CCC56090.1| ribosome-associated inhibitor protein Y [Weissella thailandensis
fsh4-2]
Length = 240
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 127/245 (51%), Gaps = 26/245 (10%)
Query: 64 SSFFGPFKQITVMRP--------TKVHTKPLPV---RMSWDGPLSSVKLIIQGKNLELTD 112
++FF ++ +T+ P T K L + + S G ++ ++G+N+E+TD
Sbjct: 4 NAFFFCYQYVTIYLPIGYRNESLTACKIKILGILSYKFSQTGDRIMLEFKVRGENIEITD 63
Query: 113 TVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 169
+ ++E+++ + + + + V+VR S + G F + EVT+ + ++R
Sbjct: 64 AMSEYIEKRISRLERYLNTEASYIARVNVR-SYKEGTF-------KTEVTI-QLPYLLLR 114
Query: 170 AEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQ 229
AE+ +Y ++D VS ++R++RK K K + R KG+ L + + AD +
Sbjct: 115 AEDTQTDMYQTVDFVSDKLERQIRKYKTKVNRKSRE-KGYKGLANTDFMAVDPTTVADAR 173
Query: 230 SEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAG 289
E +D+ ++ IVR K ++ P+ EA+ Q+E + H+F+ F++ ET +VYKR+ G
Sbjct: 174 EAEPEDDGIE--IVRKKHVDLKPMDAEEAVLQMELLGHEFFIFQDAETDLPAVVYKRRDG 231
Query: 290 GYGVI 294
Y ++
Sbjct: 232 KYALL 236
>gi|312109504|ref|YP_003987820.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus sp. Y4.1MC1]
gi|336233897|ref|YP_004586513.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Geobacillus thermoglucosidasius C56-YS93]
gi|311214605|gb|ADP73209.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
sp. Y4.1MC1]
gi|335360752|gb|AEH46432.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacillus
thermoglucosidasius C56-YS93]
Length = 183
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 109/199 (54%), Gaps = 30/199 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I+G+N+E+T ++ +VE+K+GK +++ + V V L V + GK EVT+
Sbjct: 5 IRGENIEVTPALREYVEKKIGKLERYFENTENI-HVHVNLKVYNDKQGK------IEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---P 217
++RAEE + +YA+IDLV+ ++R++RK H NR K+R+
Sbjct: 58 -PMPQLLLRAEERHDDMYAAIDLVADKLERQIRK----------HKTKVNR-KLRDRDKE 105
Query: 218 VTQVVENDADVQSEE--EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
V QV A VQ+ ED+ + IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 106 VKQV----ATVQTNAPAEDNEEEEFEIVRTKHFSLKPMDSEEAILQMNLLGHNFFIFTNA 161
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET NIVY+RK G YG+I
Sbjct: 162 ETNRTNIVYRRKDGKYGLI 180
>gi|415883548|ref|ZP_11545577.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus MGA3]
gi|387591343|gb|EIJ83660.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
methanolicus MGA3]
Length = 184
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 106/194 (54%), Gaps = 19/194 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE+K+ K + ++ +V+V +++R + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVEKKISK-LERYFAETPKVNVHVNLRTY----SDKSAKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VTQ 220
+ V+RAEE E +YA+IDL++ ++R++RK H NR K+RE V
Sbjct: 59 MPNIVLRAEEVHEDMYAAIDLIADKLERQIRK----------HKTKVNR-KLREKGSVNS 107
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+ + + + IVR K F++ P+ EAI Q+ + H+F+ F N ET
Sbjct: 108 LFATMVEEPEAPAAEEENELEIVRQKSFDLKPMDSEEAILQMNLLGHNFFVFTNAETNRT 167
Query: 281 NIVYKRKAGGYGVI 294
NIVYKRK G YG+I
Sbjct: 168 NIVYKRKDGRYGLI 181
>gi|342732929|ref|YP_004771768.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456297|ref|YP_005668894.1| 30S ribosomal protein S30 [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417962234|ref|ZP_12604486.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-2]
gi|417964132|ref|ZP_12605903.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-3]
gi|417964942|ref|ZP_12606575.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-4]
gi|417966274|ref|ZP_12607667.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-5]
gi|417969363|ref|ZP_12610304.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-co]
gi|418015663|ref|ZP_12655228.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373180|ref|ZP_12965271.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330384|dbj|BAK57026.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505998|gb|EGX28292.1| ribosomal subunit interface protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984642|dbj|BAK80318.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380330421|gb|EIA21696.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-3]
gi|380330770|gb|EIA21945.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-2]
gi|380338026|gb|EIA26979.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-co]
gi|380339443|gb|EIA28180.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-4]
gi|380341569|gb|EIA30043.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343214|gb|EIA31619.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-5]
Length = 177
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 116/199 (58%), Gaps = 29/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRC 156
+K++I GKN+E+T +++ + +K+ K ++ +E++ V LSV K +I
Sbjct: 1 MKIVIHGKNIEVTRALEDAINKKLSKL---DNYFSQELEAHVTLSVE-----KNNQI--I 50
Query: 157 EVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + +G+ +RA+E +Y +IDLV + +++R+ K K +K ++ +R
Sbjct: 51 EVGILF--NGIYLRAQERNSDLYIAIDLVVDKLYKQIRRQKTK------LVKKYSNKDIR 102
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ +++N E+D+ D++I+++K F + P+ EAI Q+E + HDFY F N
Sbjct: 103 -SLDILLDN-------IENDDLEDDIIIKVKKFPIKPMYKDEAILQMELIGHDFYVFINA 154
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET ++N++Y+RK+G YG+I
Sbjct: 155 ETNDVNVLYRRKSGNYGLI 173
>gi|315037898|ref|YP_004031466.1| phosphate starvation inducible protein stress related protein
[Lactobacillus amylovorus GRL 1112]
gi|325956371|ref|YP_004291783.1| phosphate starvation inducible protein stress-like protein
[Lactobacillus acidophilus 30SC]
gi|385817252|ref|YP_005853642.1| phosphate starvation inducible protein stress-like protein
[Lactobacillus amylovorus GRL1118]
gi|312276031|gb|ADQ58671.1| putative phosphate starvation inducible protein stress related
protein [Lactobacillus amylovorus GRL 1112]
gi|325332936|gb|ADZ06844.1| phosphate starvation inducible protein stress related protein
[Lactobacillus acidophilus 30SC]
gi|327183190|gb|AEA31637.1| phosphate starvation inducible protein stress-like protein
[Lactobacillus amylovorus GRL1118]
Length = 180
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 108/196 (55%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVLAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V EP
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEEP- 113
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
Q E++ F IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 114 ----------QEEKKPSEFD---IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETN 160
Query: 279 EINIVYKRKAGGYGVI 294
++VY+R G YG+I
Sbjct: 161 GTSVVYRRNDGRYGLI 176
>gi|392530218|ref|ZP_10277355.1| ribosome-associated inhibitor protein Y [Carnobacterium
maltaromaticum ATCC 35586]
gi|414084916|ref|YP_006993627.1| ribosomal subunit interface protein [Carnobacterium maltaromaticum
LMA28]
gi|412998503|emb|CCO12312.1| ribosomal subunit interface protein [Carnobacterium maltaromaticum
LMA28]
Length = 179
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 27/195 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++ +VE+KVGK S + V L V + K EVT+
Sbjct: 6 VRGENIEVTAAIREYVEKKVGKLERYFSDVPDATAHVNLKVYSDKTAK------VEVTV- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV ++R++RK K K + R KGF+ V
Sbjct: 59 PLPYLVLRAEETSPDLYASVDLVVDKLERQMRKYKTKINRKSRE-KGFD---------FV 108
Query: 222 VENDA--DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
V N A DV + E D IVR K + P+ EA+ Q++ + H+F+ F + ET
Sbjct: 109 VPNAAELDVATGELD-------IVRTKRVSLKPMDSEEAVLQMDMLGHNFFIFEDAETNG 161
Query: 280 INIVYKRKAGGYGVI 294
I+IVY+R G YG+I
Sbjct: 162 ISIVYRRTDGKYGLI 176
>gi|402310859|ref|ZP_10829818.1| ribosomal subunit interface protein [Eubacterium sp. AS15]
gi|400366788|gb|EJP19812.1| ribosomal subunit interface protein [Eubacterium sp. AS15]
Length = 173
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +I+ GK + L+ K VE K+ + + +V+VR++ K I EV
Sbjct: 1 MNIILSGKQISLSPKQKATVETKLSRL---EKYFNEDVNVRVT---ASRRKDDSI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ V+RAE +Y ++D V S + ++LRK K K + G F +
Sbjct: 53 TIPVNKN-VIRAEATDSDLYCAVDEVVSKLSKQLRKFKTKLKNRGTETIRFENI------ 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+D+ +++ +E +I R K FE P++ EAI QLE V HDF+ F N +T
Sbjct: 106 -----DDSSIENSKE------SLISRRKKFEFTPMSEEEAILQLELVGHDFFVFVNSDTD 154
Query: 279 EINIVYKRKAGGYGVI 294
IN++YKRK G YG+I
Sbjct: 155 MINVIYKRKDGDYGII 170
>gi|156743010|ref|YP_001433139.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
castenholzii DSM 13941]
gi|156234338|gb|ABU59121.1| sigma 54 modulation protein/ribosomal protein S30EA [Roseiflexus
castenholzii DSM 13941]
Length = 198
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 31/212 (14%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR---- 152
+ + LI+ +N +L+D + H+E+K+ S L R +D R+ E + R
Sbjct: 4 ACMNLIVNSRNGKLSDRQRQHIEQKL-------SRLDRYLD-RIDKVTVEHMEEMRRNEG 55
Query: 153 -IRRCEVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN 210
+ R +VT+ HGV VRAE A +YA+ID V +QR++ + K+K H +
Sbjct: 56 NVHRVQVTV-VGDHGVLVRAERRAPELYAAIDEVYDTLQRQIERYKDK------HWRRGR 108
Query: 211 RLKVREPVTQVVEN-----DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENV 265
+ + + + A + EE+ IVR K F++ P+ EA+EQ+E +
Sbjct: 109 LRRQGGQIVEALPEMNAAAPAPIDEEEQRPR-----IVRTKEFQVKPMYSDEAVEQMELL 163
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
H F+ F++ +TG++N++Y+R+ G YG+I+P+
Sbjct: 164 GHSFFIFQDADTGKLNVLYRRQDGNYGLIVPE 195
>gi|296134262|ref|YP_003641509.1| ribosomal subunit interface protein [Thermincola potens JR]
gi|296032840|gb|ADG83608.1| ribosomal subunit interface protein [Thermincola potens JR]
Length = 173
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL ++GKN+++T +K +VE+++ K + K E V L V + EV
Sbjct: 1 MKLNVRGKNIDVTPALKEYVEKRLSK-LEKFFDNELEAQVTLVVEKD-------THKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +YASIDLV ++R++ K K K R K PV
Sbjct: 53 TMPVNGM-ILRGEEATGDMYASIDLVIEKLERQINKYKTKIMSK--------RTKTGNPV 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+A +ED+ IV+ K F + P+ V EA+ Q+ + H+F+ F N ET
Sbjct: 104 ------EAPAAGADEDE----PRIVKTKRFAIKPMPVDEAVLQMNMLGHNFFVFSNAETE 153
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK G YG+I P+
Sbjct: 154 EVNVVYKRKDGNYGLIEPE 172
>gi|358468154|ref|ZP_09177782.1| ribosomal subunit interface protein [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357065469|gb|EHI75674.1| ribosomal subunit interface protein [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 181
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD +K + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIKKYAEEKISK-VEKFNDSIIKIDANLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDDT 105
Query: 219 TQ-------VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ +VE + V E++ +VR+ + + P+ +SEAI QLE ++ F+
Sbjct: 106 RKKSYSFDYIVEPEEKVSDEKK--------LVRV-YLPLKPMEISEAILQLEYLNRVFFA 156
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F N ETG++ +VYKRK G YGVI
Sbjct: 157 FTNSETGKMAVVYKRKDGDYGVI 179
>gi|322418294|ref|YP_004197517.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M18]
gi|320124681|gb|ADW12241.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter sp.
M18]
Length = 182
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E ++ +K++ EEK+ + V K+ V V L+V +IR T K
Sbjct: 8 RHMEPSEALKSYAEEKLDR-VKKYIDDPIVVQVFLTVE--------KIRHLAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YASID VS I+R+LR+ KE R+K +P E
Sbjct: 59 ITIKAAEETNDMYASIDAVSDKIERQLRRFKE-------------RIKAHKPAADARERQ 105
Query: 226 ---ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
A VQ++ ++ VI++ K F M P++V EA+ Q+E + DF + T IN+
Sbjct: 106 VQKAIVQAQGIEEGTQTPVIIKTKSFTMKPMSVEEAVMQMELLHKDFLVYTESSTETINV 165
Query: 283 VYKRKAGGYGVIIPKG 298
VY+RK G YG+I P+
Sbjct: 166 VYRRKDGNYGLISPEN 181
>gi|147679089|ref|YP_001213304.1| ribosome-associated protein Y [Pelotomaculum thermopropionicum SI]
gi|146275186|dbj|BAF60935.1| ribosome-associated protein Y [Pelotomaculum thermopropionicum SI]
Length = 175
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++G+N+++TD +K++V ++VGK + K+ + V L+V R EV
Sbjct: 1 MKVQVRGRNIDVTDALKDYVVKRVGK-LDKYIDNFGDAQVTLAVE-------KESHRVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +Y SIDLV +++++ K K K G N K P
Sbjct: 53 TIPVNGM-ILRGEESTGDMYTSIDLVVDKLEKQIEKYKGKLLKRGARFT--NDHKTAAPA 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEED +VR K F + P+ V EAI Q+ + H F+ F N ET
Sbjct: 110 V----------PEEEDG----PRLVRTKRFAIKPMPVEEAILQMNLLGHSFFVFSNAETE 155
Query: 279 EINIVYKRKAGGYGVIIPK 297
++N+VY+RK G YG+I P+
Sbjct: 156 QVNVVYRRKDGNYGLIEPE 174
>gi|379737448|ref|YP_005330954.1| 30S ribosomal protein S30P [Blastococcus saxobsidens DD2]
gi|378785255|emb|CCG04928.1| SSU ribosomal protein S30P [Blastococcus saxobsidens DD2]
Length = 228
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 110/212 (51%), Gaps = 23/212 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
++++++G+N+E+ + + HVE+KVG+ + L R +DV L K PR +
Sbjct: 1 MEIVVRGRNVEVPEHYRQHVEDKVGQLERFDTKLSR-IDVELF-----HEKNPRQSASCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLK 213
R E+TL K VVRAE YA++DL S + +LR+ ++ HGR RL
Sbjct: 55 RVEITLRGKG-PVVRAEAAGPDFYAALDLASGKLDNRLRRAADRRRVHHGRRTPASVRLN 113
Query: 214 VRE--------PVTQVVENDADVQSE---EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQL 262
P+ Q ++ D ++ S E D + IVR K P+TV +A+ ++
Sbjct: 114 GAALDAGHSELPIEQQLQLDRELASGPHVTELDEHLPGQIVREKHHPATPMTVDQALHEM 173
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E V HDF+ F+ +TG+ +VY+R A YG+I
Sbjct: 174 ELVGHDFFLFQCADTGQPTVVYRRHAYDYGLI 205
>gi|227486946|ref|ZP_03917262.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227093020|gb|EEI28332.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 225
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 23/226 (10%)
Query: 83 TKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSV 142
TKP D ++++I G+N+E+ + K V K+ K + +D L+
Sbjct: 2 TKPENNETQRDELRPDIQVVITGRNVEVPEHFKERVNTKLAKISV--------LDPTLNY 53
Query: 143 RGGEFGKGPRIRRC------EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK 196
E P RR ++T K H + RAE ++ YA++++ + ++R LRK+K
Sbjct: 54 FHVELKHEPNPRRADRADKIQITATGKGH-IARAEAKEDSFYAALEVALAKMERSLRKVK 112
Query: 197 EKES-DHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNF---VDEV----IVRMKFF 248
+ S H H + + Q E Q + + D + VD+V IVR K
Sbjct: 113 VRRSISHQGHRAPLGAGQQAAKLVQEAEEARSKQEQYDTDPYEGLVDDVLPGQIVRRKEH 172
Query: 249 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P++V +A+ ++E V HDFY F NEETG ++VY+R+A YG+I
Sbjct: 173 PAKPMSVDDALSEMELVGHDFYLFINEETGRPSVVYRRRAFDYGLI 218
>gi|422940054|ref|ZP_16967414.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339890237|gb|EGQ79395.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 195
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
S+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E
Sbjct: 14 SMKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTE 69
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ + ++A +YASID I++ L+K KEK S R K+++
Sbjct: 70 ILAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKIQDD 118
Query: 218 V-TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ D V+ EE+ N ++ +VR+ + + P+ +SEAI QLE ++ F+ F N E
Sbjct: 119 TRKRSYSFDYIVEPEEKLSN--EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSE 175
Query: 277 TGEINIVYKRKAGGYGVI 294
TG + +VYKRK G YGVI
Sbjct: 176 TGNMAVVYKRKDGDYGVI 193
>gi|303235315|ref|ZP_07321933.1| ribosomal subunit interface protein [Finegoldia magna BVS033A4]
gi|417925480|ref|ZP_12568899.1| ribosomal subunit interface protein [Finegoldia magna
SY403409CC001050417]
gi|302493629|gb|EFL53417.1| ribosomal subunit interface protein [Finegoldia magna BVS033A4]
gi|341591106|gb|EGS34314.1| ribosomal subunit interface protein [Finegoldia magna
SY403409CC001050417]
Length = 179
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQVRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T+ ++ E ++N E+ IV+ K F + P+ EAI Q+E +DHDF+ F +
Sbjct: 98 TE----SNSIRFEAVEENSAKEIPTGSIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLD 153
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
+T +N+VYKRK G YG+++P
Sbjct: 154 SKTNNVNVVYKRKDGNYGLLVP 175
>gi|227541892|ref|ZP_03971941.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182335|gb|EEI63307.1| ribosome-associated inhibitor protein Y [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 225
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 23/226 (10%)
Query: 83 TKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSV 142
TKP D ++++I G+N+E+ + K V K+ K + +D L+
Sbjct: 2 TKPENNETQRDELRPDIQVVITGRNVEVPEHFKERVNTKLAKISV--------LDPTLNY 53
Query: 143 RGGEFGKGPRIRRC------EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK 196
E P RR ++T K H + RAE ++ YA++++ + ++R LRK+K
Sbjct: 54 FHVELKHEPNPRRADRADKIQITATGKGH-IARAEAKEDSFYAALEVALAKMERSLRKVK 112
Query: 197 EKES-DHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNF---VDEV----IVRMKFF 248
+ S H H + + Q E Q + + D + VD+V IVR K
Sbjct: 113 VRRSISHQGHRAPLGAGQQAAKLVQEAEEARSKQEQYDTDPYEGLVDDVLPGQIVRRKEH 172
Query: 249 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P++V +A+ ++E V HDFY F NEETG ++VY+R+A YG+I
Sbjct: 173 PAKPMSVDDALSEMELVGHDFYLFINEETGRPSVVYRRRAFDYGLI 218
>gi|118444043|ref|YP_878982.1| ribosomal subunit interface protein [Clostridium novyi NT]
gi|118134499|gb|ABK61543.1| ribosomal subunit interface protein [Clostridium novyi NT]
Length = 178
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 112/198 (56%), Gaps = 28/198 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ GKN+++T+ +++ VE K+ K + K+ EV LSV+ K +I EVT+
Sbjct: 5 VNGKNIQVTEGLRDAVERKLSK-LDKYFDPNVEVITTLSVQ-----KNSQI--VEVTI-- 54
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPVT 219
+GV+ RAE+ +YA+ID+V ++R++RK K K HG +K + +
Sbjct: 55 PFNGVILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKLQRRKHGDALKF-------QFIP 107
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
+ V D D++ ++ IV+ K F + P++ EA+ Q+E + H+F+ F N ET E
Sbjct: 108 EYVPKD--------DEDNIESKIVKTKRFAIKPMSREEAVLQMELLGHNFFVFTNAETEE 159
Query: 280 INIVYKRKAGGYGVIIPK 297
+N++YKRK G YG+I P+
Sbjct: 160 VNVLYKRKDGQYGLIEPE 177
>gi|228476605|ref|ZP_04061287.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius SK126]
gi|340398184|ref|YP_004727209.1| ribosomal subunit interface protein, 30S ribosomal protein S30AE
family [Streptococcus salivarius CCHSS3]
gi|387761950|ref|YP_006068927.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius 57.I]
gi|387783447|ref|YP_006069530.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius JIM8777]
gi|418017206|ref|ZP_12656765.1| ribosomal subunit interface protein, 30S ribosomal protein S30AE
family [Streptococcus salivarius M18]
gi|421451738|ref|ZP_15901099.1| Ribosome-associated factor Y [Streptococcus salivarius K12]
gi|228251800|gb|EEK10865.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius SK126]
gi|338742177|emb|CCB92682.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius CCHSS3]
gi|338744329|emb|CCB94695.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius JIM8777]
gi|339292717|gb|AEJ54064.1| ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius 57.I]
gi|345527899|gb|EGX31207.1| ribosomal subunit interface protein, 30S ribosomal protein S30AE
family [Streptococcus salivarius M18]
gi|400182169|gb|EJO16431.1| Ribosome-associated factor Y [Streptococcus salivarius K12]
Length = 182
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 114/199 (57%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ + +E++ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFNEDQELNARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TIPTGS-VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIARKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+V AD +E+ ++ EV VR K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 107 GEVF--SADFNNEQVEEAPAVEV-VRTKNIELKPMDVEEAILQMELLGHDFFIYTDSEDH 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++YKR+ G YG+I K
Sbjct: 164 TTNVLYKREDGNYGLIEAK 182
>gi|75759029|ref|ZP_00739137.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218900308|ref|YP_002448719.1| ribosomal subunit interface protein [Bacillus cereus G9842]
gi|228903662|ref|ZP_04067782.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 4222]
gi|228911022|ref|ZP_04074830.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 200]
gi|228968290|ref|ZP_04129288.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402563212|ref|YP_006605936.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-771]
gi|423362974|ref|ZP_17340474.1| ribosomal subunit interface protein [Bacillus cereus VD022]
gi|434378305|ref|YP_006612949.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-789]
gi|74493495|gb|EAO56603.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218543998|gb|ACK96392.1| ribosomal subunit interface protein [Bacillus cereus G9842]
gi|228791463|gb|EEM39067.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228848677|gb|EEM93523.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 200]
gi|228855930|gb|EEN00470.1| Ribosome-associated factor Y [Bacillus thuringiensis IBL 4222]
gi|401076725|gb|EJP85076.1| ribosomal subunit interface protein [Bacillus cereus VD022]
gi|401791864|gb|AFQ17903.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-771]
gi|401876862|gb|AFQ29029.1| ribosomal subunit interface protein [Bacillus thuringiensis HD-789]
Length = 180
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V ++ + E VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 EAVAVMDEVEEDELEL---------VRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|293375589|ref|ZP_06621863.1| ribosomal subunit interface protein [Turicibacter sanguinis PC909]
gi|292645806|gb|EFF63842.1| ribosomal subunit interface protein [Turicibacter sanguinis PC909]
Length = 182
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 113/202 (55%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVG--KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+++ I+G N +T+ +KN++E+KVG + L ++ ++++ R+ ++ + I++
Sbjct: 1 MRIQIRGANRFVVTEAIKNYIEDKVGSLQRFLPNN---QDLEARVYIKIYDV-----IQK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV- 214
EVT+ ++RAEE+ + +YA+IDLV ++R++R+ K K + R +G + V
Sbjct: 53 VEVTI-PGNQFILRAEEENDDLYAAIDLVVDKLERQIRRNKTKANKKIREREGISDYFVT 111
Query: 215 --REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
PVT Q+E DEV ++K + P+ V EAI QL+ + HDFY +
Sbjct: 112 VDDTPVTH--------QAE-------DEVPYKVKNVHLKPMDVEEAIMQLDLLGHDFYVY 156
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
R+ + +VY+RK G YGVI
Sbjct: 157 RDMAVDAVCVVYRRKDGKYGVI 178
>gi|306821519|ref|ZP_07455120.1| ribosomal subunit interface protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550445|gb|EFM38435.1| ribosomal subunit interface protein [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 173
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ +I+ GK + L+ K VE K+ + + +V+VR++ K I EV
Sbjct: 1 MNIILSGKQISLSPKQKATVETKLSRL---EKYFNEDVNVRVT---ASRRKDDSI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K+ V+RAE +Y ++D V S + ++LRK K K + G F +
Sbjct: 53 TIPVNKN-VIRAEATDSDLYCAVDEVVSKLSKQLRKFKTKLKNRGTETIRFENI------ 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+D+ +++ +E +I R K FE P++ EAI QLE V HDF+ F N +T
Sbjct: 106 -----DDSSIENPKE------SLISRRKKFEFTPMSEEEAILQLELVGHDFFVFVNSDTD 154
Query: 279 EINIVYKRKAGGYGVI 294
IN++YKRK G YG+I
Sbjct: 155 MINVIYKRKDGDYGII 170
>gi|300853465|ref|YP_003778449.1| ribosome-associated protein [Clostridium ljungdahlii DSM 13528]
gi|300433580|gb|ADK13347.1| predicted ribosome-associated protein [Clostridium ljungdahlii DSM
13528]
Length = 175
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 43/207 (20%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-------VLKHSHLVREVDVRLSVRGGEFGKGP 151
+K+ ++GKN+ +TD +KN VE+K+ K V+ H+ L SV+ K
Sbjct: 1 MKITVKGKNIVVTDALKNAVEKKLCKLEKYFNPDVVAHATL--------SVQ-----KTR 47
Query: 152 RIRRCEVTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF 209
+I EVT+ F GV+ R EE +YASIDLV ++R++RK K K ++
Sbjct: 48 QI--IEVTIPFG---GVILRGEEGNSDMYASIDLVVDKLERQIRKQKTK------LLRRN 96
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDF 269
N +R Q + ++++ +E+ IVR K F + P++ EA+ Q+E + H F
Sbjct: 97 NSESLR---FQCIPDESEKDEQEQK-------IVRTKKFAIKPMSSEEAVLQMELLGHSF 146
Query: 270 YGFRNEETGEINIVYKRKAGGYGVIIP 296
+ +++ E GE+N+VYKR+ G YG+I P
Sbjct: 147 FVYQDAENGEVNVVYKRRDGNYGLIEP 173
>gi|253575892|ref|ZP_04853226.1| ribosomal subunit interface protein [Paenibacillus sp. oral taxon
786 str. D14]
gi|251844686|gb|EES72700.1| ribosomal subunit interface protein [Paenibacillus sp. oral taxon
786 str. D14]
Length = 183
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 34/201 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--------VRLSVRGGEFGKGPRIR 154
I+G+ +E+T+ ++++V++K+ S L + D V LSV G +
Sbjct: 5 IRGQQIEVTEALRDYVDKKL-------SRLDKYFDAPPTSDGTVTLSVVRG-------LH 50
Query: 155 RCEVTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
EVT+ GVV RAE+ ++ +YASID V ++R++RK K K + R N L
Sbjct: 51 AVEVTI--PLTGVVLRAEDRSDDMYASIDAVVDKLERQIRKHKTKINRKLRQKGVKNSLF 108
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
V + T V D + EEE + +VR K F + P+ V EAI Q+ V H+F+ F
Sbjct: 109 VEDATTGSVALD---EGEEELE------VVRTKRFTLKPMDVEEAILQMNMVGHNFFVFS 159
Query: 274 NEETGEINIVYKRKAGGYGVI 294
N +T E+N+VYKR G YG+I
Sbjct: 160 NIDTKEVNVVYKRNDGKYGLI 180
>gi|160946865|ref|ZP_02094068.1| hypothetical protein PEPMIC_00826 [Parvimonas micra ATCC 33270]
gi|343520633|ref|ZP_08757602.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 393
str. F0440]
gi|158447249|gb|EDP24244.1| ribosomal subunit interface protein [Parvimonas micra ATCC 33270]
gi|343397591|gb|EGV10125.1| ribosomal subunit interface protein [Parvimonas sp. oral taxon 393
str. F0440]
Length = 174
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL GKN+E+T+ +K +K K ++++ +++ K +I E
Sbjct: 1 MKLQFIGKNIEVTNALKEITAKKFEKL---DKFFSKDIEGKVTYSAV---KNDKI--FEA 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T++ ++RAEE +Y SID+V ++R++RK K K + ++ K+ EP+
Sbjct: 53 TIYLPNSTILRAEESTNDMYTSIDIVLDNLERQIRKNKTKLQKKYQALETIRFEKIAEPL 112
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE+ IVR+K F++ ++ EAI Q+E ++HDF+ F+N +
Sbjct: 113 ------------EEEESK-----IVRVKKFDVATMSEEEAILQIELLNHDFFIFKNAKDY 155
Query: 279 EINIVYKRKAGGYGVIIP 296
+ N++YKRK G YG+II
Sbjct: 156 KTNVLYKRKDGNYGLIIA 173
>gi|206970023|ref|ZP_03230976.1| ribosomal subunit interface protein [Bacillus cereus AH1134]
gi|228955433|ref|ZP_04117438.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229072642|ref|ZP_04205844.1| Ribosome-associated factor Y [Bacillus cereus F65185]
gi|229082401|ref|ZP_04214864.1| Ribosome-associated factor Y [Bacillus cereus Rock4-2]
gi|229181450|ref|ZP_04308778.1| Ribosome-associated factor Y [Bacillus cereus 172560W]
gi|229193436|ref|ZP_04320383.1| Ribosome-associated factor Y [Bacillus cereus ATCC 10876]
gi|365162861|ref|ZP_09358985.1| ribosomal subunit interface protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|423411069|ref|ZP_17388189.1| ribosomal subunit interface protein [Bacillus cereus BAG3O-2]
gi|423427279|ref|ZP_17404310.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-2]
gi|423433146|ref|ZP_17410150.1| ribosomal subunit interface protein [Bacillus cereus BAG4O-1]
gi|423438589|ref|ZP_17415570.1| ribosomal subunit interface protein [Bacillus cereus BAG4X12-1]
gi|423506929|ref|ZP_17483518.1| ribosomal subunit interface protein [Bacillus cereus HD73]
gi|449092247|ref|YP_007424688.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|206734600|gb|EDZ51769.1| ribosomal subunit interface protein [Bacillus cereus AH1134]
gi|228589968|gb|EEK47840.1| Ribosome-associated factor Y [Bacillus cereus ATCC 10876]
gi|228602025|gb|EEK59518.1| Ribosome-associated factor Y [Bacillus cereus 172560W]
gi|228700833|gb|EEL53356.1| Ribosome-associated factor Y [Bacillus cereus Rock4-2]
gi|228710618|gb|EEL62591.1| Ribosome-associated factor Y [Bacillus cereus F65185]
gi|228804225|gb|EEM50839.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|363617589|gb|EHL68976.1| ribosomal subunit interface protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|401108085|gb|EJQ16017.1| ribosomal subunit interface protein [Bacillus cereus BAG3O-2]
gi|401109464|gb|EJQ17388.1| ribosomal subunit interface protein [Bacillus cereus BAG3X2-2]
gi|401113058|gb|EJQ20930.1| ribosomal subunit interface protein [Bacillus cereus BAG4O-1]
gi|401116204|gb|EJQ24046.1| ribosomal subunit interface protein [Bacillus cereus BAG4X12-1]
gi|402445740|gb|EJV77608.1| ribosomal subunit interface protein [Bacillus cereus HD73]
gi|449026004|gb|AGE81167.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 180
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|424715324|ref|YP_007016039.1| Uncharacterized protein SE_0534 [Listeria monocytogenes serotype 4b
str. LL195]
gi|424014508|emb|CCO65048.1| Uncharacterized protein SE_0534 [Listeria monocytogenes serotype 4b
str. LL195]
Length = 232
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 13/207 (6%)
Query: 88 VRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEF 147
+ + G ++ +K I+G+N+E+T+ ++++VE+K+ K + D + V +
Sbjct: 36 ILFYFKGGIAMLKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVY 92
Query: 148 GKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK 207
+ + EVT+ + V+RAEE + +YASIDL+ ++R++RK K K + R K
Sbjct: 93 S--DKNAKVEVTI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-K 148
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDH 267
G R + + EE + +F D IVR K F + P+ EA+ Q+ + H
Sbjct: 149 GAER-----DYFAYSDVNGSTPPEENEGDF-DLEIVRTKQFSLKPMDSEEAVLQMNLLGH 202
Query: 268 DFYGFRNEETGEINIVYKRKAGGYGVI 294
FY + + ET NIVY RK G YG+I
Sbjct: 203 SFYVYTDAETNGTNIVYSRKDGKYGLI 229
>gi|423613303|ref|ZP_17589163.1| ribosomal subunit interface protein [Bacillus cereus VD107]
gi|401242465|gb|EJR48840.1| ribosomal subunit interface protein [Bacillus cereus VD107]
Length = 180
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 27/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK H NR K+RE
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRK----------HKTKVNR-KLREK 99
Query: 218 VTQVVEND---ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ V+N+ + + ++ + +VR K F++ P+ V EAI Q++ + H+F+ F N
Sbjct: 100 GS--VKNNFILPEAVAVLDEVEEDELELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTN 157
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T E N+VY RK G YG+I
Sbjct: 158 ADTNETNVVYGRKDGKYGLI 177
>gi|217967793|ref|YP_002353299.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Dictyoglomus turgidum DSM 6724]
gi|217336892|gb|ACK42685.1| sigma 54 modulation protein/ribosomal protein S30EA [Dictyoglomus
turgidum DSM 6724]
Length = 179
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 104/191 (54%), Gaps = 24/191 (12%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
KN+ +T+ ++ + E+K+ K + + + ++V S ++ G + R EVTL K +
Sbjct: 8 KNVNITENLQEYAEKKLSK-LSRFFDNIENIEVVFS--EEDWRDGSKRHRVEVTL--KAN 62
Query: 166 G-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
G +++A E + +S+DLV ++ +L+K+KEK D GR + + + E + E
Sbjct: 63 GKIIKASEANQDFRSSVDLVVDKLEAQLKKLKEKLVDKGRRTESIRGILIEETKEEKPE- 121
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
+V++K F + P+ + EAI Q+E + HDF+ FR+ ET +I +VY
Sbjct: 122 -----------------VVKVKRFLLKPMDLEEAILQMELLGHDFFIFRDAETDKIEVVY 164
Query: 285 KRKAGGYGVII 295
KRK G YG+I+
Sbjct: 165 KRKDGKYGLIV 175
>gi|397632968|gb|EJK70774.1| hypothetical protein THAOC_07839 [Thalassiosira oceanica]
Length = 139
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 72/112 (64%), Gaps = 6/112 (5%)
Query: 190 RKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVD---EVIVRMK 246
RKLRK KE+ D G H G N + V +E + DV +E+D FVD VI ++K
Sbjct: 29 RKLRKYKERRLD-GYH-GGPNMGENLADVLNSIEVEDDVAVPQEEDAFVDPEQAVITKVK 86
Query: 247 FFEM-PPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
F++ P+++ EAI L+ +DHDFY FR+EE+ ++++VYKR AGG G+I P+
Sbjct: 87 SFDLSKPISIKEAIFALDYIDHDFYVFRDEESNDVSVVYKRNAGGVGLIQPE 138
>gi|30023223|ref|NP_834854.1| sigma (54) modulation protein / SSU ribosomal protein S30P
[Bacillus cereus ATCC 14579]
gi|218234476|ref|YP_002369963.1| ribosomal subunit interface protein [Bacillus cereus B4264]
gi|228923913|ref|ZP_04087190.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228961425|ref|ZP_04123038.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229050849|ref|ZP_04194401.1| Ribosome-associated factor Y [Bacillus cereus AH676]
gi|229112596|ref|ZP_04242133.1| Ribosome-associated factor Y [Bacillus cereus Rock1-15]
gi|229130434|ref|ZP_04259391.1| Ribosome-associated factor Y [Bacillus cereus BDRD-Cer4]
gi|229147718|ref|ZP_04276061.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST24]
gi|229153343|ref|ZP_04281521.1| Ribosome-associated factor Y [Bacillus cereus m1550]
gi|296505609|ref|YP_003667309.1| sigma (54) modulation protein/SSU ribosomal protein S30P [Bacillus
thuringiensis BMB171]
gi|423583337|ref|ZP_17559448.1| ribosomal subunit interface protein [Bacillus cereus VD014]
gi|423589007|ref|ZP_17565093.1| ribosomal subunit interface protein [Bacillus cereus VD045]
gi|423631932|ref|ZP_17607679.1| ribosomal subunit interface protein [Bacillus cereus VD154]
gi|423633968|ref|ZP_17609621.1| ribosomal subunit interface protein [Bacillus cereus VD156]
gi|423644341|ref|ZP_17619958.1| ribosomal subunit interface protein [Bacillus cereus VD166]
gi|423651029|ref|ZP_17626599.1| ribosomal subunit interface protein [Bacillus cereus VD169]
gi|423658102|ref|ZP_17633401.1| ribosomal subunit interface protein [Bacillus cereus VD200]
gi|29898783|gb|AAP12055.1| Probable Sigma (54) modulation protein / SSU ribosomal protein S30P
[Bacillus cereus ATCC 14579]
gi|218162433|gb|ACK62425.1| ribosomal subunit interface protein [Bacillus cereus B4264]
gi|228629947|gb|EEK86598.1| Ribosome-associated factor Y [Bacillus cereus m1550]
gi|228635731|gb|EEK92218.1| Ribosome-associated factor Y [Bacillus cereus BDRD-ST24]
gi|228653029|gb|EEL08910.1| Ribosome-associated factor Y [Bacillus cereus BDRD-Cer4]
gi|228670976|gb|EEL26283.1| Ribosome-associated factor Y [Bacillus cereus Rock1-15]
gi|228722505|gb|EEL73898.1| Ribosome-associated factor Y [Bacillus cereus AH676]
gi|228798239|gb|EEM45239.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228835712|gb|EEM81076.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|296326661|gb|ADH09589.1| sigma (54) modulation protein/SSU ribosomal protein S30P [Bacillus
thuringiensis BMB171]
gi|401209397|gb|EJR16156.1| ribosomal subunit interface protein [Bacillus cereus VD014]
gi|401225395|gb|EJR31944.1| ribosomal subunit interface protein [Bacillus cereus VD045]
gi|401263154|gb|EJR69287.1| ribosomal subunit interface protein [Bacillus cereus VD154]
gi|401271406|gb|EJR77423.1| ribosomal subunit interface protein [Bacillus cereus VD166]
gi|401280349|gb|EJR86270.1| ribosomal subunit interface protein [Bacillus cereus VD169]
gi|401281874|gb|EJR87779.1| ribosomal subunit interface protein [Bacillus cereus VD156]
gi|401288354|gb|EJR94107.1| ribosomal subunit interface protein [Bacillus cereus VD200]
Length = 180
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSIKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|409387489|ref|ZP_11239704.1| Ribosomal subunit interface protein [Lactococcus raffinolactis
4877]
gi|399205375|emb|CCK20619.1| Ribosomal subunit interface protein [Lactococcus raffinolactis
4877]
Length = 183
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 110/199 (55%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+TD+++++VEEK+ K ++ L V++++ + +
Sbjct: 2 IKFNIRGENIEVTDSIRSYVEEKISKLEKYFTENQELTAYVNLKVY--------AEKTSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K+ +RAE+ ++ +Y S+DLV ++R++RK K K H+
Sbjct: 54 VEVTI-PAKNITLRAEDTSQELYGSVDLVQEKLERQIRKYKTKVQKKRNHI--------- 103
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+V E D+ + EE+ + IVR K ++ P+ EA+ Q++ +DHDF+ F +
Sbjct: 104 -ATGKVFEIFVDL-APEEEIEESNIEIVRTKNIDLKPMDAEEAVLQMDLIDHDFFIFTDG 161
Query: 276 ETGEINIVYKRKAGGYGVI 294
ETG +IVY+R+ G G+I
Sbjct: 162 ETGATSIVYRREDGNIGLI 180
>gi|220927826|ref|YP_002504735.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Clostridium cellulolyticum H10]
gi|219998154|gb|ACL74755.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
cellulolyticum H10]
Length = 176
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 34/204 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CE 157
+ +II GKN+E+T+ ++ V +KV K + K + EV V LSV+ R+ + E
Sbjct: 1 MNIIISGKNIEITEALREKVTKKV-KKLEKFFNSDTEVHVTLSVQ--------RVSQIVE 51
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+T+ +GV +RAE+ E +Y SID V +I+R++RK K + + H F
Sbjct: 52 ITI--PFNGVTLRAEDQNEDMYTSIDRVIDLIERQIRKNKTR-LERRLHDHDFK------ 102
Query: 217 PVTQVVENDA---DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
V+N DVQ E E +VR K F + P+ V EAI Q+ + H+F+ F
Sbjct: 103 -----VDNSKFTYDVQEETEFK------VVRSKRFAVKPMDVEEAILQMNLLGHEFFMFY 151
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N ++ ++N+VYKRK G YG+I P+
Sbjct: 152 NADSRQVNVVYKRKDGNYGLIEPE 175
>gi|258517066|ref|YP_003193288.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Desulfotomaculum acetoxidans DSM 771]
gi|257780771|gb|ACV64665.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum acetoxidans DSM 771]
Length = 177
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 25/197 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+++T +K++VE+++ K ++ E V + V R EVT+
Sbjct: 5 VRGRNIQVTPALKDYVEKRLSKMDKFADNYHFGEAQVTMKVE-------KESHRVEVTIP 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
++R EE +Y+SIDLV +++++ + K K S GR + G V V
Sbjct: 58 VNGM-ILRGEETTGDMYSSIDLVVEKLEKQINRFKGKLSRRGRALNG---------VPYV 107
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E A V + I+R K F M P++V EA+ Q+ + H F+ F N ++ N
Sbjct: 108 SETQAAVDDDAPK-------ILRNKRFNMKPMSVEEAVLQMNLLGHSFFVFSNADSDRAN 160
Query: 282 IVYKRKAGGYGVIIPKG 298
+VYKRK G YG+I P+
Sbjct: 161 VVYKRKDGNYGLIEPEA 177
>gi|329769497|ref|ZP_08260907.1| hypothetical protein HMPREF0433_00671 [Gemella sanguinis M325]
gi|328838712|gb|EGF88310.1| hypothetical protein HMPREF0433_00671 [Gemella sanguinis M325]
Length = 181
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 113/196 (57%), Gaps = 28/196 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + K+ E +V + + + K ++ E+T+
Sbjct: 6 VRGENLEITQPIREYVENKVSK-LEKYFADSLEANVYANAKVYKNNK----KKIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K GV +RAEE E +YA++DL ++R++RK K K + GR KGF
Sbjct: 61 K--GVTLRAEETNEDLYAAVDLAVDKLERQMRKHKTKINRKGRE-KGFV----------- 106
Query: 222 VENDADVQSEEEDDNFVDEVIV---RMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
N+ + SE ED V+E V ++K ++ +T EA+ Q+E + HDF+ F +++TG
Sbjct: 107 --NENLLTSELED---VEEPSVNLGKVKQLKVEVMTREEAVFQMELLGHDFFAFLDDKTG 161
Query: 279 EINIVYKRKAGGYGVI 294
E++IVYKR+ GYGV+
Sbjct: 162 EVSIVYKRRDTGYGVL 177
>gi|407472787|ref|YP_006787187.1| ribosomal subunit interface protein [Clostridium acidurici 9a]
gi|407049295|gb|AFS77340.1| ribosomal subunit interface protein [Clostridium acidurici 9a]
Length = 176
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 111/200 (55%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I GK +E+TD +K ++EK + + K+ H V+V LSV+ KG +I E
Sbjct: 1 MKLTISGKQMEVTDALKVVIDEKFER-LDKYFHKEIPVNVTLSVQ-----KGRQI--VEA 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F+ ++RAEE +YASID V +++R++RK K K R K ++
Sbjct: 53 TIPFS--GAMLRAEEATPDMYASIDKVIDVLERQVRKHKTKLQ---RRTKAGETIRFEN- 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
QV+ + D +S+ IV+ K F + P+ EAI Q+E + H+F+ + + +T
Sbjct: 107 -IQVLPYNEDEESK----------IVKTKKFTIKPMDEEEAILQMELLRHNFFVYIDGQT 155
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+ +VYKRK G YG+I P+
Sbjct: 156 DEVKVVYKRKDGNYGLIEPQ 175
>gi|399924829|ref|ZP_10782187.1| SSU ribosomal protein S30P [Peptoniphilus rhinitidis 1-13]
Length = 175
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 23/190 (12%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+ELT+++KN E+K K + EV+ R+ F + EVT+F K
Sbjct: 7 GKNIELTESLKNVAEKKFSKL---DKYFSEEVEARVV-----FSTVREEQTVEVTIFLPK 58
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE + +Y+SID + R++RK K K K N +R +++E
Sbjct: 59 -TIIRAEETTDDMYSSIDQAVDALARQIRKHKTK-----LKRKYQNNESIR--FDEIMER 110
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
+ D +EE +N IV+ K FE+ P++ EA+ Q+E ++H+F+ F + ++ + IVY
Sbjct: 111 EKD---QEEPEN----KIVKRKNFELNPMSEEEAVLQMELLNHNFFVFLDADSERVAIVY 163
Query: 285 KRKAGGYGVI 294
KRK G YG I
Sbjct: 164 KRKDGNYGKI 173
>gi|322373963|ref|ZP_08048498.1| ribosomal subunit interface protein [Streptococcus sp. C150]
gi|419707524|ref|ZP_14235007.1| Ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius PS4]
gi|321277335|gb|EFX54405.1| ribosomal subunit interface protein [Streptococcus sp. C150]
gi|383282674|gb|EIC80655.1| Ribosomal subunit interface protein, ribosomal protein S30AE family
[Streptococcus salivarius PS4]
Length = 182
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 115/203 (56%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ + +E++ R++++ GK ++ EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVENKLSK-IEKYFNEDQELNARVNLKIYR-GKTAKV---EV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T ++RAE+ ++ +Y SIDLV I+R++RK K K + K RE V
Sbjct: 57 TIPTGS-VILRAEDISQDMYGSIDLVVDKIERQIRKNKTKIA-----------RKHREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ D EE V+E +VR K E+ P+ V EAI Q+E + HDF+ + +
Sbjct: 105 STGEVFSVDFNKEE-----VEEAPSIEVVRTKNIELKPMDVEEAILQMELLSHDFFIYAD 159
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E N++YKR+ G YG+I K
Sbjct: 160 SEDHTTNVLYKREDGNYGLIEAK 182
>gi|258645334|ref|ZP_05732803.1| ribosomal subunit interface protein [Dialister invisus DSM 15470]
gi|260402683|gb|EEW96230.1| ribosomal subunit interface protein [Dialister invisus DSM 15470]
Length = 177
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L ++GKNLE+T+ ++ +VE+ GK + + + + + +R K CEV
Sbjct: 1 MELTVRGKNLEITEALRTYVEKHTGKI---QRYFDKPIKINVLLRISNMTKT-----CEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T F GV+ R E ++ +Y SIDLV ++R++ K K + + + N+
Sbjct: 53 TAFV--DGVILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLAKRFKESNVLNK------ 104
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
Q V V E E + IVR K F + P++ EAI Q+ + H+F+ F N ET
Sbjct: 105 --QFVSEKESVPGESEFE------IVRQKRFTINPMSPEEAILQMNLLGHNFFMFFNSET 156
Query: 278 GEINIVYKRKAGGYGVI 294
+ +VY+R G YG+I
Sbjct: 157 EAMAVVYRRDDGKYGLI 173
>gi|375089824|ref|ZP_09736149.1| ribosomal subunit interface protein [Facklamia languida CCUG 37842]
gi|374566671|gb|EHR37910.1| ribosomal subunit interface protein [Facklamia languida CCUG 37842]
Length = 190
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++ + E++V K + + V L V + K EVT+
Sbjct: 6 VRGENIEVTQAIREYAEKRVSKLEKYFTDVPNATAYVNLKVYPDKTAK------AEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE +YASID V ++R++RK K K + R KGF E + +
Sbjct: 59 PLSFLVLRAEETTPDLYASIDFVVDKLERQVRKYKTKINRKSRE-KGF------EGINEA 111
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ D E++D D IVR K + P+ EA+ Q+ + HDF+ F++ E+ EI+
Sbjct: 112 IGPDKVEVKEDQDTQESDLKIVRSKHIHLKPMDSEEAVLQMNMLGHDFFVFKDAESDEIH 171
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 172 IVYRRKDGRYGLI 184
>gi|333372656|ref|ZP_08464580.1| ribosomal subunit interface protein [Desmospora sp. 8437]
gi|332971718|gb|EGK10666.1| ribosomal subunit interface protein [Desmospora sp. 8437]
Length = 215
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 113/204 (55%), Gaps = 26/204 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K ++G N+E+T ++++V +K+G+ + K+ S E +V L V E +
Sbjct: 33 MKYNVRGNNIEVTAALRDYVVKKLGR-LEKYFDSTAATEANVSLGVFRDE-------HKV 84
Query: 157 EVTL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ F +VRAEE +E +YASID V ++R++RK K K NR +
Sbjct: 85 EVTVPFPGL--LVRAEEASENMYASIDKVVEKLERQIRKYKTK----------VNRKFRQ 132
Query: 216 EPVTQVVENDA--DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+ + ++N +++ + DD EV VR K F + P+ EAI Q++ + H+FY F
Sbjct: 133 DGTIRNLDNGITPELEMDRSDDGGEFEV-VRTKRFNLKPMDAEEAILQMDLLGHNFYVFS 191
Query: 274 NEETGEINIVYKRKAGGYGVIIPK 297
N T ++N+VYKRK G YG+I P+
Sbjct: 192 NAVTDQVNVVYKRKDGRYGLIEPE 215
>gi|126652455|ref|ZP_01724627.1| ribosomal subunit interface protein [Bacillus sp. B14905]
gi|126590726|gb|EAZ84841.1| ribosomal subunit interface protein [Bacillus sp. B14905]
Length = 183
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + +V+ +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVENKIEKV---ERYFNEDVNANANVNLKVYN--DKQTKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE +YA++DL+ ++R++RK K K + R +G + TQ V
Sbjct: 60 MKNLTLRAEERHNDMYAAVDLIVDKLERQIRKHKTKVNRKFREREG---AGLYFATTQAV 116
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
D +EE+ + IVR K F++ P+ EA+ Q+ + HDFY F + E+ NI
Sbjct: 117 ---VDTTLDEEEYS-----IVRTKQFDLKPMDQEEAVLQMNMLGHDFYVFTDAESNGTNI 168
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 169 VYKRKDGKYGLI 180
>gi|329768615|ref|ZP_08260100.1| hypothetical protein HMPREF0428_01797 [Gemella haemolysans M341]
gi|328836448|gb|EGF86111.1| hypothetical protein HMPREF0428_01797 [Gemella haemolysans M341]
Length = 181
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 111/193 (57%), Gaps = 22/193 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + K+ E +V + + + K ++ E+T+
Sbjct: 6 VRGENLEITQAIREYVENKVSK-LEKYFADSLEANVYANAKVYKNNK----KKIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K GV +RAEE E +YA++DLV ++R++RK K K + GR KGF V
Sbjct: 61 K--GVTLRAEETNEDLYAAVDLVVDKLERQMRKHKTKINRKGRE-KGF-----------V 106
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
EN + EE ++ +D ++K ++ P+T EA+ Q+E + HDF+ F + T EI+
Sbjct: 107 EENLLTNELEEAEETTLD--FGKVKQLKVEPMTREEAVFQMELLGHDFFAFLDSNTNEIS 164
Query: 282 IVYKRKAGGYGVI 294
+VYKR+ GYGV+
Sbjct: 165 VVYKRRDTGYGVL 177
>gi|373454576|ref|ZP_09546442.1| ribosomal subunit interface protein [Dialister succinatiphilus YIT
11850]
gi|371935851|gb|EHO63594.1| ribosomal subunit interface protein [Dialister succinatiphilus YIT
11850]
Length = 178
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 28/199 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L ++GKNLE+TD + ++VE+ GK + + + + + +R K CEV
Sbjct: 1 MELTVRGKNLEITDALHSYVEKHTGKI---QRYFDKPIKINVLLRISNMTKT-----CEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F G++ R E ++ +Y SIDLV ++R++ K K + + R K R
Sbjct: 53 TVFVD--GIILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLA---------KRFKERNT 101
Query: 218 VTQ--VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
++ V+E +A + E + IV+ K F + P++ EA+ Q+ + H F+ F N
Sbjct: 102 LSHQFVMEKEAASAPDTEFE------IVKTKHFNISPMSPEEAVLQMNLLGHSFFMFFNS 155
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET + +VY+R G YG+I
Sbjct: 156 ETEAMAVVYRRDDGKYGLI 174
>gi|340355248|ref|ZP_08677940.1| ribosomal subunit interface protein [Sporosarcina newyorkensis
2681]
gi|339622688|gb|EGQ27203.1| ribosomal subunit interface protein [Sporosarcina newyorkensis
2681]
Length = 186
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 105/195 (53%), Gaps = 20/195 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I+G+N+E+T ++ +VE+K+ K + ++ V++++ + + EVT
Sbjct: 6 IRGENVEVTPAIREYVEKKIQKLERYFTEGANATAHVNLKVY--------NDKQTKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ K+ +RAEE +YA++DL+ ++R++RK K + + R +G
Sbjct: 58 I-PMKNLTLRAEERHSDMYAAVDLIVDKLERQIRKYKTRVNRKSREREGV------AAFF 110
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
Q VE+ + Q +DD D +VR K F++ P+ EAI Q+ + H+F+ F + E+
Sbjct: 111 QSVEDSNNTQESLDDDQ--DFNVVRTKQFDLKPMDQEEAILQMNMLGHNFFIFTDAESDG 168
Query: 280 INIVYKRKAGGYGVI 294
NIVYKRK G YG+I
Sbjct: 169 TNIVYKRKDGRYGLI 183
>gi|332686411|ref|YP_004456185.1| ribosomal subunit interface protein [Melissococcus plutonius ATCC
35311]
gi|332370420|dbj|BAK21376.1| ribosomal subunit interface protein [Melissococcus plutonius ATCC
35311]
Length = 184
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++N++E+KVGK + V V L V + K EVT+
Sbjct: 8 VRGENIEVTEAIRNYIEKKVGKLERYFNDSPVATVHANLKVYTEKTAK------VEVTI- 60
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K + + R G + K V
Sbjct: 61 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTRINRKSRET-GIDTAK-----ASV 114
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
ND + + D IVR K + P+ EA+ Q+ + H+F+ F + ET +
Sbjct: 115 FLNDEGTEDPTDLD------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDSETNGTS 168
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 169 IVYRRKDGKYGLI 181
>gi|385266426|ref|ZP_10044513.1| Sigma 54 modulation protein / S30EA ribosomal protein [Bacillus sp.
5B6]
gi|385150922|gb|EIF14859.1| Sigma 54 modulation protein / S30EA ribosomal protein [Bacillus sp.
5B6]
Length = 188
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 99/199 (49%), Gaps = 22/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKVREP 217
+R+E E +Y +IDL ++ ++R++RK + K D G F
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFRDQGLPKHYFEN------ 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V + VQ E EDD+ IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 112 -GSVADTGVAVQDEIEDDS---PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTNAET 167
Query: 278 GEINIVYKRKAGGYGVIIP 296
N+VY+R G YG+I P
Sbjct: 168 NLTNVVYRRNDGKYGLIEP 186
>gi|425733662|ref|ZP_18851982.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Brevibacterium casei S18]
gi|425482102|gb|EKU49259.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Brevibacterium casei S18]
Length = 224
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 22/214 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI-RRCE 157
+ +++ G+ L ++D+ + H+E+K+ K R V + V + + P R E
Sbjct: 1 MDIVVTGRQLTISDSFRAHIEDKIAKV---EQLAPRAQRVEVHVAHDKNTRQPETSERVE 57
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE--KESDHGRHMK-----GFN 210
+T+ K V+RAE A YA++DL + + +LR+ ++ K S G H K
Sbjct: 58 LTVVAKG-PVIRAEAMASDKYAALDLAWAKLVERLRRARDRNKVSRAGHHRKESTAEALA 116
Query: 211 RLKVREPV------TQVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIE 260
++ V +P+ T+ E DA + + E V++R K F P+ + EA+
Sbjct: 117 KMPVADPIVPTDGGTESAETDAAAGPDRTNGRIKAEGDSPVVLREKSFAAAPIGIEEALN 176
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F +E + + ++VY+RK YGVI
Sbjct: 177 RMELVGHDFYLFIDEASQKPSVVYRRKGWSYGVI 210
>gi|420146099|ref|ZP_14653537.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398402223|gb|EJN55592.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 185
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 19/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++++VE+++GK ++ V L V + K EVT+
Sbjct: 6 VRGENIEVTAAIRSYVEKRLGKLEKYFTNTAESTAHVNLKVYPDKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KG +R+ V
Sbjct: 59 PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKFKTKINRKSRE-KG-----IRDFDLTV 112
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ DA+ S+EE + +VR K + P+ EAI Q++ + H+F+ F + ET +
Sbjct: 113 LAADANDDSKEEKLD-----VVRTKRVNLKPMDSEEAILQMDMLGHNFFIFEDAETNGTS 167
Query: 282 IVYKRKAGGYGVI 294
IVYKR+ G YG+I
Sbjct: 168 IVYKRRDGRYGLI 180
>gi|384183051|ref|YP_005568813.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324329135|gb|ADY24395.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 180
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R KG + P
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVNRKLRE-KGSMKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
T V ++ + E VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 ETVAVLDEVEEDELEL---------VRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|423394623|ref|ZP_17371824.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-1]
gi|423405491|ref|ZP_17382640.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-3]
gi|401657405|gb|EJS74915.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-1]
gi|401661107|gb|EJS78577.1| ribosomal subunit interface protein [Bacillus cereus BAG2X1-3]
Length = 180
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE+ +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEENNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSVKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHSFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|255283238|ref|ZP_05347793.1| ribosomal subunit interface protein [Bryantella formatexigens DSM
14469]
gi|255266311|gb|EET59516.1| ribosomal subunit interface protein [Marvinbryantia formatexigens
DSM 14469]
Length = 176
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GKN+E+T+ ++ V +K+GK + ++ E+ V +SV ++ EV
Sbjct: 1 MRFTISGKNIEITEGLRTTVMDKLGK-LERYFTPDTEIIVTMSVEKER-------QKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K + ++R+E+ + +Y SIDLV +I+R+LRK K K +H +G N RE +
Sbjct: 53 TIPVKGN-IIRSEQVSNDMYVSIDLVEEVIERQLRKYKNKLI--AKHQEGSNFR--REFI 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + + + I+R K F + P+ +A Q+E + H+F+ F N ET
Sbjct: 108 EKEETVEPEEVN-----------IIRTKHFGIKPMYPEDACIQMELLGHNFFVFCNAETE 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 157 EVNVVYKRKGNTYGLIEPE 175
>gi|297587624|ref|ZP_06946268.1| ribosomal subunit interface protein [Finegoldia magna ATCC 53516]
gi|297574313|gb|EFH93033.1| ribosomal subunit interface protein [Finegoldia magna ATCC 53516]
Length = 179
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQIRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T+ + E D IV+ K F + P+ EAI Q+E +DHDF+ F + +T
Sbjct: 98 TESNSIRFEAVEENNDKEIPIGAIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLDSKTN 157
Query: 279 EINIVYKRKAGGYGVIIP 296
+N+VYKRK G YG+++P
Sbjct: 158 NVNVVYKRKDGNYGLLVP 175
>gi|116511438|ref|YP_808654.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactococcus lactis subsp. cremoris SK11]
gi|116107092|gb|ABJ72232.1| SSU ribosomal protein S30P [Lactococcus lactis subsp. cremoris
SK11]
Length = 185
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 107/201 (53%), Gaps = 25/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+TD ++++VE+K+GK H V V L V + K
Sbjct: 2 IKFNIRGENVEVTDAIRDYVEDKIGKLDKYFNDGHEVTAY-VNLKVYTEKRAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVTL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+
Sbjct: 55 EVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV--------- 104
Query: 217 PVTQVVEND---ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
P QV ++ D E +D+ VD IVR K + P+ EA+ Q++ + HDFY F
Sbjct: 105 PTGQVFGDEFAPLDTTDEVAEDH-VD--IVRTKHVALKPMDAEEAVLQMDMLGHDFYVFT 161
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ ++ ++VY+R G YG+I
Sbjct: 162 DADSNGTHVVYRRTDGRYGLI 182
>gi|379727564|ref|YP_005319749.1| ribosomal subunit interface protein [Melissococcus plutonius
DAT561]
gi|376318467|dbj|BAL62254.1| ribosomal subunit interface protein [Melissococcus plutonius
DAT561]
Length = 182
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++N++E+KVGK + V V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRNYIEKKVGKLERYFNDSPVATVHANLKVYTEKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K + + R G + K V
Sbjct: 59 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTRINRKSRET-GIDTAK-----AAV 112
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
ND + + D IVR K + P+ EA+ Q+ + H+F+ F + ET +
Sbjct: 113 FLNDEGTEDPTDLD------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDSETNGTS 166
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 167 IVYRRKDGKYGLI 179
>gi|414073877|ref|YP_006999094.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris UC509.9]
gi|413973797|gb|AFW91261.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 185
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 25/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+TD ++ +VE+K+GK H V V L V + K
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHQVTAY-VNLKVYTEKRAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVTL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+
Sbjct: 55 EVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV--------- 104
Query: 217 PVTQVVEND---ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
P QV ++ D E +D+ VD IVR K + P+ EA+ Q++ + HDFY F
Sbjct: 105 PTGQVFGDEFAPLDTTDEVAEDH-VD--IVRTKHVALKPMNAEEAVLQMDMLGHDFYVFT 161
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ ++ ++VY+R G YG+I
Sbjct: 162 DADSNGTHVVYRRTDGRYGLI 182
>gi|423542191|ref|ZP_17518581.1| ribosomal subunit interface protein [Bacillus cereus HuB4-10]
gi|401169528|gb|EJQ76774.1| ribosomal subunit interface protein [Bacillus cereus HuB4-10]
Length = 180
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRIEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSVKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|399047324|ref|ZP_10739383.1| ribosomal subunit interface protein [Brevibacillus sp. CF112]
gi|433543809|ref|ZP_20500207.1| hypothetical protein D478_08903 [Brevibacillus agri BAB-2500]
gi|398054761|gb|EJL46871.1| ribosomal subunit interface protein [Brevibacillus sp. CF112]
gi|432184896|gb|ELK42399.1| hypothetical protein D478_08903 [Brevibacillus agri BAB-2500]
Length = 184
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 112/202 (55%), Gaps = 21/202 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+++T +K +VE+KVG+ +V V + V GE EV
Sbjct: 1 MKFNIRGENIQVTAALKEYVEKKVGRLEKYFETTPADVQVTMHVHRGEGT-------IEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAEE E +YA+IDLV+ ++R++RK K K +L+V +
Sbjct: 54 TI-PLAGVIIRAEETHEDMYAAIDLVAEKLERQVRKHKTKL---------MRKLRV-DSA 102
Query: 219 TQVVENDAD---VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+V + D+ V + D+ VD IVR K F++ P+ EA+ Q++ + H F+ F+N
Sbjct: 103 AKVGQRDSQPVAVMIPDVDEEDVDIDIVRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQNS 162
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+T ++++VY+R G YG+I PK
Sbjct: 163 DTNDVSVVYRRNDGRYGLIEPK 184
>gi|256396691|ref|YP_003118255.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Catenulispora acidiphila DSM 44928]
gi|256362917|gb|ACU76414.1| sigma 54 modulation protein/ribosomal protein S30EA [Catenulispora
acidiphila DSM 44928]
Length = 237
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 113/219 (51%), Gaps = 32/219 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD---VRLSVRGGEFGKGPRI-- 153
+ ++++ ++ E+TD + HV EK+ K V E+D + L+V GE K PR
Sbjct: 1 MDIVVKSRHHEVTDRFRRHVVEKLAK--------VEEMDGKAISLTVVLGE-EKNPRQSE 51
Query: 154 --RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R E+TL + V+RAE A Y+++DL ++ +Q +LR++K++ H +
Sbjct: 52 QKDRIELTLDCPRSPVIRAEACAGDPYSALDLAAAKLQAQLRRVKDRRKIHRNRKAIADS 111
Query: 212 LKVREPVTQVVENDADVQSEEE---DDNFVD-------------EVIVRMKFFEMPPLTV 255
+K P+ + A + + + D+ VD ++VR K P+T+
Sbjct: 112 IKHLPPMADLPPGTAPLLTSDGAAGDNPEVDLPAYGVPGQAGEGPMVVREKTHAAAPMTL 171
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ ++E V HDFY + ++++G +VY+R+A YGVI
Sbjct: 172 DQALYEMELVGHDFYLYVDKDSGLPAVVYRRRAYDYGVI 210
>gi|229099615|ref|ZP_04230543.1| Ribosome-associated factor Y [Bacillus cereus Rock3-29]
gi|229105792|ref|ZP_04236421.1| Ribosome-associated factor Y [Bacillus cereus Rock3-28]
gi|229118680|ref|ZP_04248032.1| Ribosome-associated factor Y [Bacillus cereus Rock1-3]
gi|407707659|ref|YP_006831244.1| transcription termination factor Rho [Bacillus thuringiensis MC28]
gi|423377017|ref|ZP_17354301.1| ribosomal subunit interface protein [Bacillus cereus BAG1O-2]
gi|423440120|ref|ZP_17417026.1| ribosomal subunit interface protein [Bacillus cereus BAG4X2-1]
gi|423449721|ref|ZP_17426600.1| ribosomal subunit interface protein [Bacillus cereus BAG5O-1]
gi|423463193|ref|ZP_17439961.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-1]
gi|423532546|ref|ZP_17508964.1| ribosomal subunit interface protein [Bacillus cereus HuB2-9]
gi|423548423|ref|ZP_17524781.1| ribosomal subunit interface protein [Bacillus cereus HuB5-5]
gi|423619121|ref|ZP_17594954.1| ribosomal subunit interface protein [Bacillus cereus VD115]
gi|423621784|ref|ZP_17597562.1| ribosomal subunit interface protein [Bacillus cereus VD148]
gi|228664872|gb|EEL20362.1| Ribosome-associated factor Y [Bacillus cereus Rock1-3]
gi|228677681|gb|EEL31929.1| Ribosome-associated factor Y [Bacillus cereus Rock3-28]
gi|228683911|gb|EEL37861.1| Ribosome-associated factor Y [Bacillus cereus Rock3-29]
gi|401128002|gb|EJQ35709.1| ribosomal subunit interface protein [Bacillus cereus BAG5O-1]
gi|401176097|gb|EJQ83295.1| ribosomal subunit interface protein [Bacillus cereus HuB5-5]
gi|401251834|gb|EJR58104.1| ribosomal subunit interface protein [Bacillus cereus VD115]
gi|401262813|gb|EJR68950.1| ribosomal subunit interface protein [Bacillus cereus VD148]
gi|401639619|gb|EJS57356.1| ribosomal subunit interface protein [Bacillus cereus BAG1O-2]
gi|402419891|gb|EJV52163.1| ribosomal subunit interface protein [Bacillus cereus BAG4X2-1]
gi|402422064|gb|EJV54306.1| ribosomal subunit interface protein [Bacillus cereus BAG6O-1]
gi|402464800|gb|EJV96488.1| ribosomal subunit interface protein [Bacillus cereus HuB2-9]
gi|407385344|gb|AFU15845.1| Ribosome-associated factor Y [Bacillus thuringiensis MC28]
Length = 180
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV I+R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVN---RKLREKGSVKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|406659586|ref|ZP_11067724.1| ribosomal subunit interface protein [Streptococcus iniae 9117]
gi|405577695|gb|EKB51843.1| ribosomal subunit interface protein [Streptococcus iniae 9117]
Length = 182
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLAK-IEKYFVEENEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILLG-NMTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KLPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
QV + + E E+D E+ IVR K + P+ V EA Q+E + HDF+ + + +
Sbjct: 107 GQVFTS----EFEAEEDEVAPEIKIVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSDN 162
Query: 278 GEINIVYKRKAGGYGVIIPK 297
G NI+Y+R+ G G+I K
Sbjct: 163 GATNILYRREDGDLGLIEAK 182
>gi|325836787|ref|ZP_08166254.1| ribosomal subunit interface protein [Turicibacter sp. HGF1]
gi|325491165|gb|EGC93454.1| ribosomal subunit interface protein [Turicibacter sp. HGF1]
Length = 182
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 110/202 (54%), Gaps = 30/202 (14%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVG--KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+++ I+G N +T+ +KN++E KVG + L ++ ++++ R+ ++ + I++
Sbjct: 1 MRIQIRGANRFVVTEAIKNYIENKVGSLQRFLPNN---QDLEARVYIKIYDV-----IQK 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV- 214
EVT+ ++RAEE+ + +YA+IDLV ++R++R+ K K + R +G + V
Sbjct: 53 VEVTI-PGNQFILRAEEENDDLYAAIDLVVDKLERQIRRNKTKANKKIREREGISDYFVT 111
Query: 215 --REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
PVT VE DEV ++K + P+ V EAI QL+ + HDFY +
Sbjct: 112 VDDTPVTHQVE---------------DEVPYKVKNVHLKPMDVEEAIMQLDLLGHDFYVY 156
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
R+ + +VY RK G YGVI
Sbjct: 157 RDMAVDAVCVVYLRKDGKYGVI 178
>gi|347542946|ref|YP_004857583.1| SSU 30S ribosomal protein S30P [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985982|dbj|BAK81657.1| SSU ribosomal protein S30P [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 177
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 110/200 (55%), Gaps = 31/200 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD--VRLSVRGGEFGKGPRIRRC 156
+K++ GKN+E+T +++ + +K+ K ++ RE++ V LSV + +
Sbjct: 1 MKIVTHGKNIEITHALEDIINKKLSKL---DNYFSRELEAQVTLSVEKND-------QVI 50
Query: 157 EV-TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV LF + +RA+E +Y +IDLV + +++R+ K K +K ++ R
Sbjct: 51 EVGILFNGTY--LRAQERNSDLYVAIDLVVDKLYKQIRRQKTK------LVKKYSNKDAR 102
Query: 216 EPVTQVVENDADVQSEE-EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
D+ + E+D+ D+VIV++K F + P+ EAI Q+E + HDFY F N
Sbjct: 103 S---------LDILFDNIENDDLEDDVIVKVKKFPIKPMYRDEAILQMELIGHDFYVFIN 153
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET ++N++Y+R++G YG+I
Sbjct: 154 AETNDVNVLYRRRSGNYGLI 173
>gi|423100840|ref|ZP_17088546.1| ribosomal subunit interface protein [Listeria innocua ATCC 33091]
gi|370792646|gb|EHN60502.1| ribosomal subunit interface protein [Listeria innocua ATCC 33091]
Length = 196
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 107/203 (52%), Gaps = 13/203 (6%)
Query: 92 WDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGP 151
+ G ++ +K I+G+N+E+T+ ++++VE+K+ K + D + V +
Sbjct: 4 FKGGIAMLKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD-- 58
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
+ + EVT+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 59 KNAKVEVTI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER 116
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ + EE + +F D IVR K F + P+ EA+ Q+ + H FY
Sbjct: 117 -----DYFAYSDVNGSTPPEENEGDF-DLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYV 170
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
+ + ET NIVY RK G YG+I
Sbjct: 171 YTDAETNGTNIVYSRKDGKYGLI 193
>gi|42784341|ref|NP_981588.1| ribosomal subunit interface protein [Bacillus cereus ATCC 10987]
gi|49481144|ref|YP_039178.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|206976850|ref|ZP_03237753.1| ribosomal subunit interface protein [Bacillus cereus H3081.97]
gi|228936475|ref|ZP_04099273.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229199305|ref|ZP_04325972.1| Ribosome-associated factor Y [Bacillus cereus m1293]
gi|402554727|ref|YP_006595998.1| ribosomal subunit interface protein [Bacillus cereus FRI-35]
gi|423355666|ref|ZP_17333290.1| ribosomal subunit interface protein [Bacillus cereus IS075]
gi|423573163|ref|ZP_17549282.1| ribosomal subunit interface protein [Bacillus cereus MSX-D12]
gi|423608475|ref|ZP_17584367.1| ribosomal subunit interface protein [Bacillus cereus VD102]
gi|42740272|gb|AAS44196.1| ribosomal subunit interface protein [Bacillus cereus ATCC 10987]
gi|49332700|gb|AAT63346.1| ribosomal subunit interface protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|206744985|gb|EDZ56389.1| ribosomal subunit interface protein [Bacillus cereus H3081.97]
gi|228584165|gb|EEK42316.1| Ribosome-associated factor Y [Bacillus cereus m1293]
gi|228823307|gb|EEM69141.1| Ribosome-associated factor Y [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|401082018|gb|EJP90289.1| ribosomal subunit interface protein [Bacillus cereus IS075]
gi|401215561|gb|EJR22277.1| ribosomal subunit interface protein [Bacillus cereus MSX-D12]
gi|401238484|gb|EJR44925.1| ribosomal subunit interface protein [Bacillus cereus VD102]
gi|401795937|gb|AFQ09796.1| ribosomal subunit interface protein [Bacillus cereus FRI-35]
Length = 180
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 111/197 (56%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ FT ++RAEE +YA+IDLV ++R++RK K K + R ++ +K
Sbjct: 53 TIPFT--DLLLRAEETNSDMYAAIDLVVDKLERQIRKHKTKVN---RKLREKGSMKTNFI 107
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + V +V+ +E +VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 108 LPEAVAVLDEVEEDEL-------ELVRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|421525829|ref|ZP_15972439.1| sigma(54) modulation protein [Fusobacterium nucleatum ChDC F128]
gi|402258398|gb|EJU08870.1| sigma(54) modulation protein [Fusobacterium nucleatum ChDC F128]
Length = 181
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 106/197 (53%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D V++EE+ + ++ +VR+ + + P+ +SEAI QLE ++ F+ F N ET
Sbjct: 106 RKKSYSFDYIVEAEEKLSD--EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNTET 162
Query: 278 GEINIVYKRKAGGYGVI 294
G++ +VYKRK G YGVI
Sbjct: 163 GKMAVVYKRKDGDYGVI 179
>gi|352517920|ref|YP_004887237.1| putative ribosome-associated protein [Tetragenococcus halophilus
NBRC 12172]
gi|348602027|dbj|BAK95073.1| putative ribosome-associated protein [Tetragenococcus halophilus
NBRC 12172]
Length = 184
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 107/193 (55%), Gaps = 18/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++++VE+KVGK + ++ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTQAIRDYVEKKVGK-LERYFNDVPEATAHVNLKV----YTEKTAKAEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +Y SIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYGSIDLVVDKLERQVRKFKTK----------INR-KKREASKPEA 108
Query: 223 ENDADVQSEE-EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ + EE E++N D IVR K + P+ EA+ Q+ + H+F+ F + +T +
Sbjct: 109 NQEVFFEDEEPEENNGSDLDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDADTTGTS 168
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 169 IVYRRKDGKYGLI 181
>gi|365156910|ref|ZP_09353197.1| ribosomal subunit interface protein [Bacillus smithii 7_3_47FAA]
gi|363626377|gb|EHL77367.1| ribosomal subunit interface protein [Bacillus smithii 7_3_47FAA]
Length = 182
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 110/194 (56%), Gaps = 21/194 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ + E+K+G+ + ++ + + +V ++++ ++ + EVT+
Sbjct: 5 IRGENIEVTPAIREYAEKKIGR-LERYFNETPDANVHVNLKV----YPDKMAKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VTQ 220
+ V+RAEE + +YA+IDL+ ++R++RK H NR K+RE +
Sbjct: 59 LPNLVLRAEERNQDMYAAIDLIVDKLERQIRK----------HKTKVNR-KLREQGSTKE 107
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+ + QS E++N D IVR K F + P+ EAI Q+ + H+F+ + + ET
Sbjct: 108 LFTVNESGQSNAEEEN--DITIVRTKQFSLKPMDSEEAILQMNLLGHNFFIYTDAETNAT 165
Query: 281 NIVYKRKAGGYGVI 294
NIVY+RK G YG+I
Sbjct: 166 NIVYRRKDGKYGLI 179
>gi|257063427|ref|YP_003143099.1| ribosomal subunit interface protein [Slackia heliotrinireducens DSM
20476]
gi|256791080|gb|ACV21750.1| ribosomal subunit interface protein [Slackia heliotrinireducens DSM
20476]
Length = 182
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+ G+ L +T T+ ++ EK+G A VL L EV +R+ + P I CEVT+
Sbjct: 5 VVGRKLTVTPTMNDYAVEKIGNALKVLDIDTLDAEVVLRVE----KAHVIPCI--CEVTI 58
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPV 218
K H +V EE +YA+ID+ ++ + R+LRK K + E G E +
Sbjct: 59 RPKGH-IVHVEERDSDMYAAIDIAAAKLTRQLRKYKTRVIEKRDG------------ETI 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ D D E D+ +VR+K E P+T +A Q++ + HDF+ + + +T
Sbjct: 106 RTAADPDFDALMAELS---ADDEVVRVKEVEFTPMTEEQACVQIDLLGHDFFVYTDRDTN 162
Query: 279 EINIVYKRKAGGYGVIIPKG 298
E+N++Y+R+ GGYG++ P+
Sbjct: 163 EVNVLYRRENGGYGLLKPRA 182
>gi|282848849|ref|ZP_06258239.1| ribosomal subunit interface protein [Veillonella parvula ATCC
17745]
gi|294793614|ref|ZP_06758751.1| ribosomal subunit interface protein [Veillonella sp. 3_1_44]
gi|416998830|ref|ZP_11939499.1| ribosomal subunit interface protein [Veillonella parvula
ACS-068-V-Sch12]
gi|282581354|gb|EFB86747.1| ribosomal subunit interface protein [Veillonella parvula ATCC
17745]
gi|294455184|gb|EFG23556.1| ribosomal subunit interface protein [Veillonella sp. 3_1_44]
gi|333976983|gb|EGL77842.1| ribosomal subunit interface protein [Veillonella parvula
ACS-068-V-Sch12]
Length = 175
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L+ + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELNAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKYKTRLAKRFKKQEAFHPETLATPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE +V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEETIE-----VVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETE 154
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG+I P+
Sbjct: 155 SMNVVYRRHDGFYGLIEPE 173
>gi|294791753|ref|ZP_06756901.1| ribosomal subunit interface protein [Veillonella sp. 6_1_27]
gi|294456983|gb|EFG25345.1| ribosomal subunit interface protein [Veillonella sp. 6_1_27]
Length = 175
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L+ + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELNAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKYKTRLAKRFKKQEAFHPEALATPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE +V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEETIE-----VVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETE 154
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG+I P+
Sbjct: 155 SMNVVYRRHDGFYGLIEPE 173
>gi|259502721|ref|ZP_05745623.1| ribosomal subunit interface protein [Lactobacillus antri DSM 16041]
gi|259169366|gb|EEW53861.1| ribosomal subunit interface protein [Lactobacillus antri DSM 16041]
Length = 179
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 35/203 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD ++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTDAIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L + V +D D S+E IVR K + P+ EA+ Q++ + HDF+
Sbjct: 108 L-------EFVPSDDDAASDELK-------IVRTKQVSLKPMDPEEAVLQMDMLGHDFFV 153
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F++ ET +IVY+R+ G YG+I
Sbjct: 154 FQDAETNGTSIVYRRRDGRYGLI 176
>gi|375091089|ref|ZP_09737390.1| ribosomal subunit interface protein [Helcococcus kunzii ATCC 51366]
gi|374564451|gb|EHR35744.1| ribosomal subunit interface protein [Helcococcus kunzii ATCC 51366]
Length = 177
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+ + D K VE+K+GK + + ++D + + F + EVT++ KK
Sbjct: 7 GKNINIRDNFKEDVEKKLGKL---NKYFDEDIDAKAT-----FSVDGNFKTVEVTIWLKK 58
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV--TQVV 222
++R+EE + + +S+D V + R++RK K K K E + +
Sbjct: 59 GTILRSEETTDDMLSSVDRVVESLDRQMRKYKTK----------LQTRKTGESIRYEAIP 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ +Q +EE IV++K + P+ V +AI Q++ +DHDF+ +++ ET +++
Sbjct: 109 TDNLTIQEDEE------PTIVKVKKIGLKPMFVEDAIMQMDLLDHDFFVYQDAETELVSV 162
Query: 283 VYKRKAGGYGVI 294
VY+R G YG+I
Sbjct: 163 VYRRTDGNYGII 174
>gi|303229878|ref|ZP_07316654.1| ribosomal subunit interface protein [Veillonella atypica
ACS-134-V-Col7a]
gi|303232150|ref|ZP_07318853.1| ribosomal subunit interface protein [Veillonella atypica
ACS-049-V-Sch6]
gi|401679763|ref|ZP_10811687.1| ribosomal subunit interface protein [Veillonella sp. ACP1]
gi|429759676|ref|ZP_19292172.1| ribosomal subunit interface protein [Veillonella atypica KON]
gi|302513256|gb|EFL55295.1| ribosomal subunit interface protein [Veillonella atypica
ACS-049-V-Sch6]
gi|302515434|gb|EFL57400.1| ribosomal subunit interface protein [Veillonella atypica
ACS-134-V-Col7a]
gi|400218890|gb|EJO49761.1| ribosomal subunit interface protein [Veillonella sp. ACP1]
gi|429179266|gb|EKY20522.1| ribosomal subunit interface protein [Veillonella atypica KON]
Length = 177
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+T ++ +VE+++GK L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTAALREYVEKRLGK-------LTRYFDDELDAQAV-LSVVRDKATIEI 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K R K F R + P
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKHK------TRLAKRFKRQEAFHP- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V D V+ E+ + +V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 105 -DVAPLDTPVEEEKIE-------VVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAETE 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG+I P+
Sbjct: 157 TMNVVYRRHDGFYGLIEPE 175
>gi|294783210|ref|ZP_06748534.1| sigma(54) modulation protein [Fusobacterium sp. 1_1_41FAA]
gi|340753701|ref|ZP_08690477.1| sigma(54) modulation protein [Fusobacterium sp. 2_1_31]
gi|422316389|ref|ZP_16397788.1| ribosomal subunit interface protein [Fusobacterium periodonticum
D10]
gi|229423264|gb|EEO38311.1| sigma(54) modulation protein [Fusobacterium sp. 2_1_31]
gi|294480088|gb|EFG27865.1| sigma(54) modulation protein [Fusobacterium sp. 1_1_41FAA]
gi|404591201|gb|EKA93378.1| ribosomal subunit interface protein [Fusobacterium periodonticum
D10]
Length = 181
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD +K + EEK+ + V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIKKYAEEKISR-VEKFNDSILKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ +L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMENQLKKHKEKRS----------RAKVQDDT 105
Query: 219 TQ-------VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ +VE + + E++ +VR+ + + P+ +SEAI QLE ++ F+
Sbjct: 106 RKKSYSFDYIVEPEEKISDEKK--------LVRV-YLPLKPMEISEAILQLEYLNRVFFA 156
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F N ETG++ +VYKRK G YGVI
Sbjct: 157 FTNSETGKMAVVYKRKDGDYGVI 179
>gi|323340159|ref|ZP_08080423.1| ribosomal subunit interface protein [Lactobacillus ruminis ATCC
25644]
gi|417972738|ref|ZP_12613626.1| ribosome-associated factor Y [Lactobacillus ruminis ATCC 25644]
gi|323092350|gb|EFZ34958.1| ribosomal subunit interface protein [Lactobacillus ruminis ATCC
25644]
gi|346330803|gb|EGX99034.1| ribosome-associated factor Y [Lactobacillus ruminis ATCC 25644]
Length = 186
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 21/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K+ ++G+N+E+T +++ +VE+K+ K + K+ V L V + K
Sbjct: 2 LKINVRGENIEVTGSIREYVEKKLAK-LEKYFEDTSSSTAHVNLKVYSDKNCK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKLNRKSRE-KGFKTF---- 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ V ++ ED F IVR K + P+ EAI Q++ + HDF+ + + E
Sbjct: 109 ---EFVPTADPKEAAAEDKKFE---IVRTKSVSLKPMDAEEAILQMDMLGHDFFIYEDAE 162
Query: 277 TGEINIVYKRKAGGYGVI 294
T I+IVY+R+ G YG+I
Sbjct: 163 TSGIDIVYRRRDGRYGLI 180
>gi|433447239|ref|ZP_20410872.1| ribosome-associated protein [Anoxybacillus flavithermus TNO-09.006]
gi|432000073|gb|ELK20979.1| ribosome-associated protein [Anoxybacillus flavithermus TNO-09.006]
Length = 182
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 100/199 (50%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE---VDVRLSVRGGEFGKGPRIRR 155
+K I+G+N+E+T ++ +VE+K+GK L+ E V V L V + K
Sbjct: 1 MKYNIRGENIEVTQAIREYVEKKIGK--LERYFESTEGITVYVNLKVYNDKQAK------ 52
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ V+RAEE + +YA+IDLV ++R++RK H NR K+R
Sbjct: 53 IEVTI-PMPQIVLRAEERHDDMYAAIDLVVDKLERQIRK----------HKTKVNR-KMR 100
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E V + + IVR K F + P+ EAI Q+ + H+FY F N
Sbjct: 101 EKEANGVTLTTTAPVATGEHEEEEFEIVRTKRFSLKPMDSEEAILQMNMLGHNFYVFINA 160
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET N+VYKRK G YG+I
Sbjct: 161 ETNRTNVVYKRKDGKYGLI 179
>gi|256848107|ref|ZP_05553551.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus coleohominis 101-4-CHN]
gi|256715167|gb|EEU30144.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus coleohominis 101-4-CHN]
Length = 179
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N++LTD ++++VE+++ K + L VD V + + + EV
Sbjct: 2 LKFNIRGENVDLTDAIRDYVEKRISKI---NKFLEDNVDATAHVNLKVYKN--KTFKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + +RAEE + +YASIDLV+ ++R++RK K K + R KG L
Sbjct: 57 TI-PLPYLTLRAEETSNDMYASIDLVTDKLERQIRKYKTKVNRKSRE-KGLKNL------ 108
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ V D EDD+ IVR K + P+ EA+ Q++ + HDF+ F++ +T
Sbjct: 109 -EFVPGD----DGTEDDSLK---IVRTKEISLKPMDSEEAVLQMDMLGHDFFIFQDADTN 160
Query: 279 EINIVYKRKAGGYGVI 294
++VY+R G YG+I
Sbjct: 161 GTSVVYRRNDGRYGLI 176
>gi|335998128|ref|ZP_08564040.1| ribosome-associated inhibitor protein Y [Lactobacillus ruminis
SPM0211]
gi|335348642|gb|EGM50143.1| ribosome-associated inhibitor protein Y [Lactobacillus ruminis
SPM0211]
Length = 186
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 21/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K+ ++G+N+E+T +++ +VE+K+ K + K+ V L V + K
Sbjct: 2 LKINVRGENIEVTGSIREYVEKKLAK-LEKYFEDTSSSTAHVNLKVYSDKNCK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KGF
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKLNRKSRE-KGFKTF---- 108
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ V ++ ED F IVR K + P+ EAI Q++ + HDF+ + + E
Sbjct: 109 ---EFVPTANPEEAAAEDKKFE---IVRTKSVSLKPMDAEEAILQMDMLGHDFFIYEDAE 162
Query: 277 TGEINIVYKRKAGGYGVI 294
T I+IVY+R+ G YG+I
Sbjct: 163 TSGIDIVYRRRDGRYGLI 180
>gi|333394244|ref|ZP_08476063.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|336391391|ref|ZP_08572790.1| 30S ribosomal interface protein S30EA [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 185
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 19/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++++VE+++GK ++ V L V + K EVT+
Sbjct: 6 VRGENIEVTAAIRSYVEKRLGKLEKYFTNTAESTAHVNLKVYPDKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ +RAEE + +YAS+DLV+ ++R++RK K K + R KG + P
Sbjct: 59 PLPYLTLRAEETSPDLYASVDLVTDKLERQIRKFKTKINRKSRE-KGIRDFDLTVPAA-- 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
DA+ S+EE + +VR K + P+ EAI Q++ + H+F+ F + ET +
Sbjct: 116 ---DANDDSKEEKLD-----VVRTKRVNLKPMDSEEAILQMDMLGHNFFIFEDAETNGTS 167
Query: 282 IVYKRKAGGYGVI 294
IVYKR+ G YG+I
Sbjct: 168 IVYKRRDGRYGLI 180
>gi|29376312|ref|NP_815466.1| ribosomal subunit interface protein [Enterococcus faecalis V583]
gi|255972542|ref|ZP_05423128.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T1]
gi|255975655|ref|ZP_05426241.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T2]
gi|256619258|ref|ZP_05476104.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ATCC 4200]
gi|256762750|ref|ZP_05503330.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T3]
gi|256853319|ref|ZP_05558689.1| ribosomal subunit interface protein [Enterococcus faecalis T8]
gi|256959171|ref|ZP_05563342.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis DS5]
gi|256961734|ref|ZP_05565905.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis Merz96]
gi|256964930|ref|ZP_05569101.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis HIP11704]
gi|257079208|ref|ZP_05573569.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis JH1]
gi|257082361|ref|ZP_05576722.1| sigma 54 modulation protein [Enterococcus faecalis E1Sol]
gi|257084987|ref|ZP_05579348.1| sigma 54 modulation protein [Enterococcus faecalis Fly1]
gi|257087049|ref|ZP_05581410.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis D6]
gi|257090080|ref|ZP_05584441.1| 30S ribosomal protein S30EA [Enterococcus faecalis CH188]
gi|257416285|ref|ZP_05593279.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ARO1/DG]
gi|257419491|ref|ZP_05596485.1| 30S ribosomal protein S30EA [Enterococcus faecalis T11]
gi|257422369|ref|ZP_05599359.1| ribosomal subunit interface protein [Enterococcus faecalis X98]
gi|294779422|ref|ZP_06744823.1| ribosomal subunit interface protein [Enterococcus faecalis PC1.1]
gi|300860732|ref|ZP_07106819.1| ribosomal subunit interface protein [Enterococcus faecalis TUSoD
Ef11]
gi|384518789|ref|YP_005706094.1| ribosomal subunit interface protein [Enterococcus faecalis 62]
gi|397700072|ref|YP_006537860.1| ribosomal subunit interface protein [Enterococcus faecalis D32]
gi|421512668|ref|ZP_15959470.1| Ribosomal subunit interface protein [Enterococcus faecalis ATCC
29212]
gi|428767256|ref|YP_007153367.1| ribosomal protein S30Ae/sigma 54 modulation family protein
[Enterococcus faecalis str. Symbioflor 1]
gi|430361791|ref|ZP_19426868.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
OG1X]
gi|430368473|ref|ZP_19428214.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis M7]
gi|29343775|gb|AAO81536.1| ribosomal subunit interface protein [Enterococcus faecalis V583]
gi|255963560|gb|EET96036.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T1]
gi|255968527|gb|EET99149.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T2]
gi|256598785|gb|EEU17961.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ATCC 4200]
gi|256684001|gb|EEU23696.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis T3]
gi|256711778|gb|EEU26816.1| ribosomal subunit interface protein [Enterococcus faecalis T8]
gi|256949667|gb|EEU66299.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis DS5]
gi|256952230|gb|EEU68862.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis Merz96]
gi|256955426|gb|EEU72058.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis HIP11704]
gi|256987238|gb|EEU74540.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis JH1]
gi|256990391|gb|EEU77693.1| sigma 54 modulation protein [Enterococcus faecalis E1Sol]
gi|256993017|gb|EEU80319.1| sigma 54 modulation protein [Enterococcus faecalis Fly1]
gi|256995079|gb|EEU82381.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis D6]
gi|256998892|gb|EEU85412.1| 30S ribosomal protein S30EA [Enterococcus faecalis CH188]
gi|257158113|gb|EEU88073.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecalis ARO1/DG]
gi|257161319|gb|EEU91279.1| 30S ribosomal protein S30EA [Enterococcus faecalis T11]
gi|257164193|gb|EEU94153.1| ribosomal subunit interface protein [Enterococcus faecalis X98]
gi|294453551|gb|EFG21952.1| ribosomal subunit interface protein [Enterococcus faecalis PC1.1]
gi|295113139|emb|CBL31776.1| ribosomal subunit interface protein [Enterococcus sp. 7L76]
gi|300849771|gb|EFK77521.1| ribosomal subunit interface protein [Enterococcus faecalis TUSoD
Ef11]
gi|323480922|gb|ADX80361.1| ribosomal subunit interface protein [Enterococcus faecalis 62]
gi|397336711|gb|AFO44383.1| ribosomal subunit interface protein [Enterococcus faecalis D32]
gi|401674235|gb|EJS80591.1| Ribosomal subunit interface protein [Enterococcus faecalis ATCC
29212]
gi|427185429|emb|CCO72653.1| ribosomal protein S30Ae/sigma 54 modulation family protein
[Enterococcus faecalis str. Symbioflor 1]
gi|429512344|gb|ELA01952.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
OG1X]
gi|429516229|gb|ELA05723.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis M7]
Length = 183
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 102/193 (52%), Gaps = 19/193 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T+ ++++VE+KVGK S V V L V + K EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAK------VEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YASIDLV ++R++RK K K + R G N K V V
Sbjct: 59 PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GRNNTKA--AVFLV 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
E + SE + IVR K + P+ EA+ Q+ + H+F+ F + ET +
Sbjct: 116 GEETEETPSELD--------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTS 167
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 168 IVYRRKDGKYGLI 180
>gi|229916625|ref|YP_002885271.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sp. AT1b]
gi|229468054|gb|ACQ69826.1| sigma 54 modulation protein/ribosomal protein S30EA
[Exiguobacterium sp. AT1b]
Length = 187
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 108/205 (52%), Gaps = 32/205 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-----VRLSVRGGEFGKGPRIRRCE 157
I+G+N+E+T +K++VE+K+ K + D V L V + ++ E
Sbjct: 5 IRGENIEVTPAIKDYVEKKLEKLT---RYFTTPTDAQTAYVNLKVYNEK-------QKVE 54
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG-----FNRL 212
VT+ + ++RAE+ +YA+IDLV ++R++RK K K + GR +G F L
Sbjct: 55 VTI-PMPNLLLRAEDINLDMYAAIDLVVDKLERQIRKHKTKLNRKGRGKEGGVGEYFKSL 113
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+ + V + D ++E E +VR K F + P+ EAI Q++ + H F+ F
Sbjct: 114 EGPDDTPAVYDED---EAELE--------LVRTKRFTLKPMDTEEAILQMDMLGHSFFVF 162
Query: 273 RNEETGEINIVYKRKAGGYGVIIPK 297
+ ETG N+VY+RK G YG+I P+
Sbjct: 163 SDAETGNTNVVYRRKDGKYGLIEPE 187
>gi|389574970|ref|ZP_10165021.1| ribosome-associated inhibitor A [Bacillus sp. M 2-6]
gi|388425394|gb|EIL83228.1| ribosome-associated inhibitor A [Bacillus sp. M 2-6]
Length = 187
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 21/200 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T +++HVE+K+GK + +VD ++V + + EVT+
Sbjct: 5 VRGENIEVTPALRDHVEKKIGKL---ERYFESDVDASVNVNLKFYNDQES--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ-- 220
+RAE E +Y ++DL +S ++R++RK K K NR K RE +
Sbjct: 59 MTDLALRAEVHNEDMYNAVDLATSKLERQIRKHKTK----------VNR-KFREQGAKKH 107
Query: 221 -VVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + +DD +DE IVR K F + P+ EAI Q+ + H F+ F N ET
Sbjct: 108 LFAGGNGASEVAVQDDEEIDETEIVRQKRFNLKPMDSEEAILQMNMLGHSFFVFTNAETN 167
Query: 279 EINIVYKRKAGGYGVIIPKG 298
N+VY+R G YG+I P
Sbjct: 168 LTNVVYRRNDGKYGLIEPNA 187
>gi|357420014|ref|YP_004933006.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermovirga
lienii DSM 17291]
gi|355397480|gb|AER66909.1| sigma 54 modulation protein/ribosomal protein S30EA [Thermovirga
lienii DSM 17291]
Length = 182
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 20/193 (10%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
K++EL D +K ++E K+ K R +DV++ V +F +G + E+T +
Sbjct: 8 KHVELQDEMKEYMERKLSKL---EKFFDRILDVQVEV---DFTRGMYV--VEIT--ADVN 57
Query: 166 GVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
GV+ R EE A+ + + D I+R+++K H +K R+K E +T +
Sbjct: 58 GVIMRGEEYAQDIRKAFDKGLKNIERQVKK-------HKEFLKDKARMKSHEELTFEIGE 110
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
+ S E +++F D +V++K F + P+T EA Q++ + H+FY F+N E G IN++Y
Sbjct: 111 FINEVSGEAEESFND--VVKVKRFPLRPMTAKEASMQMDLLGHNFYVFKNAENGGINVIY 168
Query: 285 KRKAGGYGVIIPK 297
+RK GG+G+++P+
Sbjct: 169 RRKNGGFGLLVPE 181
>gi|308175263|ref|YP_003921968.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens DSM 7]
gi|384161148|ref|YP_005543221.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens TA208]
gi|384166042|ref|YP_005547421.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens LL3]
gi|384170237|ref|YP_005551615.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens XH7]
gi|307608127|emb|CBI44498.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens DSM 7]
gi|328555236|gb|AEB25728.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens TA208]
gi|328913597|gb|AEB65193.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens LL3]
gi|341829516|gb|AEK90767.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens XH7]
Length = 187
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 29/202 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
+R+E E +Y +IDL ++ ++R++RK H NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRK----------HKTKVNR-KFREQGLPK 106
Query: 220 QVVEND--AD---VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
EN AD VQ E EDD+ IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 107 HYFENGSAADTVAVQDEIEDDS---PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTN 163
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
ET N+VY+R G YG+I P
Sbjct: 164 AETNLTNVVYRRNDGKYGLIEP 185
>gi|269797860|ref|YP_003311760.1| sigma 54 modulation protein/ribosomal protein S30EA [Veillonella
parvula DSM 2008]
gi|269094489|gb|ACZ24480.1| sigma 54 modulation protein/ribosomal protein S30EA [Veillonella
parvula DSM 2008]
Length = 175
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELDAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVVDKIVRQIHKYKTRLAKRFKKQEAFHPEALAAPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE +V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEETIE-----VVKRKHFVVRPMDVEEAILQMNLIGHDFFMFFNAETE 154
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG+I P+
Sbjct: 155 AMNVVYRRHDGFYGLIEPE 173
>gi|58336994|ref|YP_193579.1| phosphate starvation inducible protein stressrelated [Lactobacillus
acidophilus NCFM]
gi|58254311|gb|AAV42548.1| putative phosphate starvation inducible protein stressrelated
[Lactobacillus acidophilus NCFM]
Length = 180
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 107/196 (54%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ ++ D IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEKKPSEFD--------------IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETN 160
Query: 279 EINIVYKRKAGGYGVI 294
++VY+R G YG+I
Sbjct: 161 GTSVVYRRNDGRYGLI 176
>gi|282882948|ref|ZP_06291553.1| ribosome-associated factor Y [Peptoniphilus lacrimalis 315-B]
gi|281297359|gb|EFA89850.1| ribosome-associated factor Y [Peptoniphilus lacrimalis 315-B]
Length = 176
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 32/194 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN++L D +KN ++K K + EV R F K ++ EVT+F
Sbjct: 7 GKNIDLKDGLKNQAQKKFSKL---DKYFAEEVQAR-----AVFSKQKNGQKVEVTIFLP- 57
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE ++ ++ SID ++R++RK K RLK R + +
Sbjct: 58 GTILRAEETSQDMFVSIDKTVDKLERQVRKYK-------------TRLKKRYQNNETIRF 104
Query: 225 D----ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
D VQ EE+ D I + K F + P+ EAI Q+E ++H+F+ F+N E +I
Sbjct: 105 DNFDKEPVQKEEDKD------IKKRKTFTLRPMHEDEAILQMELLNHNFFIFKNAENDKI 158
Query: 281 NIVYKRKAGGYGVI 294
+ YKR G YG+I
Sbjct: 159 EVSYKRSDGDYGII 172
>gi|317496129|ref|ZP_07954489.1| sigma 54 modulation protein/S30EA ribosomal protein [Gemella
morbillorum M424]
gi|316913704|gb|EFV35190.1| sigma 54 modulation protein/S30EA ribosomal protein [Gemella
morbillorum M424]
Length = 181
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + + + + + + E+T+
Sbjct: 6 VRGENLEITQAIREYVENKVSKL---EKYFADSLQANVYANAKVYKNNKK--KIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
K GV +RAEE E +YA+IDLV ++R++RK K + + GR KGF V
Sbjct: 61 K--GVTLRAEETNEDLYAAIDLVVDKLERQMRKHKTRINRKGRE-KGF-----------V 106
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
EN E+ ++ +D ++K ++ +T EA+ Q+E + HDF+ F + T EI+
Sbjct: 107 EENLLTSALEDVEETSLD--FGKVKQLKVETMTRDEAVFQMELLGHDFFAFLDANTNEIS 164
Query: 282 IVYKRKAGGYGVI 294
IVYKR+ GYGV+
Sbjct: 165 IVYKRRDTGYGVL 177
>gi|410729115|ref|ZP_11367199.1| ribosomal subunit interface protein [Clostridium sp. Maddingley
MBC34-26]
gi|410596238|gb|EKQ50920.1| ribosomal subunit interface protein [Clostridium sp. Maddingley
MBC34-26]
Length = 177
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 32/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + KN+ELTD +K V++KV K + K+ + E LSV+ R ++
Sbjct: 1 MKVTVIAKNMELTDALKEIVQKKVSK-LEKYFEVEVEAKATLSVQKN---------RHKI 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMK--GFNRLKV 214
+ +GVV R EE +Y S+DLV ++R++RK K + S H +K N +++
Sbjct: 51 EVMIPFNGVVLRGEEATSDMYKSLDLVEDKLERQIRKQKTRLSRKHSGSLKFGEINNIEI 110
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P EEE N +VR+K F + P+ EAI Q++ + H+F+ +++
Sbjct: 111 NSP-------------EEEHGN-----LVRVKKFGVKPMNSEEAILQMDLLGHNFFVYQD 152
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
++ ++N+VYKRK G YG++ P
Sbjct: 153 ADSNKVNVVYKRKDGDYGLLEP 174
>gi|227518953|ref|ZP_03949002.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX0104]
gi|227553574|ref|ZP_03983623.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
HH22]
gi|229545624|ref|ZP_04434349.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX1322]
gi|229549814|ref|ZP_04438539.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis ATCC
29200]
gi|293383439|ref|ZP_06629352.1| ribosomal subunit interface protein [Enterococcus faecalis R712]
gi|293388908|ref|ZP_06633393.1| ribosomal subunit interface protein [Enterococcus faecalis S613]
gi|307269579|ref|ZP_07550918.1| ribosomal subunit interface protein [Enterococcus faecalis TX4248]
gi|307273023|ref|ZP_07554269.1| ribosomal subunit interface protein [Enterococcus faecalis TX0855]
gi|307275773|ref|ZP_07556912.1| ribosomal subunit interface protein [Enterococcus faecalis TX2134]
gi|307277869|ref|ZP_07558953.1| ribosomal subunit interface protein [Enterococcus faecalis TX0860]
gi|307289306|ref|ZP_07569262.1| ribosomal subunit interface protein [Enterococcus faecalis TX0109]
gi|307291795|ref|ZP_07571666.1| ribosomal subunit interface protein [Enterococcus faecalis TX0411]
gi|312901828|ref|ZP_07761093.1| ribosomal subunit interface protein [Enterococcus faecalis TX0470]
gi|312903516|ref|ZP_07762696.1| ribosomal subunit interface protein [Enterococcus faecalis TX0635]
gi|312907733|ref|ZP_07766724.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
512]
gi|312910351|ref|ZP_07769198.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
516]
gi|312951697|ref|ZP_07770592.1| ribosomal subunit interface protein [Enterococcus faecalis TX0102]
gi|384513441|ref|YP_005708534.1| ribosomal subunit interface protein [Enterococcus faecalis OG1RF]
gi|422685788|ref|ZP_16744001.1| ribosomal subunit interface protein [Enterococcus faecalis TX4000]
gi|422689167|ref|ZP_16747279.1| ribosomal subunit interface protein [Enterococcus faecalis TX0630]
gi|422692823|ref|ZP_16750838.1| ribosomal subunit interface protein [Enterococcus faecalis TX0031]
gi|422695180|ref|ZP_16753168.1| ribosomal subunit interface protein [Enterococcus faecalis TX4244]
gi|422696616|ref|ZP_16754572.1| ribosomal subunit interface protein [Enterococcus faecalis TX1346]
gi|422701961|ref|ZP_16759801.1| ribosomal subunit interface protein [Enterococcus faecalis TX1342]
gi|422704674|ref|ZP_16762484.1| ribosomal subunit interface protein [Enterococcus faecalis TX1302]
gi|422706468|ref|ZP_16764166.1| ribosomal subunit interface protein [Enterococcus faecalis TX0043]
gi|422708669|ref|ZP_16766197.1| ribosomal subunit interface protein [Enterococcus faecalis TX0027]
gi|422714422|ref|ZP_16771148.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309A]
gi|422715679|ref|ZP_16772395.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309B]
gi|422720719|ref|ZP_16777328.1| ribosomal subunit interface protein [Enterococcus faecalis TX0017]
gi|422722026|ref|ZP_16778603.1| ribosomal subunit interface protein [Enterococcus faecalis TX2137]
gi|422727251|ref|ZP_16783694.1| ribosomal subunit interface protein [Enterococcus faecalis TX0312]
gi|422729704|ref|ZP_16786102.1| ribosomal subunit interface protein [Enterococcus faecalis TX0012]
gi|422731550|ref|ZP_16787908.1| ribosomal subunit interface protein [Enterococcus faecalis TX0645]
gi|422735921|ref|ZP_16792187.1| ribosomal subunit interface protein [Enterococcus faecalis TX1341]
gi|422739202|ref|ZP_16794385.1| ribosomal subunit interface protein [Enterococcus faecalis TX2141]
gi|424673019|ref|ZP_18109962.1| ribosomal subunit interface protein [Enterococcus faecalis 599]
gi|424676567|ref|ZP_18113438.1| ribosomal subunit interface protein [Enterococcus faecalis ERV103]
gi|424681618|ref|ZP_18118405.1| ribosomal subunit interface protein [Enterococcus faecalis ERV116]
gi|424683808|ref|ZP_18120558.1| ribosomal subunit interface protein [Enterococcus faecalis ERV129]
gi|424686288|ref|ZP_18122956.1| ribosomal subunit interface protein [Enterococcus faecalis ERV25]
gi|424690440|ref|ZP_18126975.1| ribosomal subunit interface protein [Enterococcus faecalis ERV31]
gi|424695534|ref|ZP_18131917.1| ribosomal subunit interface protein [Enterococcus faecalis ERV37]
gi|424696728|ref|ZP_18133069.1| ribosomal subunit interface protein [Enterococcus faecalis ERV41]
gi|424699886|ref|ZP_18136097.1| ribosomal subunit interface protein [Enterococcus faecalis ERV62]
gi|424703100|ref|ZP_18139234.1| ribosomal subunit interface protein [Enterococcus faecalis ERV63]
gi|424707403|ref|ZP_18143387.1| ribosomal subunit interface protein [Enterococcus faecalis ERV65]
gi|424716937|ref|ZP_18146235.1| ribosomal subunit interface protein [Enterococcus faecalis ERV68]
gi|424720515|ref|ZP_18149616.1| ribosomal subunit interface protein [Enterococcus faecalis ERV72]
gi|424724063|ref|ZP_18153012.1| ribosomal subunit interface protein [Enterococcus faecalis ERV73]
gi|424733655|ref|ZP_18162210.1| ribosomal subunit interface protein [Enterococcus faecalis ERV81]
gi|424744046|ref|ZP_18172351.1| ribosomal subunit interface protein [Enterococcus faecalis ERV85]
gi|424750446|ref|ZP_18178510.1| ribosomal subunit interface protein [Enterococcus faecalis ERV93]
gi|424761117|ref|ZP_18188699.1| ribosomal subunit interface protein [Enterococcus faecalis R508]
gi|227073642|gb|EEI11605.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX0104]
gi|227177267|gb|EEI58239.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
HH22]
gi|229305083|gb|EEN71079.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis ATCC
29200]
gi|229309282|gb|EEN75269.1| ribosome-associated inhibitor protein Y [Enterococcus faecalis
TX1322]
gi|291079230|gb|EFE16594.1| ribosomal subunit interface protein [Enterococcus faecalis R712]
gi|291081689|gb|EFE18652.1| ribosomal subunit interface protein [Enterococcus faecalis S613]
gi|306497061|gb|EFM66607.1| ribosomal subunit interface protein [Enterococcus faecalis TX0411]
gi|306500015|gb|EFM69376.1| ribosomal subunit interface protein [Enterococcus faecalis TX0109]
gi|306505266|gb|EFM74452.1| ribosomal subunit interface protein [Enterococcus faecalis TX0860]
gi|306507465|gb|EFM76596.1| ribosomal subunit interface protein [Enterococcus faecalis TX2134]
gi|306510008|gb|EFM79032.1| ribosomal subunit interface protein [Enterococcus faecalis TX0855]
gi|306514199|gb|EFM82775.1| ribosomal subunit interface protein [Enterococcus faecalis TX4248]
gi|310626761|gb|EFQ10044.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
512]
gi|310630414|gb|EFQ13697.1| ribosomal subunit interface protein [Enterococcus faecalis TX0102]
gi|310633392|gb|EFQ16675.1| ribosomal subunit interface protein [Enterococcus faecalis TX0635]
gi|311289624|gb|EFQ68180.1| ribosomal subunit interface protein [Enterococcus faecalis DAPTO
516]
gi|311291021|gb|EFQ69577.1| ribosomal subunit interface protein [Enterococcus faecalis TX0470]
gi|315027923|gb|EFT39855.1| ribosomal subunit interface protein [Enterococcus faecalis TX2137]
gi|315029500|gb|EFT41432.1| ribosomal subunit interface protein [Enterococcus faecalis TX4000]
gi|315031973|gb|EFT43905.1| ribosomal subunit interface protein [Enterococcus faecalis TX0017]
gi|315037177|gb|EFT49109.1| ribosomal subunit interface protein [Enterococcus faecalis TX0027]
gi|315145006|gb|EFT89022.1| ribosomal subunit interface protein [Enterococcus faecalis TX2141]
gi|315147463|gb|EFT91479.1| ribosomal subunit interface protein [Enterococcus faecalis TX4244]
gi|315149824|gb|EFT93840.1| ribosomal subunit interface protein [Enterococcus faecalis TX0012]
gi|315152282|gb|EFT96298.1| ribosomal subunit interface protein [Enterococcus faecalis TX0031]
gi|315156083|gb|EFU00100.1| ribosomal subunit interface protein [Enterococcus faecalis TX0043]
gi|315158276|gb|EFU02293.1| ribosomal subunit interface protein [Enterococcus faecalis TX0312]
gi|315162417|gb|EFU06434.1| ribosomal subunit interface protein [Enterococcus faecalis TX0645]
gi|315163920|gb|EFU07937.1| ribosomal subunit interface protein [Enterococcus faecalis TX1302]
gi|315167272|gb|EFU11289.1| ribosomal subunit interface protein [Enterococcus faecalis TX1341]
gi|315169442|gb|EFU13459.1| ribosomal subunit interface protein [Enterococcus faecalis TX1342]
gi|315174823|gb|EFU18840.1| ribosomal subunit interface protein [Enterococcus faecalis TX1346]
gi|315576024|gb|EFU88215.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309B]
gi|315577788|gb|EFU89979.1| ribosomal subunit interface protein [Enterococcus faecalis TX0630]
gi|315580599|gb|EFU92790.1| ribosomal subunit interface protein [Enterococcus faecalis TX0309A]
gi|327535330|gb|AEA94164.1| ribosomal subunit interface protein [Enterococcus faecalis OG1RF]
gi|402350717|gb|EJU85615.1| ribosomal subunit interface protein [Enterococcus faecalis ERV116]
gi|402352829|gb|EJU87665.1| ribosomal subunit interface protein [Enterococcus faecalis 599]
gi|402356579|gb|EJU91310.1| ribosomal subunit interface protein [Enterococcus faecalis ERV103]
gi|402364173|gb|EJU98616.1| ribosomal subunit interface protein [Enterococcus faecalis ERV129]
gi|402364283|gb|EJU98725.1| ribosomal subunit interface protein [Enterococcus faecalis ERV31]
gi|402367822|gb|EJV02159.1| ribosomal subunit interface protein [Enterococcus faecalis ERV25]
gi|402368229|gb|EJV02549.1| ribosomal subunit interface protein [Enterococcus faecalis ERV37]
gi|402375385|gb|EJV09372.1| ribosomal subunit interface protein [Enterococcus faecalis ERV62]
gi|402377057|gb|EJV10968.1| ribosomal subunit interface protein [Enterococcus faecalis ERV41]
gi|402385001|gb|EJV18542.1| ribosomal subunit interface protein [Enterococcus faecalis ERV65]
gi|402385105|gb|EJV18645.1| ribosomal subunit interface protein [Enterococcus faecalis ERV63]
gi|402386285|gb|EJV19791.1| ribosomal subunit interface protein [Enterococcus faecalis ERV68]
gi|402391268|gb|EJV24579.1| ribosomal subunit interface protein [Enterococcus faecalis ERV81]
gi|402392986|gb|EJV26216.1| ribosomal subunit interface protein [Enterococcus faecalis ERV72]
gi|402396044|gb|EJV29119.1| ribosomal subunit interface protein [Enterococcus faecalis ERV73]
gi|402399469|gb|EJV32341.1| ribosomal subunit interface protein [Enterococcus faecalis ERV85]
gi|402402586|gb|EJV35294.1| ribosomal subunit interface protein [Enterococcus faecalis R508]
gi|402406745|gb|EJV39291.1| ribosomal subunit interface protein [Enterococcus faecalis ERV93]
Length = 189
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 19/202 (9%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPR 152
G + + ++G+N+E+T+ ++++VE+KVGK S V V L V + K
Sbjct: 3 GVIVMFRYNVRGENIEVTEAIRDYVEKKVGKLERYFSDSPEATVHVNLKVYTEKTAK--- 59
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
EVT+ + V+RAEE + +YASIDLV ++R++RK K K + R G N
Sbjct: 60 ---VEVTI-PLPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTKINRKSRET-GRNNT 114
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
K V V E + SE + IVR K + P+ EA+ Q+ + H+F+ F
Sbjct: 115 KA--AVFLVGEETEETPSELD--------IVRTKRLSLKPMDSEEAVLQMNMLGHNFFIF 164
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
+ ET +IVY+RK G YG+I
Sbjct: 165 EDAETNGTSIVYRRKDGKYGLI 186
>gi|335429926|ref|ZP_08556822.1| sigma 54 modulation protein/ribosomal protein S30EA [Haloplasma
contractile SSD-17B]
gi|334889008|gb|EGM27302.1| sigma 54 modulation protein/ribosomal protein S30EA [Haloplasma
contractile SSD-17B]
Length = 185
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 111/199 (55%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKN-LELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRC 156
+K++I+GK+ ++T+ ++N+VE+K+ K H + D + V + ++
Sbjct: 1 MKVLIRGKDGFKITEAIRNYVEDKISKI----GHYFTDTDELEARVVCKVYNHKQKV--- 53
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ T + ++RAE+ +YA+IDLV + +++R+ K+K + RH RE
Sbjct: 54 EVTIPTNQ-ILLRAEDIEGDLYAAIDLVIDKLDKQIRRHKDKINSIYRH---------RE 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V +++ ++ E + V E +V+ K + P+TV +AI +E VDH FY F N+E
Sbjct: 104 GVANFFKSNEELDINELEAKIVGESLVKNKKVSLEPMTVDDAIMNMELVDHSFYVFLNKE 163
Query: 277 TGEINIVYKRKAG-GYGVI 294
T ++NIVYKR+ Y VI
Sbjct: 164 TDKVNIVYKREDDTDYAVI 182
>gi|169824099|ref|YP_001691710.1| 30S ribosomal protein S30AE [Finegoldia magna ATCC 29328]
gi|167830904|dbj|BAG07820.1| 30S ribosomal protein S30AE family [Finegoldia magna ATCC 29328]
Length = 179
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQVRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T+ ++ E ++N E+ IV+ K F + P+ EAI Q+E +DHDF+ F +
Sbjct: 98 TE----SNSIRFEAVEENSAKEIPTGSIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLD 153
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
+T +N+VYKR G YG+++P
Sbjct: 154 SKTNNVNVVYKRNDGNYGLLVP 175
>gi|317050781|ref|YP_004111897.1| ribosomal subunit interface protein [Desulfurispirillum indicum S5]
gi|316945865|gb|ADU65341.1| ribosomal subunit interface protein [Desulfurispirillum indicum S5]
Length = 186
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 106/202 (52%), Gaps = 26/202 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK ++LT+ +K + EEK+GK + ++ V + + SV ++ EV L
Sbjct: 5 ITGKQIDLTEPLKQYAEEKIGK-LSRYFDTVMDAHIVFSVNKHR-------QKVEVNLLV 56
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+G+ + AE + +YASID V+ I+R++++ K K H K R+ +
Sbjct: 57 --NGINISAESTTQDMYASIDTVTDKIERQVKRYKNKIKSH----------KPRQQAKDM 104
Query: 222 VENDADVQSE-----EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V N +E EE + +++ F++ P++V EA+ Q+ + ++F FRN +
Sbjct: 105 VVNMNVFAAESFEEREEQAGGSEPKVIKSSSFKVKPMSVDEAVMQMNLISNEFLVFRNAD 164
Query: 277 TGEINIVYKRKAGGYGVIIPKG 298
+ +IN++Y+RK G YG++ P+
Sbjct: 165 SDQINVIYQRKDGNYGLVQPEA 186
>gi|125623477|ref|YP_001031960.1| sigma 54 modulation protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|385838924|ref|YP_005876554.1| Ribosomal subunit interface protein [Lactococcus lactis subsp.
cremoris A76]
gi|389853803|ref|YP_006356047.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|7800896|emb|CAB91549.1| hypothetical protein [Lactococcus lactis]
gi|124492285|emb|CAL97217.1| Putative Sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070225|gb|ADJ59625.1| putative sigma 54 modulation protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|358750152|gb|AEU41131.1| Ribosomal subunit interface protein [Lactococcus lactis subsp.
cremoris A76]
Length = 185
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 111/199 (55%), Gaps = 21/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++ +VE+K+GK + K+ + EV ++++ + + EV
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGK-LDKYFNDGHEVTAYVNLKVYTEKRA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+ P
Sbjct: 57 TL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAV---------PT 106
Query: 219 TQVVEND---ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
QV ++ D E +D+ VD IVR K + P+ EA+ Q++ + HDFY F +
Sbjct: 107 GQVFGDEFAPLDTTDEVAEDH-VD--IVRTKHVALKPMDAEEAVLQMDMLGHDFYVFTDA 163
Query: 276 ETGEINIVYKRKAGGYGVI 294
++ ++VY+R G YG+I
Sbjct: 164 DSNGTHVVYRRTDGRYGLI 182
>gi|402814028|ref|ZP_10863622.1| ribosomal subunit interface protein [Paenibacillus alvei DSM 29]
gi|402507875|gb|EJW18396.1| ribosomal subunit interface protein [Paenibacillus alvei DSM 29]
Length = 182
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 104/200 (52%), Gaps = 33/200 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--------VDVRLSVRGGEFGKGPRIR 154
++G+N+E+TD + ++VE+K+ S L R +V LSV +
Sbjct: 5 VRGQNIEVTDALLDYVEKKL-------SRLERYFETPPASGANVTLSVTKD-------VH 50
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
EVT+ ++RAE+ ++ +YASID V ++R++RK K K + R + L
Sbjct: 51 NIEVTI-PLPGLLLRAEDRSKDMYASIDGVVDKLERQIRKHKTKANRKFRQVGAAEHL-F 108
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
RE T V EEEDD V VR K F + P+ V EAI Q+ + H+F+ F N
Sbjct: 109 REQSTS-----TPVAVEEEDDLEV----VRTKRFTLKPMDVEEAILQMNMIGHNFFVFSN 159
Query: 275 EETGEINIVYKRKAGGYGVI 294
E+ E+N+VY+R G YG+I
Sbjct: 160 AESKEVNVVYRRDDGRYGLI 179
>gi|402299800|ref|ZP_10819373.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
alcalophilus ATCC 27647]
gi|401725046|gb|EJS98360.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
alcalophilus ATCC 27647]
Length = 184
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++ +VE+KVGK V +V+V++ V + E+T+
Sbjct: 5 IRGENIEVTPALREYVEKKVGKLERYFDTTPVADVNVKMQVLNNQ-------HIIEITI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL--KVREPVT 219
++R EE +YA+ID+V ++R++RK K K + R + EP+
Sbjct: 57 PLPQLLLRGEEVHTDMYAAIDVVIEKLERQIRKHKTKVNRKFRQEGSLKYMFKNELEPLE 116
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
Q V D D +VR K F + P+ EAI Q++ + H F+ F N E G+
Sbjct: 117 QEVIVDEDELE-----------VVRTKRFNLKPMDAEEAILQMDLLGHSFFVFSNSENGD 165
Query: 280 INIVYKRKAGGYGVIIPKG 298
N+VYKRK G YG+I P+
Sbjct: 166 TNVVYKRKDGRYGLIEPEA 184
>gi|403236258|ref|ZP_10914844.1| Ribosome-associated factor Y [Bacillus sp. 10403023]
Length = 185
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 18/196 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCEVTL 160
++G+N+E+T ++ +VE+K+GK L R D +V + + EVT+
Sbjct: 5 VRGENIEVTPALREYVEKKLGK-------LERYFDNTPDANVNVNLKVNNAKDHKIEVTI 57
Query: 161 FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ 220
++RAEE E +YA+ID+V+ ++R++RK K K + R KG +
Sbjct: 58 -PMPQLLLRAEESHEDMYAAIDIVTDKLERQIRKHKTKVNRKLRE-KGSTKTMFGNGGAA 115
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
D++ E D +VR K F++ P+ EAI Q+ + H+F+ F N ET
Sbjct: 116 TATAVQDIEDE-------DYELVRTKRFDLKPMDSEEAILQMNMLGHNFFVFTNAETNTT 168
Query: 281 NIVYKRKAGGYGVIIP 296
N+VY+RK G YG+I P
Sbjct: 169 NVVYRRKDGKYGIIEP 184
>gi|237745102|ref|ZP_04575583.1| sigma(54) modulation protein [Fusobacterium sp. 7_1]
gi|260494876|ref|ZP_05815006.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_33]
gi|289764715|ref|ZP_06524093.1| sigma(54) modulation protein [Fusobacterium sp. D11]
gi|336419293|ref|ZP_08599558.1| putative sigma(54) modulation protein [Fusobacterium sp. 11_3_2]
gi|423138422|ref|ZP_17126065.1| ribosomal subunit interface protein [Fusobacterium nucleatum subsp.
animalis F0419]
gi|229432331|gb|EEO42543.1| sigma(54) modulation protein [Fusobacterium sp. 7_1]
gi|260198038|gb|EEW95555.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_33]
gi|289716270|gb|EFD80282.1| sigma(54) modulation protein [Fusobacterium sp. D11]
gi|336163804|gb|EGN66719.1| putative sigma(54) modulation protein [Fusobacterium sp. 11_3_2]
gi|371957787|gb|EHO75530.1| ribosomal subunit interface protein [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 181
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R K+++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKIQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D V+ EE+ N ++ +VR+ + + P+ +SEAI QLE ++ F+ F N ET
Sbjct: 106 RKRSYSFDYIVEPEEKLSN--EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSET 162
Query: 278 GEINIVYKRKAGGYGVI 294
G + +VYKRK G YGVI
Sbjct: 163 GNMAVVYKRKDGDYGVI 179
>gi|238019426|ref|ZP_04599852.1| hypothetical protein VEIDISOL_01295 [Veillonella dispar ATCC 17748]
gi|237864125|gb|EEP65415.1| hypothetical protein VEIDISOL_01295 [Veillonella dispar ATCC 17748]
Length = 175
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELDAQAV-LSVVKDKSTVEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVIDKIVRQIHKHKTRLAKRFKKQEAFHPEALAAPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE +V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEETIE-----VVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAETE 154
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG+I P+
Sbjct: 155 AMNVVYRRHDGFYGLIEPE 173
>gi|295697364|ref|YP_003590602.1| ribosomal subunit interface protein [Kyrpidia tusciae DSM 2912]
gi|295412966|gb|ADG07458.1| ribosomal subunit interface protein [Kyrpidia tusciae DSM 2912]
Length = 180
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRC 156
+++ ++G NL +T+ ++ + KVG+ + K+ + ++V V LSV+ G + +
Sbjct: 1 MRIHVRGDNLAVTEALREYAVRKVGR-LEKYFDAPADQDVYVTLSVKRG-------LHKV 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ T V RAEE++ +Y S+DLV + + + E + K F + +R
Sbjct: 53 EVTM-TLGGIVFRAEEESGDMYGSLDLVVD------KLVSQAERHKSKINKRFRQAGIRT 105
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
A+V+ +E + +VR+K F + P+ V EAI Q++ + HDF+ F N +
Sbjct: 106 LT-------AEVEPAKEGQREIAGEVVRVKRFPVKPMPVEEAILQMDLLGHDFFVFANAD 158
Query: 277 TGEINIVYKRKAGGYGVIIP 296
T E+N+VY+RK G YG+I P
Sbjct: 159 TDEVNVVYRRKDGNYGLIEP 178
>gi|394991072|ref|ZP_10383880.1| YvyD [Bacillus sp. 916]
gi|393808055|gb|EJD69366.1| YvyD [Bacillus sp. 916]
Length = 188
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 98/199 (49%), Gaps = 22/199 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKVREP 217
+R+E E +Y +IDL ++ ++R++RK + K D G F
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTKVNRKFRDQGLPKHYFEN------ 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ VQ E EDD+ IVR K F + P+ EAI Q+ + H+F+ F N ET
Sbjct: 112 -GSAADTGVAVQDEIEDDS---PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFTNAET 167
Query: 278 GEINIVYKRKAGGYGVIIP 296
N+VY+R G YG+I P
Sbjct: 168 NLTNVVYRRNDGKYGLIEP 186
>gi|417886561|ref|ZP_12530705.1| ribosomal subunit interface protein [Lactobacillus oris F0423]
gi|341592952|gb|EGS35809.1| ribosomal subunit interface protein [Lactobacillus oris F0423]
Length = 179
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 35/203 (17%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD ++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTDAIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L + V +D D S+E IVR K + P+ EA+ Q++ + HDF+
Sbjct: 108 L-------EFVPSDDDSASDELK-------IVRTKQVSLKPMDPEEAVLQMDMLGHDFFV 153
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F++ ET +IVY+R+ G YG+I
Sbjct: 154 FQDAETNGTSIVYRRRDGRYGLI 176
>gi|289423900|ref|ZP_06425693.1| SSU ribosomal protein S30P [Peptostreptococcus anaerobius 653-L]
gi|289155677|gb|EFD04349.1| SSU ribosomal protein S30P [Peptostreptococcus anaerobius 653-L]
Length = 183
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 110/196 (56%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+++ GK + LT+ + ++++K K L + ++R++V + K ++ EV
Sbjct: 1 MKILVTGKKIRLTEGINGYIDKKFSKL---EKLLSEDTELRVTVSANKKEK----QKVEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL +VRAE+ E +Y++ID+V + R++ K K K G + ++ E
Sbjct: 54 TLDNINGHIVRAEDVQEDLYSAIDVVCDKLNRQIVKYKHKFKSRA---SGNDTIRF-ENF 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
Q++E + +++ ED V E R K F++ P++ EA+ Q+ + HDF+ F++++T
Sbjct: 110 NQLLEEE--IEAVPEDSELVFE---RRKKFDIRPMSPEEAVLQMNLLGHDFFLFKDQDTF 164
Query: 279 EINIVYKRKAGGYGVI 294
E+ +VY+R GGYG+I
Sbjct: 165 EVCLVYRRGDGGYGLI 180
>gi|384515111|ref|YP_005710203.1| hypothetical protein CULC809_00570 [Corynebacterium ulcerans 809]
gi|397653433|ref|YP_006494116.1| hypothetical protein CULC0102_0680 [Corynebacterium ulcerans 0102]
gi|334696312|gb|AEG81109.1| hypothetical protein CULC809_00570 [Corynebacterium ulcerans 809]
gi|393402389|dbj|BAM26881.1| hypothetical protein CULC0102_0680 [Corynebacterium ulcerans 0102]
Length = 220
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 32/214 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNAKLAK----IARLDPTLTFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVEN--DADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIE 260
E ++V+ A S+ + D + D V +VR K P++V +A+
Sbjct: 126 G-----ETAAELVQEAETARADSQYDHDPYADSVEEVLPGRVVRHKEHPSTPMSVDDALS 180
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 181 EMELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|154687646|ref|YP_001422807.1| hypothetical protein RBAM_032460 [Bacillus amyloliquefaciens FZB42]
gi|375363966|ref|YP_005132005.1| hypothetical protein BACAU_3276 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384267065|ref|YP_005422772.1| hypothetical protein BANAU_3435 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387900159|ref|YP_006330455.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
Y2]
gi|421730071|ref|ZP_16169200.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|429506824|ref|YP_007188008.1| sigma-54 modulation protein [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451345317|ref|YP_007443948.1| sigma-54 modulation protein [Bacillus amyloliquefaciens IT-45]
gi|452857153|ref|YP_007498836.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|154353497|gb|ABS75576.1| YvyD [Bacillus amyloliquefaciens FZB42]
gi|371569960|emb|CCF06810.1| putative protein yvyD [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|380500418|emb|CCG51456.1| putative protein yvyD [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|387174269|gb|AFJ63730.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
Y2]
gi|407076037|gb|EKE49021.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
subsp. plantarum M27]
gi|429488414|gb|AFZ92338.1| putative sigma-54 modulation protein [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|449849075|gb|AGF26067.1| sigma-54 modulation protein [Bacillus amyloliquefaciens IT-45]
gi|452081413|emb|CCP23181.1| ribosome-associated sigma 54 modulation protein [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 188
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 103/203 (50%), Gaps = 30/203 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T +K+HVE K+GK V +V+V L + K EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFEQSVNADVNVNLKFYNDKESK------VEVTI- 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 58 PMTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGLPK 106
Query: 220 QVVEND--AD----VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
EN AD VQ E EDD+ IVR K F + P+ EAI Q+ + H+F+ F
Sbjct: 107 HYFENGSAADTGVAVQDEIEDDS---PEIVRQKRFNLKPMDNEEAILQMNMLGHNFFVFT 163
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N ET N+VY+R G YG+I P
Sbjct: 164 NAETNLTNVVYRRNDGKYGLIEP 186
>gi|187934798|ref|YP_001884725.1| ribosome-associated protein Y [Clostridium botulinum B str. Eklund
17B]
gi|188590439|ref|YP_001919912.1| 30S ribosomal protein S30AE family [Clostridium botulinum E3 str.
Alaska E43]
gi|251779001|ref|ZP_04821921.1| ribosomal protein S30AE family [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|187722951|gb|ACD24172.1| ribosome-associated protein Y [Clostridium botulinum B str. Eklund
17B]
gi|188500720|gb|ACD53856.1| ribosomal protein S30AE family [Clostridium botulinum E3 str.
Alaska E43]
gi|243083316|gb|EES49206.1| ribosomal protein S30AE family [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 177
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+I+ KN+ELT+ ++ VE+K+ K + K+ + E LSV+ R R+
Sbjct: 1 MKVIVIAKNIELTNALREMVEKKISK-LGKYFNSDIEAKATLSVQ--------RNRQIVE 51
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ V+R EE E +Y +IDLV+ ++R++RK K K S F + PV
Sbjct: 52 VMIPFNGVVLRGEEANEDMYRAIDLVAEKLERQIRKQKTKLSRKKSGSLKFGEIVDLSPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V EE +V+ K F + P+ + EAI Q+E V H+F+ +++ ++
Sbjct: 112 A--------VDEEEAK-------LVKRKRFGVKPMDIDEAILQMELVGHNFFVYQDVDSN 156
Query: 279 EINIVYKRKAGGYGVIIP 296
+IN++YKRK G YG++ P
Sbjct: 157 KINVIYKRKDGDYGLLDP 174
>gi|342215022|ref|ZP_08707691.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 780
str. F0422]
gi|341590128|gb|EGS33377.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 780
str. F0422]
Length = 177
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 108/199 (54%), Gaps = 24/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKNLE+T ++ ++E+++ K + ++ V V LS+ E R+ EV
Sbjct: 1 MKVSVRGKNLEVTAALREYIEKRLEK-LSRYFETPVTVQVVLSLEKEE-------RKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F + V+R E +YA+IDLV I R++ K K + + R GF+
Sbjct: 53 TCFVES-VVLRGVESHLDMYAAIDLVVDKIVRQIHKHKTRLAKRFRKETGFH-------- 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V +A + +E + +VR K F + P++V EAI Q+ ++HDF+ F NE+T
Sbjct: 104 VDVTPVEAIPEEKELE-------VVRRKNFTVRPMSVEEAILQMNLLEHDFFMFFNEDTE 156
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG++ P+
Sbjct: 157 IMNVVYRRHDGKYGLLEPE 175
>gi|15616170|ref|NP_244475.1| ribosomal protein S30AE familyprotein [Bacillus halodurans C-125]
gi|10176232|dbj|BAB07327.1| ribosomal protein S30AE family [Bacillus halodurans C-125]
Length = 187
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 110/202 (54%), Gaps = 26/202 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+NLE+T ++ +VE+KVGK V +V+VR+ V + EVT+
Sbjct: 5 VRGENLEVTPALREYVEKKVGKLERYFDTTPVADVNVRMQVLNN-------LHIIEVTIP 57
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
+ ++RAEE +YA+IDLV ++R++RK K K NR K R+ +
Sbjct: 58 MSRL-LLRAEEKHSDMYAAIDLVIEKLERQIRKHKTK----------VNR-KFRQEGSLK 105
Query: 220 QVVENDAD----VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ +ND + ++ E + D +VR K F + P+ EAI Q++ + H+F+ F N
Sbjct: 106 YMFKNDLEPMDGMREEILLEEEDDLQVVRKKRFNLKPMDTEEAILQMDMLGHNFFVFSNA 165
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+G+ N+VY+RK G YG+I P+
Sbjct: 166 ISGDTNVVYRRKDGKYGLIEPE 187
>gi|337290191|ref|YP_004629212.1| hypothetical protein CULC22_00577 [Corynebacterium ulcerans
BR-AD22]
gi|334698497|gb|AEG83293.1| hypothetical protein CULC22_00577 [Corynebacterium ulcerans
BR-AD22]
Length = 220
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 32/214 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRSEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVEN--DADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIE 260
E ++V+ A S+ + D + D V +VR K P++V +A+
Sbjct: 126 G-----ETAAELVQEAETARADSQYDHDPYADSVEEVLPGRVVRHKEHPSTPMSVDDALS 180
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 181 EMELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|148272233|ref|YP_001221794.1| putative ribosome-associated protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830163|emb|CAN01092.1| putative ribosome-associated protein [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 229
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 18/207 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N E+TD + + EK K +++ + +D+++S + G R E+TL
Sbjct: 5 ITGRNAEITDRFRVYATEKADK-IVQLAEKSISLDIKVSRHSEKSGGSAGDDRVEITLVG 63
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH---------MKGFNRL 212
V+RAE A +A+ DL + +LR+ K+K+ H G H GF ++
Sbjct: 64 PGP-VIRAESSAADKFAAFDLALGRMLERLRRAKDKKKIHRGNHRPVSLQEAATDGFAQI 122
Query: 213 KVREPVTQVVE-----NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDH 267
+ +++E + A V ++D++ V++R K F +TV +A+E +E V H
Sbjct: 123 DLDPADAELIERVNGKSVAPVDQPVDEDDYC-PVVIRTKVFPSQSMTVDQALEHMELVGH 181
Query: 268 DFYGFRNEETGEINIVYKRKAGGYGVI 294
DF+ F + ET ++VY+RK YGVI
Sbjct: 182 DFFLFIDAETDRPSVVYRRKGWDYGVI 208
>gi|380303017|ref|ZP_09852710.1| 30S ribosomal protein S30P/sigma 54 modulation protein
[Brachybacterium squillarum M-6-3]
Length = 216
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 25/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI----R 154
+++ + G+++++ D + H+ EK+ K +R VDV +S K PR
Sbjct: 1 MEINVVGRHMDVPDRFRRHLSEKLDKVTQLAPAALR-VDVEVSQE-----KNPRQSELSD 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-----HMKGF 209
R E+T+ V+R+E A+ +Y ++D+ + +LR+ ++K DH R H G
Sbjct: 55 RVELTVVDNG-AVIRSEARADDLYGALDIAYGKLLERLRRARDKRKDHRRGRDRSHQAGA 113
Query: 210 NRLKVR----EPVTQVVEND--ADVQSEEEDDNFVDE---VIVRMKFFEMPPLTVSEAIE 260
L+ EP + E + A +S+ + + + V++R K P+ + +A+
Sbjct: 114 PSLRTMTPDGEPPAPLSEPEPAAPAESDAAEQDLATQGSPVVIREKKHPARPMDIDDALY 173
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
Q+E V HDF+ F + ETG +VY+RK YGVI
Sbjct: 174 QMELVGHDFFLFVDAETGNPKVVYRRKGWNYGVI 207
>gi|15672625|ref|NP_266799.1| hypothetical protein L32389 [Lactococcus lactis subsp. lactis
Il1403]
gi|281491119|ref|YP_003353099.1| ribosome-associated factor Y [Lactococcus lactis subsp. lactis
KF147]
gi|385830136|ref|YP_005867949.1| ribosome-associated factor Y [Lactococcus lactis subsp. lactis
CV56]
gi|418036955|ref|ZP_12675346.1| hypothetical protein LLCRE1631_00153 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|12723547|gb|AAK04741.1|AE006297_4 hypothetical protein L32389 [Lactococcus lactis subsp. lactis
Il1403]
gi|281374869|gb|ADA64388.1| Ribosome-associated factor Y [Lactococcus lactis subsp. lactis
KF147]
gi|326406144|gb|ADZ63215.1| ribosome-associated factor Y [Lactococcus lactis subsp. lactis
CV56]
gi|354695100|gb|EHE94722.1| hypothetical protein LLCRE1631_00153 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374672635|dbj|BAL50526.1| hypothetical protein lilo_0525 [Lactococcus lactis subsp. lactis
IO-1]
Length = 185
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 29/203 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK--AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+E+TD ++ +VE+K+GK H V V L V + K
Sbjct: 2 IKFNIRGENVEVTDAIRAYVEDKIGKLDKYFNDGHEVTAY-VNLKVYSEKRAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM----KGF-NR 211
EVTL K+ +RAE+ ++ +Y+SID V ++R++RK K + + R+ + F +
Sbjct: 55 EVTL-PAKNVTLRAEDTSQDMYSSIDFVEEKLERQIRKYKTRMNRKPRNAVPTGQAFGDE 113
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
E +V E+ D IVR K + P+ EA+ Q++ + HDFY
Sbjct: 114 FAPLEKADEVAEDHVD--------------IVRTKHVALKPMDAEEAVLQMDMLGHDFYV 159
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F + ++ ++VY+R G YG+I
Sbjct: 160 FTDADSNGTHVVYRRTDGRYGLI 182
>gi|297200100|ref|ZP_06917497.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces sviceus ATCC 29083]
gi|297147574|gb|EDY61230.2| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces sviceus ATCC 29083]
Length = 274
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 24/215 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R
Sbjct: 44 CVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRCDRV 102
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+TL ++ V+RAE A YA++DL + + +LRK E + H R +G RL E
Sbjct: 103 EITLRSRG-PVIRAEAAASDPYAALDLAAEKLDARLRK--EHDKRHTR--RGARRLTAAE 157
Query: 217 -----PVTQVVENDADVQSEEEDDNFV------------DEVIVRMKFFEMPPLTVSEAI 259
P + D EE+ D ++VR K P+T+ +A+
Sbjct: 158 VPDHVPDAATLNGHGDPVHEEDSDGVPVKKIGSLEIKGEGPLVVREKTHVASPMTLDQAL 217
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 218 YEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 252
>gi|56808645|ref|ZP_00366371.1| COG1544: Ribosome-associated protein Y (PSrp-1) [Streptococcus
pyogenes M49 591]
Length = 182
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV + + EE D + +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFTTEFEA---EEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSENG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
NI+Y+R+ G G+I K
Sbjct: 164 ATNILYRREDGNLGLIEAK 182
>gi|423565935|ref|ZP_17542210.1| ribosomal subunit interface protein [Bacillus cereus MSX-A1]
gi|401193068|gb|EJR00076.1| ribosomal subunit interface protein [Bacillus cereus MSX-A1]
Length = 180
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 21/197 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T +K +VE+K+ K + ++ E+ V L V + +R EV
Sbjct: 1 MKFNIRGENIEVTPALKEYVEKKLSK-LERYFDTFPEIKVNLKVYSDK-------QRVEV 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F ++RAEE +YA+IDLV I+R++RK K K + R KG + P
Sbjct: 53 TIPFI--DLLLRAEETNSDMYAAIDLVVDKIERQIRKHKTKVNRKLRE-KGSMKTNFILP 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V ++ + E VR K F++ P+ V EAI Q++ + H+F+ F N +T
Sbjct: 110 EAVAVMDEVEEDELEL---------VRTKRFDLKPMDVEEAILQMDMLGHNFFVFTNADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
E N+VY RK G YG+I
Sbjct: 161 NETNVVYGRKDGKYGLI 177
>gi|220932482|ref|YP_002509390.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Halothermothrix orenii H 168]
gi|219993792|gb|ACL70395.1| sigma 54 modulation protein/ribosomal protein S30EA
[Halothermothrix orenii H 168]
Length = 184
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 24/202 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ GKN+++T +K + EKV K +E + + V KG I EV
Sbjct: 1 MKITTYGKNIDVTPALKEYAIEKVSKLGKYFDGEPQEAHISMEVE-----KGRHI--VEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T + ++R EE+++ +YASID V ++R++ K K K NR K+RE
Sbjct: 54 TAYLNGL-ILRGEEESQDMYASIDGVLEKLERQVHKYKTK----------INR-KIRERK 101
Query: 219 TQVVENDADVQSEE----EDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ + + + EE E+D F IVR K F + P++V EA Q++ + HDF+ F N
Sbjct: 102 QEFKKEYKEERREEILNSEEDEFKPR-IVRTKKFAIKPMSVEEAAMQMDLLGHDFFVFTN 160
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
T ++N+VYKRK G YG+I P
Sbjct: 161 ANTEQVNVVYKRKDGNYGLIEP 182
>gi|229829657|ref|ZP_04455726.1| hypothetical protein GCWU000342_01754 [Shuttleworthia satelles DSM
14600]
gi|229791646|gb|EEP27760.1| hypothetical protein GCWU000342_01754 [Shuttleworthia satelles DSM
14600]
Length = 176
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 32/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE---VDVRLSV-RGGEFGKGPRIR 154
+K I G+N+ELTD +K+ VE+ A+ K RE V +SV + G+
Sbjct: 1 MKTTITGRNIELTDGLKSAVED----ALSKLDRYFREDTLAHVTMSVDKAGQ-------- 48
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
R E+T+ K G+VR E+ + +Y SID S I+ +L K + K D R KG
Sbjct: 49 RVELTIPVKG-GIVRCEKTTDDMYVSIDAASEGIEDQLTKYRHKLVD--RAHKG------ 99
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
V N A + +ED+ + IVR K F++ P+ +A Q+E + H F+ F N
Sbjct: 100 ------AVLNAAFEEGFDEDEEEEIK-IVRTKKFDLKPMYAEDACAQMELLGHSFFVFTN 152
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
ET +N+VY+RK G YG+I P+
Sbjct: 153 AETDAVNVVYRRKNGSYGLIEPE 175
>gi|34763431|ref|ZP_00144379.1| PROBABLE SIGMA(54) MODULATION PROTEIN; SSU ribosomal protein S30P
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|237741496|ref|ZP_04571977.1| sigma(54) modulation protein [Fusobacterium sp. 4_1_13]
gi|256844831|ref|ZP_05550289.1| ribosome-associated protein Y [Fusobacterium sp. 3_1_36A2]
gi|294785888|ref|ZP_06751176.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_27]
gi|421144372|ref|ZP_15604286.1| sigma(54) modulation protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|27886900|gb|EAA24024.1| PROBABLE SIGMA(54) MODULATION PROTEIN; SSU ribosomal protein S30P
[Fusobacterium nucleatum subsp. vincentii ATCC 49256]
gi|229429144|gb|EEO39356.1| sigma(54) modulation protein [Fusobacterium sp. 4_1_13]
gi|256718390|gb|EEU31945.1| ribosome-associated protein Y [Fusobacterium sp. 3_1_36A2]
gi|294487602|gb|EFG34964.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_27]
gi|395489166|gb|EJG10007.1| sigma(54) modulation protein [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 181
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D V++ E+ F DE + + + P+ +SEAI QLE ++ F+ F N ET
Sbjct: 106 RKKSYSFDYIVEAGEK---FSDEKKLVRVYLPLKPMEISEAILQLEYLNRVFFAFTNSET 162
Query: 278 GEINIVYKRKAGGYGVI 294
G++ +VYKRK G YGVI
Sbjct: 163 GKMAVVYKRKDGDYGVI 179
>gi|421858649|ref|ZP_16290913.1| ribosome-associated protein Y [Paenibacillus popilliae ATCC 14706]
gi|410831822|dbj|GAC41350.1| ribosome-associated protein Y [Paenibacillus popilliae ATCC 14706]
Length = 180
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 31/198 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+++E+TD + ++VE+K+G+ + +V+V LSV IR +
Sbjct: 5 VRGQHIEVTDALLDYVEKKLGRLERYFEAPPTSDVNVTLSV----------IRDLHIVEV 54
Query: 162 T--KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
T ++RAE+ ++ +YASID V+ ++R++RK K K NR K R+ T
Sbjct: 55 TIPLPGLLLRAEDRSKDMYASIDSVTDKLERQIRKHKTK----------VNR-KFRQTGT 103
Query: 220 QV---VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ + A V +EED V VRMK F + P+ V EAI Q+ + H F+ F N E
Sbjct: 104 EAHLFSDVAAPVPVDEEDQLEV----VRMKRFTLKPMDVEEAILQMNMIGHSFFVFSNAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T E+N+VY+R G YG+I
Sbjct: 160 TKEVNVVYRRDDGRYGLI 177
>gi|116513711|ref|YP_812617.1| ribosome-associated protein Y (PSrp-1) [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|385815327|ref|YP_005851718.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|418029070|ref|ZP_12667618.1| hypothetical protein LDBUL1632_00412 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|418035444|ref|ZP_12673901.1| hypothetical protein LDBUL1519_00601 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|116093026|gb|ABJ58179.1| SSU ribosomal protein S30P [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|325125364|gb|ADY84694.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|354690433|gb|EHE90381.1| hypothetical protein LDBUL1519_00601 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354690788|gb|EHE90730.1| hypothetical protein LDBUL1632_00412 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 185
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 20/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRDYVEKRLTK-LEKYFDLSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG + E
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGVEEFFIPE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
DA V+ E+E+ + + IVR K + P+ EAI Q++ ++HDF+ F++ E
Sbjct: 113 --------DAPVEEEKEEKAPMFK-IVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAE 163
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 164 TNGTSVVYRRNDGSYGLI 181
>gi|260584687|ref|ZP_05852433.1| ribosomal subunit interface protein [Granulicatella elegans ATCC
700633]
gi|260157710|gb|EEW92780.1| ribosomal subunit interface protein [Granulicatella elegans ATCC
700633]
Length = 182
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 109/192 (56%), Gaps = 19/192 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T+ ++N+ E+K+ K + K+ V V ++++ + + EVT+
Sbjct: 6 IRGENIEVTEAIRNYAEKKLSK-LEKYFGDVANATVHVNLKV----YTEKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +Y SIDLV ++R++RK K K + R KGF+ +
Sbjct: 60 LPYLVLRAEETSGDLYGSIDLVIDKLERQVRKYKTKINRKSRE-KGFD----------IP 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ +ED++ ++ IVR K ++ P+ EA+ Q+ + H+F+ +++ ET E +I
Sbjct: 109 VAPVVPEPVDEDESVLE--IVRTKRVDLKPMDSEEAVLQMNMLGHNFFIYQDAETNETHI 166
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 167 VYRRKDGKYGLI 178
>gi|295398529|ref|ZP_06808563.1| ribosomal subunit interface protein [Aerococcus viridans ATCC
11563]
gi|294973252|gb|EFG49045.1| ribosomal subunit interface protein [Aerococcus viridans ATCC
11563]
Length = 194
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ + E+K+ K + D V + + + EVT+
Sbjct: 6 VRGENIEITPAIREYAEKKISKI---ERYFTDSPDATAYVNAKVYPN--KDAKAEVTIPL 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP---VT 219
+RAEE ++ +Y SIDLV ++R++RK K K + R G P T
Sbjct: 61 TGGLTLRAEETSQDLYGSIDLVVDKLERQVRKYKTKMNRKPRVSAGL-------PGAVET 113
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
QV + + ++EE D IVR K + P+T EA+ Q+E + H+F+ F + ETG+
Sbjct: 114 QVQADRVEQEAEEGHDPIK---IVRRKTLSVKPMTAEEAVLQMEMLGHNFFIFEDAETGK 170
Query: 280 INIVYKRKAGGYGVI 294
+VY R+ G YG+I
Sbjct: 171 GALVYARRKGSYGLI 185
>gi|319938278|ref|ZP_08012675.1| 30S ribosomal interface protein S30EA [Coprobacillus sp. 29_1]
gi|319806571|gb|EFW03229.1| 30S ribosomal interface protein S30EA [Coprobacillus sp. 29_1]
Length = 176
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 110/197 (55%), Gaps = 25/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+I++GKN+ELT+ +++ + +K+ + K+ + V+ ++ +R G ++ EV
Sbjct: 1 MKIIVRGKNIELTEGIESKINKKLN-MLDKYFIMSDNVEAKVLIRTYPLG-----QKIEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREP 217
T+ T+ + ++RAE + +Y +IDLV ++ ++RK K + S + K FN
Sbjct: 55 TIPTE-YVLLRAEVVDQDLYNAIDLVIDKLEGQIRKYKTRLSRKSKDNKLAFN------- 106
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + ++ +EED ++V+ K P+ + EAI Q+E + H F+ +R+ ET
Sbjct: 107 ----IASIVPLEDQEED------IVVKTKTISPKPMDMEEAIMQMELIGHSFFVYRDTET 156
Query: 278 GEINIVYKRKAGGYGVI 294
I++ YKR GGYG+I
Sbjct: 157 NLISVAYKRHDGGYGLI 173
>gi|314933060|ref|ZP_07840426.1| ribosomal subunit interface protein [Staphylococcus caprae C87]
gi|313654379|gb|EFS18135.1| ribosomal subunit interface protein [Staphylococcus caprae C87]
Length = 191
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYSNSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ K +RAEE + +YA IDL++ ++R++RK K + + R +G + V
Sbjct: 54 IEVTI-PLKDVTLRAEERHDDLYAGIDLITGKLERQVRKYKTRVNRKHRD-RGDQEVFVA 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
E E +V EE + D I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 112 EVQEASPE---EVSGAEEPVSDSDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDR 168
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 169 ETDGTSIVYRRKDGKYGLI 187
>gi|422759562|ref|ZP_16813324.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
gi|322412397|gb|EFY03305.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 182
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 110/203 (54%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ + +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFNEEQEIDARVNLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
QV + + + VDE +VR K + P+ V EA Q+E + HDF+ + +
Sbjct: 107 GQVFTTEFEAEQ-------VDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFIYTD 159
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E GE NI+Y+R+ G G+I K
Sbjct: 160 AEDGETNILYRREDGDLGLIEAK 182
>gi|429204739|ref|ZP_19196022.1| Ribosome-associated factor Y [Lactobacillus saerimneri 30a]
gi|428146962|gb|EKW99195.1| Ribosome-associated factor Y [Lactobacillus saerimneri 30a]
Length = 183
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+T ++ +VE+K+ K S+ V++++ + +
Sbjct: 2 LKYNVRGENIEVTSALREYVEKKISKLEKFFEDTSNSTAHVNMKVY--------SDKNAK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-V 214
EVT+ + V+RAEE + +YAS+DLV+ ++R++RK K K + R KGF L V
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNLDFV 111
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+V E D IVR K + P+ EAI Q++ + HDF+ +++
Sbjct: 112 PSETEEVPEKSFD--------------IVRTKQVSIKPMDSEEAILQMDMLGHDFFIYQD 157
Query: 275 EETGEINIVYKRKAGGYGVI 294
E+ INIVY+R+ G YG+I
Sbjct: 158 AESDGINIVYRRRDGRYGLI 177
>gi|322386967|ref|ZP_08060591.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
gi|417922214|ref|ZP_12565703.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
gi|321269249|gb|EFX52185.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
gi|342833102|gb|EGU67390.1| ribosomal subunit interface protein [Streptococcus cristatus ATCC
51100]
Length = 180
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVIDKIERQIRKNKTKIEKKNR-----NKVATSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DAD S + +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 TDALVEDADAASSK---------VVRSKHIDLKPMDLDEAILQMDLLGHDFFIYTDVEDS 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGDIGLL 177
>gi|456385100|gb|EMF50678.1| hypothetical protein SBD_8242 [Streptomyces bottropensis ATCC
25435]
Length = 275
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 87 PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGG 145
PV S G V ++++G+ E+ + + HV EK+ + + K V +DV +S +
Sbjct: 34 PVERSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEP 92
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
+ R R E+TL ++ V+RAE A YA++DL + ++ +LRK +K
Sbjct: 93 NPRQADRSDRVEITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYTR--- 148
Query: 206 MKGFNRLKVRE-----PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFF 248
+G RL E P + + V EE+ D + +IVR K
Sbjct: 149 -RGARRLTAAEVADHVPGVATLNGNGYVADEEKTDGVPTKKIGSLEVKGEGPLIVREKTH 207
Query: 249 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+T+ +A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 208 VASPMTLDQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 253
>gi|398813972|ref|ZP_10572658.1| ribosomal subunit interface protein [Brevibacillus sp. BC25]
gi|398037383|gb|EJL30575.1| ribosomal subunit interface protein [Brevibacillus sp. BC25]
Length = 187
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 113/203 (55%), Gaps = 20/203 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+++T ++ +VE+KVG+ + K+ + EV V + V GE
Sbjct: 1 MKFNIRGENIQVTAALREYVEKKVGR-LEKYFETPQPTEVQVTMHVHRGEGT-------I 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ ++RAEE E +YA+IDLV ++R++RK K K R + R+ RE
Sbjct: 53 EVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIRKHKTKLMRKLR-VDSTGRIAQRE 110
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
PV ++ + + + + D VR K F++ P+ EA+ Q++ + H F+ F+N
Sbjct: 111 SQPVAVMIPDVDEDDIDIDIDI------VRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQN 164
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
+T ++++VY+R G YG+I PK
Sbjct: 165 SDTNDVSVVYRRNDGRYGLIEPK 187
>gi|304407679|ref|ZP_07389330.1| ribosomal subunit interface protein [Paenibacillus curdlanolyticus
YK9]
gi|304343162|gb|EFM09005.1| ribosomal subunit interface protein [Paenibacillus curdlanolyticus
YK9]
Length = 181
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL--VREVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+++++T+ ++ +VE+K + + K+ E +V LSV G
Sbjct: 1 MKYNIRGQHIQVTEALREYVEKKTSR-LEKYFEAPETSETNVTLSVTKGYHA-------V 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EV++ ++RAE +E +YASID V ++R++RK K + + R+ G
Sbjct: 53 EVSI-PLTGAMLRAEVKSEDMYASIDAVVDKLERQIRKHKTRVNRKIRNESGIR------ 105
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
T E+ + V+ +E+++F +VR K F P+ V EAI Q+ V H+F+ F N +
Sbjct: 106 --TFFKESGSTVRVLDEEEDFE---VVRTKQFTFKPMDVEEAILQMNMVGHNFFVFANSD 160
Query: 277 TGEINIVYKRKAGGYGVI 294
T E+N+VYKR G YG+I
Sbjct: 161 TKEVNVVYKRSDGKYGLI 178
>gi|336323245|ref|YP_004603212.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Flexistipes sinusarabici DSM 4947]
gi|336106826|gb|AEI14644.1| sigma 54 modulation protein/ribosomal protein S30EA [Flexistipes
sinusarabici DSM 4947]
Length = 177
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I KN++LTD ++++V +K+GK V K+ V EV V L V+ + EV L
Sbjct: 5 ITAKNIDLTDAIRSYVNKKIGK-VKKYFDQVIEVHVVLEVQKN-------LHIAEV-LVN 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN---RLKVREPVT 219
K ++ E +E +YASIDL I+R+L K KEK K F +L V E +
Sbjct: 56 AKGVFLKGLEKSEDLYASIDLAVDKIERQLVKYKEKIQSKKLMNKDFEEPFKLNVIETGS 115
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
+N V S++ + P+ V EA+ Q++ ++ +F+ FRN ++ E
Sbjct: 116 LDTDNPVTVISKQ---------------IPVKPMDVEEAVMQMDLLNKNFFVFRNADSSE 160
Query: 280 INIVYKRKAGGYGVIIP 296
+N+VYKR G G+I P
Sbjct: 161 VNVVYKRDDGNIGLIEP 177
>gi|342217783|ref|ZP_08710421.1| ribosomal subunit interface protein [Megasphaera sp. UPII 135-E]
gi|341592770|gb|EGS35630.1| ribosomal subunit interface protein [Megasphaera sp. UPII 135-E]
Length = 174
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 102/197 (51%), Gaps = 28/197 (14%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
+I++GKNLE+T +K +V K K +LK+ + LS+ K +I E+TL
Sbjct: 3 MIVRGKNLEITPALKEYVL-KNEKKLLKYFDNEVQSQTMLSIE-----KERKI--AEITL 54
Query: 161 FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ GVV R+ E E +YASIDL + R++ K K + R MK E V
Sbjct: 55 --RIDGVVLRSIEANEDMYASIDLAYDKLVRQIHKYKTR---LARRMK--------ESVF 101
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
+ V+ EE+ + I R+K F P+ EAI Q+ V HDF+ F N ET +
Sbjct: 102 HASLIEGKVEPEEKFE------IARVKKFAARPMDTEEAILQMNLVGHDFFVFLNAETDK 155
Query: 280 INIVYKRKAGGYGVIIP 296
IN+VYKRK G YG+I P
Sbjct: 156 INVVYKRKHGKYGLIEP 172
>gi|15675492|ref|NP_269666.1| hypothetical protein SPy_1613 [Streptococcus pyogenes SF370]
gi|19746540|ref|NP_607676.1| hypothetical protein spyM18_1623 [Streptococcus pyogenes MGAS8232]
gi|21910894|ref|NP_665162.1| ribosomal subunit interface protein [Streptococcus pyogenes
MGAS315]
gi|28895415|ref|NP_801765.1| hypothetical protein SPs0503 [Streptococcus pyogenes SSI-1]
gi|50914717|ref|YP_060689.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS10394]
gi|71904028|ref|YP_280831.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS6180]
gi|71911138|ref|YP_282688.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS5005]
gi|94988950|ref|YP_597051.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS9429]
gi|94992843|ref|YP_600942.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS2096]
gi|94994830|ref|YP_602928.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS10750]
gi|139473337|ref|YP_001128052.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus pyogenes str. Manfredo]
gi|383480350|ref|YP_005389244.1| ribosomal associated protein [Streptococcus pyogenes MGAS15252]
gi|383494332|ref|YP_005412008.1| ribosomal associated protein [Streptococcus pyogenes MGAS1882]
gi|386363170|ref|YP_006072501.1| ribosomal subunit interface protein [Streptococcus pyogenes Alab49]
gi|410680988|ref|YP_006933390.1| Ribosomal subunit interface protein [Streptococcus pyogenes A20]
gi|417856496|ref|ZP_12501555.1| ribosomal subunit interface protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892424|ref|ZP_16323084.1| Ribosomal subunit interface protein [Streptococcus pyogenes NS88.2]
gi|81371745|sp|Q5XAQ7.1|RAFY_STRP6 RecName: Full=Ribosome-associated factor Y
gi|13622688|gb|AAK34387.1| conserved protein - function unknown [Streptococcus pyogenes M1
GAS]
gi|19748751|gb|AAL98175.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21905100|gb|AAM79965.1| putative ribosomal subunit interface protein [Streptococcus
pyogenes MGAS315]
gi|28810661|dbj|BAC63598.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50903791|gb|AAT87506.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS10394]
gi|71803123|gb|AAX72476.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS6180]
gi|71853920|gb|AAZ51943.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS5005]
gi|94542458|gb|ABF32507.1| ribosome-associated factor Y [Streptococcus pyogenes MGAS9429]
gi|94544458|gb|ABF34506.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS10270]
gi|94546351|gb|ABF36398.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS2096]
gi|94548338|gb|ABF38384.1| Ribosome-associated factor Y [Streptococcus pyogenes MGAS10750]
gi|134271583|emb|CAM29808.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pyogenes str. Manfredo]
gi|350277579|gb|AEQ24947.1| ribosomal subunit interface protein [Streptococcus pyogenes Alab49]
gi|378928340|gb|AFC66546.1| ribosomal associated protein [Streptococcus pyogenes MGAS15252]
gi|378930059|gb|AFC68476.1| ribosomal associated protein [Streptococcus pyogenes MGAS1882]
gi|379981822|emb|CCG26806.1| Ribosomal subunit interface protein [Streptococcus pyogenes NS88.2]
gi|387933451|gb|EIK41564.1| ribosomal subunit interface protein [Streptococcus pyogenes HKU
QMH11M0907901]
gi|409693577|gb|AFV38437.1| Ribosomal subunit interface protein [Streptococcus pyogenes A20]
Length = 182
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV + + EE D + +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFTTEFEA---EEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
NI+Y+R+ G G+I K
Sbjct: 164 ATNILYRREDGNLGLIEAK 182
>gi|226314895|ref|YP_002774791.1| hypothetical protein BBR47_53100 [Brevibacillus brevis NBRC 100599]
gi|226097845|dbj|BAH46287.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 185
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 112/203 (55%), Gaps = 22/203 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR--EVDVRLSVRGGEFGKGPRIRRC 156
+K I+G+N+++T ++ +VE+KVG+ + K+ + EV V + V GE
Sbjct: 1 MKFNIRGENIQVTAALREYVEKKVGR-LEKYFETPQPTEVQVTMHVHRGEGT-------I 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ ++RAEE E +YA+IDLV ++R++RK K K R + R+ RE
Sbjct: 53 EVTI-PLSGVIIRAEETHEDMYAAIDLVVEKLERQIRKHKTKLMRKLR-VDSTGRIAQRE 110
Query: 217 --PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
PV ++ + + + + VR K F++ P+ EA+ Q++ + H F+ F+N
Sbjct: 111 SQPVAVMIPDVDEEDIDIDI--------VRTKRFDLKPMDAQEAVMQMDMLGHSFFVFQN 162
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
+T ++++VY+R G YG+I PK
Sbjct: 163 SDTNDVSVVYRRNDGRYGLIEPK 185
>gi|377557110|ref|ZP_09786769.1| Ribosomal subunit interface protein [Lactobacillus gastricus PS3]
gi|376166355|gb|EHS85266.1| Ribosomal subunit interface protein [Lactobacillus gastricus PS3]
Length = 180
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 22/197 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+TD ++ +VE+++ K ++ E V L V + + E
Sbjct: 2 LKFNIRGENIEVTDAIREYVEKRLSKLEKYLEENVPAEAHVNLKVYSN------KTYKVE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG L+
Sbjct: 56 VTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQVRKYKTKVNRKARE-KGLKDLEF--- 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V + ++++ D IVR K + P+ EA+ Q++ + HDF+ F + +T
Sbjct: 111 ----------VDTVDDEEPVSDLKIVRTKQISLKPMDSEEAVLQMDMLGHDFFVFEDADT 160
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+R G YG+I
Sbjct: 161 NGTSIVYRRNDGCYGLI 177
>gi|306826957|ref|ZP_07460257.1| ribosomal subunit interface protein [Streptococcus pyogenes ATCC
10782]
gi|304430975|gb|EFM33984.1| ribosomal subunit interface protein [Streptococcus pyogenes ATCC
10782]
Length = 182
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDTRVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV + + EE D + +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFTTEFEA---EEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
NI+Y+R+ G G+I K
Sbjct: 164 ATNILYRREDGNLGLIEAK 182
>gi|300857939|ref|YP_003782922.1| hypothetical protein cpfrc_00522 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288104|ref|YP_005122645.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 3/99-5]
gi|384504119|ref|YP_005680789.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1002]
gi|385806975|ref|YP_005843372.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 267]
gi|387136061|ref|YP_005692041.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 42/02-A]
gi|392400074|ref|YP_006436674.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis Cp162]
gi|300685393|gb|ADK28315.1| hypothetical protein cpfrc_00522 [Corynebacterium
pseudotuberculosis FRC41]
gi|302330219|gb|ADL20413.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1002]
gi|348606506|gb|AEP69779.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371575393|gb|AEX38996.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383804368|gb|AFH51447.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 267]
gi|390531152|gb|AFM06881.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis Cp162]
Length = 220
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 28/212 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRAEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQL 262
E V + AD Q + D + D V +VR K P++V +A+ ++
Sbjct: 126 GETAA-ELVHEAETARADSQYDH--DPYADSVEEVLPGRVVRHKEHPSTPMSVDDALSEM 182
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 183 ELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|313893723|ref|ZP_07827290.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 158
str. F0412]
gi|313441737|gb|EFR60162.1| ribosomal subunit interface protein [Veillonella sp. oral taxon 158
str. F0412]
Length = 175
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 100/199 (50%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+E+TD ++ ++E+++ K L R D L + E+
Sbjct: 1 MKVAIRGKNIEVTDALRAYIEKRLSK-------LTRYFDDELDAQAV-LSVVKDKSTIEL 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T F K V+R E + +YA+IDLV I R++ K K + + + + F+ + PV
Sbjct: 53 TCFVDK-IVLRGVETNDDMYAAIDLVIDKIVRQIHKHKTRLAKRFKKQEAFHPEVLAAPV 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
EEE +V+ K F + P+ V EAI Q+ + HDF+ F N ET
Sbjct: 112 ------------EEETIE-----VVKRKHFAVRPMDVEEAILQMNLIGHDFFMFFNAETE 154
Query: 279 EINIVYKRKAGGYGVIIPK 297
+N+VY+R G YG+I P+
Sbjct: 155 AMNVVYRRHDGFYGLIEPE 173
>gi|297206287|ref|ZP_06923682.1| ribosomal subunit interface protein [Lactobacillus jensenii JV-V16]
gi|297149413|gb|EFH29711.1| ribosomal subunit interface protein [Lactobacillus jensenii JV-V16]
Length = 181
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 55 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE+ + D IVR K + P+ EAI Q++ ++HDF+ F++ E
Sbjct: 113 PA-----------EEEKPTSEFD--IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T +IVY+R G YG+I
Sbjct: 160 TNGTSIVYRRNDGRYGLI 177
>gi|320547866|ref|ZP_08042149.1| ribosomal subunit interface protein [Streptococcus equinus ATCC
9812]
gi|320447406|gb|EFW88166.1| ribosomal subunit interface protein [Streptococcus equinus ATCC
9812]
Length = 182
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 113/199 (56%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE K+GK + K+ + +E+D R++++ + + EV
Sbjct: 2 IKYSVRGENIEVTDAIRSYVESKLGK-IKKYFNAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K + R + P
Sbjct: 57 TILVDS-ITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIARKHRE---------KLPA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + ++ + + EE +VR K + P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SHIFTSEFEAEETEESPAVN---VVRTKHVSLKPMDLDEALLQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
E NI+Y+R+ G G+I K
Sbjct: 164 ETNILYRREDGELGLIEAK 182
>gi|256851472|ref|ZP_05556861.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus jensenii 27-2-CHN]
gi|260660893|ref|ZP_05861808.1| ribosome-associated protein Y [Lactobacillus jensenii 115-3-CHN]
gi|256616534|gb|EEU21722.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Lactobacillus jensenii 27-2-CHN]
gi|260548615|gb|EEX24590.1| ribosome-associated protein Y [Lactobacillus jensenii 115-3-CHN]
Length = 187
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 8 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 60
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 61 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 118
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE+ + D IVR K + P+ EAI Q++ ++HDF+ F++ E
Sbjct: 119 PA-----------EEEKPTSEFD--IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAE 165
Query: 277 TGEINIVYKRKAGGYGVI 294
T +IVY+R G YG+I
Sbjct: 166 TNGTSIVYRRNDGRYGLI 183
>gi|365839540|ref|ZP_09380776.1| ribosomal subunit interface protein [Anaeroglobus geminatus F0357]
gi|364564508|gb|EHM42272.1| ribosomal subunit interface protein [Anaeroglobus geminatus F0357]
Length = 174
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 38/201 (18%)
Query: 103 IQGKNLELTDTVKNHV---EEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRCE 157
++GKNLE+TD +KN+V E+KV K + EV+++ LSV K +I E
Sbjct: 5 VRGKNLEVTDALKNYVLKHEKKVTK------YFESEVNLQAMLSVE-----KERKI--AE 51
Query: 158 VTLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
+TL K GVV R E E +YA+IDL I + +R+I + ++ R +K +
Sbjct: 52 LTL--KVDGVVLRVVEANEDMYAAIDL---IFDKMVRQIHKYKTRIARRIKSGS------ 100
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ ++ E D+ F +VR K F P+ V EAI Q+ V HDF+ F N E
Sbjct: 101 -----FQTALATEAPESDEVFE---VVRTKKFAARPMDVEEAILQMNLVGHDFFVFLNAE 152
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T I++VYKRK G YG+I P+
Sbjct: 153 TENISVVYKRKHGKYGLIEPE 173
>gi|386317537|ref|YP_006013701.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
gi|408402141|ref|YP_006860105.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410495470|ref|YP_006905316.1| Ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|323127824|gb|ADX25121.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
gi|407968370|dbj|BAM61608.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410440630|emb|CCI63258.1| Ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 182
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 110/203 (54%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+DVR++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDVRVNLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
QV + + + VDE +VR K + P+ V EA Q+E + HDF+ + +
Sbjct: 107 GQVFTTEFEAEQ-------VDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFIYTD 159
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E GE NI+Y+R+ G G+I K
Sbjct: 160 AEDGETNILYRREDGDLGLIEAK 182
>gi|312868555|ref|ZP_07728752.1| ribosomal subunit interface protein [Lactobacillus oris PB013-T2-3]
gi|311095926|gb|EFQ54173.1| ribosomal subunit interface protein [Lactobacillus oris PB013-T2-3]
Length = 179
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 37/204 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD + ++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTDAIWDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
L + V +D DD+ DE+ IVR K + P+ EA+ Q++ + HDF+
Sbjct: 108 L-------EFVPSD--------DDSVSDELKIVRTKQVSLKPMDPEEAVLQMDMLGHDFF 152
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F++ ET +IVY+R+ G YG+I
Sbjct: 153 VFQDAETNGTSIVYRRRDGRYGLI 176
>gi|424828122|ref|ZP_18252863.1| ribosomal subunit interface protein [Clostridium sporogenes PA
3679]
gi|365979605|gb|EHN15658.1| ribosomal subunit interface protein [Clostridium sporogenes PA
3679]
Length = 175
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 108/202 (53%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+++T+ +K VE+K+ K + V V LSV + + EV
Sbjct: 1 MKITVIGKNIDITNALKETVEKKLSKLERFFNPDVV-VTATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ HGV+ R EE E +YASID+V ++R++RK K K H ++ F +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLERQIRKQKTKLQRKIHDGSLR-FQYI--- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
D +S E + IV+ K F M P++ EA+ Q+E + H+F+ ++N
Sbjct: 107 ----------PDYESGENKET----QIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNA 152
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+T E+N++Y+RK G YG+I P+
Sbjct: 153 DTEEVNVIYRRKDGNYGLIEPE 174
>gi|383313699|ref|YP_005374554.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis P54B96]
gi|384506212|ref|YP_005682881.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis C231]
gi|384508300|ref|YP_005684968.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis I19]
gi|384510394|ref|YP_005689972.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis PAT10]
gi|302205668|gb|ADL10010.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis C231]
gi|308275903|gb|ADO25802.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis I19]
gi|341824333|gb|AEK91854.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis PAT10]
gi|380869200|gb|AFF21674.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis P54B96]
Length = 222
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 28/212 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 17 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRAEQ 68
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 69 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 127
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQL 262
E V + AD Q + D + D V +VR K P++V +A+ ++
Sbjct: 128 GETAA-ELVHEAETARADSQYDH--DPYADSVEEVLPGRVVRHKEHPSTPMSVDDALSEM 184
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 185 ELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 216
>gi|440783100|ref|ZP_20960911.1| Ribosome-associated protein Y (PSrp-1) [Clostridium pasteurianum
DSM 525]
gi|440219675|gb|ELP58886.1| Ribosome-associated protein Y (PSrp-1) [Clostridium pasteurianum
DSM 525]
Length = 178
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 112/202 (55%), Gaps = 28/202 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ I GKN+E+T+ +++ +E+K+ K + ++ + V LSV + EV
Sbjct: 1 MRITISGKNVEVTNGLRSAIEKKLTK-LDRYFNPDVTAHVTLSVENYR-------QIVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVRE 216
T+ ++R EE +YA+IDLV+ ++R++RK K K +G ++
Sbjct: 53 TI-PFGGAILRGEESNTDMYAAIDLVTDKMERQVRKQKTKLDRKKYGASLR--------- 102
Query: 217 PVTQVVENDADVQSEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
++ D + + +DD V E IV+ K F + P++ EA+ Q+E + H+F+ F+N
Sbjct: 103 -----FQSIPDFEEDNKDD--VKEPSIVKTKRFAIKPMSEEEAVLQMELLAHNFFVFQNA 155
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
++ E+N+VYKRK G YG+I P+
Sbjct: 156 DSSEVNVVYKRKDGNYGLIEPE 177
>gi|170781106|ref|YP_001709438.1| hypothetical protein CMS_0672 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155674|emb|CAQ00794.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 235
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 18/207 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G+N E+TD + + EK K +++ + +D+++S + G R E+TL
Sbjct: 11 ITGRNAEITDRFRVYATEKADK-IVQLAEKSISLDIKVSRHSEKSGGSAGDDRVEITLVG 69
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH---------MKGFNRL 212
V+RAE A +A+ DL + +LR+ K+K+ H G H GF ++
Sbjct: 70 PGP-VIRAESSAADKFAAFDLALGRMLERLRRAKDKKKIHRGNHRPLSLHEAATDGFAQI 128
Query: 213 KVREPVTQVVE-----NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDH 267
+ +++E + A V +D++ V++R K F +TV +A+E +E V H
Sbjct: 129 DLDPADAELIERVNGKSVAPVDQPVAEDDYC-PVVIRTKVFPSQSMTVDQALEHMELVGH 187
Query: 268 DFYGFRNEETGEINIVYKRKAGGYGVI 294
DF+ F + ET ++VY+RK YGVI
Sbjct: 188 DFFLFIDAETDRPSVVYRRKGWDYGVI 214
>gi|288554126|ref|YP_003426061.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
pseudofirmus OF4]
gi|288545286|gb|ADC49169.1| sigma 54 modulation protein/ribosomal protein S30EA [Bacillus
pseudofirmus OF4]
Length = 185
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 108/200 (54%), Gaps = 23/200 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHL-VREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++++VE+KVGK V +V+VR+ V + E+T+
Sbjct: 5 IRGENIEVTPALRDYVEKKVGKLERYFDTTPVADVNVRMQVLNNQ-------HIIEITI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP--VT 219
++R EE +YA+ID V ++R++RK H NR K R+ +
Sbjct: 57 PMPQLLLRGEETHTDMYAAIDNVIEKLERQIRK----------HKTKVNR-KFRQEGSLK 105
Query: 220 QVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +N+ + +EE + DE+ +VR K F + P+ EAI Q++ + H+F+ F N G
Sbjct: 106 YMFKNELEPLEQEEVEPDEDEIEVVRKKRFNLKPMDAEEAILQMDMLGHNFFVFSNAVNG 165
Query: 279 EINIVYKRKAGGYGVIIPKG 298
+ ++VY+RK G YG+I P+
Sbjct: 166 DTSVVYRRKDGKYGLIEPEA 185
>gi|420151290|ref|ZP_14658414.1| ribosomal subunit interface protein [Actinomyces georgiae F0490]
gi|394771831|gb|EJF51553.1| ribosomal subunit interface protein [Actinomyces georgiae F0490]
Length = 217
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 28/217 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R +DV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFRQYVEEKVSKVTQFYPRAQR-IDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAKSADRYAAVDIAAGKLYERLRRLRDRAKDHRRGYARDLTDTE 113
Query: 214 VRE-PVTQVVEN---------------DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSE 257
V E PV E D V E+ +IVR K E PP+TV E
Sbjct: 114 VLEAPVLPKQEESPAEEAAPKPLRSAEDLKVGEAREEQWGDSPIIVRQKVHEAPPMTVDE 173
Query: 258 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
A++Q+ V H F+ F ++ET + +VY R YGV+
Sbjct: 174 ALDQMMMVGHPFFLFVDKETRQPCVVYHRHGWTYGVL 210
>gi|451817485|ref|YP_007453686.1| ribosomal subunit interface protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783464|gb|AGF54432.1| ribosomal subunit interface protein [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 177
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 109/203 (53%), Gaps = 34/203 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVR--LSVRGGEFGKGPRIRRC 156
+K+ + KN+ELTD +K V++K+ K + VD + LSV+ +
Sbjct: 1 MKVTVIAKNMELTDALKEIVQKKISKL---EKYFDSNVDAKATLSVQKSR-------HKI 50
Query: 157 EVTL-FTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLK 213
EVT+ F +GV+ R EE +Y S+DLV ++R++RK K + S HG ++ F L
Sbjct: 51 EVTIPF---NGVILRGEESTSDMYKSLDLVEDKLERQIRKQKTRLSRKHGGSLR-FGELG 106
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
E D +EEE +V++K F + P+ EAI Q++ + H+F+ +
Sbjct: 107 SVE----------DNTAEEEHGK-----LVKVKKFGIKPMNSEEAILQMDLIGHNFFVYE 151
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
+ ++G++N++YKRK G YG++ P
Sbjct: 152 DADSGKVNVIYKRKDGDYGLLEP 174
>gi|365904808|ref|ZP_09442567.1| 30S ribosomal interface protein S30EA [Lactobacillus versmoldensis
KCTC 3814]
Length = 182
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 25/195 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
++G+N+E+T +++ +VE+KV K S+ + V++++ G + EVT
Sbjct: 6 VRGENIEVTPSIREYVEKKVTKMEKYFSPDSNPIAHVNLKIYPSKG--------TKVEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ + +RAEE + +YA IDLV ++R+++K K K + R G + P+
Sbjct: 58 I-PLPYITLRAEEMNDDMYAGIDLVIDKLERQIKKFKTKVNRKDRDKPGIKDI----PLD 112
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
V DA E IVR K + P+ EA+ Q+E + H+F+ F + ET
Sbjct: 113 DVPAEDAKEDESE---------IVRTKRLSLKPMDAEEAVLQMEMLGHEFFIFEDSETNG 163
Query: 280 INIVYKRKAGGYGVI 294
+IVYKR G YG+I
Sbjct: 164 ASIVYKRNDGKYGLI 178
>gi|404330084|ref|ZP_10970532.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 187
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 106/196 (54%), Gaps = 16/196 (8%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKH--SHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
L I+G+N+ +T ++K + E+++GK + K+ + L V + V E + EV
Sbjct: 3 LNIRGENIAVTPSLKEYAEKRIGK-LEKYFGAPLAASARVNMRVHNKE-------QVIEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + ++RAE E +YA+IDLV + ++R+++K K K + R R ++ P
Sbjct: 55 TIPIQGL-LLRAEVGQEDMYAAIDLVVTKLERQIKKYKTKINRKSRQ---DTRQAIQTPG 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ ++ + + + IVR K F + P+T EAI Q+E + H F+ F N + G
Sbjct: 111 AGTLTQTTAAAGQKTEADAPE--IVRRKSFVLKPMTAKEAILQMEMLGHTFFVFNNADNG 168
Query: 279 EINIVYKRKAGGYGVI 294
E ++VY+RK G YG+I
Sbjct: 169 ETSVVYERKDGRYGLI 184
>gi|310778313|ref|YP_003966646.1| ribosomal subunit interface protein [Ilyobacter polytropus DSM
2926]
gi|309747636|gb|ADO82298.1| ribosomal subunit interface protein [Ilyobacter polytropus DSM
2926]
Length = 191
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 105/198 (53%), Gaps = 19/198 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++LII G++L +T+ ++ H E+K+ K + K+ + EVDV LS + G +V
Sbjct: 12 MRLIIHGRHLNVTEPIRLHAEKKINK-IKKYFDNIMEVDVTLSAESLKTGD---YHTADV 67
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
++ + + +A E +YASID V +++++++K KEK D +H G P
Sbjct: 68 LVYMNGNKI-KATATDEDLYASIDEVVDVLEQQVKKHKEKLRD-NKHNAGRKNTIKYNPE 125
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T+ ++ +ED + + + + P+ V EA+ Q+E ++ FY F N +T
Sbjct: 126 TKTID--------KEDSKKIVQTTISAR-----PMFVEEAVMQMEVLNKQFYVFMNADTE 172
Query: 279 EINIVYKRKAGGYGVIIP 296
E+N+VY+R G YG + P
Sbjct: 173 ELNVVYRRNDGDYGHVEP 190
>gi|116873875|ref|YP_850656.1| ribosomal subunit interface protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217963387|ref|YP_002349065.1| ribosomal subunit interface protein [Listeria monocytogenes HCC23]
gi|290892675|ref|ZP_06555667.1| yfiA protein [Listeria monocytogenes FSL J2-071]
gi|315283650|ref|ZP_07871779.1| ribosome-associated factor Y [Listeria marthii FSL S4-120]
gi|386009228|ref|YP_005927506.1| ribosomal subunit interface protein [Listeria monocytogenes L99]
gi|386027840|ref|YP_005948616.1| putative ribosome-associated inhibitor (protein Y) [Listeria
monocytogenes M7]
gi|404408888|ref|YP_006691603.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2376]
gi|422410788|ref|ZP_16487749.1| ribosome-associated factor Y [Listeria monocytogenes FSL F2-208]
gi|422810541|ref|ZP_16858952.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-208]
gi|116742753|emb|CAK21877.1| ribosomal subunit interface protein [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217332657|gb|ACK38451.1| ribosomal subunit interface protein [Listeria monocytogenes HCC23]
gi|290557735|gb|EFD91257.1| yfiA protein [Listeria monocytogenes FSL J2-071]
gi|307572038|emb|CAR85217.1| ribosomal subunit interface protein [Listeria monocytogenes L99]
gi|313606797|gb|EFR83473.1| ribosome-associated factor Y [Listeria monocytogenes FSL F2-208]
gi|313612702|gb|EFR86715.1| ribosome-associated factor Y [Listeria marthii FSL S4-120]
gi|336024421|gb|AEH93558.1| putative ribosome-associated inhibitor (protein Y) [Listeria
monocytogenes M7]
gi|378751431|gb|EHY62021.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-208]
gi|404243037|emb|CBY64437.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2376]
Length = 187
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 101/200 (50%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ + V+RAEE + +YASIDL+ ++R++RK + K D G F V
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGAERDYFAYSDV 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T EN++D E IVR K F + P+ EA+ Q+ + H FY + +
Sbjct: 116 NGS-TPPEENESDFDLE----------IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTD 164
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET NIVY RK G YG+I
Sbjct: 165 AETNGTNIVYSRKDGKYGLI 184
>gi|167628824|ref|YP_001679323.1| sigma 54 modulation protein/ribosomal protein s30ae [Heliobacterium
modesticaldum Ice1]
gi|167591564|gb|ABZ83312.1| sigma 54 modulation protein/ribosomal protein s30ae [Heliobacterium
modesticaldum Ice1]
Length = 174
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 31/197 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++GKN+E+T+ +K +V +++ K + K+ H + L+V G + + EVT+
Sbjct: 5 VRGKNIEVTNALKEYVVKRLSK-LEKYFHNIGGARTTLAVEGD-------MAKVEVTV-P 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG--FNRLKVREPVTQ 220
++RAEE +YA+IDLV +++++ K K S R +KG F
Sbjct: 56 AGDLLLRAEESHPDMYAAIDLVFEKLEKQVDAYKTKLS---RRLKGQGFKEF-------- 104
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+ E + + +VR K F + P+ V EAI Q+ + H F+ F N ET ++
Sbjct: 105 ---------AAAEKNGATEPRVVRSKRFALKPMPVDEAIMQMNLIGHSFFVFSNAETEQV 155
Query: 281 NIVYKRKAGGYGVIIPK 297
N+VY RK G YG+I P+
Sbjct: 156 NVVYLRKDGNYGLIEPE 172
>gi|332798800|ref|YP_004460299.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Tepidanaerobacter acetatoxydans Re1]
gi|438001826|ref|YP_007271569.1| Ribosomal subunit interface protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696535|gb|AEE90992.1| sigma 54 modulation protein/ribosomal protein S30EA
[Tepidanaerobacter acetatoxydans Re1]
gi|432178620|emb|CCP25593.1| Ribosomal subunit interface protein [Tepidanaerobacter
acetatoxydans Re1]
Length = 175
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I GKN +T +K++ E+K+GK V E V LSV K I EV
Sbjct: 1 MKLNISGKNFTVTKALKDYAEKKLGKLERFFDSEV-EAQVTLSVE-----KNRHI--VEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R E + +Y+SID V +++++ K K K + + +++
Sbjct: 53 TMPINGM-LLRGETETYDMYSSIDAVVDKLEKQIEKYKTKTARN-----------IKKKS 100
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
N +E E IVR+K F + P+ + EA+ Q++ + HDF+ F N ET
Sbjct: 101 FDYSGNGKKASNENEPR------IVRIKKFALKPMDLEEAVMQMDLLGHDFFVFSNAETD 154
Query: 279 EINIVYKRKAGGYGVIIP 296
E+N+VYKR+ G YG+I P
Sbjct: 155 EVNVVYKRRDGNYGLIEP 172
>gi|302381104|ref|ZP_07269564.1| ribosomal subunit interface protein [Finegoldia magna
ACS-171-V-Col3]
gi|302311151|gb|EFK93172.1| ribosomal subunit interface protein [Finegoldia magna
ACS-171-V-Col3]
Length = 179
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL K+++LTD +K E K+ K + K+ H ++ V F K R EV
Sbjct: 1 MKLNYVTKDIKLTDDLKQMAESKLHK-LDKYFHDEQQARVV-------FKKEKDKARVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K V+RAEE E + +ID V + R++RK ++ K+++
Sbjct: 53 TMILDKGVVLRAEESNEDIKTAIDKVEDALARQVRK---------------HKTKLQKRF 97
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T+ N ++ EE++ E+ IV+ K F + P+ EAI Q+E +DHDF+ F +
Sbjct: 98 TE--SNSIRFEAVEENNG--KEIPTGSIVKTKEFGIKPMDKEEAIMQMELIDHDFFVFLD 153
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
+T +N+VYKR G YG+++P
Sbjct: 154 SKTNNVNVVYKRNDGNYGLLVP 175
>gi|154483107|ref|ZP_02025555.1| hypothetical protein EUBVEN_00808 [Eubacterium ventriosum ATCC
27560]
gi|149735915|gb|EDM51801.1| ribosomal subunit interface protein [Eubacterium ventriosum ATCC
27560]
Length = 179
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I GKN+E+T+ +++ VEEK+GK + R VDV LSV E ++ EV
Sbjct: 1 MKIKIFGKNIEVTEGIRSAVEEKIGKLDKYFAEETR-VDVTLSVNKNE-------QKVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKL-RKIKEKESDHGRHMKGFNRLKVREP 217
T+ K ++RAEE ++ +Y SID+V I+R+L + + + F +
Sbjct: 53 TIPVKGR-IIRAEEISDDMYVSIDMVEETIERQLVKYKNKIIDKKKSIKEAFTETYIEAD 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E+ ++ + K F + P+ EA ++E + H+F+ F N ET
Sbjct: 112 YEDEDEDQIKIK--------------KTKRFGIKPMDPEEACVEMELLGHNFFVFLNAET 157
Query: 278 GEINIVYKRKAGGYGVIIPK 297
E+N+VYKRK YG+I P+
Sbjct: 158 EEVNVVYKRKGNTYGLIEPE 177
>gi|379714805|ref|YP_005303142.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 316]
gi|386739867|ref|YP_006213047.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 31]
gi|387138126|ref|YP_005694105.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387140144|ref|YP_005696122.1| ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389849872|ref|YP_006352107.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 258]
gi|349734604|gb|AEQ06082.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355391935|gb|AER68600.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377653511|gb|AFB71860.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 316]
gi|384476561|gb|AFH90357.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 31]
gi|388247178|gb|AFK16169.1| Ribosomal protein S30AE family protein [Corynebacterium
pseudotuberculosis 258]
Length = 220
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 28/212 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE- 157
V++ I G+N+E V H E+V + K + +D L+ E P RR E
Sbjct: 15 VQVSITGRNVE----VPEHFAERVNTKLAK----IARLDPTLTFFHVELQHEPNPRRAEQ 66
Query: 158 -----VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGF 209
+T K H + RAE ++ YA+++ + ++R LRK+K + S R KG
Sbjct: 67 SDRIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRSISLSGHRAPKGA 125
Query: 210 NRLKVREPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQL 262
E V + AD Q + D + D V +VR K P++V +A+ ++
Sbjct: 126 GETAA-ELVHEAETARADSQYDH--DPYADSVEEVLPGRVVRDKEHPSTPMSVDDALSEM 182
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 183 ELVGHDFYMFVNEETGRPSVVYRRHAFDYGLI 214
>gi|304439051|ref|ZP_07398970.1| ribosomal subunit interface protein [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372410|gb|EFM25997.1| ribosomal subunit interface protein [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 174
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 38/202 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KLI+ GKNL LTD +K E+K+ K + EV+ R F +R EV
Sbjct: 1 MKLILTGKNLTLTDDLKALAEKKLSKL---DKYFADEVEAR-----AVFSHIKNRKRIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F K +RAEE ++ + S+D V ++ R++RK K RLK +
Sbjct: 53 TVFLK-GATLRAEETSDDMETSMDKVVDVLSRQVRKYK-------------TRLKNKSQE 98
Query: 219 TQVVENDADVQSEEEDDNFVDEV------IVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+ + D NF + IV+ K F++ P+ EA+ Q+E ++HDF+ +
Sbjct: 99 KETIRFD----------NFEEPKEEPKEKIVKRKRFKIHPMFEEEAVVQMELLNHDFFVY 148
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
NE+ G ++Y+R G YG+I
Sbjct: 149 INEKDGTPAVIYRRDDGDYGII 170
>gi|184154808|ref|YP_001843148.1| ribosomal subunit interface protein [Lactobacillus fermentum IFO
3956]
gi|227514373|ref|ZP_03944422.1| ribosome-associated inhibitor protein Y [Lactobacillus fermentum
ATCC 14931]
gi|260663164|ref|ZP_05864056.1| ribosomal subunit interface protein [Lactobacillus fermentum
28-3-CHN]
gi|183226152|dbj|BAG26668.1| ribosomal subunit interface protein [Lactobacillus fermentum IFO
3956]
gi|227087239|gb|EEI22551.1| ribosome-associated inhibitor protein Y [Lactobacillus fermentum
ATCC 14931]
gi|260552356|gb|EEX25407.1| ribosomal subunit interface protein [Lactobacillus fermentum
28-3-CHN]
Length = 181
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 106/203 (52%), Gaps = 33/203 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-------VLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+TD ++++V +++ K V ++H V L V
Sbjct: 2 LKFNIRGENVEVTDAIRDYVVKRISKLERFLEPNVEANAH------VNLKVYSN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y S+DLV+ ++R++RK K K + R KG+
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSVDLVTDKLERQIRKYKTKVNRKSRE-KGYKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L+ + ++ VE ++ IVR K + P+ EA+ Q++ + HDF+
Sbjct: 108 LEFVDTPSEEVEASDSLK------------IVRTKQIPLKPMDSEEAVLQMDMLGHDFFV 155
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
+++ ET +IVY+R G YG+I
Sbjct: 156 YQDAETNGTSIVYRRNDGRYGLI 178
>gi|187777239|ref|ZP_02993712.1| hypothetical protein CLOSPO_00786 [Clostridium sporogenes ATCC
15579]
gi|187774167|gb|EDU37969.1| ribosomal subunit interface protein [Clostridium sporogenes ATCC
15579]
Length = 175
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 108/202 (53%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+E+T+ ++ VE+K+ K + V LSV + + EV
Sbjct: 1 MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVV-ATATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ HGV+ R EE E +YASID+V ++R++RK K K + H ++ F +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLERQIRKQKTKLQRNIHDGSLR-FQYI--- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
D +S E + IV+ K F M P++ EA+ Q+E + H+F+ ++N
Sbjct: 107 ----------PDYESGENKET----QIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNA 152
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+T E+N++Y+RK G YG+I P+
Sbjct: 153 DTEEVNVIYRRKDGNYGLIEPE 174
>gi|259046382|ref|ZP_05736783.1| ribosomal subunit interface protein [Granulicatella adiacens ATCC
49175]
gi|259036927|gb|EEW38182.1| ribosomal subunit interface protein [Granulicatella adiacens ATCC
49175]
Length = 186
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T+ ++ + E+K+ K + + V L V + K EVT+
Sbjct: 12 IRGENIEVTEAIRQYAEKKISKLEKYFTDVANATAYVNLKVYTEKTAK------VEVTI- 64
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +Y SIDLV ++R++RK K K + R KGF+ + P
Sbjct: 65 PLPYLVLRAEETSIDLYGSIDLVVDKLERQVRKHKTKINRKSRE-KGFDIVLPTLP---- 119
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
++ EE++ ++ IVR K ++ P+ EA+ Q+ + H+F+ +++ ET E N
Sbjct: 120 -------EAPEEEETGLE--IVRTKRIDLKPMDSEEAVLQMNMLGHNFFIYQDAETNETN 170
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 171 IVYRRKDGKYGLI 183
>gi|238854886|ref|ZP_04645216.1| ribosome-associated protein Y [Lactobacillus jensenii 269-3]
gi|260664173|ref|ZP_05865026.1| ribosome-associated protein Y [Lactobacillus jensenii SJ-7A-US]
gi|238832676|gb|EEQ24983.1| ribosome-associated protein Y [Lactobacillus jensenii 269-3]
gi|260562059|gb|EEX28028.1| ribosome-associated protein Y [Lactobacillus jensenii SJ-7A-US]
Length = 181
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 55 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE+ + D IVR K + P+ EAI Q++ ++HDF+ F++ E
Sbjct: 113 PA-----------EEEKPTSEFD--IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 160 TNGTSVVYRRNDGRYGLI 177
>gi|313472387|ref|ZP_07812879.1| ribosomal subunit interface protein [Lactobacillus jensenii 1153]
gi|313449137|gb|EEQ68754.2| ribosomal subunit interface protein [Lactobacillus jensenii 1153]
Length = 187
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 108/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L +V V L V K
Sbjct: 8 LKYNVRGENIEVTEALRSYVEKRLEK-LEKYFELTSDVIAHVNLKVYKNHDAK------V 60
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE ++ +Y SID VS ++R++RK K + + GR KG +
Sbjct: 61 EVTI-PLPYLVLRAEETSDDMYRSIDFVSDKLERQIRKYKTRVNRKGRE-KGVKDFFIET 118
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE+ + D IVR K + P+ EAI Q++ ++HDF+ F++ E
Sbjct: 119 PA-----------EEEKPTSEFD--IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFQDAE 165
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 166 TNGTSVVYRRNDGRYGLI 183
>gi|329120946|ref|ZP_08249577.1| ribosomal subunit interface protein [Dialister micraerophilus DSM
19965]
gi|327471108|gb|EGF16562.1| ribosomal subunit interface protein [Dialister micraerophilus DSM
19965]
Length = 176
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 102/197 (51%), Gaps = 26/197 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I+GKNLE+T + ++VE+ GK + + + + + +R + CEV
Sbjct: 1 MELKIRGKNLEVTKALHSYVEKHTGKI---QRYFDKPIKMNVLMRISN-----KTNTCEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+F + GV+ R E ++ +Y SIDLV ++R++ K K + + R F++ K RE
Sbjct: 53 TVFVE--GVILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLARRYREENVFSK-KFREE 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E + IV+ K F + P++ EAI Q+ V HDF+ F N ET
Sbjct: 110 KETFGEEEF--------------EIVKTKKFNINPMSPEEAILQMNLVGHDFFMFFNSET 155
Query: 278 GEINIVYKRKAGGYGVI 294
+I +VYKR G YG+I
Sbjct: 156 SDIAVVYKRNDGKYGLI 172
>gi|406671409|ref|ZP_11078648.1| ribosomal subunit interface protein [Facklamia hominis CCUG 36813]
gi|405580659|gb|EKB54718.1| ribosomal subunit interface protein [Facklamia hominis CCUG 36813]
Length = 185
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD-VRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T ++ + E+KV K + + V L V + K EVT+
Sbjct: 6 VRGENIEVTQAIREYAEKKVSKLERFFTDVPNATAYVNLKVYPDKTAK------AEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
V+RAEE +YASID V ++R++RK K K + R KG + +
Sbjct: 59 PLSFLVLRAEETNPDLYASIDFVVDKLERQVRKYKTKINRKSRE-KGLD--------FAL 109
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
D V+ E D D IVR K E+ P+ EA+ Q+ + HDF+ + + +T EIN
Sbjct: 110 PHLDTPVKEESSDS---DLEIVRSKKIELKPMDSEEAVLQMNMLGHDFFVYHDRDTDEIN 166
Query: 282 IVYKRKAGGYGVI 294
IVY+RK G YG+I
Sbjct: 167 IVYRRKDGRYGLI 179
>gi|383776047|ref|YP_005460613.1| putative S30AE family protein [Actinoplanes missouriensis 431]
gi|381369279|dbj|BAL86097.1| putative S30AE family protein [Actinoplanes missouriensis 431]
Length = 206
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 40/219 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K L+R VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYREHVAEKLSKVERYDPKLMR-VDVELF-----HERNPRQSDTCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMK------ 207
R E+T+ T+ VVRAE A+ YA++D + + +LR+ ++ H GRH
Sbjct: 55 RVEITVMTRG-PVVRAEAQAQDFYAALDCAINKLDGRLRRSADRRRVHRGRHAPVSVAAA 113
Query: 208 ----------GFNRLKVREPV--TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTV 255
G V EP T++ E+ AD IVR K P+TV
Sbjct: 114 TANLPTDVSPGRTATLVAEPALDTELAEHGADQPWR----------IVREKEHSAEPMTV 163
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ Q+E V HDFY F+++E+G ++VY+R+ YG++
Sbjct: 164 DDALFQMELVGHDFYLFQDKESGRPSVVYRRRGYDYGIL 202
>gi|16801716|ref|NP_471984.1| hypothetical protein lin2655 [Listeria innocua Clip11262]
gi|16804549|ref|NP_466034.1| hypothetical protein lmo2511 [Listeria monocytogenes EGD-e]
gi|46908683|ref|YP_015072.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093713|ref|ZP_00231465.1| ribosomal subunit interface protein [Listeria monocytogenes str. 4b
H7858]
gi|47096104|ref|ZP_00233705.1| ribosomal subunit interface protein [Listeria monocytogenes str.
1/2a F6854]
gi|226225059|ref|YP_002759166.1| Conserved hypothetical proteins like to B. subtilis YvyD protein
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|254825367|ref|ZP_05230368.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-194]
gi|254828086|ref|ZP_05232773.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N3-165]
gi|254853960|ref|ZP_05243308.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-503]
gi|254913410|ref|ZP_05263422.1| ribosomal subunit interface protein [Listeria monocytogenes J2818]
gi|254932248|ref|ZP_05265607.1| ribosomal subunit interface protein [Listeria monocytogenes
HPB2262]
gi|254937791|ref|ZP_05269488.1| ribosomal subunit interface protein [Listeria monocytogenes F6900]
gi|255025544|ref|ZP_05297530.1| hypothetical protein LmonocytFSL_02963 [Listeria monocytogenes FSL
J2-003]
gi|255028457|ref|ZP_05300408.1| hypothetical protein LmonL_03211 [Listeria monocytogenes LO28]
gi|255521850|ref|ZP_05389087.1| hypothetical protein LmonocFSL_11602 [Listeria monocytogenes FSL
J1-175]
gi|284802949|ref|YP_003414814.1| hypothetical protein LM5578_2706 [Listeria monocytogenes 08-5578]
gi|284996090|ref|YP_003417858.1| hypothetical protein LM5923_2655 [Listeria monocytogenes 08-5923]
gi|289435772|ref|YP_003465644.1| ribosomal subunit interface protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|300764990|ref|ZP_07074978.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N1-017]
gi|386044813|ref|YP_005963618.1| sigma-54 modulation protein [Listeria monocytogenes 10403S]
gi|386048177|ref|YP_005966509.1| ribosomal subunit interface protein [Listeria monocytogenes J0161]
gi|386051482|ref|YP_005969473.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-561]
gi|386054700|ref|YP_005972258.1| ribosomal subunit interface protein [Listeria monocytogenes Finland
1998]
gi|386733196|ref|YP_006206692.1| ribosomal subunit interface protein [Listeria monocytogenes
07PF0776]
gi|404282069|ref|YP_006682967.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2755]
gi|404285004|ref|YP_006685901.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2372]
gi|404287882|ref|YP_006694468.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|404411754|ref|YP_006697342.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC5850]
gi|404414529|ref|YP_006700116.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC7179]
gi|405750856|ref|YP_006674322.1| ribosomal subunit interface protein [Listeria monocytogenes ATCC
19117]
gi|405753719|ref|YP_006677184.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2378]
gi|405756623|ref|YP_006680087.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2540]
gi|405759561|ref|YP_006688837.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2479]
gi|406705246|ref|YP_006755600.1| ribosomal subunit interface protein [Listeria monocytogenes L312]
gi|417316293|ref|ZP_12102943.1| ribosomal subunit interface protein [Listeria monocytogenes J1816]
gi|417318499|ref|ZP_12105079.1| ribosomal subunit interface protein [Listeria monocytogenes J1-220]
gi|422414022|ref|ZP_16490981.1| ribosome-associated factor Y [Listeria innocua FSL S4-378]
gi|422416994|ref|ZP_16493951.1| ribosome-associated factor Y [Listeria innocua FSL J1-023]
gi|422420069|ref|ZP_16497024.1| ribosome-associated factor Y [Listeria seeligeri FSL N1-067]
gi|422423221|ref|ZP_16500174.1| ribosome-associated factor Y [Listeria seeligeri FSL S4-171]
gi|424824261|ref|ZP_18249274.1| Sigma 54 modulation protein [Listeria monocytogenes str. Scott A]
gi|16411999|emb|CAD00589.1| lmo2511 [Listeria monocytogenes EGD-e]
gi|16415191|emb|CAC97881.1| lin2655 [Listeria innocua Clip11262]
gi|46881955|gb|AAT05249.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 4b str. F2365]
gi|47015565|gb|EAL06497.1| ribosomal subunit interface protein [Listeria monocytogenes str.
1/2a F6854]
gi|47017907|gb|EAL08688.1| ribosomal subunit interface protein [Listeria monocytogenes str. 4b
H7858]
gi|225877521|emb|CAS06235.1| Conserved hypothetical proteins like to B. subtilis YvyD protein
[Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|258600470|gb|EEW13795.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N3-165]
gi|258607350|gb|EEW19958.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-503]
gi|258610394|gb|EEW23002.1| ribosomal subunit interface protein [Listeria monocytogenes F6900]
gi|284058511|gb|ADB69452.1| hypothetical protein LM5578_2706 [Listeria monocytogenes 08-5578]
gi|284061557|gb|ADB72496.1| hypothetical protein LM5923_2655 [Listeria monocytogenes 08-5923]
gi|289172016|emb|CBH28562.1| ribosomal subunit interface protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|293583805|gb|EFF95837.1| ribosomal subunit interface protein [Listeria monocytogenes
HPB2262]
gi|293591416|gb|EFF99750.1| ribosomal subunit interface protein [Listeria monocytogenes J2818]
gi|293594610|gb|EFG02371.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
J1-194]
gi|300514290|gb|EFK41349.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
N1-017]
gi|313617175|gb|EFR89689.1| ribosome-associated factor Y [Listeria innocua FSL S4-378]
gi|313622367|gb|EFR92840.1| ribosome-associated factor Y [Listeria innocua FSL J1-023]
gi|313631963|gb|EFR99088.1| ribosome-associated factor Y [Listeria seeligeri FSL N1-067]
gi|313636335|gb|EFS02123.1| ribosome-associated factor Y [Listeria seeligeri FSL S4-171]
gi|328465117|gb|EGF36385.1| ribosomal subunit interface protein [Listeria monocytogenes J1816]
gi|328471122|gb|EGF42026.1| ribosomal subunit interface protein [Listeria monocytogenes J1-220]
gi|332312941|gb|EGJ26036.1| Sigma 54 modulation protein [Listeria monocytogenes str. Scott A]
gi|345535168|gb|AEO04609.1| ribosomal subunit interface protein [Listeria monocytogenes J0161]
gi|345538047|gb|AEO07487.1| sigma-54 modulation protein [Listeria monocytogenes 10403S]
gi|346425328|gb|AEO26853.1| ribosomal subunit interface protein [Listeria monocytogenes FSL
R2-561]
gi|346647351|gb|AEO39976.1| ribosomal subunit interface protein [Listeria monocytogenes Finland
1998]
gi|384391954|gb|AFH81024.1| ribosomal subunit interface protein [Listeria monocytogenes
07PF0776]
gi|404220056|emb|CBY71420.1| ribosomal subunit interface protein [Listeria monocytogenes ATCC
19117]
gi|404222919|emb|CBY74282.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2378]
gi|404225823|emb|CBY77185.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2540]
gi|404228704|emb|CBY50109.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2755]
gi|404231580|emb|CBY52984.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC5850]
gi|404234506|emb|CBY55909.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2372]
gi|404237443|emb|CBY58845.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC2479]
gi|404240228|emb|CBY61629.1| ribosomal subunit interface protein [Listeria monocytogenes
SLCC7179]
gi|404246811|emb|CBY05036.1| ribosomal subunit interface protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406362276|emb|CBY68549.1| ribosomal subunit interface protein [Listeria monocytogenes L312]
gi|441472296|emb|CCQ22051.1| Uncharacterized protein SE_0534 [Listeria monocytogenes]
gi|441475438|emb|CCQ25192.1| Uncharacterized protein SE_0534 [Listeria monocytogenes N53-1]
Length = 187
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 100/200 (50%), Gaps = 21/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ + V+RAEE + +YASIDL+ ++R++RK + K D G F V
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRDKGAERDYFAYSDV 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T EN+ D E IVR K F + P+ EA+ Q+ + H FY + +
Sbjct: 116 NGS-TPPEENEGDFDLE----------IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTD 164
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET NIVY RK G YG+I
Sbjct: 165 AETNGTNIVYSRKDGKYGLI 184
>gi|414157016|ref|ZP_11413317.1| ribosome-associated factor Y [Streptococcus sp. F0442]
gi|410870009|gb|EKS17969.1| ribosome-associated factor Y [Streptococcus sp. F0442]
Length = 180
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRVKSGAGKL----FT 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
VVE A + +VR K ++ P+ + EAI Q+E + HDF+ +R+ E
Sbjct: 112 DAVVEEAATTEK-----------VVRSKTIDLEPMDIEEAILQMELLAHDFFIYRDAEDN 160
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 161 TTNVIYRREDGDIGLL 176
>gi|254304059|ref|ZP_04971417.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|422339678|ref|ZP_16420636.1| putative sigma(54) modulation protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|148324251|gb|EDK89501.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|355370821|gb|EHG18200.1| putative sigma(54) modulation protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 181
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMEGLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D V+ EE+ + ++ +VR+ + + P+ +SEAI QLE ++ F+ F N ET
Sbjct: 106 RKKSYSFDYIVEPEEKLSD--EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNSET 162
Query: 278 GEINIVYKRKAGGYGVI 294
G++ +VYKRK G YGVI
Sbjct: 163 GKMAVVYKRKDGDYGVI 179
>gi|194468148|ref|ZP_03074134.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
reuteri 100-23]
gi|423336078|ref|ZP_17313829.1| ribosomal subunit interface protein [Lactobacillus reuteri ATCC
53608]
gi|194453001|gb|EDX41899.1| sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus
reuteri 100-23]
gi|337729281|emb|CCC04408.1| ribosomal subunit interface protein [Lactobacillus reuteri ATCC
53608]
Length = 182
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 109/203 (53%), Gaps = 32/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+T++++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTESIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L + + +D D ++E+DD IVR K + P+ EA+ Q++ + H+F+
Sbjct: 108 L-------EFISSDND-GADEQDDELK---IVRTKQVSLKPMDPEEAVLQMDMLGHNFFI 156
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F++ ET +IVY+R G YG+I
Sbjct: 157 FQDAETNGTSIVYRRNDGRYGLI 179
>gi|251783075|ref|YP_002997378.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|417928290|ref|ZP_12571678.1| ribosomal subunit interface protein [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|242391705|dbj|BAH82164.1| ribosome-associated factor Y [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|340766164|gb|EGR88690.1| ribosomal subunit interface protein [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
Length = 182
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 109/203 (53%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
QV + + + VDE +VR K + P+ V EA Q+E + HDF+ + +
Sbjct: 107 GQVFTTEFEAEQ-------VDETPEVKVVRTKNLTLKPMDVEEARLQMELLGHDFFIYTD 159
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E GE NI+Y+R+ G G+I K
Sbjct: 160 AEDGETNILYRREDGDLGLIEAK 182
>gi|239616947|ref|YP_002940269.1| sigma 54 modulation protein/ribosomal protein S30EA [Kosmotoga
olearia TBF 19.5.1]
gi|239505778|gb|ACR79265.1| sigma 54 modulation protein/ribosomal protein S30EA [Kosmotoga
olearia TBF 19.5.1]
Length = 178
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 26/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
+K I K++ +TDT+K H+++K+ K + H +DVR+ G + +
Sbjct: 1 MKYNIYAKDIPVTDTMKEHIDKKLAKVFRAIDEDHFT-SMDVRVMKERGLY-------KV 52
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+T VVR EE + Y ++ +++ ++R++++ KE+ R++ R
Sbjct: 53 EITGHLPGF-VVRVEERGDDFYGVVEAIANTLERRIKRYKER-----------ARMRHRA 100
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+++E +V EEE I R K F + P+ + EA+ Q+E + H F+ FRN +
Sbjct: 101 SAKEILEAIPEVPDEEERGL----QITRTKRFSIKPMKIDEALLQMEMLGHTFFVFRNVD 156
Query: 277 TGEINIVYKRKAGGYGVI 294
T E+N++Y RK G G+I
Sbjct: 157 TDEVNVLYLRKNGTVGLI 174
>gi|169337981|ref|ZP_02620581.2| ribosomal subunit interface protein [Clostridium botulinum C str.
Eklund]
gi|169295933|gb|EDS78066.1| ribosomal subunit interface protein [Clostridium botulinum C str.
Eklund]
Length = 184
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 111/197 (56%), Gaps = 28/197 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ GKN+++T+ +++ VE K+ K + K+ EV LSV+ + +I EVT+
Sbjct: 11 VNGKNIQVTEGLRDAVERKLSK-LDKYFDPNVEVITTLSVQ-----RNSQI--VEVTI-- 60
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVREPVT 219
+GV+ RAE+ +YA+ID+V ++R++RK K K HG +K F + P
Sbjct: 61 PFNGVILRAEDSNSDMYAAIDIVLEKLERQIRKQKTKLQRRKHGDALK-FQFIPEYVP-- 117
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
+++++ ++ IV+ K F + P++ EA+ Q+E + H+F+ F N +T E
Sbjct: 118 ------------KDNEDSIESKIVKTKRFAIKPMSKEEAVLQMELLGHNFFVFTNGDTEE 165
Query: 280 INIVYKRKAGGYGVIIP 296
+N++YKRK G YG+I P
Sbjct: 166 VNVLYKRKDGQYGLIEP 182
>gi|359410415|ref|ZP_09202880.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
sp. DL-VIII]
gi|357169299|gb|EHI97473.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
sp. DL-VIII]
Length = 177
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 109/200 (54%), Gaps = 28/200 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ + KN+ELTD ++ V++K+ K S V E LSV+ R ++
Sbjct: 1 MRVTVIAKNMELTDALREIVQKKISKLEKYFSGNV-EAKATLSVQKN---------RHKI 50
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLKVRE 216
+ +GV+ R EE +Y S+DLV ++R++RK K + S H +K F +
Sbjct: 51 EVMIPFNGVILRGEEATSDMYKSLDLVEDKLERQIRKQKTRLSRKHSESLK-FAEI---- 105
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
N+ D+++EEE+ +V++K F + P+ EAI Q++ + H+F+ +++ +
Sbjct: 106 -------NNIDIKAEEEEHG----KLVKVKKFGVKPMNSEEAILQMDLLGHNFFVYQDAD 154
Query: 277 TGEINIVYKRKAGGYGVIIP 296
+ ++N+VYKRK G YG++ P
Sbjct: 155 SSKVNVVYKRKDGDYGLLEP 174
>gi|241889111|ref|ZP_04776415.1| ribosome-associated factor Y [Gemella haemolysans ATCC 10379]
gi|241864360|gb|EER68738.1| ribosome-associated factor Y [Gemella haemolysans ATCC 10379]
Length = 181
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 109/193 (56%), Gaps = 22/193 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+NLE+T ++ +VE KV K + K+ E +V + + + K ++ E+T+
Sbjct: 6 VRGENLEITQAIREYVENKVSK-LEKYFADSLEANVYANAKVYKNNK----KKIEITVPL 60
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ GV +RAEE E +YA++DLV ++R++RK K K + GR KGF E +
Sbjct: 61 R--GVTLRAEETNEDLYAAVDLVVDKLERQMRKHKTKINRKGRE-KGF----AEEIILTS 113
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+A+ + + + ++K ++ P+T EA+ Q+E + HDF+ F + T EI+
Sbjct: 114 ELEEAEETTLD---------LGKVKQLKVEPMTREEAVFQMELLGHDFFAFLDNTTNEIS 164
Query: 282 IVYKRKAGGYGVI 294
+VYKR+ GYGV+
Sbjct: 165 VVYKRRDTGYGVL 177
>gi|223042827|ref|ZP_03612875.1| ribosomal subunit interface protein [Staphylococcus capitis SK14]
gi|417905703|ref|ZP_12549502.1| ribosomal subunit interface protein [Staphylococcus capitis VCU116]
gi|222443681|gb|EEE49778.1| ribosomal subunit interface protein [Staphylococcus capitis SK14]
gi|341598597|gb|EGS41097.1| ribosomal subunit interface protein [Staphylococcus capitis VCU116]
Length = 191
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 24/203 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL---VREVDVRLSVRGGEFGKGPRIRR 155
++ I G NL +TD ++N++E+K+GK +++ V V V+ +
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGKLERYFNNVPNAVAHVKVKTYSNSAT--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNR 211
EVT+ K +RAEE + +YA IDL++ ++R++RK K K D G
Sbjct: 54 IEVTI-PLKDVTLRAEERHDDLYAGIDLITGKLERQVRKYKTRVNRKHRDRGDQEVFVAE 112
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
++ P +V EE + + I+R K F + P+ EA+ Q+ + HDF+
Sbjct: 113 VQEASP--------GEVSGAEESVSDSEIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFI 164
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F + ET +IVY RK G YG+I
Sbjct: 165 FTDRETDGTSIVYTRKDGKYGLI 187
>gi|373855711|ref|ZP_09598457.1| ribosomal subunit interface protein [Bacillus sp. 1NLA3E]
gi|372454780|gb|EHP28245.1| ribosomal subunit interface protein [Bacillus sp. 1NLA3E]
Length = 183
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + D ++V + + EVT+
Sbjct: 5 IRGENIEVTPAIREYVERKIAKL---ERYFTETPDAHVNVNLRVYNDKKS--KVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
V+RAEE E +YA+IDL+ ++R++RK K K + R + T V
Sbjct: 59 MTQLVLRAEETNEDMYAAIDLIVDKLERQIRKHKTKVNRKFREKGSLTSM-----FTVVE 113
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ V EE + +VR K F++ P+ EAI Q+ + H FY F N N+
Sbjct: 114 DSSLPVVDEEHELE-----LVRTKRFDLKPMDSEEAILQMNMLGHSFYVFTNSANHNTNV 168
Query: 283 VYKRKAGGYGVI 294
VYKRK G YG+I
Sbjct: 169 VYKRKDGRYGLI 180
>gi|429758551|ref|ZP_19291065.1| ribosomal subunit interface protein [Actinomyces sp. oral taxon 181
str. F0379]
gi|429173265|gb|EKY14796.1| ribosomal subunit interface protein [Actinomyces sp. oral taxon 181
str. F0379]
Length = 218
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + ++EEK+ K + R VDV L+ K PR
Sbjct: 1 MDITVAARNAEIHPNFRAYIEEKLAKVTQFYPRAQR-VDVELT-----HQKNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGF----- 209
R E+T+F K ++RAE ++ YA++D+ + + +LR+++++ DH R +
Sbjct: 55 RIELTVFGKG-PIIRAEAESADRYAAVDIAAGKLFERLRRMRDRAKDHHRTEEILAPDLD 113
Query: 210 ---------NRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIE 260
L + P + D V E+ +IVR K E P++V EA+
Sbjct: 114 VLPASVGEEEELAEQAPTSLKSAGDLKVGEAREEQLGDSPIIVRQKVHETVPMSVDEALN 173
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
Q+E V H F+ F +EET + +VY R YGV+
Sbjct: 174 QMELVGHPFFLFVDEETMQPCVVYHRHGWTYGVL 207
>gi|339480905|ref|ZP_08656564.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc pseudomesenteroides KCTC 3652]
gi|399516855|ref|ZP_10758437.1| Ribosomal subunit interface protein [Leuconostoc
pseudomesenteroides 4882]
gi|398648304|emb|CCJ66464.1| Ribosomal subunit interface protein [Leuconostoc
pseudomesenteroides 4882]
Length = 181
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 108/193 (55%), Gaps = 22/193 (11%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRL-SVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+TD ++++VE+++ K + ++ + +V L + R GK EVT+
Sbjct: 6 VRGENIEVTDAIRDYVEKRLTK-LNRYIEESAKANVNLRTYRSDNSGK------VEVTIV 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAE+ +YA++D VS I+R++RK K K + R GF + + + +
Sbjct: 59 LP-YVVLRAEDTNADMYAAVDNVSEKIERQIRKYKTKINRKSRET-GFKGIDSHDEIPET 116
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+D+ +Q IVR K ++ P++ EA Q++ ++HDF+ F++ E+ +
Sbjct: 117 DVDDSALQ------------IVRTKQVDLKPMSPEEAALQMDLLEHDFFIFKDAESNTDS 164
Query: 282 IVYKRKAGGYGVI 294
++YKR G YG++
Sbjct: 165 VIYKRTDGKYGLL 177
>gi|338733797|ref|YP_004672270.1| hypothetical protein SNE_A19020 [Simkania negevensis Z]
gi|336483180|emb|CCB89779.1| putative uncharacterized protein [Simkania negevensis Z]
Length = 208
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 105/201 (52%), Gaps = 19/201 (9%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+E+T +++++EEK+ K +H++ EVDVRL V+ ++ +
Sbjct: 19 GKNIEITKPIRDYIEEKISKIEKITNHII-EVDVRLDVQ--------KLNHTVDIILKFS 69
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV--------RE 216
H V+ E +Y++ID +Q KL K K + DH H +G + ++ R+
Sbjct: 70 HFRVKVGAVTENMYSAIDKAFERLQTKLLKWKSRIQDH--HARGVSVTEMEINVLEHGRD 127
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V Q+ + D +++ ++ + +++ K + LT+ EA+ ++E D F +R+EE
Sbjct: 128 EVEQINQEITDANNQKLEEQYSLPTVIKKKKRPLKHLTLDEAVMKMELSDDHFMVYRSEE 187
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
+ ++Y+R+ G YG+I P+
Sbjct: 188 EQNLKVIYRRRDGSYGIIAPE 208
>gi|336400400|ref|ZP_08581179.1| hypothetical protein HMPREF0404_00470 [Fusobacterium sp. 21_1A]
gi|336162588|gb|EGN65552.1| hypothetical protein HMPREF0404_00470 [Fusobacterium sp. 21_1A]
Length = 181
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 31/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R K+++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKIQDDT 105
Query: 219 TQ-------VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ +VE + E++ +VR+ + + P+ +SEAI QLE ++ F+
Sbjct: 106 RKRSYSFDYIVEAGEKLSDEKK--------LVRV-YLPLKPMEISEAILQLEYLNRVFFA 156
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F N ETG++ +VYKRK G YGVI
Sbjct: 157 FTNSETGKMAVVYKRKDGDYGVI 179
>gi|443673700|ref|ZP_21138755.1| S30AE family protein [Rhodococcus sp. AW25M09]
gi|443413702|emb|CCQ17093.1| S30AE family protein [Rhodococcus sp. AW25M09]
Length = 222
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 38/217 (17%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGK------------AVLKHSHLVREVDVRLSVRG 144
++ ++++G+N+E+ D + +V EK+ + L+H R+ V
Sbjct: 22 TNADVVVKGRNVEIPDHFRVYVSEKLARLERFDPSIYLFDVELQHERNRRQAKACQRVEI 81
Query: 145 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR 204
GKGP VVRAE A++ YA+++ V+S ++ +LR+ K++ H
Sbjct: 82 TAKGKGP---------------VVRAEACADSFYAALEAVTSKLENRLRRTKDRRKVH-- 124
Query: 205 HMKGFNR-LKVREPVTQVVENDA-DVQSEEEDDNFVDEV-----IVRMKFFEMPPLTVSE 257
G R + V E ++ E+D + E + ++F D+ IVR K P++V +
Sbjct: 125 --YGEKRPVSVAEATAELAEDDTLALDPETKLESFDDDQSGPGHIVRTKIHSAAPMSVDD 182
Query: 258 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
A+ ++E V HDF+ F + T ++VY+R A YG+I
Sbjct: 183 ALYEMELVGHDFFLFHDSATDRPSVVYRRHAFDYGLI 219
>gi|417067162|ref|ZP_11949911.1| ribosomal subunit interface protein [Lactobacillus rhamnosus MTCC
5462]
gi|328466530|gb|EGF37672.1| ribosomal subunit interface protein [Lactobacillus rhamnosus MTCC
5462]
Length = 165
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 168 VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDAD 227
+RAEE + +YASIDLV+ ++R++RK K K + R KGF ++ + A+
Sbjct: 45 LRAEETSPDLYASIDLVTDKLERQVRKFKTKINRKSRE-KGFGQIDIDSNAP------AE 97
Query: 228 VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRK 287
+ E+DDN +VR K + P+ EAI Q++ + H+F+ F + +T +IVYKR+
Sbjct: 98 PKPAEDDDNLK---VVRTKRVSLKPMDSQEAILQMDMLGHNFFIFEDADTNGTSIVYKRR 154
Query: 288 AGGYGVI 294
G YG+I
Sbjct: 155 DGRYGLI 161
>gi|312898759|ref|ZP_07758148.1| ribosomal subunit interface protein [Megasphaera micronuciformis
F0359]
gi|310620190|gb|EFQ03761.1| ribosomal subunit interface protein [Megasphaera micronuciformis
F0359]
Length = 178
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 104/200 (52%), Gaps = 34/200 (17%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSH-LVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++GKNLE+T +K++V LKH +++ D ++++ + R + E+TL
Sbjct: 9 VRGKNLEITAALKDYV--------LKHEKKIMKYFDTDVALQAMLSVEKER-KIAELTL- 58
Query: 162 TKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK--GFNRLKVREPV 218
+ GVV R E E +YA+ID+V + R++ K K K + R +K F V E
Sbjct: 59 -RVDGVVLRVVETGEDMYAAIDIVFDKMVRQIHKYKTKLA---RRIKDGSFKPTLVTE-- 112
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
S E D+ F IVR K F P+ V EAI Q+ V HDF+ F N +T
Sbjct: 113 -----------SPESDEAFE---IVRTKTFTPQPMDVEEAILQMNLVGHDFFVFLNADTD 158
Query: 279 EINIVYKRKAGGYGVIIPKG 298
+I++VYKRK G YG+I P+
Sbjct: 159 KISVVYKRKHGKYGLIEPEA 178
>gi|304386242|ref|ZP_07368575.1| ribosomal subunit interface protein [Pediococcus acidilactici DSM
20284]
gi|304327599|gb|EFL94826.1| ribosomal subunit interface protein [Pediococcus acidilactici DSM
20284]
Length = 197
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 107/193 (55%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T++++++VE+++GK + V L V R + EVT+
Sbjct: 19 VRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQ------DRTAKVEVTI- 71
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV+ ++R++RK K K + R G+ +++ Q
Sbjct: 72 PLPYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRET-GYKGVEI----PQE 126
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ + ++ E D IVR K + P+ EAI Q++ + H+F+ + + +TG ++
Sbjct: 127 DAREDEEEASEFD-------IVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVD 179
Query: 282 IVYKRKAGGYGVI 294
IVY+R G YG+I
Sbjct: 180 IVYRRHDGRYGLI 192
>gi|29831610|ref|NP_826244.1| hypothetical protein SAV_5067 [Streptomyces avermitilis MA-4680]
gi|29608726|dbj|BAC72779.1| putative sigma 54 modulation protein/ribosomal protein S30EA
[Streptomyces avermitilis MA-4680]
Length = 286
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + + K V +DV +S + R R
Sbjct: 56 CVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVSKEPNPR-QADRCDRV 114
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+TL ++ V+RAE A YA++DL + ++ +LRK E + H R +G RL +
Sbjct: 115 EITLRSRGP-VIRAEAAASDPYAALDLAADKLEARLRK--EHDKRHTR--RGAGRLSAAD 169
Query: 217 -----PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFFEMPPLTVSEAI 259
P + + SE E D + ++VR K P+++ +A+
Sbjct: 170 VADTVPGAATLNGSGGIVSEAESDGIPTKKIGSLEVKGEGPLVVREKTHVASPMSLDQAL 229
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 230 YEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 264
>gi|313891980|ref|ZP_07825581.1| ribosomal subunit interface protein [Dialister microaerophilus UPII
345-E]
gi|313119623|gb|EFR42814.1| ribosomal subunit interface protein [Dialister microaerophilus UPII
345-E]
Length = 176
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 26/197 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L I+GKNLE+T + ++VE+ GK + + + + + +R + CEV
Sbjct: 1 MELKIRGKNLEVTKALHSYVEKHTGKI---QRYFDKPIKMNVLMRISN-----KTNTCEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T F + GV+ R E ++ +Y SIDLV ++R++ K K + + R F++ K RE
Sbjct: 53 TAFVE--GVILRGVEKSDDMYKSIDLVFDKVERQIHKYKTRLARRYREENVFSK-KFREE 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
E + IV+ K F + P++ EAI Q+ V HDF+ F N ET
Sbjct: 110 KETFGEEEF--------------EIVKTKKFNINPMSPEEAILQMNLVGHDFFMFFNSET 155
Query: 278 GEINIVYKRKAGGYGVI 294
+I +VYKR G YG+I
Sbjct: 156 SDIAVVYKRNDGKYGLI 172
>gi|322517384|ref|ZP_08070258.1| ribosomal subunit interface protein [Streptococcus vestibularis
ATCC 49124]
gi|322123982|gb|EFX95538.1| ribosomal subunit interface protein [Streptococcus vestibularis
ATCC 49124]
Length = 182
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 113/199 (56%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ + +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFNEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAR-----------KHREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ A+ EE ++ EV VR K E+ P+ V EAI Q+E + HDF+ + + +
Sbjct: 105 SRGEVFSAEFNKEEIEEAPTVEV-VRTKNIELKPMDVEEAILQMELLGHDFFIYTDSKDH 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++YKR+ G YG+I K
Sbjct: 164 MTNVLYKREDGNYGLIEAK 182
>gi|392329720|ref|ZP_10274336.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus canis FSL Z3-227]
gi|391419592|gb|EIQ82403.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus canis FSL Z3-227]
Length = 182
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 109/203 (53%), Gaps = 26/203 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARINLKVYR----EKSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KIPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
QV + + + VDE +VR K + P+ V EA Q+E + HDF+ + +
Sbjct: 107 GQVFTTEFEAEQ-------VDETPEVKVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTD 159
Query: 275 EETGEINIVYKRKAGGYGVIIPK 297
E GE NI+Y+R+ G G+I K
Sbjct: 160 AEDGETNILYRREDGNLGLIEAK 182
>gi|282855680|ref|ZP_06264989.1| 30S ribosomal protein S30AE family [Pyramidobacter piscolens W5455]
gi|282586480|gb|EFB91739.1| 30S ribosomal protein S30AE family [Pyramidobacter piscolens W5455]
Length = 176
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 22/134 (16%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDA 226
++R EE + S DL ++R++R+ KE D H+K +R E
Sbjct: 60 IMRGEEKDVDLRKSFDLGLKNLERRIRRHKEYLVDRA-HLKTHDR-----------EFSF 107
Query: 227 DVQSEEEDDNFVDEV----IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
D Q E +DE+ IV+ K F++ P+T EA+ Q++ ++H FY F N E+G++N+
Sbjct: 108 DDQPE------LDELPVGTIVKEKRFDLYPMTPDEAVMQMDLLEHSFYMFLNAESGKVNV 161
Query: 283 VYKRKAGGYGVIIP 296
VYKR+AGGYGV+IP
Sbjct: 162 VYKREAGGYGVLIP 175
>gi|212697030|ref|ZP_03305158.1| hypothetical protein ANHYDRO_01595 [Anaerococcus hydrogenalis DSM
7454]
gi|212675805|gb|EEB35412.1| hypothetical protein ANHYDRO_01595 [Anaerococcus hydrogenalis DSM
7454]
Length = 176
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I+GKN+ + +++K +EK + + K+ + E+D++ S G ++ E
Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDR-LDKYFNKEEEMDLKFSTEGN-------FKKVES 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+F K ++RAEE E ID V + R++RK K K + R +
Sbjct: 53 TIFLKGGTILRAEEVNEDFSTGIDKVIDALVRQIRKQKTKLQRNRRSGESIK-------- 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E+ V E+EDD +I R K + P++ EA Q+E ++HDF+ + +++
Sbjct: 105 ---FESFDKVDEEKEDD----PIIKREKEILLRPMSDEEACMQMELLNHDFFLYLDDQDM 157
Query: 279 EINIVYKRKAGGYGVIIP 296
+ +VYKRK G YG+IIP
Sbjct: 158 KTRLVYKRKDGHYGLIIP 175
>gi|167756742|ref|ZP_02428869.1| hypothetical protein CLORAM_02289 [Clostridium ramosum DSM 1402]
gi|237734461|ref|ZP_04564942.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|365832378|ref|ZP_09373911.1| ribosomal subunit interface protein [Coprobacillus sp. 3_3_56FAA]
gi|374625857|ref|ZP_09698273.1| ribosomal subunit interface protein [Coprobacillus sp. 8_2_54BFAA]
gi|167702917|gb|EDS17496.1| ribosomal subunit interface protein [Clostridium ramosum DSM 1402]
gi|229382281|gb|EEO32372.1| conserved hypothetical protein [Coprobacillus sp. D7]
gi|365260323|gb|EHM90280.1| ribosomal subunit interface protein [Coprobacillus sp. 3_3_56FAA]
gi|373915517|gb|EHQ47288.1| ribosomal subunit interface protein [Coprobacillus sp. 8_2_54BFAA]
Length = 176
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 110/197 (55%), Gaps = 26/197 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+E+T+ ++ + EK+ K + K+ + V+ ++ R +G+ + EV
Sbjct: 1 MKISVRGKNIEITEAIEAKISEKLSK-LDKYFIVSDNVEAKVLCRVYPYGQ-----KLEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREP 217
T+ T+ + ++RAE + +Y ++DLV ++ ++RK K + S + K FN +
Sbjct: 55 TIPTE-YVLLRAEVVDDDLYNAMDLVVDKLEGQIRKYKTRLSRKSKDNKLAFNLSSIE-- 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
DV+SEE+ V+V++K P+ + EAI Q+E + H F+ +R+ E+
Sbjct: 112 ---------DVESEED-------VLVKVKSITPKPMDMEEAIMQMELIGHSFFVYRDVES 155
Query: 278 GEINIVYKRKAGGYGVI 294
I+IVY+R G YG+I
Sbjct: 156 DSISIVYRRNDGDYGLI 172
>gi|430825834|ref|ZP_19444034.1| ribosomal subunit interface protein [Enterococcus faecium E0164]
gi|430445731|gb|ELA55453.1| ribosomal subunit interface protein [Enterococcus faecium E0164]
Length = 183
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMVSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|320095866|ref|ZP_08027498.1| ribosome-associated protein Y [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977203|gb|EFW08914.1| ribosome-associated protein Y [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 221
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 28/218 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----I 153
++ + + +N E+ + +VEEKV K + R +DV L+ + PR
Sbjct: 4 NMDITVVARNAEIHPNFRQYVEEKVSKVTQFYPRAQR-IDVELT-----HERNPRQADTA 57
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRL 212
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + +
Sbjct: 58 ERIELTVYGKG-PIIRAEAKSADRYAAVDIAAGKLYERLRRLRDRAKDHRRGYARDLTDT 116
Query: 213 KVRE-PVTQVVE---------------NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVS 256
+V E PV E D V E+ +IVR K E PP+TV
Sbjct: 117 EVLEAPVPPQQEEAPAEEAAPKPLRSAEDLKVGEAREEQWGDSPIIVRQKVHEAPPMTVD 176
Query: 257 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
EA++Q+ V H F+ F ++ET + +VY R YGV+
Sbjct: 177 EALDQMMMVGHPFFLFVDKETRQPCVVYHRHGWTYGVL 214
>gi|270290717|ref|ZP_06196941.1| sigma-54 modulation protein [Pediococcus acidilactici 7_4]
gi|418068671|ref|ZP_12705953.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus acidilactici MA18/5M]
gi|427443992|ref|ZP_18925870.1| ribosomal subunit interface protein [Pediococcus lolii NGRI 0510Q]
gi|270280777|gb|EFA26611.1| sigma-54 modulation protein [Pediococcus acidilactici 7_4]
gi|357539407|gb|EHJ23426.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Pediococcus acidilactici MA18/5M]
gi|425786470|dbj|GAC46658.1| ribosomal subunit interface protein [Pediococcus lolii NGRI 0510Q]
Length = 184
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 107/193 (55%), Gaps = 20/193 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+N+E+T++++++VE+++GK + V L V R + EVT+
Sbjct: 6 VRGENIEVTESIRDYVEKRIGKIEKYFDQGANPKAHVNLKVYQD------RTAKVEVTI- 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+ V+RAEE + +YAS+DLV+ ++R++RK K K + R G+ +++ Q
Sbjct: 59 PLPYLVLRAEETSPDLYASVDLVTDKLERQIRKYKTKINRKSRET-GYKGVEI----PQE 113
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ + ++ E D IVR K + P+ EAI Q++ + H+F+ + + +TG ++
Sbjct: 114 DAREDEEEASEFD-------IVRTKQVSLKPMGAEEAILQMDMLGHNFFIYEDADTGSVD 166
Query: 282 IVYKRKAGGYGVI 294
IVY+R G YG+I
Sbjct: 167 IVYRRHDGRYGLI 179
>gi|308811250|ref|XP_003082933.1| chloroplast-specific ribosomal protein (ISS) [Ostreococcus tauri]
gi|116054811|emb|CAL56888.1| chloroplast-specific ribosomal protein (ISS) [Ostreococcus tauri]
Length = 184
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL----VREVDVRLSVRGGEFGKGPR 152
+ VK+++QG +LE+T + +V K+G+A SH+ +REVDVR S RGGE KG
Sbjct: 48 TDVKMLVQGLHLEITPAIDEYVRSKIGRAC---SHVDSRDIREVDVRCSARGGEGSKGGV 104
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RH 205
+ EVT+ + + A+ E +YA+ID + I+ R +RK KEK G RH
Sbjct: 105 EHKTEVTVLMTRGPTLHADGVGENLYATIDQCADIVTRSIRKHKEKHGGKGARH 158
>gi|431764484|ref|ZP_19553023.1| ribosomal subunit interface protein [Enterococcus faecium E4215]
gi|430630871|gb|ELB67211.1| ribosomal subunit interface protein [Enterococcus faecium E4215]
Length = 183
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKAEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|347549814|ref|YP_004856142.1| hypothetical protein LIV_2421 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982885|emb|CBW86919.1| Conserved hypothetical protein like to B. subtilis YvyD protein
[Listeria ivanovii subsp. ivanovii PAM 55]
Length = 187
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPIRDYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER------- 107
Query: 219 TQVVENDADVQSEEEDD--NFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+D + + ED+ +F D IVR K F + P+ EA+ Q+ + H FY + + E
Sbjct: 108 DYFAYSDVNGSAPPEDNEGDF-DLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAE 166
Query: 277 TGEINIVYKRKAGGYGVI 294
T NIVY RK G YG+I
Sbjct: 167 TNGTNIVYSRKDGKYGLI 184
>gi|148378176|ref|YP_001252717.1| ribosomal subunit interface protein [Clostridium botulinum A str.
ATCC 3502]
gi|153933462|ref|YP_001382576.1| ribosomal subunit interface protein [Clostridium botulinum A str.
ATCC 19397]
gi|153936354|ref|YP_001386129.1| ribosomal subunit interface protein [Clostridium botulinum A str.
Hall]
gi|153938529|ref|YP_001389535.1| ribosomal subunit interface protein [Clostridium botulinum F str.
Langeland]
gi|168182219|ref|ZP_02616883.1| ribosomal subunit interface protein [Clostridium botulinum Bf]
gi|170755531|ref|YP_001779799.1| ribosomal subunit interface protein [Clostridium botulinum B1 str.
Okra]
gi|170761554|ref|YP_001785500.1| ribosomal subunit interface protein [Clostridium botulinum A3 str.
Loch Maree]
gi|237793490|ref|YP_002861042.1| ribosomal subunit interface protein [Clostridium botulinum Ba4 str.
657]
gi|384460616|ref|YP_005673211.1| ribosomal subunit interface protein [Clostridium botulinum F str.
230613]
gi|387816399|ref|YP_005676743.1| ribosomal subunit interface protein [Clostridium botulinum H04402
065]
gi|429243943|ref|ZP_19207425.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001628]
gi|148287660|emb|CAL81725.1| putative sigma 54 modulation protein/S30EA ribosomal protein
[Clostridium botulinum A str. ATCC 3502]
gi|152929506|gb|ABS35006.1| ribosomal subunit interface protein [Clostridium botulinum A str.
ATCC 19397]
gi|152932268|gb|ABS37767.1| ribosomal subunit interface protein [Clostridium botulinum A str.
Hall]
gi|152934425|gb|ABS39923.1| ribosomal subunit interface protein [Clostridium botulinum F str.
Langeland]
gi|169120743|gb|ACA44579.1| ribosomal subunit interface protein [Clostridium botulinum B1 str.
Okra]
gi|169408543|gb|ACA56954.1| ribosomal subunit interface protein [Clostridium botulinum A3 str.
Loch Maree]
gi|182674506|gb|EDT86467.1| ribosomal subunit interface protein [Clostridium botulinum Bf]
gi|229262083|gb|ACQ53116.1| ribosomal subunit interface protein [Clostridium botulinum Ba4 str.
657]
gi|295317633|gb|ADF98010.1| ribosomal subunit interface protein [Clostridium botulinum F str.
230613]
gi|322804440|emb|CBZ01990.1| ribosomal subunit interface protein [Clostridium botulinum H04402
065]
gi|428758863|gb|EKX81254.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001628]
Length = 175
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+E+T+ ++ VE+K+ K + V LSV + + EV
Sbjct: 1 MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVV-ATATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ HGV+ R EE E +YASID+V ++ ++RK K K H ++ F +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLEGQVRKQKTKLQRKIHDGSLR-FQYI--- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
D +SEE + IV+ K F M P++ EA+ Q+E + H+F+ ++N
Sbjct: 107 ----------PDYESEENKET----QIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNA 152
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+T E+N++Y+RK G YG+I P+
Sbjct: 153 DTEEVNVIYRRKDGNYGLIEPE 174
>gi|429732014|ref|ZP_19266634.1| ribosomal subunit interface protein [Corynebacterium durum F0235]
gi|429144249|gb|EKX87368.1| ribosomal subunit interface protein [Corynebacterium durum F0235]
Length = 221
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC--- 156
++ I G+N+E+ D V K+ K + +D L+ E P RR
Sbjct: 16 QVTITGRNVEVPDHFAERVHAKLAK--------IARLDPTLTFFHVELQHEPNPRRADES 67
Query: 157 ---EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE----SDHGRHMKGF 209
++T K H + RAE ++ YA+++ + ++R LRK+K + S H R KG
Sbjct: 68 DKIQITATGKGH-IARAEAKEDSFYAALETALARMERSLRKVKARRRISRSGH-RAPKGV 125
Query: 210 NRL------KVREPVTQVVENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIE 260
+ V Q E DV E D+ D V +VR K P++V +A+
Sbjct: 126 GEVAADLVADATAAVAQQPEGKFDVDPYE--DSVTDVVPGQVVRTKEHSSTPMSVDDALS 183
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F NEETG ++VY+R A YG+I
Sbjct: 184 EMELVGHDFYLFVNEETGRPSVVYRRHAFDYGLI 217
>gi|374601532|ref|ZP_09674532.1| ribosome-associated factor y [Paenibacillus dendritiformis C454]
gi|374392867|gb|EHQ64189.1| ribosome-associated factor y [Paenibacillus dendritiformis C454]
Length = 180
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 109/196 (55%), Gaps = 27/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVR-EVDVRLSVRGGEFGKGPRIRRCEVTLF 161
++G+++E+TD + ++VE+K+G+ + +V+V LSV + EVT+
Sbjct: 5 VRGQHIEVTDALLDYVEKKLGRLERYFEAPPKSDVNVTLSVIRDQHT-------VEVTI- 56
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
++RAE+ ++ +YASID V+ ++R++RK K K NR K R+ T+
Sbjct: 57 PLPGLLLRAEDRSKDMYASIDSVTDKLERQIRKHKTK----------VNR-KFRQTGTEA 105
Query: 222 -VENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +DA V +EED V VR K F + P+ V EAI Q+ + H F+ F N ET
Sbjct: 106 HLFSDAATPVPVDEEDQLEV----VRTKRFTLKPMDVEEAILQMNMIGHSFFVFSNAETK 161
Query: 279 EINIVYKRKAGGYGVI 294
E+N+VY+R G YG+I
Sbjct: 162 EVNVVYRRNDGRYGLI 177
>gi|220913184|ref|YP_002488493.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Arthrobacter chlorophenolicus A6]
gi|219860062|gb|ACL40404.1| sigma 54 modulation protein/ribosomal protein S30EA [Arthrobacter
chlorophenolicus A6]
Length = 241
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +I G+NL ++D + + EK+ K + V+ VD ++S G ++ EV
Sbjct: 1 MEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR------ 211
T+ + V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 TVLGRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATASL 117
Query: 212 --LKVREPVTQVVENDADVQSEEED------DNFV----DEVIVRMKFFEMPPLTVSEAI 259
EP+ + ++ + D DN + V++R K F LT+ +A+
Sbjct: 118 EPASAHEPLYMEASHRSEASASSADRSPYDVDNDIPAGDSPVLIRRKVFPAASLTLDDAV 177
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ +E V HDFY F ++ T ++VY+R+ YGVI
Sbjct: 178 DNMELVGHDFYLFVDKATNTPSVVYRRRGWTYGVI 212
>gi|399527913|ref|ZP_10767592.1| ribosomal subunit interface protein [Actinomyces sp. ICM39]
gi|398361572|gb|EJN45322.1| ribosomal subunit interface protein [Actinomyces sp. ICM39]
Length = 214
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 26/215 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAE 113
Query: 214 VRE-PVTQVVE-------------NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAI 259
+ E PV + V D V E+ +IVR K E PP++V EA+
Sbjct: 114 ILEAPVVEEVAAPEPEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDEAL 173
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+Q+ V H F+ F +++T + +VY R YGV+
Sbjct: 174 DQMMMVGHPFFLFVDKDTNQPCVVYHRHGWTYGVL 208
>gi|366053904|ref|ZP_09451626.1| ribosomal subunit interface protein [Lactobacillus suebicus KCTC
3549]
Length = 184
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 107/198 (54%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+TD+++ +V +++ K + V + L V + K E
Sbjct: 2 LKFNIRGENIEVTDSIREYVTKRISKLEKYFENSVEATAHINLKVYSNKDAK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + +RAEE + +Y+S DLV+ ++R++RK K K + R KG+ L
Sbjct: 56 VTI-PLPYLTLRAEETSSDMYSSADLVTDKLERQIRKYKTKINRKSRE-KGYKNL----- 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ ND +SEE + + +E+ IVR K + P+ EAI Q++ + HDF+ F + E
Sbjct: 109 --EFTPND---RSEETNKD--EELKIVRTKQVSLKPMDNEEAILQMDMLGHDFFVFEDAE 161
Query: 277 TGEINIVYKRKAGGYGVI 294
T +IVY+R G YG+I
Sbjct: 162 TNGTSIVYRRNDGRYGLI 179
>gi|227876266|ref|ZP_03994382.1| ribosome-associated inhibitor protein Y [Mobiluncus mulieris ATCC
35243]
gi|269977981|ref|ZP_06184934.1| ribosome-associated protein Y [Mobiluncus mulieris 28-1]
gi|306819541|ref|ZP_07453248.1| ribosomal subunit interface protein [Mobiluncus mulieris ATCC
35239]
gi|307701250|ref|ZP_07638272.1| ribosomal subunit interface protein [Mobiluncus mulieris FB024-16]
gi|227843227|gb|EEJ53420.1| ribosome-associated inhibitor protein Y [Mobiluncus mulieris ATCC
35243]
gi|269933828|gb|EEZ90409.1| ribosome-associated protein Y [Mobiluncus mulieris 28-1]
gi|304647833|gb|EFM45151.1| ribosomal subunit interface protein [Mobiluncus mulieris ATCC
35239]
gi|307613644|gb|EFN92891.1| ribosomal subunit interface protein [Mobiluncus mulieris FB024-16]
Length = 209
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 20/207 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + +VEEK+ K V + + + VDV L+ + PR
Sbjct: 1 MEITLKARNAEIHPNFREYVEEKIAK-VEQLAPRTQRVDVELT-----HERNPRQVDTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ +H R+ + L
Sbjct: 55 RIEITVHGKG-PVVRAEASSSDRYAAVDIAAGKLYERLRRARDRIKNHRRYDIPPDVDLD 113
Query: 214 VREPVTQVVENDADVQS-----EEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDH 267
V P Q A V++ E +D D VIVR K E P++V EA++++E V H
Sbjct: 114 VAMPEPQA--KPAPVRAPLKPGEVREDQLGDSPVIVREKLHETTPVSVEEALDEMELVGH 171
Query: 268 DFYGFRNEETGEINIVYKRKAGGYGVI 294
FY F + ET + +VY R+ YGVI
Sbjct: 172 PFYLFIDSETMQPAVVYHRQGWTYGVI 198
>gi|116671254|ref|YP_832187.1| 30S ribosomal protein S30P / sigma 54 modulation protein
[Arthrobacter sp. FB24]
gi|116611363|gb|ABK04087.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Arthrobacter sp. FB24]
Length = 241
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 22/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +I G+NL ++D + + +EK+ K + V+ VD ++S + + + + E+
Sbjct: 1 MEFMISGRNLTVSDRFREYADEKISK-IASLGDKVQRVDAKVS-KETKARQTAELLTVEL 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHM--------KGF 209
T+ + V+RAE A +A+ DL + + +LR+ K+ K+ HGRH
Sbjct: 59 TVLGRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKSVTEATASL 117
Query: 210 NRLKVREPVTQVVENDADVQ------SEEEDDNFV----DEVIVRMKFFEMPPLTVSEAI 259
EP+ N + Q S + DN + V++R K F LT+ +A+
Sbjct: 118 EPASTTEPLYVEASNHQEPQAAPVEKSPYDVDNDIPAGDSPVLIRRKVFPAASLTLDDAV 177
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ +E V HDFY F ++ET ++VY+R YGVI
Sbjct: 178 DNMELVGHDFYLFVDKETKAPSVVYRRDGWTYGVI 212
>gi|379012636|ref|YP_005270448.1| ribosomal subunit interface protein Cls [Acetobacterium woodii DSM
1030]
gi|375303425|gb|AFA49559.1| ribosomal subunit interface protein Cls [Acetobacterium woodii DSM
1030]
Length = 177
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 23/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GKN+ +++ +K +++K+GK + +E +V + F K + EV
Sbjct: 1 MRFTIYGKNMHVSEGLKETLKKKLGKF---ERYFSQETEVYAT-----FSKEKNYQMLEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAEE +E + SI+ V + ++ +LRK K K R+ N+
Sbjct: 53 TIPVGK-TILRAEERSEDMVTSIENVINKLEGQLRKHKTKLQK--RNQDEANKF------ 103
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
N ++S E D F +V VR K F + P+ V EA Q+E + H+F+ F N +T
Sbjct: 104 -----NLEGIESSAEADGFQPKV-VRTKKFAVKPMNVDEATLQMELLGHNFFVFLNGDTD 157
Query: 279 EINIVYKRKAGGYGVIIP 296
++N+VY RK G YG+I P
Sbjct: 158 DVNVVYMRKDGNYGLIEP 175
>gi|312862987|ref|ZP_07723226.1| ribosomal subunit interface protein [Streptococcus vestibularis
F0396]
gi|311101482|gb|EFQ59686.1| ribosomal subunit interface protein [Streptococcus vestibularis
F0396]
Length = 182
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 113/199 (56%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ + +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFNEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K + K RE V
Sbjct: 57 TIPTGS-VTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAR-----------KHREKV 104
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ A+ EE ++ EV VR K E+ P+ V EAI Q+E + HDF+ + + +
Sbjct: 105 SRGEVFSAEFTKEEIEEAPTVEV-VRTKNIELKPMDVEEAILQMELLGHDFFIYTDSKDH 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++YKR+ G YG+I K
Sbjct: 164 MTNVLYKREDGNYGLIEAK 182
>gi|104773714|ref|YP_618694.1| ribosomal protein S30EA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|12642652|gb|AAK00333.1|AF320250_6 YvyD [Lactobacillus delbrueckii]
gi|103422795|emb|CAI97436.1| Ribosomal protein S30EA [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
Length = 185
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 110/200 (55%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRDYVEKRLTK-LEKYFDLSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG + E
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGVEEFFIPE 112
Query: 217 PVTQVVENDADVQSE--EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
DA V+ E E+ F IVR K + P+ EAI Q++ ++HDF+ F++
Sbjct: 113 --------DAPVEEEKVEKAPMFK---IVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQD 161
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET ++VY+R G YG+I
Sbjct: 162 AETNGTSVVYRRNDGSYGLI 181
>gi|293189440|ref|ZP_06608160.1| S30AE family protein [Actinomyces odontolyticus F0309]
gi|292821530|gb|EFF80469.1| S30AE family protein [Actinomyces odontolyticus F0309]
Length = 214
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 30/217 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAE 113
Query: 214 VREPVTQVVENDADVQSEE------EDDNFVDE----------VIVRMKFFEMPPLTVSE 257
+ E VVE A ++E +D V E +IVR K E PP++V E
Sbjct: 114 ILE--APVVEETATFETEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDE 171
Query: 258 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
A++Q+ V H F+ F +++T + +VY R YGV+
Sbjct: 172 ALDQMMMVGHPFFLFVDKDTNQPCVVYHRHGWTYGVL 208
>gi|293556400|ref|ZP_06674981.1| ribosomal subunit interface protein [Enterococcus faecium E1039]
gi|291601467|gb|EFF31738.1| ribosomal subunit interface protein [Enterococcus faecium E1039]
Length = 183
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDSPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|354807384|ref|ZP_09040853.1| 30S ribosomal interface protein S30EA [Lactobacillus curvatus CRL
705]
gi|354514106|gb|EHE86084.1| 30S ribosomal interface protein S30EA [Lactobacillus curvatus CRL
705]
Length = 181
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 34/199 (17%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++G+N+E+TD ++++VE+K+ K + +H V L V + K
Sbjct: 6 VRGENIEVTDAIRSYVEKKISKLEKYFDDSATATAH------VNLKVYSDKTAK------ 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAEE + +Y S+DLV+ ++R++RK K K + R +G +++
Sbjct: 54 VEVTI-PLPYLVLRAEETSPDMYGSVDLVTDKLERQIRKFKTKINRKSRE-RGIKGMELT 111
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
P +A+ EE +VR K + P+ EAI Q+ + H+F+ F +
Sbjct: 112 VP-------EAEALPEESMQ------VVRTKRVSLKPMDSEEAILQMNMLGHEFFIFEDS 158
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET +IVYKR+ G YG+I
Sbjct: 159 ETNGTSIVYKRQDGRYGLI 177
>gi|352685086|ref|YP_004897071.1| sigma-54 modulation protein [Acidaminococcus intestini RyC-MR95]
gi|350279741|gb|AEQ22931.1| sigma-54 modulation protein [Acidaminococcus intestini RyC-MR95]
Length = 165
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 12/131 (9%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDA 226
V+RA+E +E +YASID I+R++ K K + R F V PV+
Sbjct: 45 VLRAQEGSENMYASIDNCVEKIERQIHKYKTRLMK--RKYNNFRDAAV-PPVS------G 95
Query: 227 DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 286
DV+ D F + R K + M P+ V EAI Q+ ++HDF+ F N+ET + +VY+R
Sbjct: 96 DVEEASADGEFK---VARTKTYAMRPMNVQEAIMQMNMLNHDFFVFFNDETESMAVVYRR 152
Query: 287 KAGGYGVIIPK 297
KAG YG+I P+
Sbjct: 153 KAGDYGLINPE 163
>gi|257890394|ref|ZP_05670047.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,410]
gi|257893002|ref|ZP_05672655.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,408]
gi|260559611|ref|ZP_05831791.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium C68]
gi|293560374|ref|ZP_06676867.1| ribosomal subunit interface protein [Enterococcus faecium E1162]
gi|314939595|ref|ZP_07846822.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a04]
gi|314941221|ref|ZP_07848117.1| ribosomal subunit interface protein [Enterococcus faecium TX0133C]
gi|314949846|ref|ZP_07853156.1| ribosomal subunit interface protein [Enterococcus faecium TX0082]
gi|314953360|ref|ZP_07856287.1| ribosomal subunit interface protein [Enterococcus faecium TX0133A]
gi|314993439|ref|ZP_07858804.1| ribosomal subunit interface protein [Enterococcus faecium TX0133B]
gi|314995788|ref|ZP_07860877.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a01]
gi|383329359|ref|YP_005355243.1| ribosomal subunit interface protein [Enterococcus faecium Aus0004]
gi|424793824|ref|ZP_18219882.1| ribosomal subunit interface protein [Enterococcus faecium V689]
gi|424849351|ref|ZP_18273808.1| ribosomal subunit interface protein [Enterococcus faecium R501]
gi|424866977|ref|ZP_18290795.1| ribosomal subunit interface protein [Enterococcus faecium R497]
gi|424953949|ref|ZP_18368876.1| ribosomal subunit interface protein [Enterococcus faecium R494]
gi|424971320|ref|ZP_18384763.1| ribosomal subunit interface protein [Enterococcus faecium P1139]
gi|424978548|ref|ZP_18391461.1| ribosomal subunit interface protein [Enterococcus faecium P1123]
gi|424985593|ref|ZP_18398056.1| ribosomal subunit interface protein [Enterococcus faecium ERV69]
gi|424989412|ref|ZP_18401679.1| ribosomal subunit interface protein [Enterococcus faecium ERV38]
gi|424990524|ref|ZP_18402732.1| ribosomal subunit interface protein [Enterococcus faecium ERV26]
gi|425035285|ref|ZP_18440128.1| ribosomal subunit interface protein [Enterococcus faecium 514]
gi|425038119|ref|ZP_18442748.1| ribosomal subunit interface protein [Enterococcus faecium 513]
gi|425041548|ref|ZP_18445941.1| ribosomal subunit interface protein [Enterococcus faecium 511]
gi|425048912|ref|ZP_18452792.1| ribosomal subunit interface protein [Enterococcus faecium 509]
gi|425059821|ref|ZP_18463139.1| ribosomal subunit interface protein [Enterococcus faecium 503]
gi|257826754|gb|EEV53380.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,410]
gi|257829381|gb|EEV55988.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,408]
gi|260074279|gb|EEW62601.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium C68]
gi|291605662|gb|EFF35103.1| ribosomal subunit interface protein [Enterococcus faecium E1162]
gi|313590060|gb|EFR68905.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a01]
gi|313592104|gb|EFR70949.1| ribosomal subunit interface protein [Enterococcus faecium TX0133B]
gi|313594636|gb|EFR73481.1| ribosomal subunit interface protein [Enterococcus faecium TX0133A]
gi|313599945|gb|EFR78788.1| ribosomal subunit interface protein [Enterococcus faecium TX0133C]
gi|313641135|gb|EFS05715.1| ribosomal subunit interface protein [Enterococcus faecium
TX0133a04]
gi|313643919|gb|EFS08499.1| ribosomal subunit interface protein [Enterococcus faecium TX0082]
gi|378939053|gb|AFC64125.1| ribosomal subunit interface protein [Enterococcus faecium Aus0004]
gi|402915940|gb|EJX36861.1| ribosomal subunit interface protein [Enterococcus faecium V689]
gi|402917218|gb|EJX38026.1| ribosomal subunit interface protein [Enterococcus faecium R501]
gi|402937869|gb|EJX56928.1| ribosomal subunit interface protein [Enterococcus faecium R494]
gi|402938280|gb|EJX57297.1| ribosomal subunit interface protein [Enterococcus faecium R497]
gi|402959554|gb|EJX76808.1| ribosomal subunit interface protein [Enterococcus faecium P1139]
gi|402961406|gb|EJX78442.1| ribosomal subunit interface protein [Enterococcus faecium P1123]
gi|402965406|gb|EJX82124.1| ribosomal subunit interface protein [Enterococcus faecium ERV69]
gi|402968828|gb|EJX85285.1| ribosomal subunit interface protein [Enterococcus faecium ERV38]
gi|402979297|gb|EJX94972.1| ribosomal subunit interface protein [Enterococcus faecium ERV26]
gi|403018357|gb|EJY31045.1| ribosomal subunit interface protein [Enterococcus faecium 514]
gi|403020154|gb|EJY32712.1| ribosomal subunit interface protein [Enterococcus faecium 513]
gi|403025836|gb|EJY37881.1| ribosomal subunit interface protein [Enterococcus faecium 511]
gi|403029452|gb|EJY41204.1| ribosomal subunit interface protein [Enterococcus faecium 509]
gi|403043207|gb|EJY54129.1| ribosomal subunit interface protein [Enterococcus faecium 503]
Length = 183
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DATALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|51891261|ref|YP_073952.1| 30S ribosomal protein S30AE [Symbiobacterium thermophilum IAM
14863]
gi|51854950|dbj|BAD39108.1| 30S ribosomal protein S30AE family [Symbiobacterium thermophilum
IAM 14863]
Length = 178
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 107/201 (53%), Gaps = 26/201 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+E+T ++ +VE+K+GK H ++ L V G R +
Sbjct: 1 MQVAVRGKNIEITKALREYVEKKLGKIEKFVDHPIK-AQANLYVERG---------RHII 50
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+ +G ++R EE +YASIDLV+ +++++++ + + P
Sbjct: 51 EVTADLNGWILRGEEATGDMYASIDLVADKLEKQVQRYRARLR--------RRGGAGASP 102
Query: 218 VTQVV-ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V D V +E +D +V++K F + P+TV EAI Q++ + HDF+ F N +
Sbjct: 103 EAAVAGAEDQGVDAE------LDGKVVKVKRFPVKPVTVDEAILQMDLLSHDFFVFVNSD 156
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
TG++N++Y+R G YG+++P+
Sbjct: 157 TGKVNVLYRRHDGDYGLLVPE 177
>gi|404493575|ref|YP_006717681.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Pelobacter carbinolicus DSM 2380]
gi|77545616|gb|ABA89178.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Pelobacter carbinolicus DSM 2380]
Length = 182
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 110/201 (54%), Gaps = 23/201 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC-E 157
+++ + +++E+++ ++ +VEEK+ + V K+ + LSV +IR C E
Sbjct: 1 MQIAVTFRHMEVSEALRAYVEEKISR-VKKYIEEPIDAQAVLSVEK-------KIRHCAE 52
Query: 158 VTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
VTL K G+ ++ ++ +YA+ID + I+R+L++ KEK H V E
Sbjct: 53 VTLVAK--GITIKGSDETNDMYAAIDGMVDKIERQLKRYKEKIKRHK---------PVSE 101
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
V QV ++ D+ + V++R + F + PL+V EA+ Q++ ++ F F +
Sbjct: 102 RVRQV--EKTVFAADSIDEGSPEPVVIRSQSFSVKPLSVEEAVMQMDLLNKTFLVFSDAS 159
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T EI++VY+RK G YG+I+P+
Sbjct: 160 TNEISVVYRRKDGNYGLIVPE 180
>gi|227505516|ref|ZP_03935565.1| ribosome-associated inhibitor protein Y [Corynebacterium striatum
ATCC 6940]
gi|227197880|gb|EEI77928.1| ribosome-associated inhibitor protein Y [Corynebacterium striatum
ATCC 6940]
Length = 215
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 30/215 (13%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR- 155
++ ++ I G+N+E+ D + V EK+ K + +D L+ E P RR
Sbjct: 5 TNAQVTITGRNVEVPDHFQERVTEKLAK--------IERLDPTLTFFHVELQHEPNPRRE 56
Query: 156 -----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK----ESDHGRHM 206
++T K H + RAE ++ YA+++ + ++R LRK+K + +S H R
Sbjct: 57 AESDRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKVRRENVKSGH-RAQ 114
Query: 207 KGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAI 259
KG L + EN+ + E D + + V IVR K P++V EA+
Sbjct: 115 KGTGELAAE--MVAAAENER-AKEERYIDPYAETVEDVRPGQIVRSKEHPATPMSVDEAL 171
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F NEE + ++VY+R A YG+I
Sbjct: 172 SEMELVGHDFYLFINEENNKPSVVYRRHAFDYGII 206
>gi|386585592|ref|YP_006081994.1| ribosome-associated protein [Streptococcus suis D12]
gi|353737738|gb|AER18746.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis D12]
Length = 180
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTDALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
QV ++ Q+ EE +VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEVK------VVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAN 158
Query: 277 TGEINIVYKRKAGGYGVI 294
G N++Y+R+ G G++
Sbjct: 159 DGTTNVLYRREDGDLGLL 176
>gi|347525095|ref|YP_004831843.1| ribosome-associated factor Y [Lactobacillus ruminis ATCC 27782]
gi|345284054|gb|AEN77907.1| Ribosome-associated factor Y [Lactobacillus ruminis ATCC 27782]
Length = 186
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 11/130 (8%)
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
+ V+RAEE + +YASIDLV+ ++R++RK K K + R KGF + V
Sbjct: 62 YLVLRAEETSPDMYASIDLVTDKLERQIRKYKTKLNRKSRE-KGFKTF-------EFVPT 113
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
++ ED F IVR K + P+ EAI Q++ + HDF+ + + ET I+IVY
Sbjct: 114 SDPKEAAAEDKKFE---IVRTKSVSLKPMDAEEAILQMDMLGHDFFIYEDAETSGIDIVY 170
Query: 285 KRKAGGYGVI 294
+R+ G YG+I
Sbjct: 171 RRRDGRYGLI 180
>gi|406935804|gb|EKD69677.1| hypothetical protein ACD_47C00038G0001, partial [uncultured
bacterium]
Length = 174
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 14/181 (7%)
Query: 117 HVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAET 176
+V EK K H++ E+DV LSV + K R + EVT++ V+RA E +
Sbjct: 5 YVREKFSKLTNYFEHII-EIDVTLSVEQTK-NKEDR-QTVEVTIWANG-AVLRACESSFD 60
Query: 177 VYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK-VREPVTQVVENDADVQSEEEDD 235
+YAS+DLV I+R++ K KEK D R R + V + E +D +
Sbjct: 61 MYASVDLVLDKIERQIIKYKEKLKDIPRRTAHHKREREATHTVLSLSEKTSDASEPK--- 117
Query: 236 NFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVII 295
I+R K F + P+ EA QL+ + DF F N +T E+N+VY+R G G+I
Sbjct: 118 ------IIRTKKFALKPMFADEAAMQLDLLGQDFVVFSNAQTSEVNVVYRRNDGNIGLIE 171
Query: 296 P 296
P
Sbjct: 172 P 172
>gi|312867853|ref|ZP_07728058.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0405]
gi|311096608|gb|EFQ54847.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0405]
Length = 180
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 106/196 (54%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRVKSGAGKL----FT 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
VVE A + +VR K ++ P+ + EAI Q++ + HDF+ +R+ E
Sbjct: 112 DAVVEEAATTEK-----------VVRSKTIDLEPMDLDEAILQMDLLAHDFFIYRDAEDN 160
Query: 279 EINIVYKRKAGGYGVI 294
+ N++Y+R+ G G++
Sbjct: 161 KTNVIYRREDGDIGLL 176
>gi|257882723|ref|ZP_05662376.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,502]
gi|261208676|ref|ZP_05923113.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium TC 6]
gi|289566066|ref|ZP_06446503.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293568707|ref|ZP_06680022.1| ribosomal subunit interface protein [Enterococcus faecium E1071]
gi|294616266|ref|ZP_06696059.1| ribosomal subunit interface protein [Enterococcus faecium E1636]
gi|294617598|ref|ZP_06697228.1| ribosomal subunit interface protein [Enterococcus faecium E1679]
gi|294622338|ref|ZP_06701371.1| ribosomal subunit interface protein [Enterococcus faecium U0317]
gi|406590695|ref|ZP_11065053.1| ribosomal subunit interface protein [Enterococcus sp. GMD1E]
gi|410936779|ref|ZP_11368642.1| ribosome-associated inhibitor protein Y [Enterococcus sp. GMD5E]
gi|415889752|ref|ZP_11549369.1| ribosomal subunit interface protein [Enterococcus faecium E4453]
gi|416140992|ref|ZP_11599328.1| ribosomal subunit interface protein [Enterococcus faecium E4452]
gi|424795783|ref|ZP_18221595.1| ribosomal subunit interface protein [Enterococcus faecium S447]
gi|424856157|ref|ZP_18280416.1| ribosomal subunit interface protein [Enterococcus faecium R499]
gi|424950544|ref|ZP_18365705.1| ribosomal subunit interface protein [Enterococcus faecium R496]
gi|424956317|ref|ZP_18371104.1| ribosomal subunit interface protein [Enterococcus faecium R446]
gi|424961533|ref|ZP_18375971.1| ribosomal subunit interface protein [Enterococcus faecium P1986]
gi|424966709|ref|ZP_18380469.1| ribosomal subunit interface protein [Enterococcus faecium P1140]
gi|424995715|ref|ZP_18407579.1| ribosomal subunit interface protein [Enterococcus faecium ERV168]
gi|424997606|ref|ZP_18409353.1| ribosomal subunit interface protein [Enterococcus faecium ERV165]
gi|425000206|ref|ZP_18411782.1| ribosomal subunit interface protein [Enterococcus faecium ERV161]
gi|425005548|ref|ZP_18416786.1| ribosomal subunit interface protein [Enterococcus faecium ERV102]
gi|425007086|ref|ZP_18418237.1| ribosomal subunit interface protein [Enterococcus faecium ERV1]
gi|425010476|ref|ZP_18421425.1| ribosomal subunit interface protein [Enterococcus faecium E422]
gi|425015982|ref|ZP_18426569.1| ribosomal subunit interface protein [Enterococcus faecium E417]
gi|425016232|ref|ZP_18426805.1| ribosomal subunit interface protein [Enterococcus faecium C621]
gi|425032039|ref|ZP_18437128.1| ribosomal subunit interface protein [Enterococcus faecium 515]
gi|425059090|ref|ZP_18462442.1| ribosomal subunit interface protein [Enterococcus faecium 504]
gi|430819565|ref|ZP_19438216.1| ribosomal subunit interface protein [Enterococcus faecium E0045]
gi|430827931|ref|ZP_19446061.1| ribosomal subunit interface protein [Enterococcus faecium E0269]
gi|430834251|ref|ZP_19452258.1| ribosomal subunit interface protein [Enterococcus faecium E0679]
gi|430835487|ref|ZP_19453477.1| ribosomal subunit interface protein [Enterococcus faecium E0680]
gi|430838446|ref|ZP_19456392.1| ribosomal subunit interface protein [Enterococcus faecium E0688]
gi|430843698|ref|ZP_19461597.1| ribosomal subunit interface protein [Enterococcus faecium E1050]
gi|430847825|ref|ZP_19465659.1| ribosomal subunit interface protein [Enterococcus faecium E1133]
gi|430849264|ref|ZP_19467045.1| ribosomal subunit interface protein [Enterococcus faecium E1185]
gi|430852011|ref|ZP_19469746.1| ribosomal subunit interface protein [Enterococcus faecium E1258]
gi|430857799|ref|ZP_19475432.1| ribosomal subunit interface protein [Enterococcus faecium E1552]
gi|430860553|ref|ZP_19478152.1| ribosomal subunit interface protein [Enterococcus faecium E1573]
gi|430882351|ref|ZP_19484044.1| ribosomal subunit interface protein [Enterococcus faecium E1575]
gi|430946961|ref|ZP_19485741.1| ribosomal subunit interface protein [Enterococcus faecium E1576]
gi|431003680|ref|ZP_19488778.1| ribosomal subunit interface protein [Enterococcus faecium E1578]
gi|431149495|ref|ZP_19499353.1| ribosomal subunit interface protein [Enterococcus faecium E1620]
gi|431230170|ref|ZP_19502373.1| ribosomal subunit interface protein [Enterococcus faecium E1622]
gi|431251994|ref|ZP_19504052.1| ribosomal subunit interface protein [Enterococcus faecium E1623]
gi|431301390|ref|ZP_19507709.1| ribosomal subunit interface protein [Enterococcus faecium E1626]
gi|431374532|ref|ZP_19510220.1| ribosomal subunit interface protein [Enterococcus faecium E1627]
gi|431514004|ref|ZP_19516052.1| ribosomal subunit interface protein [Enterococcus faecium E1634]
gi|431746564|ref|ZP_19535389.1| ribosomal subunit interface protein [Enterococcus faecium E2134]
gi|431748971|ref|ZP_19537723.1| ribosomal subunit interface protein [Enterococcus faecium E2297]
gi|431767563|ref|ZP_19556010.1| ribosomal subunit interface protein [Enterococcus faecium E1321]
gi|431771169|ref|ZP_19559555.1| ribosomal subunit interface protein [Enterococcus faecium E1644]
gi|431772610|ref|ZP_19560948.1| ribosomal subunit interface protein [Enterococcus faecium E2369]
gi|431775408|ref|ZP_19563681.1| ribosomal subunit interface protein [Enterococcus faecium E2560]
gi|431780139|ref|ZP_19568324.1| ribosomal subunit interface protein [Enterococcus faecium E4389]
gi|431781565|ref|ZP_19569710.1| ribosomal subunit interface protein [Enterococcus faecium E6012]
gi|431786059|ref|ZP_19574076.1| ribosomal subunit interface protein [Enterococcus faecium E6045]
gi|257818381|gb|EEV45709.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,502]
gi|260077178|gb|EEW64898.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium TC 6]
gi|289162173|gb|EFD10036.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291588667|gb|EFF20500.1| ribosomal subunit interface protein [Enterococcus faecium E1071]
gi|291590780|gb|EFF22496.1| ribosomal subunit interface protein [Enterococcus faecium E1636]
gi|291596204|gb|EFF27467.1| ribosomal subunit interface protein [Enterococcus faecium E1679]
gi|291598165|gb|EFF29264.1| ribosomal subunit interface protein [Enterococcus faecium U0317]
gi|364090321|gb|EHM32924.1| ribosomal subunit interface protein [Enterococcus faecium E4452]
gi|364094611|gb|EHM36758.1| ribosomal subunit interface protein [Enterococcus faecium E4453]
gi|402924022|gb|EJX44264.1| ribosomal subunit interface protein [Enterococcus faecium S447]
gi|402930465|gb|EJX50116.1| ribosomal subunit interface protein [Enterococcus faecium R499]
gi|402932942|gb|EJX52408.1| ribosomal subunit interface protein [Enterococcus faecium R496]
gi|402943463|gb|EJX61948.1| ribosomal subunit interface protein [Enterococcus faecium P1986]
gi|402946270|gb|EJX64554.1| ribosomal subunit interface protein [Enterococcus faecium R446]
gi|402955996|gb|EJX73483.1| ribosomal subunit interface protein [Enterococcus faecium P1140]
gi|402976604|gb|EJX92482.1| ribosomal subunit interface protein [Enterococcus faecium ERV168]
gi|402985772|gb|EJY00952.1| ribosomal subunit interface protein [Enterococcus faecium ERV165]
gi|402985897|gb|EJY01058.1| ribosomal subunit interface protein [Enterococcus faecium ERV102]
gi|402989723|gb|EJY04635.1| ribosomal subunit interface protein [Enterococcus faecium ERV161]
gi|402993590|gb|EJY08188.1| ribosomal subunit interface protein [Enterococcus faecium E417]
gi|402995828|gb|EJY10252.1| ribosomal subunit interface protein [Enterococcus faecium ERV1]
gi|402999852|gb|EJY14021.1| ribosomal subunit interface protein [Enterococcus faecium E422]
gi|403007572|gb|EJY21138.1| ribosomal subunit interface protein [Enterococcus faecium C621]
gi|403014218|gb|EJY27235.1| ribosomal subunit interface protein [Enterococcus faecium 515]
gi|403036809|gb|EJY48150.1| ribosomal subunit interface protein [Enterococcus faecium 504]
gi|404469010|gb|EKA13851.1| ribosomal subunit interface protein [Enterococcus sp. GMD1E]
gi|410734809|gb|EKQ76727.1| ribosome-associated inhibitor protein Y [Enterococcus sp. GMD5E]
gi|430440475|gb|ELA50725.1| ribosomal subunit interface protein [Enterococcus faecium E0045]
gi|430484012|gb|ELA61047.1| ribosomal subunit interface protein [Enterococcus faecium E0269]
gi|430485482|gb|ELA62388.1| ribosomal subunit interface protein [Enterococcus faecium E0679]
gi|430489478|gb|ELA66092.1| ribosomal subunit interface protein [Enterococcus faecium E0680]
gi|430491688|gb|ELA68140.1| ribosomal subunit interface protein [Enterococcus faecium E0688]
gi|430497557|gb|ELA73594.1| ribosomal subunit interface protein [Enterococcus faecium E1050]
gi|430536499|gb|ELA76867.1| ribosomal subunit interface protein [Enterococcus faecium E1133]
gi|430538110|gb|ELA78409.1| ribosomal subunit interface protein [Enterococcus faecium E1185]
gi|430542593|gb|ELA82701.1| ribosomal subunit interface protein [Enterococcus faecium E1258]
gi|430547009|gb|ELA86951.1| ribosomal subunit interface protein [Enterococcus faecium E1552]
gi|430551951|gb|ELA91701.1| ribosomal subunit interface protein [Enterococcus faecium E1573]
gi|430556893|gb|ELA96384.1| ribosomal subunit interface protein [Enterococcus faecium E1575]
gi|430558358|gb|ELA97777.1| ribosomal subunit interface protein [Enterococcus faecium E1576]
gi|430561769|gb|ELB01023.1| ribosomal subunit interface protein [Enterococcus faecium E1578]
gi|430574156|gb|ELB12934.1| ribosomal subunit interface protein [Enterococcus faecium E1622]
gi|430575384|gb|ELB14100.1| ribosomal subunit interface protein [Enterococcus faecium E1620]
gi|430578420|gb|ELB16972.1| ribosomal subunit interface protein [Enterococcus faecium E1623]
gi|430580580|gb|ELB19047.1| ribosomal subunit interface protein [Enterococcus faecium E1626]
gi|430583156|gb|ELB21545.1| ribosomal subunit interface protein [Enterococcus faecium E1627]
gi|430586260|gb|ELB24521.1| ribosomal subunit interface protein [Enterococcus faecium E1634]
gi|430608466|gb|ELB45712.1| ribosomal subunit interface protein [Enterococcus faecium E2134]
gi|430612496|gb|ELB49536.1| ribosomal subunit interface protein [Enterococcus faecium E2297]
gi|430630516|gb|ELB66871.1| ribosomal subunit interface protein [Enterococcus faecium E1321]
gi|430633694|gb|ELB69848.1| ribosomal subunit interface protein [Enterococcus faecium E1644]
gi|430637689|gb|ELB73688.1| ribosomal subunit interface protein [Enterococcus faecium E2369]
gi|430640618|gb|ELB76452.1| ribosomal subunit interface protein [Enterococcus faecium E4389]
gi|430643124|gb|ELB78880.1| ribosomal subunit interface protein [Enterococcus faecium E2560]
gi|430646272|gb|ELB81763.1| ribosomal subunit interface protein [Enterococcus faecium E6045]
gi|430649281|gb|ELB84667.1| ribosomal subunit interface protein [Enterococcus faecium E6012]
Length = 183
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 DAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|296111497|ref|YP_003621879.1| phosphate starvation inducible stress related protein [Leuconostoc
kimchii IMSNU 11154]
gi|339491234|ref|YP_004705739.1| putative phosphate starvation inducible stress-like protein
[Leuconostoc sp. C2]
gi|295833029|gb|ADG40910.1| putative phosphate starvation inducible stress related protein
[Leuconostoc kimchii IMSNU 11154]
gi|338852906|gb|AEJ31116.1| putative phosphate starvation inducible stress related protein
[Leuconostoc sp. C2]
Length = 182
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 111/192 (57%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALREYVEKRLTKL---NRYIEEKSRANVNLRTY---KSDNSGKAEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+++ ++ + E DD+ + IVR K ++ P++ EA Q++ ++HDF+ F++ ET ++
Sbjct: 108 DSNDEIPAAEVDDDALQ--IVRTKQVDLKPMSPEEAALQMDLLEHDFFIFQDAETNTDSV 165
Query: 283 VYKRKAGGYGVI 294
+YKR+ G YG++
Sbjct: 166 IYKRQDGKYGLL 177
>gi|169832220|ref|YP_001718202.1| sigma 54 modulation protein/ribosomal protein S30EA [Candidatus
Desulforudis audaxviator MP104C]
gi|169639064|gb|ACA60570.1| sigma 54 modulation protein/ribosomal protein S30EA [Candidatus
Desulforudis audaxviator MP104C]
Length = 174
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++ ++GKN+E+T ++ +VE+++ K + K H V V LSV R EV
Sbjct: 1 MRIYVRGKNIEVTPALRGYVEKRLAK-LSKFEHHFGSVQVALSVEKDS-------HRVEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +YASIDLV ++++L + K K NR V
Sbjct: 53 TVPIDGM-ILRGEEVTGDMYASIDLVVEKLEKQLERYKGKL---------LNRRPGAGGV 102
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T+ E D + IVR K F + P+ V EA+ Q+ + H F+ F N E
Sbjct: 103 TREQETQEDEEEYR---------IVRTKRFALKPMPVDEAVMQMNLLGHSFFVFANAENQ 153
Query: 279 EINIVYKRKAGGYGVIIP 296
++N++Y+RK G YG+I P
Sbjct: 154 QVNVIYRRKDGHYGLIEP 171
>gi|366089973|ref|ZP_09456339.1| ribosome-associated factor Y [Lactobacillus acidipiscis KCTC 13900]
Length = 184
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 109/198 (55%), Gaps = 21/198 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE--VDVRLSVRGGEFGKGPRIRRC 156
+K+ ++G+N+E+T ++ +VE+K+ K + K+ V L V + K
Sbjct: 2 LKVNVRGENIEVTAALRGYVEKKLAK-LEKYFEDTSNSTAHVNLKVYSDKNAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +YASIDLV+ ++R++RK K K + R KG+ L+
Sbjct: 55 EVTI-PLPYLVLRAEETSPDMYASIDLVTDKLERQIRKHKTKINRKSRE-KGYKGLEFAS 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
PV++ E+ D + IVR K + P+ EA+ Q+E + H+F+ + + E
Sbjct: 113 PVSEKDESKDDDDIQ----------IVRTKNIALKPMDSEEAVLQMEMLGHNFFIYEDAE 162
Query: 277 TGEINIVYKRKAGGYGVI 294
+ +NIVY+R+ G YG+I
Sbjct: 163 SQGVNIVYRRRDGRYGLI 180
>gi|283768961|ref|ZP_06341867.1| ribosomal subunit interface protein [Bulleidia extructa W1219]
gi|283104318|gb|EFC05695.1| ribosomal subunit interface protein [Bulleidia extructa W1219]
Length = 175
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 31/195 (15%)
Query: 103 IQGKNLELTDTVKNHVEEKVG---KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
I GKN+E+T+ +++ +EEK+ K +L + V V R+ P ++ E+T
Sbjct: 5 IVGKNVEITEAMRSQIEEKLTGLEKYLLVDGNTVARVVARVY---------PNSQKVEIT 55
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
+ TK G VRAE + YA++DL ++ ++R+ K + S RH + + + E V
Sbjct: 56 IPTKV-GTVRAEVIQDDFYAALDLAMDKLEDQIRRQKTRLS--KRHREHLAKAFIDETV- 111
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
EEE+ EV VR K + +++ EAI Q+E + H FY + +EET +
Sbjct: 112 ----------HEEEN-----EVPVRTKIVQADKMSLDEAILQMELLGHSFYVYTDEETNK 156
Query: 280 INIVYKRKAGGYGVI 294
IVY+R GGYG++
Sbjct: 157 KAIVYQRDLGGYGLL 171
>gi|169350334|ref|ZP_02867272.1| hypothetical protein CLOSPI_01095 [Clostridium spiroforme DSM 1552]
gi|169293117|gb|EDS75250.1| ribosomal subunit interface protein [Clostridium spiroforme DSM
1552]
Length = 175
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 108/196 (55%), Gaps = 24/196 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+E+T+ +++ + +K+ K + K+ + V+ ++ R +G+ + EV
Sbjct: 1 MKISVRGKNIEITEAIESKISDKLSK-LDKYFIVSDNVEAKVLCRVYPYGQ-----KLEV 54
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T+ + ++RAE +Y ++DLV ++ ++RK K + S + N+L
Sbjct: 55 TIPTE-YVLLRAEVVDSDLYTAMDLVVDKLEGQIRKYKTRLSRKSKD----NKLAFNLSS 109
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ VE D D+V+V++K P+ + EAI Q+E + H F+ +R+ E+
Sbjct: 110 IEDVETD-------------DDVLVKVKSITPKPMDMEEAIMQMELIGHSFFVYRDAESD 156
Query: 279 EINIVYKRKAGGYGVI 294
I+IVY+R G YG+I
Sbjct: 157 SISIVYRRNDGDYGLI 172
>gi|19703796|ref|NP_603358.1| sigma(54) modulation protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713942|gb|AAL94657.1| Probable sigma(54) modulation protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 181
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATESDLYASIDKAVDIMESLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D V+ EE+ + ++ +VR+ + + P+ +SEAI QLE ++ F+ F N T
Sbjct: 106 RKKSYSFDYIVEPEEKLSD--EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNTTT 162
Query: 278 GEINIVYKRKAGGYGVI 294
G++ +VYKRK G YGVI
Sbjct: 163 GKMAVVYKRKDGDYGVI 179
>gi|195978647|ref|YP_002123891.1| ribosomal subunit interface protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975352|gb|ACG62878.1| ribosomal subunit interface protein [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 182
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 109/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ + +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVVEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+QV ++ + + EE +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 SQVFTSEFEAEQAEETPEIK---VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G G+I K
Sbjct: 164 ATNVLYRREDGDLGLIEAK 182
>gi|154509498|ref|ZP_02045140.1| hypothetical protein ACTODO_02030 [Actinomyces odontolyticus ATCC
17982]
gi|153799132|gb|EDN81552.1| ribosomal subunit interface protein [Actinomyces odontolyticus ATCC
17982]
Length = 214
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFREYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAEAE 113
Query: 214 VREPVTQVVENDADVQSEE------EDDNFVDE----------VIVRMKFFEMPPLTVSE 257
+ E VVE A + E +D V E +IVR K E PP++V E
Sbjct: 114 ILE--APVVEETATFEPEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDE 171
Query: 258 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
A++Q+ V H F+ F +++T + +VY R YGV+
Sbjct: 172 ALDQMMMVGHPFFLFVDKDTNQPCVVYHRHGWTYGVL 208
>gi|291518130|emb|CBK73351.1| Sigma 54 modulation protein / S30EA ribosomal protein [Butyrivibrio
fibrisolvens 16/4]
Length = 122
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 14/134 (10%)
Query: 164 KHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVE 223
K +RAEE +YASI+ V++ ++ +L+K + K D R + ++ + + V
Sbjct: 2 KGSYLRAEEVTSDMYASIEAVTNTLEAQLKKHRNKIID--RKQSDSRVIFAQDFIEEKVA 59
Query: 224 NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 283
++ +Q I+R K F+M P+ +A ++E + HDF+ FRN +T EIN+V
Sbjct: 60 DEEKIQ------------IIRTKKFDMKPMYAEDACLEMEMLGHDFFMFRNADTDEINVV 107
Query: 284 YKRKAGGYGVIIPK 297
YKRK G YG+I P+
Sbjct: 108 YKRKNGAYGLIEPE 121
>gi|404369856|ref|ZP_10975183.1| ribosomal subunit interface protein [Clostridium sp. 7_2_43FAA]
gi|226914017|gb|EEH99218.1| ribosomal subunit interface protein [Clostridium sp. 7_2_43FAA]
Length = 178
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 14/130 (10%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDA 226
++RAEE E +Y SIDLV + ++R++RK + K S F +L +VVE +
Sbjct: 60 ILRAEESTEDMYKSIDLVVAKLERQIRKQRTKLSRRNNESLRFPQLDEVALSDEVVETNG 119
Query: 227 DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKR 286
+V V++K F + P++V EA+ Q+E V H+F+ +++ E ++ +VYKR
Sbjct: 120 EV--------------VKVKRFGVKPMSVEEAVLQMELVGHNFFVYQDSEANKVCVVYKR 165
Query: 287 KAGGYGVIIP 296
K G YG++ P
Sbjct: 166 KDGDYGLLEP 175
>gi|19551984|ref|NP_599986.1| ribosome-associated protein Y [Corynebacterium glutamicum ATCC
13032]
gi|62389646|ref|YP_225048.1| ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum
ATCC 13032]
gi|145294921|ref|YP_001137742.1| hypothetical protein cgR_0867 [Corynebacterium glutamicum R]
gi|417971988|ref|ZP_12612904.1| hypothetical protein CgS9114_13226 [Corynebacterium glutamicum
S9114]
gi|418246666|ref|ZP_12873060.1| hypothetical protein KIQ_14292 [Corynebacterium glutamicum ATCC
14067]
gi|21323525|dbj|BAB98152.1| Ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum
ATCC 13032]
gi|41324981|emb|CAF19462.1| Ribosome-associated protein Y (PSrp-1) [Corynebacterium glutamicum
ATCC 13032]
gi|140844841|dbj|BAF53840.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043742|gb|EGV39430.1| hypothetical protein CgS9114_13226 [Corynebacterium glutamicum
S9114]
gi|354509281|gb|EHE82216.1| hypothetical protein KIQ_14292 [Corynebacterium glutamicum ATCC
14067]
gi|385142906|emb|CCH23945.1| ribosome-associated protein Y [Corynebacterium glutamicum K051]
Length = 221
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 41/219 (18%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC--- 156
K+ I G+N+E+ D H E+V + K + +D L+ E P RR
Sbjct: 15 KVSITGRNVEVPD----HFAERVNTKLAK----IERLDPTLTFFHVELQHEPNPRRADES 66
Query: 157 ---EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
++T K H + RAE ++ YA+++ + ++R LRK+K + S +R
Sbjct: 67 DRIQITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRS--------ISRSG 117
Query: 214 VREPV------TQVVENDADVQSEEE-----DDNFVDEV-------IVRMKFFEMPPLTV 255
R P+ Q+V + + +E D + D+V +VR K P++V
Sbjct: 118 HRAPLGTGEVGAQLVAESQEARGADELGKYDVDPYADKVDDVMPGQVVRTKEHPATPMSV 177
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ ++E V HDFY F NEET + ++VY+R A YG+I
Sbjct: 178 DDALSEMELVGHDFYLFVNEETNQPSVVYRRHAFDYGLI 216
>gi|296328456|ref|ZP_06870977.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154422|gb|EFG95219.1| ribosome-associated protein Y [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 181
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 19/197 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I G+ + LTD ++ + EEK+ K V K + + ++D L+ + G E+
Sbjct: 1 MKLSIHGRKITLTDAIRKYAEEKISK-VEKFNDSIIKIDATLAASKLKTGNA---HVTEI 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ ++A +YASID I++ L+K KEK S R KV++
Sbjct: 57 LAYLS-GSTLKATATETDLYASIDKAVDIMESLLKKHKEKRS----------RAKVQDDT 105
Query: 219 -TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ D V+ EE+ + ++ +VR+ + + P+ +SEAI QLE ++ F+ F N T
Sbjct: 106 RKKSYSFDYIVEPEEKLSD--EKKLVRV-YLPLKPMEISEAILQLEYLNRVFFAFTNTTT 162
Query: 278 GEINIVYKRKAGGYGVI 294
G++ +VYKRK G YGVI
Sbjct: 163 GKMAVVYKRKDGDYGVI 179
>gi|295836934|ref|ZP_06823867.1| S30AE family protein [Streptomyces sp. SPB74]
gi|295826283|gb|EDY45817.2| S30AE family protein [Streptomyces sp. SPB74]
Length = 279
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 44 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 102
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 103 ITLRSRG-PVIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGTERLTAAEV 157
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFV-------------DEVIVRMKFFEMPPLTVSEA 258
P T + D + E E D V ++VR K P+++ +A
Sbjct: 158 AERVPGTAGLNEDGTFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 217
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 218 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 253
>gi|377832081|ref|ZP_09815045.1| ribosome-associated inhibitor protein Y [Lactobacillus mucosae LM1]
gi|377554088|gb|EHT15803.1| ribosome-associated inhibitor protein Y [Lactobacillus mucosae LM1]
Length = 180
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K I+G+N+E+T++++++V +++ K ++ V L V + K E
Sbjct: 2 LKFNIRGENVEVTESIRDYVIKRISKLEKFFEDNVEANAHVNLKVYPNKTFK------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG+ +
Sbjct: 56 VTI-PLPYLTLRAEETSSDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGYKNM----- 108
Query: 218 VTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
D + ED+ D++ IVR K + P+ EA+ Q++ + HDF+ F + E
Sbjct: 109 ---------DFVPDVEDEPVSDDLKIVRTKQISLKPMDPEEAVLQMDMLGHDFFVFEDAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+RK G YG+I
Sbjct: 160 TNGTSVVYRRKDGRYGLI 177
>gi|188997628|ref|YP_001931879.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932695|gb|ACD67325.1| sigma 54 modulation protein/ribosomal protein S30EA
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 187
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 106/204 (51%), Gaps = 33/204 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDV-----RLSVRGGEFGKGPRIRRCEVT 159
GKN+E+TD +K + E K+ + H ++++DV R+ V +F K R ++
Sbjct: 7 GKNIEITDFIKAYTEHKLERL----KHYLKDLDVAPDSVRVRV-VYDFEKHRHRNRVDID 61
Query: 160 LF--TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
++ T GV+ A E++ +Y++ID V ++R+L ++K++ + R ++K E
Sbjct: 62 VYLNTPGGGVIHAWEESNDLYSAIDFVIDEVERQLVRLKQRRIEASRRESRLEKMK--EH 119
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMP---PLTVSEAIEQLENVDHDFYGFRN 274
Q ++ ++ ++ ++ MP PLTV +A LE F F N
Sbjct: 120 TVQ--------------ESSIERALIVIE--PMPSEKPLTVEDARLMLEETGAFFLPFIN 163
Query: 275 EETGEINIVYKRKAGGYGVIIPKG 298
ETGE+N++Y++KAG YG+I P+
Sbjct: 164 SETGEVNVIYRKKAGNYGLITPRA 187
>gi|414153365|ref|ZP_11409692.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
gi|411455747|emb|CCO07595.1| conserved hypothetical protein [Desulfotomaculum hydrothermale Lam5
= DSM 18033]
Length = 173
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+++T ++++VE+++ K + + + E L V G + EV
Sbjct: 1 MKVQVRGKNIQVTPALRDYVEKRLNK-LDRFLDNMGEAVATLVVEGDS-------HKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE +Y+S+DLV ++R++ + K + NR R
Sbjct: 53 TIPVNGM-LLRGEEATGEMYSSVDLVVEKLERQIERYKAR----------INRRSGRSAT 101
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
V E D + +++ K F + P+++ EAI Q+ + HDF+ F N ET
Sbjct: 102 GAVAEADKPADEAPQ--------VIKTKRFAIKPMSLDEAILQMNLLGHDFFVFSNAETE 153
Query: 279 EINIVYKRKAGGYGVIIP 296
+ N+VY+RK G YG+I P
Sbjct: 154 QTNVVYRRKDGNYGLIEP 171
>gi|395239464|ref|ZP_10417343.1| Ribosome-associated inhibitor protein Y [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394476371|emb|CCI87320.1| Ribosome-associated inhibitor protein Y [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 181
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+TD ++++V++++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTDALRSYVDKRL-KKLEKYFELSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE+ D IVR K + P+ EAI Q++ + HDF+ F++ E
Sbjct: 113 PA-----------EEEKKTGEFD--IVRNKRVSLKPMEPEEAILQMDMLGHDFFVFQDAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 160 TNGTSVVYRRNDGRYGLI 177
>gi|405981406|ref|ZP_11039733.1| ribosomal subunit interface protein [Actinomyces neuii BVS029A5]
gi|404392330|gb|EJZ87390.1| ribosomal subunit interface protein [Actinomyces neuii BVS029A5]
Length = 218
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 50/228 (21%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAV------------LKHSHLVREVDVRLSVRGGE 146
+ +I+ +N E+ + +VEEKV K L H R+ D +
Sbjct: 1 MDIIVNARNAEIHPNFREYVEEKVSKVTQFYPRAQRVNVELNHERNPRQADTAERIELTV 60
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 206
GKGP V+RAE + YA++D+ + + +LR+ +++ DH
Sbjct: 61 HGKGP---------------VIRAEASSSDRYAAVDIAAGKLYERLRRARDRAKDH---R 102
Query: 207 KGFNRLKVREP------------------VTQVVENDADVQSEEEDDNFVDE--VIVRMK 246
KG + +P V + ++ AD+++ EE + + + VIVR K
Sbjct: 103 KGVTHQETEKPLDIEALKFELAVEDAPKAVHEETKSVADMKAGEEREEQLGDSPVIVRQK 162
Query: 247 FFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E +TVSEA+ Q+E V H FY F + ET + +VY+R YGV+
Sbjct: 163 LHEPDRMTVSEALYQMELVGHPFYLFVDTETSQPCVVYRRHGWTYGVL 210
>gi|333024921|ref|ZP_08452985.1| putative S30AE family protein [Streptomyces sp. Tu6071]
gi|332744773|gb|EGJ75214.1| putative S30AE family protein [Streptomyces sp. Tu6071]
Length = 292
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 57 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 115
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 116 ITLRSRGP-VIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGSERLTAAEV 170
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFV-------------DEVIVRMKFFEMPPLTVSEA 258
P T + D + E E D V ++VR K P+++ +A
Sbjct: 171 AERVPGTAGLNEDGSFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 230
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 231 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 266
>gi|269128236|ref|YP_003301606.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Thermomonospora curvata DSM 43183]
gi|268313194|gb|ACY99568.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermomonospora curvata DSM 43183]
Length = 221
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 32/222 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI--RRC 156
+ +I++G++ E+ D + HV+ K+ K + + + + VDV +S PR+ RR
Sbjct: 1 MDIIVKGRHTEVNDRFREHVDNKLAK-IERFARKIIRVDVEVSEE-----HNPRLADRRE 54
Query: 157 EVTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMKGFNRLKV 214
V L + G V+RAE AE Y ++DL ++ +LR+ ++ H + +L
Sbjct: 55 RVELTIRSRGPVIRAEAAAEDRYGALDLALDKLEARLRRSADRRKIHYNSGTRAPAKLAH 114
Query: 215 REPVTQ---------------VVENDADVQSEEEDDNFV-------DEVIVRMKFFEMPP 252
EP+T+ E A + EE N V ++VR KF P
Sbjct: 115 LEPLTEPPAAAPPEDSAEGAPAAEPAAATEPAEEGGNVVPIAMDGDGPLVVREKFHRSAP 174
Query: 253 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+T+ +A+ ++E V HDF+ FR++E G ++VY+RK YGVI
Sbjct: 175 MTIDQALYEMELVGHDFFLFRDKENGHPSVVYRRKGWNYGVI 216
>gi|206891020|ref|YP_002248083.1| SSU ribosomal protein S30P [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742958|gb|ACI22015.1| SSU ribosomal protein S30P [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 173
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 106/198 (53%), Gaps = 27/198 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ I+GKN+++T+ +K ++E++V K L + +++ +F + +V
Sbjct: 1 MKITIRGKNIDVTEALKQYIEKRVTKF---ERFLTDTSEAIVTISTEKFT-----HKIDV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
L H +++AE E +Y+++D V +++++ K KEK + + +K +
Sbjct: 53 LLKVDGH-LIQAEGKTEDLYSAVDQVVEKLEKQVLKYKEKVQNKNKK----ETIKYPSAL 107
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
++ VE IV+ K F++ P++ EA++QLE +D DF+ F N +G
Sbjct: 108 SEEVETAKR--------------IVKYKKFDLRPMSPEEAVDQLELLDKDFFIFINSFSG 153
Query: 279 EINIVYKRKAGGYGVIIP 296
++N++YKRK G +G+I P
Sbjct: 154 DVNVIYKRKDGNFGLIEP 171
>gi|328956711|ref|YP_004374097.1| ribosome-associated sigma 54 modulation protein [Carnobacterium sp.
17-4]
gi|328673035|gb|AEB29081.1| ribosome-associated sigma 54 modulation protein [Carnobacterium sp.
17-4]
Length = 180
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 109/192 (56%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++++VE+KVGK V K+ + V E ++++ + + EVT+
Sbjct: 6 VRGENIEVTAAIRSYVEKKVGK-VEKYFNDVPEATAHVNLKT----YSDKTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +Y SIDLV+ ++R++RK K K + R +G N VV
Sbjct: 60 LPYLVLRAEETSPDLYGSIDLVTDKLERQMRKYKTKVN---RRSRGSN---------VVV 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ EE ++ V+ IVR K + P+ EA+ Q++ + H+F+ F + +T +I
Sbjct: 108 PPALPGEEEELMEDEVN--IVRTKRLSLKPMDSEEAVLQMDMLGHNFFIFEDADTNGTSI 165
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 166 VYRRKDGKYGLI 177
>gi|322390989|ref|ZP_08064494.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 903]
gi|321142293|gb|EFX37766.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 903]
Length = 180
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRIKSGAGKL----FT 111
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
VVE A + +VR K ++ P+ + EAI Q++ + HDF+ +R+ E
Sbjct: 112 DAVVEEAATTEK-----------VVRSKTIDLEPMDLDEAILQMDLLAHDFFIYRDAEDN 160
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 161 TTNVIYRREDGDIGLL 176
>gi|296118808|ref|ZP_06837384.1| S30AE family protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968297|gb|EFG81546.1| S30AE family protein [Corynebacterium ammoniagenes DSM 20306]
Length = 217
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 34/218 (15%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR- 155
++ ++ I G+N+E+ + + V+ K+ K + +D L+ E P RR
Sbjct: 6 TAAQVTITGRNVEVPEHFSDRVKAKLAK--------IERLDPTLTFFHVELQHEPNPRRD 57
Query: 156 -----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMK 207
++T K H + RAE ++ YAS++ + ++R LRK+K E R K
Sbjct: 58 AQAERIQITATGKGH-IARAEAKEDSFYASLETAVAKMERSLRKVKVRREATKSGHRARK 116
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEV-----------IVRMKFFEMPPLTVS 256
G L ++V + + ++ +D VD IVR K P++V
Sbjct: 117 GTGEL-----AAEIVADAEAAREQQREDRMVDPYAESIEDQRPGQIVRSKEHAATPMSVD 171
Query: 257 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
A+ ++E V HDFY F NEET ++VY+R A YG+I
Sbjct: 172 AALSEMELVGHDFYLFINEETQRPSVVYRRHAFDYGLI 209
>gi|417794046|ref|ZP_12441309.1| ribosomal subunit interface protein [Streptococcus oralis SK255]
gi|334271156|gb|EGL89550.1| ribosomal subunit interface protein [Streptococcus oralis SK255]
Length = 182
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 109/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DADV V +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 111 TDALVEDADV---------VQPKVVRSKQIDLKPMDLEEALLQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ GG G++
Sbjct: 162 TTNVLYRREDGGVGLL 177
>gi|337281493|ref|YP_004620964.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 15912]
gi|387878772|ref|YP_006309075.1| ribosomal subunit interface protein [Streptococcus parasanguinis
FW213]
gi|417917996|ref|ZP_12561550.1| ribosomal subunit interface protein [Streptococcus parasanguinis
SK236]
gi|419800675|ref|ZP_14325944.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0449]
gi|335369086|gb|AEH55036.1| ribosomal subunit interface protein [Streptococcus parasanguinis
ATCC 15912]
gi|342829311|gb|EGU63669.1| ribosomal subunit interface protein [Streptococcus parasanguinis
SK236]
gi|385694406|gb|EIG25012.1| ribosomal subunit interface protein [Streptococcus parasanguinis
F0449]
gi|386792229|gb|AFJ25264.1| ribosomal subunit interface protein [Streptococcus parasanguinis
FW213]
Length = 180
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K R G +L
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIEKKNRVKSGAGKL-----F 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T V +A E +VR K ++ P+ + EAI Q++ + HDF+ +R+ E
Sbjct: 111 TDAVVEEATTT----------EKVVRSKTIDLEPMDIDEAILQMDLLAHDFFIYRDAEDN 160
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 161 TTNVIYRREDGDIGLL 176
>gi|436841972|ref|YP_007326350.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170878|emb|CCO24249.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 179
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 22/162 (13%)
Query: 135 EVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK 194
E+ V LSV + R + + H + A E++E +Y+++DLV ++ +LR+
Sbjct: 38 EMQVNLSV--------DKFRHVAEVVLSSDHIHISAYEESEDMYSTVDLVLDKLEVQLRR 89
Query: 195 IKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLT 254
++EK H R +V DV S +E+D + VIV F P++
Sbjct: 90 MREKMRSHRR--------------KEVTSARMDVISFDEEDENREPVIVESDSFVPKPMS 135
Query: 255 VSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
+ EA QL+ +DH+F FRN + IN++Y+R G +G+I P
Sbjct: 136 IDEAAMQLQTLDHEFLVFRNADNEAINVIYRRNNGDFGLIDP 177
>gi|418131375|ref|ZP_12768255.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07643]
gi|353800790|gb|EHD81099.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07643]
Length = 190
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 113/197 (57%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREP 217
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K E + ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNKTKIERKNKNKV--- 112
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 113 ATGQLFTDALV----EDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVED 168
Query: 278 GEINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 169 QTTNVIYRREDGEIGLL 185
>gi|386846022|ref|YP_006264035.1| sigma 54 modulation protein/ribosomal protein S30EA [Actinoplanes
sp. SE50/110]
gi|359833526|gb|AEV81967.1| sigma 54 modulation protein/ribosomal protein S30EA [Actinoplanes
sp. SE50/110]
Length = 205
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 19/208 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV +K+ K L+R VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYREHVADKLSKVERYDQKLMR-VDVELF-----HERNPRQSDTCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHMK-GFNRL 212
R E+T+ TK VVRAE A+ YA++D + + +LR+ ++ H GRH
Sbjct: 55 RVEITVMTKG-PVVRAEAQAQDFYAALDCAINKLDARLRRSADRRRVHRGRHAPVSVAAA 113
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDE------VIVRMKFFEMPPLTVSEAIEQLENVD 266
P A + +E E D + IVR K P+TV +A+ Q+E V
Sbjct: 114 TANLPTDLTRGGAATLTAEPEVDELTEHDDGQPWRIVREKEHSGEPMTVDDALFQMELVG 173
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVI 294
HDFY F ++E+G ++VY+R+ YG++
Sbjct: 174 HDFYLFHDKESGRPSVVYRRRGYDYGIL 201
>gi|145593528|ref|YP_001157825.1| ribosomal subunit interface protein [Salinispora tropica CNB-440]
gi|145302865|gb|ABP53447.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Salinispora tropica CNB-440]
Length = 208
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 26/213 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K + ++ H + VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHFRVHVAEKLAK-IERYDHKIIRVDVELF-----HERNPRQADHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHMK-GFNRL 212
R E+T ++ V+RAE Y+++D ++ + R R + HGRH
Sbjct: 55 RVEITCVSRG-PVMRAEAGTSDFYSALDAAIARLDARMRRAADRRRVHHGRHAPISVAAA 113
Query: 213 KVREPVTQVVEN-----------DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQ 261
PVT +V A+ EE DD I R K P+T+ +A+ Q
Sbjct: 114 TAGLPVTDLVAGPLSADAATATAVAERAEEEHDDQPWH--IAREKVHPAEPMTIDDALFQ 171
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDFY F+++E+G ++VY+R A YG+I
Sbjct: 172 MELVGHDFYLFQDKESGRPSVVYRRHAYDYGII 204
>gi|417091490|ref|ZP_11956367.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis R61]
gi|353533098|gb|EHC02765.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis R61]
Length = 180
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTDALRTYVEEKVTK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
QV ++ Q+ EE +VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEVK------VVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAN 158
Query: 277 TGEINIVYKRKAGGYGVI 294
G N++Y+R+ G G++
Sbjct: 159 DGTTNVLYRREDGDLGLL 176
>gi|294102171|ref|YP_003554029.1| sigma 54 modulation protein/ribosomal protein S30EA [Aminobacterium
colombiense DSM 12261]
gi|293617151|gb|ADE57305.1| sigma 54 modulation protein/ribosomal protein S30EA [Aminobacterium
colombiense DSM 12261]
Length = 179
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 29/196 (14%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
+N + D +++++ EKV K R +D ++ V FG+G + E+T +
Sbjct: 7 ARNAVIDDELRSYMREKVSKL---GKFFNRILDNQVLV---SFGRG--MHNVEIT--SNA 56
Query: 165 HGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVTQ 220
+GV+ R+EE A + + D I+R++++ H ++K L+ R+ +
Sbjct: 57 NGVIMRSEESAPDMRKAFDKALKNIERQIKR-------HNDYLKDRALLRTRDISFNLEG 109
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
VE + + +EEE IV+ K F + P+T EA Q+E + H+F+ F+N ETG +
Sbjct: 110 FVETEPLLPAEEE--------IVKTKRFPLRPMTAKEATMQMELLGHEFFLFKNVETGLV 161
Query: 281 NIVYKRKAGGYGVIIP 296
N+VYKRK GG+G+I P
Sbjct: 162 NVVYKRKNGGFGLIEP 177
>gi|269219047|ref|ZP_06162901.1| S30AE family protein [Actinomyces sp. oral taxon 848 str. F0332]
gi|269212158|gb|EEZ78498.1| S30AE family protein [Actinomyces sp. oral taxon 848 str. F0332]
Length = 212
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 15/208 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++I++G+N E++D + HV EK+ K + + + + VDV ++ + R E+
Sbjct: 1 MEIIVKGRNAEVSDRFRTHVNEKLSK-IEQFAPRAQRVDVEITHEPNP-SQAEVSERIEI 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HM--------K 207
T+ K V+RAE A Y ++DL S + +LR+ +++ +H R H+ K
Sbjct: 59 TVIDKG-PVIRAEAAASDRYGALDLASGKLLERLRRARDRRKEHRRSDAHVSAPLTLTPK 117
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVD 266
N K +E V EE ++ D V+VR K +E P++V +A+ ++E V
Sbjct: 118 DVNIPKAKEQAAPEAAKVPTVPGEEVENQLGDSPVVVRQKLYEAQPMSVDQALYEMELVG 177
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVI 294
H FY F +EET + VY R YGVI
Sbjct: 178 HPFYLFIDEETKQPCAVYHRHGWTYGVI 205
>gi|309804568|ref|ZP_07698633.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
09V1-c]
gi|308165960|gb|EFO68178.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
09V1-c]
Length = 185
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD +K++VE EK+ K S ++ V++++ + +
Sbjct: 2 LKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVY--------SEKSSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E + D DV S ++ V IVR K + P+ EAI Q+ + H+F+ F +
Sbjct: 102 ERGMRDFFYDTDVASGATEEKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFED 161
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T +IVY+R G YG+I
Sbjct: 162 ADTNGTSIVYRRNDGRYGLI 181
>gi|259506533|ref|ZP_05749435.1| S30AE family protein [Corynebacterium efficiens YS-314]
gi|259165953|gb|EEW50507.1| S30AE family protein [Corynebacterium efficiens YS-314]
Length = 234
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 41/216 (18%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC------ 156
I G+N+E V H E+V K + K + +D L+ E P RR
Sbjct: 28 ITGRNVE----VPEHFAERVHKKLAK----IERLDPTLTFFHVELQHEPNPRRADESNRI 79
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
++T K H + RAE ++ YA+++ + ++R LRK+K + S +R R
Sbjct: 80 QITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRS--------ISRSGHRA 130
Query: 217 PVT------QVVEND-----ADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEA 258
P++ Q+V AD + + D + D+V IVR K P++V +A
Sbjct: 131 PLSTGEVGAQLVAESQEARGADDLGKYDVDPYADKVDDVVPGQIVRTKEHPATPMSVDDA 190
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F NEET + ++VY+R A YG+I
Sbjct: 191 LSEMELVGHDFYLFINEETQQPSVVYRRHAFDYGLI 226
>gi|403667839|ref|ZP_10933139.1| hypothetical protein KJC8E_03657 [Kurthia sp. JC8E]
Length = 186
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 14/192 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T ++ +VE K+ K + E+D +V + + + EVT+
Sbjct: 6 IRGENIEVTPAIREYVESKLSKL---ERYFNNEMDATANVNLKTYN--DKRTKVEVTIPM 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
K+ +RAEE + +Y +D + + ++R++RK K K + R +G P +
Sbjct: 61 KRL-TLRAEERNDDLYTGVDAIVAKLERQIRKHKTKINRKFREREGVGVYFATVPSQETE 119
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
A+ + E E IVR K F + P+ EAI Q+ + HDF+ F + E+ E NI
Sbjct: 120 AVQAEQEEELE--------IVRTKQFSLKPMDDEEAILQMNLLGHDFFIFTDSESNETNI 171
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 172 VYRRKDGKYGLI 183
>gi|284029595|ref|YP_003379526.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Kribbella
flavida DSM 17836]
gi|283808888|gb|ADB30727.1| sigma 54 modulation protein/ribosomal protein S30EA [Kribbella
flavida DSM 17836]
Length = 207
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 37/218 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G + E++D + +VEEK+ + + K H V +V +S K PR
Sbjct: 1 MDVVVKGHHCEVSDRFRQYVEEKLAR-IEKVDHRVLRCEVEVSQE-----KNPRQHDRAM 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHM-KGFNRL 212
R E+T++TK VVRAE ET A+ D+ ++ ++RK ++ H G H +G L
Sbjct: 55 RVELTMYTKG-PVVRAEACGETKQAAFDVSLDRLRAQVRKAADRRRVHRGEHAPEGLRHL 113
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEV----------------IVRMKFFEMPPLTVS 256
++PV + + E +D+ DEV ++R K P+++
Sbjct: 114 NAKQPVNGL--------APEAEDSTEDEVPTQKIGSLTVTGDGPLVMREKTHTAKPMSLD 165
Query: 257 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ +LE V HDFY F + + + ++VY+R+ YGVI
Sbjct: 166 QALYELELVGHDFYLFVDADENQPSVVYRRRGYDYGVI 203
>gi|69249984|ref|ZP_00605075.1| Sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium DO]
gi|257879879|ref|ZP_05659532.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,230,933]
gi|257884037|ref|ZP_05663690.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,501]
gi|389869213|ref|YP_006376636.1| ribosome-associated inhibitor protein Y [Enterococcus faecium DO]
gi|424966086|ref|ZP_18379930.1| ribosomal subunit interface protein [Enterococcus faecium P1190]
gi|424975037|ref|ZP_18388230.1| ribosomal subunit interface protein [Enterococcus faecium P1137]
gi|424980978|ref|ZP_18393734.1| ribosomal subunit interface protein [Enterococcus faecium ERV99]
gi|425021271|ref|ZP_18431538.1| ribosomal subunit interface protein [Enterococcus faecium C497]
gi|425025990|ref|ZP_18434757.1| ribosomal subunit interface protein [Enterococcus faecium C1904]
gi|425044675|ref|ZP_18448816.1| ribosomal subunit interface protein [Enterococcus faecium 510]
gi|425051788|ref|ZP_18455430.1| ribosomal subunit interface protein [Enterococcus faecium 506]
gi|430831061|ref|ZP_19449114.1| ribosomal subunit interface protein [Enterococcus faecium E0333]
gi|430855238|ref|ZP_19472947.1| ribosomal subunit interface protein [Enterococcus faecium E1392]
gi|431414451|ref|ZP_19512270.1| ribosomal subunit interface protein [Enterococcus faecium E1630]
gi|431546349|ref|ZP_19518974.1| ribosomal subunit interface protein [Enterococcus faecium E1731]
gi|431637445|ref|ZP_19523214.1| ribosomal subunit interface protein [Enterococcus faecium E1904]
gi|431755190|ref|ZP_19543844.1| ribosomal subunit interface protein [Enterococcus faecium E2883]
gi|431759665|ref|ZP_19548276.1| ribosomal subunit interface protein [Enterococcus faecium E3346]
gi|447912253|ref|YP_007393665.1| Ribosomal subunit interface protein [Enterococcus faecium NRRL
B-2354]
gi|68194045|gb|EAN08596.1| Sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium DO]
gi|257814107|gb|EEV42865.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,230,933]
gi|257819875|gb|EEV47023.1| sigma 54 modulation protein/ribosomal protein S30EA [Enterococcus
faecium 1,231,501]
gi|388534462|gb|AFK59654.1| ribosome-associated inhibitor protein Y [Enterococcus faecium DO]
gi|402941829|gb|EJX60499.1| ribosomal subunit interface protein [Enterococcus faecium P1190]
gi|402954953|gb|EJX72528.1| ribosomal subunit interface protein [Enterococcus faecium P1137]
gi|402964805|gb|EJX81562.1| ribosomal subunit interface protein [Enterococcus faecium ERV99]
gi|403006056|gb|EJY19728.1| ribosomal subunit interface protein [Enterococcus faecium C1904]
gi|403007275|gb|EJY20863.1| ribosomal subunit interface protein [Enterococcus faecium C497]
gi|403029069|gb|EJY40844.1| ribosomal subunit interface protein [Enterococcus faecium 510]
gi|403036697|gb|EJY48039.1| ribosomal subunit interface protein [Enterococcus faecium 506]
gi|430481932|gb|ELA59073.1| ribosomal subunit interface protein [Enterococcus faecium E0333]
gi|430547244|gb|ELA87180.1| ribosomal subunit interface protein [Enterococcus faecium E1392]
gi|430589184|gb|ELB27329.1| ribosomal subunit interface protein [Enterococcus faecium E1630]
gi|430591668|gb|ELB29697.1| ribosomal subunit interface protein [Enterococcus faecium E1731]
gi|430602329|gb|ELB39904.1| ribosomal subunit interface protein [Enterococcus faecium E1904]
gi|430617190|gb|ELB54064.1| ribosomal subunit interface protein [Enterococcus faecium E2883]
gi|430625846|gb|ELB62449.1| ribosomal subunit interface protein [Enterococcus faecium E3346]
gi|445187962|gb|AGE29604.1| Ribosomal subunit interface protein [Enterococcus faecium NRRL
B-2354]
Length = 183
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 NAAALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|297571962|ref|YP_003697736.1| ribosomal subunit interface protein [Arcanobacterium haemolyticum
DSM 20595]
gi|296932309|gb|ADH93117.1| ribosomal subunit interface protein [Arcanobacterium haemolyticum
DSM 20595]
Length = 222
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 25/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +++G+N E++D + VEEK+ K + + + + V+V ++ + R E+
Sbjct: 1 MEFVVKGRNAEVSDNFREFVEEKLAK-IEQFAPRAQRVEVEVTHEPNP-AQAEISERIEI 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH------------- 205
T+ K VVRAE A Y ++DL + + +LR+ EK D H
Sbjct: 59 TV-RDKGPVVRAEAAASDRYGAVDLAAQKLFERLRRKSEKMKDRKHHAVKDVPAGELNVD 117
Query: 206 --MKGFNRLKVREPVTQVVENDA---DVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIE 260
M KV EP + A V+++ D V+VR K +E P++V +A++
Sbjct: 118 ELMAEVKSAKVEEPAEEPTRPTAVGEAVETQVGDSP----VVVRQKLYEAKPMSVEQAVD 173
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V H F+ F +EET + Y+R+ YGVI
Sbjct: 174 EMELVGHPFFLFIDEETSQPCAAYRRRGWTYGVI 207
>gi|125718633|ref|YP_001035766.1| 30S ribosomal interface protein S30EA [Streptococcus sanguinis
SK36]
gi|422826956|ref|ZP_16875135.1| ribosomal subunit interface protein [Streptococcus sanguinis SK678]
gi|422847328|ref|ZP_16894011.1| ribosomal subunit interface protein [Streptococcus sanguinis SK72]
gi|422850313|ref|ZP_16896989.1| ribosomal subunit interface protein [Streptococcus sanguinis SK115]
gi|422853170|ref|ZP_16899834.1| ribosomal subunit interface protein [Streptococcus sanguinis SK160]
gi|422856780|ref|ZP_16903434.1| ribosomal subunit interface protein [Streptococcus sanguinis SK1]
gi|422857803|ref|ZP_16904453.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1057]
gi|422861260|ref|ZP_16907901.1| ribosomal subunit interface protein [Streptococcus sanguinis SK330]
gi|422863869|ref|ZP_16910498.1| ribosomal subunit interface protein [Streptococcus sanguinis SK408]
gi|422864290|ref|ZP_16910915.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1058]
gi|422878143|ref|ZP_16924613.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1056]
gi|422879985|ref|ZP_16926449.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1059]
gi|422880576|ref|ZP_16927032.1| ribosomal subunit interface protein [Streptococcus sanguinis SK355]
gi|422930408|ref|ZP_16963347.1| ribosomal subunit interface protein [Streptococcus sanguinis ATCC
29667]
gi|422930999|ref|ZP_16963930.1| ribosomal subunit interface protein [Streptococcus sanguinis SK340]
gi|125498550|gb|ABN45216.1| 30S ribosomal interface protein S30EA, putative [Streptococcus
sanguinis SK36]
gi|324994060|gb|EGC25974.1| ribosomal subunit interface protein [Streptococcus sanguinis SK678]
gi|325686905|gb|EGD28929.1| ribosomal subunit interface protein [Streptococcus sanguinis SK72]
gi|325688793|gb|EGD30802.1| ribosomal subunit interface protein [Streptococcus sanguinis SK115]
gi|325697722|gb|EGD39607.1| ribosomal subunit interface protein [Streptococcus sanguinis SK160]
gi|327459266|gb|EGF05612.1| ribosomal subunit interface protein [Streptococcus sanguinis SK1]
gi|327462465|gb|EGF08790.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1057]
gi|327467199|gb|EGF12703.1| ribosomal subunit interface protein [Streptococcus sanguinis SK330]
gi|327472692|gb|EGF18119.1| ribosomal subunit interface protein [Streptococcus sanguinis SK408]
gi|327490484|gb|EGF22265.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1058]
gi|332358071|gb|EGJ35904.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1056]
gi|332364561|gb|EGJ42330.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1059]
gi|332366347|gb|EGJ44098.1| ribosomal subunit interface protein [Streptococcus sanguinis SK355]
gi|339613902|gb|EGQ18624.1| ribosomal subunit interface protein [Streptococcus sanguinis ATCC
29667]
gi|339620975|gb|EGQ25543.1| ribosomal subunit interface protein [Streptococcus sanguinis SK340]
Length = 180
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ + ++EE V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE-----VPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDS 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 STNVIYRREDGDIGLL 177
>gi|359778349|ref|ZP_09281618.1| hypothetical protein ARGLB_085_01300 [Arthrobacter globiformis NBRC
12137]
gi|359304266|dbj|GAB15447.1| hypothetical protein ARGLB_085_01300 [Arthrobacter globiformis NBRC
12137]
Length = 241
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ +I G+NL ++D + + EK+ K + V+ VD ++S G ++ EV
Sbjct: 1 MEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEV 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR--LKVR 215
T+ + V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 TVLGRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATATL 117
Query: 216 EPVTQ----VVENDADVQSEEED--------DNFV----DEVIVRMKFFEMPPLTVSEAI 259
EP + VE ++Q+ E +N + V++R K F LT+ +A+
Sbjct: 118 EPASSNQPIYVEASNNIQAAPEPAEKSPYDVENDIPAGDSPVLIRRKVFPAASLTLDDAV 177
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ +E + HDFY F ++ T ++VY+R+ YGVI
Sbjct: 178 DNMELIGHDFYLFVDKATNAPSVVYRRRGWTYGVI 212
>gi|326804107|ref|YP_004321925.1| ribosomal subunit interface protein [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650373|gb|AEA00556.1| ribosomal subunit interface protein [Aerococcus urinae
ACS-120-V-Col10a]
Length = 189
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 107/192 (55%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++++ E K+ K + K+ + V ++ + + G+ + EVT+
Sbjct: 6 VRGENIEITPAIRDYAENKISK-IEKYFKDAPDTTVYVNAKVYQNGEA----KAEVTVPL 60
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ +RAEE ++ +Y SIDLV ++R+++K K + + R KG + +
Sbjct: 61 PRL-TLRAEETSQDLYGSIDLVVDKLERQVKKYKTRINRKSRE-KGISDV-------MFT 111
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
EN+ Q + +DDN + IVR K + P++ EA+ Q+E + H F+ + + E+ +++
Sbjct: 112 ENN---QEDSKDDNDSNIEIVRTKSIAVKPMSAEEAVLQMEMLGHSFFIYEDAESESVSL 168
Query: 283 VYKRKAGGYGVI 294
VYKR G YG+I
Sbjct: 169 VYKRHNGKYGLI 180
>gi|254439903|ref|ZP_05053397.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Octadecabacter antarcticus 307]
gi|198255349|gb|EDY79663.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Octadecabacter antarcticus 307]
Length = 191
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 103/203 (50%), Gaps = 13/203 (6%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I GK +++ + ++ HV+ ++G+ K++ + ++ S G EF CE
Sbjct: 1 MRYQITGKQIDIGEALQTHVQTEMGEVFSKYAGRPTDANIVFSKSGHEF-------VCEA 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+ +A+ +YA+ D S ++++LR+ K + DH H +++ +
Sbjct: 54 EVHLSTGLTAQAKGKGTEIYAAFDGASEKMEKQLRRYKRRLKDH--HRDRSQPVELSDAG 111
Query: 219 TQVVE-NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ ++ ND +SE+++ N V +IV ++P ++V EA+ Q+E D FRNE
Sbjct: 112 SYILASND---ESEDQEPNGVSSMIVAEMETKIPSISVGEAVMQMEIADAPVLVFRNERH 168
Query: 278 GEINIVYKRKAGGYGVIIPKGNG 300
IN+VY+R+ G G I P+ G
Sbjct: 169 SGINVVYRREDGNIGWIDPRNTG 191
>gi|395242685|ref|ZP_10419681.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus pasteurii CRBIP 24.76]
gi|394479933|emb|CCI85921.1| Putative phosphate starvation inducible protein stressrelated
[Lactobacillus pasteurii CRBIP 24.76]
Length = 181
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 105/198 (53%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+TD ++++V++++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTDALRSYVDKRL-KKLEKYFELSQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGIQDFFVET 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
P EE+ D IVR K + P+ EAI Q++ + HDF+ F++ E
Sbjct: 113 PA-----------EEEKKPGEFD--IVRNKRVSLKPMEPEEAILQMDMLGHDFFVFQDAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 160 TNGTSVVYRRNDGRYGLI 177
>gi|209559755|ref|YP_002286227.1| ribosomal subunit Interface protein [Streptococcus pyogenes NZ131]
gi|209540956|gb|ACI61532.1| Ribosomal subunit interface protein [Streptococcus pyogenes NZ131]
Length = 182
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 105/196 (53%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ + +Y SI LV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSXDMYGSIXLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV + + EE D + +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFTTEFEA---EEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEBG 163
Query: 279 EINIVYKRKAGGYGVI 294
NI+Y+R+ G G+I
Sbjct: 164 ATNILYRREDGNLGLI 179
>gi|134300910|ref|YP_001114406.1| sigma 54 modulation protein/ribosomal protein S30EA
[Desulfotomaculum reducens MI-1]
gi|134053610|gb|ABO51581.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Desulfotomaculum reducens MI-1]
Length = 173
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 106/199 (53%), Gaps = 27/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ ++GKN+++T ++++VE+++GK + + + E L V G + EV
Sbjct: 1 MKVQVRGKNIQVTPALRDYVEKRLGK-LDRFLENMGEAIATLVVEG-------ETHKIEV 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++R EE E +Y+++D V ++R++ + K K + R +G L V
Sbjct: 53 TIPINGM-ILRGEEATEEMYSAVDNVVEKMERQIERYKGK--INRRDNRGIADLGV---- 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
VVE+ D + +++ K F + P+ + EAI Q+ + HDF+ F N ET
Sbjct: 106 --VVEDMEDETPQ----------VIKTKRFAIKPMALDEAIMQMNLLGHDFFVFSNAETE 153
Query: 279 EINIVYKRKAGGYGVIIPK 297
+ N++YKRK G YG+I P+
Sbjct: 154 QTNVIYKRKDGNYGLIEPE 172
>gi|25027329|ref|NP_737383.1| hypothetical protein CE0773 [Corynebacterium efficiens YS-314]
gi|23492610|dbj|BAC17583.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 235
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 41/216 (18%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC------ 156
I G+N+E V H E+V K + K + +D L+ E P RR
Sbjct: 29 ITGRNVE----VPEHFAERVHKKLAK----IERLDPTLTFFHVELQHEPNPRRADESNRI 80
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
++T K H + RAE ++ YA+++ + ++R LRK+K + S +R R
Sbjct: 81 QITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRS--------ISRSGHRA 131
Query: 217 PVT------QVVEND-----ADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEA 258
P++ Q+V AD + + D + D+V IVR K P++V +A
Sbjct: 132 PLSTGEVGAQLVAESQEARGADDLGKYDVDPYADKVDDVVPGQIVRTKEHPATPMSVDDA 191
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F NEET + ++VY+R A YG+I
Sbjct: 192 LSEMELVGHDFYLFINEETQQPSVVYRRHAFDYGLI 227
>gi|452973510|gb|EME73332.1| hypothetical protein BSONL12_16449 [Bacillus sonorensis L12]
Length = 186
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 20/197 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ HVE+K+GK + +VD + V + + EVT+
Sbjct: 5 VRGENIEVTAALREHVEKKIGKL---GRYFENDVDAIVQVNLKFYNDQES--KVEVTIPM 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVT 219
+ RAE E +Y +IDL ++ ++R++RK K K NR K RE P
Sbjct: 60 IDLSL-RAEVHHEDMYNAIDLAATKLERQIRKHKTK----------VNR-KFREKGSPKH 107
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
E + + +E+ + +VR K F + P+ EAI Q+ + HDF+ F N ET
Sbjct: 108 LFAEGNGIGTAVQEETDEEQPQVVRQKRFNLKPMDNEEAILQMNMLGHDFFVFTNAETNL 167
Query: 280 INIVYKRKAGGYGVIIP 296
N+VY+R G YG+I P
Sbjct: 168 TNVVYRRNDGKYGLIEP 184
>gi|357239237|ref|ZP_09126572.1| ribosomal subunit interface protein [Streptococcus ictaluri 707-05]
gi|356751806|gb|EHI68936.1| ribosomal subunit interface protein [Streptococcus ictaluri 707-05]
Length = 182
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 109/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKSAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ ++ +Y SIDLV I+R++RK K K + R ++ E
Sbjct: 57 TI-PLGSVMLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKISTGQVFTTEFE 115
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ VE +V+ +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 116 AEQVEEIPEVK------------VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
E NI+Y+R+ G G+I K
Sbjct: 164 ETNILYRREDGDLGLIEAK 182
>gi|260906855|ref|ZP_05915177.1| sigma 54 modulation protein/ribosomal protein S30EA [Brevibacterium
linens BL2]
Length = 219
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 107/212 (50%), Gaps = 20/212 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI-RRCE 157
+ +++ G+ L ++D+ + H+E+K+ K R V + V + + P R E
Sbjct: 1 MDIVVNGRQLTISDSFRAHIEDKIAKV---EQLAPRAQRVEVHVAHEKNSRQPETSERVE 57
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES--DHGRHMK-----GFN 210
+T+ K + RAE A YA++DL + + +LR+ +++ G H K
Sbjct: 58 LTVVAKGPAI-RAEAMASDKYAALDLAWAKLVERLRRARDRNKVPRAGHHRKESTAEALA 116
Query: 211 RLKVREPVT----QVVENDADVQSEEEDDNFVDE----VIVRMKFFEMPPLTVSEAIEQL 262
++ V + + + ++ +A +++ + E V++R K F P+ + EA+ ++
Sbjct: 117 KMPVADSLVPEEGEAIDANASANNDQTNGRIKAEGDSPVVLREKTFNGSPIGIEEALNRM 176
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E V HDFY F +EE+ + ++VY+RK YGVI
Sbjct: 177 ELVGHDFYLFIDEESSKPSVVYRRKGWSYGVI 208
>gi|422883555|ref|ZP_16930004.1| ribosomal subunit interface protein, partial [Streptococcus
sanguinis SK49]
gi|332362999|gb|EGJ40788.1| ribosomal subunit interface protein [Streptococcus sanguinis SK49]
Length = 179
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ + ++EE V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE-----VPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDS 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 STNVIYRREDGDIGLL 177
>gi|444305049|ref|ZP_21140836.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Arthrobacter sp. SJCon]
gi|443482584|gb|ELT45492.1| sigma 54 modulation protein/30S ribosomal protein S30EA
[Arthrobacter sp. SJCon]
Length = 247
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
+I G+NL ++D + + EK+ K + V+ VD ++S G ++ EVT+
Sbjct: 1 MISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEVTVL 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR--------L 212
+ V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 GRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATATLEPA 117
Query: 213 KVREP--VTQVVENDADVQSEEEDDNFVDE--------VIVRMKFFEMPPLTVSEAIEQL 262
EP V NDA ++ VD V++R K F L++ +A++ +
Sbjct: 118 SAHEPLYVEASHRNDAAAAPADKSPYDVDNDIPAGDSPVLIRRKVFPAASLSLDDAVDNM 177
Query: 263 ENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
E V HDFY F ++ T ++VY+R+ YGVI
Sbjct: 178 ELVGHDFYLFVDKATNTPSVVYRRRGWTYGVI 209
>gi|325849496|ref|ZP_08170777.1| ribosomal subunit interface protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480116|gb|EGC83191.1| ribosomal subunit interface protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 176
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL I+GKN+ + +++K +EK + + K+ + E+D++ S G ++ E
Sbjct: 1 MKLNIKGKNINVYESLKEEAKEKFDR-LDKYFNKEEEMDLKFSTEGN-------FKKVES 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-----HMKGFNRLK 213
T+F K ++RAEE E ID V + R++RK K K + R + F+++
Sbjct: 53 TIFLKGGTILRAEEVNEDFSTGIDKVIDALVRQIRKQKTKLQRNRRSGESIKFESFDKI- 111
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
D + EE D +I R K + P++ EA Q+E ++HDF+ +
Sbjct: 112 -------------DEEKEE------DPIIKREKEILLRPMSDEEACMQMELLNHDFFLYL 152
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
+++ + +VYKRK G YG+IIP
Sbjct: 153 DDQDMKTRLVYKRKDGHYGLIIP 175
>gi|302521431|ref|ZP_07273773.1| ribosomal subunit interface protein [Streptomyces sp. SPB78]
gi|302430326|gb|EFL02142.1| ribosomal subunit interface protein [Streptomyces sp. SPB78]
Length = 246
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 11 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 69
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 70 ITLRSRG-PVIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGSERLTAAEV 124
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFV-------------DEVIVRMKFFEMPPLTVSEA 258
P T + D + E E D V ++VR K P+++ +A
Sbjct: 125 AERVPGTAGLNEDGSFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 184
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 185 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 220
>gi|146318094|ref|YP_001197806.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis 05ZYH33]
gi|146320273|ref|YP_001199984.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis 98HAH33]
gi|386577393|ref|YP_006073798.1| Sigma 54 modulation protein [Streptococcus suis GZ1]
gi|145688900|gb|ABP89406.1| Ribosome-associated protein Y (PSrp-1) [Streptococcus suis 05ZYH33]
gi|145691079|gb|ABP91584.1| Ribosome-associated protein Y (PSrp-1) [Streptococcus suis 98HAH33]
gi|292557855|gb|ADE30856.1| Sigma 54 modulation protein [Streptococcus suis GZ1]
Length = 192
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 14 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 66
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 67 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 116
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
QV ++ Q+ EE +VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 117 ATGQVFTDELVEQTGEEVK------VVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAN 170
Query: 277 TGEINIVYKRKAGGYGVI 294
G N++Y+R+ G G++
Sbjct: 171 DGTTNVLYRREDGDLGLL 188
>gi|339634881|ref|YP_004726522.1| ribosome-associated protein Y (PSrp-1) [Weissella koreensis KACC
15510]
gi|420160880|ref|ZP_14667651.1| ribosome-associated inhibitor protein Y [Weissella koreensis KCTC
3621]
gi|338854677|gb|AEJ23843.1| ribosome-associated protein Y (PSrp-1) [Weissella koreensis KACC
15510]
gi|394745630|gb|EJF34448.1| ribosome-associated inhibitor protein Y [Weissella koreensis KCTC
3621]
Length = 187
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 110/199 (55%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA---VLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
++ I++G+N+E+T+ +K +V +++ + + + V V++R R +
Sbjct: 2 LEFIVRGENIEVTEAIKAYVIKRLTRLERYLNDDNKYVAHVNLR--------SYQERTFK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + ++RAE+ + +Y SID VS ++R++RK K K + R KG+ +
Sbjct: 54 IEVTI-QLPYLLLRAEDTQDDLYQSIDFVSDKLERQIRKYKTKVNRKSRE-KGYKGID-- 109
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
T + E+ + Q EEE+D + IVR K + P+ V EAI Q++ + H+F+ F++
Sbjct: 110 ---TFMNESLDEPQLEEEEDAQFE--IVRTKHLSLKPMDVEEAILQMDLLGHNFFVFQDA 164
Query: 276 ETGEINIVYKRKAGGYGVI 294
E+ +VYKRK G Y +I
Sbjct: 165 ESDLPAVVYKRKDGKYALI 183
>gi|315653888|ref|ZP_07906804.1| ribosomal subunit interface protein [Lactobacillus iners ATCC
55195]
gi|349611784|ref|ZP_08891014.1| hypothetical protein HMPREF1027_00441 [Lactobacillus sp. 7_1_47FAA]
gi|315488584|gb|EFU78230.1| ribosomal subunit interface protein [Lactobacillus iners ATCC
55195]
gi|348608249|gb|EGY58234.1| hypothetical protein HMPREF1027_00441 [Lactobacillus sp. 7_1_47FAA]
Length = 185
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD +K++VE EK+ K S ++ V++++ + +
Sbjct: 2 LKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVY--------SEKSSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E + D DV S ++ V IVR K + P+ EAI Q+ + H+F+ F +
Sbjct: 102 ERGMRDFFYDTDVASVATEEKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFED 161
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T +IVY+R G YG+I
Sbjct: 162 ADTNGTSIVYRRNDGRYGLI 181
>gi|313888609|ref|ZP_07822274.1| ribosomal subunit interface protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845338|gb|EFR32734.1| ribosomal subunit interface protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 175
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 23/190 (12%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN+ELT+++K E+K + + EV+ R+ F + E T+F K
Sbjct: 7 GKNIELTESLKEIAEKKFSRL---DKYFSEEVETRIV-----FSTIKDEQTVEATIFLPK 58
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE + +Y+S+D + R++RK K RLK R + +
Sbjct: 59 -TIIRAEETTDDMYSSMDNAVDALARQIRKHK-------------TRLKRRYQNNETIRF 104
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
D + E D + IV+ K FE+ P+ EAI Q++ ++H+F+ F + +T ++IVY
Sbjct: 105 DELMDKEAAKDE-PEHKIVKRKNFELNPMNEEEAILQMDLLNHNFFVFLDGDTDGVSIVY 163
Query: 285 KRKAGGYGVI 294
KRK G YG I
Sbjct: 164 KRKDGNYGKI 173
>gi|163840383|ref|YP_001624788.1| ribosome-associated factor Y [Renibacterium salmoninarum ATCC
33209]
gi|162953859|gb|ABY23374.1| ribosome-associated factor Y [Renibacterium salmoninarum ATCC
33209]
Length = 267
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 34/222 (15%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKH-SHLVREVDVRLSVRGGEFGKGPRIR-- 154
+++ +I G+NL ++D + + EK+ K L+H + V+ VD ++S K P R
Sbjct: 25 TMEFMISGRNLTVSDRFREYATEKISK--LEHLTEKVQRVDAKVS-------KQPNARLA 75
Query: 155 --RCEVTLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHM-KGF 209
+ V L + G V+RAE A +A+ D+ + + +LR+ K+K+ HGRH K
Sbjct: 76 DTKLTVELTVQGRGPVIRAEAHAGDKFAAFDVAYNKLLERLRRAKDKKKLHHGRHTPKAV 135
Query: 210 NRLKVR-EPV---------TQV-VENDADVQS----EEEDDNFVDE--VIVRMKFFEMPP 252
+ EPV T+V VE +A Q+ E E+D + V++R K F
Sbjct: 136 SEATASLEPVGTGPITLLNTEVSVEAEAAKQTASPYEIENDIPAGDSPVLIRRKVFPAAA 195
Query: 253 LTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ V +A++ +E V HDFY F + T ++VY+R+ YGVI
Sbjct: 196 MGVDDAVDNMELVGHDFYLFIDSVTNAPSVVYRRRGWTYGVI 237
>gi|119962856|ref|YP_948408.1| ribosomal subunit interface protein [Arthrobacter aurescens TC1]
gi|119949715|gb|ABM08626.1| putative ribosomal subunit interface protein [Arthrobacter
aurescens TC1]
Length = 253
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 28/219 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+++ +I G+NL ++D + + EK+ K + V+ VD ++S PR E
Sbjct: 11 TMEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKE-----TNPRQTPGE 64
Query: 158 VTLFTKKHG---VVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR-- 211
+T+ G V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 65 LTVEVTVLGRGPVIRAEATAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREA 124
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDE----------------VIVRMKFFEMPPLTV 255
EP + + + +E VDE V++R K F LT+
Sbjct: 125 TATLEPASASEPLYVEASNHQESAPPVDERSPYDIENDIPAGDSPVLIRRKVFPAASLTL 184
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A++ +E V H+FY F ++ET ++VY+R YGVI
Sbjct: 185 DDAVDNMELVGHNFYLFLDKETNAPSVVYRRSGWTYGVI 223
>gi|145356942|ref|XP_001422682.1| Plastid-specific ribosomal protein 1 [Ostreococcus lucimarinus
CCE9901]
gi|144582925|gb|ABP00999.1| Plastid-specific ribosomal protein 1 [Ostreococcus lucimarinus
CCE9901]
Length = 132
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHL----VREVDVRLSVRGGEFGKGPRIRRC 156
+++QG +LE+T + + K+GKA SH+ +REVDVR S RGGE +G +
Sbjct: 1 MLVQGLHLEITPAIDEYCRAKIGKAC---SHVDPREIREVDVRCSARGGEDSRGGHEHKT 57
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG-RH 205
EVT+ + + A+ E +YA+ID + I+ R +RK KEK S G RH
Sbjct: 58 EVTVLMTRGTTLHADGTGENLYATIDSCADIVTRAIRKHKEKHSGKGSRH 107
>gi|385260413|ref|ZP_10038559.1| ribosomal subunit interface protein [Streptococcus sp. SK140]
gi|385191257|gb|EIF38673.1| ribosomal subunit interface protein [Streptococcus sp. SK140]
Length = 180
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTKIERKNR-----NKVSTSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T V+ D DV + +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 TDVLVEDLDVSQPK---------VVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDE 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGDIGLL 177
>gi|385261844|ref|ZP_10039961.1| ribosomal subunit interface protein [Streptococcus sp. SK643]
gi|385192566|gb|EIF39971.1| ribosomal subunit interface protein [Streptococcus sp. SK643]
Length = 182
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 110/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQAEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIDRQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ F + E
Sbjct: 106 TSQLFTDALV----EDSNVVQSRVVRSKQIDLKPMDLEEAILQMDLLGHDFFIFVDVEDH 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|330718319|ref|ZP_08312919.1| SSU ribosomal protein S30P / sigma 54 modulation protein
[Leuconostoc fallax KCTC 3537]
Length = 182
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 107/192 (55%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++ +V +++ K + ++ + +++R K ++ EVT+
Sbjct: 6 VRGENIEVTEAIREYVIKRLNKL---NRYIEEDAVANVNLRTYNSNKSGKV---EVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D V ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTHADLYAAVDNVGEKLERQIRKYKTK----------INR-KSRETGYKGI 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ + +EE DD ++ IVR K + P+ EA Q++ + HDF+ F + ET +N+
Sbjct: 108 DSRNEFDTEETDDEALE--IVRTKSVGLKPMNSEEAALQMDLLGHDFFIFEDSETQSVNV 165
Query: 283 VYKRKAGGYGVI 294
+YKR+ G YG++
Sbjct: 166 IYKRRDGRYGLL 177
>gi|323350289|ref|ZP_08085954.1| ribosomal subunit interface protein [Streptococcus sanguinis VMC66]
gi|401681021|ref|ZP_10812927.1| ribosomal subunit interface protein [Streptococcus sp. AS14]
gi|422820641|ref|ZP_16868834.1| ribosomal subunit interface protein [Streptococcus sanguinis SK353]
gi|422851017|ref|ZP_16897687.1| ribosomal subunit interface protein [Streptococcus sanguinis SK150]
gi|322123474|gb|EFX95145.1| ribosomal subunit interface protein [Streptococcus sanguinis VMC66]
gi|324991783|gb|EGC23715.1| ribosomal subunit interface protein [Streptococcus sanguinis SK353]
gi|325695235|gb|EGD37136.1| ribosomal subunit interface protein [Streptococcus sanguinis SK150]
gi|400187815|gb|EJO22007.1| ribosomal subunit interface protein [Streptococcus sp. AS14]
Length = 180
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ + ++EE + +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE-----IPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDS 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 STNVIYRREDGDIGLL 177
>gi|224543027|ref|ZP_03683566.1| hypothetical protein CATMIT_02221 [Catenibacterium mitsuokai DSM
15897]
gi|224524052|gb|EEF93157.1| ribosomal subunit interface protein [Catenibacterium mitsuokai DSM
15897]
Length = 193
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 113/197 (57%), Gaps = 24/197 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVL-KHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+K+I++GKN+ +TD +++ + +K+ A+L K+ + ++V+ ++ +R FG ++ E
Sbjct: 16 MKVIVRGKNVTITDAIEDKITKKL--ALLDKYFIMGQDVEAKVLIRTYPFG-----QKIE 68
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
VT+ T+ + ++RAEE ++ +Y +IDLV ++R++RK K K S ++ K + E
Sbjct: 69 VTIPTE-YVLLRAEETSDDLYEAIDLVIDKLERQIRKYKTKLSRKSKNNKLAFNINTLEA 127
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ + E D V++ K P+ + EAI Q+E + H F+ +++ ET
Sbjct: 128 LEEPEEEDVVVKT---------------KTINPKPMDMEEAIMQMELIGHSFFVYKDIET 172
Query: 278 GEINIVYKRKAGGYGVI 294
+VYKR+ GGYG++
Sbjct: 173 NTACVVYKRRDGGYGLL 189
>gi|422824683|ref|ZP_16872868.1| ribosomal subunit interface protein [Streptococcus sanguinis SK405]
gi|422872084|ref|ZP_16918577.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1087]
gi|324991963|gb|EGC23885.1| ribosomal subunit interface protein [Streptococcus sanguinis SK405]
gi|328945018|gb|EGG39174.1| ribosomal subunit interface protein [Streptococcus sanguinis
SK1087]
Length = 180
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+TD ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 LKYSIRGENLEVTDALRDYVVSKLEK-IEKYFQAEQELDARVNLKIYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNRNKV--AT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ + ++EE + +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 107 SQLFTDSFAEEAEE-----IPSKVVRSKHIDLKPMDLEEAILQMDLLGHDFFIYSDAEDS 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 STNVIYRREDGDIGLL 177
>gi|399523646|ref|ZP_10764260.1| ribosomal subunit interface protein [Atopobium sp. ICM58]
gi|398375340|gb|EJN52757.1| ribosomal subunit interface protein [Atopobium sp. ICM58]
Length = 215
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + R VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFRAYVEEKVSKITQFYPRAQR-VDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
R E+T++ K ++RAE + YA++D+ + + +LR+++++ DH R + R V
Sbjct: 55 RIELTVYGKG-PIIRAEAQSADRYAAVDIAAGKLYERLRRLRDRVKDHRRR---YPRDLV 110
Query: 215 REPVTQVVE-------------------NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTV 255
+ +V D V E+ +IVR K E PP++V
Sbjct: 111 EAEILEVTPVVEEVAEPEPEAPKPLSSAGDLKVGEAREEQWGDTPIIVRQKVHEAPPMSV 170
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
EA++Q+ V H F+ F ++ET + +VY R YGV+
Sbjct: 171 DEALDQMMMVGHPFFLFVDKETNQPCVVYHRHGWTYGVL 209
>gi|403527886|ref|YP_006662773.1| ribosomal subunit interface protein [Arthrobacter sp. Rue61a]
gi|403230313|gb|AFR29735.1| putative ribosomal subunit interface protein [Arthrobacter sp.
Rue61a]
Length = 246
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 28/219 (12%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+++ +I G+NL ++D + + EK+ K + V+ VD ++S PR E
Sbjct: 4 TMEFMISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKE-----TNPRQTPGE 57
Query: 158 VTLFTKKHG---VVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR-- 211
+T+ G V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 58 LTVEVTVLGRGPVIRAEATAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREA 117
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDE----------------VIVRMKFFEMPPLTV 255
EP + + + +E VDE V++R K F LT+
Sbjct: 118 TATLEPASASEPLYVEASNHQESAPPVDERSPYDIENDIPAGDSPVLIRRKVFPAASLTL 177
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A++ +E V H+FY F ++ET ++VY+R YGVI
Sbjct: 178 DDAVDNMELVGHNFYLFLDKETNAPSVVYRRSGWTYGVI 216
>gi|318056753|ref|ZP_07975476.1| hypothetical protein SSA3_02349 [Streptomyces sp. SA3_actG]
gi|318078615|ref|ZP_07985947.1| hypothetical protein SSA3_18356 [Streptomyces sp. SA3_actF]
Length = 238
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 3 IDIVVKGRKTEVPERFRKHVAEKLNVEKIQKLDGKVMSLDVEVS-KEHNPRQADRCDRVE 61
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + ++RK E D R +G RL E
Sbjct: 62 ITLRSRG-PVIRAEACAADPYAALDLAVAKLAARMRK----EHDKRRTRRGSERLTAAEV 116
Query: 217 ----PVTQVVENDAD-VQSEEEDDNFV-------------DEVIVRMKFFEMPPLTVSEA 258
P T + D + E E D V ++VR K P+++ +A
Sbjct: 117 AERVPGTAGLNEDGSFAEPEPESDGGVPTKKVGSLEVQGDGPLVVREKTHLAAPMSLDQA 176
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 177 LYEMELVGHDFYLFVDAETKEPSVVYRRHAYDYGVI 212
>gi|300779610|ref|ZP_07089466.1| ribosome-associated inhibitor protein Y [Corynebacterium genitalium
ATCC 33030]
gi|300533720|gb|EFK54779.1| ribosome-associated inhibitor protein Y [Corynebacterium genitalium
ATCC 33030]
Length = 224
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 29/214 (13%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-- 155
+ ++ I G+N+E V H +E+V + K + ++D L+ E P RR
Sbjct: 15 NAQVTITGRNVE----VPEHFQERVNTKLAK----IEKLDPTLNFFHVELKHEPNPRREA 66
Query: 156 ----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
++T K H + RAE ++ YA+++ ++R LRK+K + M G
Sbjct: 67 QANRIQITATGKGH-LARAEAKEDSFYAALESAIGKMERSLRKVKVRREIS---MGGHRA 122
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEV-----------IVRMKFFEMPPLTVSEAIE 260
K VT + +A+ +E+DD + D+ +VR K P++V EA+
Sbjct: 123 PKSTYEVTSELVAEAEQARQEQDDRYADKYAESINENLPGQVVRTKEHPATPMSVDEALS 182
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F N+E ++VY+R A YG+I
Sbjct: 183 EMELVGHDFYLFINDENQRPSVVYRRHAYDYGLI 216
>gi|340360674|ref|ZP_08683141.1| S30AE family protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339883135|gb|EGQ73003.1| S30AE family protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 221
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 27/215 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + G+N E++ ++++VEEK K V + V+ V+V ++ + PR
Sbjct: 1 MDITVVGRNAEISSRLRDYVEEKAAK-VEQLDPRVQRVEVEVT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
R E+T+ +K ++RAE + +A+ D+ + +LR+ ++++ DH R++ + +
Sbjct: 55 RAEITVVSKG-PIIRAEASSSDRFAAFDIAMGKLTERLRRARDRKKDHRRYIVEVAKDR- 112
Query: 215 REPVTQ---VVENDADVQSEEE-----------DDNFVDE-VIVRMKFFEMPPLTVSEAI 259
R P + VV + D E+ + D VIVR K + P+ V EA+
Sbjct: 113 RSPAAEEAIVVPDTGDAPIEDSPTAPTEPGVAVESQLGDSPVIVRQKLHDAVPMAVDEAL 172
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
Q+E V H FY F + TG+ VY R YGVI
Sbjct: 173 YQMELVGHPFYLFIEKSTGQPCAVYHRHGWTYGVI 207
>gi|335029753|ref|ZP_08523258.1| ribosomal subunit interface protein [Streptococcus infantis SK1076]
gi|417938721|ref|ZP_12582015.1| ribosomal subunit interface protein [Streptococcus infantis SK970]
gi|334268277|gb|EGL86719.1| ribosomal subunit interface protein [Streptococcus infantis SK1076]
gi|343390736|gb|EGV03315.1| ribosomal subunit interface protein [Streptococcus infantis SK970]
Length = 182
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 109/199 (54%), Gaps = 20/199 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K R N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNR-----NKVSTSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + D+DV + +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 111 TDALVEDSDVAQAK---------VVRSKHIDLKPMDLEEALLQMDLLGHDFFIYIDVEDE 161
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G G++ K
Sbjct: 162 TTNVIYRREDGDIGLLEAK 180
>gi|300814123|ref|ZP_07094406.1| ribosomal subunit interface protein [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511780|gb|EFK38997.1| ribosomal subunit interface protein [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 176
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164
GKN++L + +K+ ++K K + EV R F K ++ EVT+F
Sbjct: 7 GKNIDLKEGLKDQAQKKFSKL---DKYFAEEVQAR-----AVFSKQKNGQKVEVTIFLP- 57
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
++RAEE ++ ++ SID ++R++RK K RLK R + +
Sbjct: 58 GTILRAEETSQDMFVSIDKTVDKLERQVRKYK-------------TRLKKRYQNNETIRF 104
Query: 225 D----ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
D Q EE+ D I + K F + P+ EAI Q+E ++H+F+ F+N E +I
Sbjct: 105 DNFDKEPAQKEEDKD------IKKRKTFTLRPMHEDEAILQMELLNHNFFIFKNAENDKI 158
Query: 281 NIVYKRKAGGYGVI 294
+ YKR G YG+I
Sbjct: 159 EVSYKRSDGDYGII 172
>gi|227510663|ref|ZP_03940712.1| ribosome-associated inhibitor protein Y [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513678|ref|ZP_03943727.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
ATCC 11577]
gi|227524823|ref|ZP_03954872.1| ribosome-associated inhibitor protein Y [Lactobacillus hilgardii
ATCC 8290]
gi|227083089|gb|EEI18401.1| ribosome-associated inhibitor protein Y [Lactobacillus buchneri
ATCC 11577]
gi|227088038|gb|EEI23350.1| ribosome-associated inhibitor protein Y [Lactobacillus hilgardii
ATCC 8290]
gi|227190315|gb|EEI70382.1| ribosome-associated inhibitor protein Y [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 194
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA-VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
I+G+N+E+T ++++VE++V K + V L V + K EVT+
Sbjct: 13 IRGENIEVTQAIRDYVEKRVSKLEKYFEKDMKNTAHVNLRVYPDKQAK------VEVTI- 65
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
+RAEE + +YAS+DLV+ ++R++RK K K + R KGF L+ Q
Sbjct: 66 PLPFLTLRAEELSNDLYASVDLVTDKLERQIRKYKTKVNRKSRE-KGFKNLEFVPNDDQT 124
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ D QS+ + +VR K + P+ EAI Q++ + HDF+ + + +T I+
Sbjct: 125 TSDSDDNQSQFD--------VVRTKRLALKPMDNEEAILQMDMLGHDFFIYEDADTSNID 176
Query: 282 IVYKRKAGGYGVI 294
IVY+R G YG+I
Sbjct: 177 IVYRRNDGRYGLI 189
>gi|300173965|ref|YP_003773131.1| ribosome-associated factor Y [Leuconostoc gasicomitatum LMG 18811]
gi|333445851|ref|ZP_08480793.1| ribosome-associated factor Y [Leuconostoc inhae KCTC 3774]
gi|299888344|emb|CBL92312.1| Ribosome-associated factor Y [Leuconostoc gasicomitatum LMG 18811]
Length = 182
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 110/192 (57%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALREYVEKRLTKL---NRYIEEKSSANVNLRTY---KSDNSGKVEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+++ ++ + E DD+ + IVR K ++ P++ EA Q++ ++H F+ F++ ET ++
Sbjct: 108 DSNDEIPASEVDDDALQ--IVRTKQVDLKPMSPEEAALQMDLLEHSFFIFKDAETNTDSV 165
Query: 283 VYKRKAGGYGVI 294
+YKR+ G YG++
Sbjct: 166 IYKRQDGKYGLL 177
>gi|404496144|ref|YP_006720250.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Geobacter metallireducens GS-15]
gi|78193753|gb|ABB31520.1| ribosomal subunit interface-associated sigma-54 modulation protein
RaiA [Geobacter metallireducens GS-15]
Length = 181
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 16/143 (11%)
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVTL T K ++A E+ +YA+ID V I+R+LR+ KE RLK
Sbjct: 50 AEVTL-TAKGVTIKAAEETNDMYAAIDAVVDKIERQLRRYKE-------------RLKNH 95
Query: 216 EPVT--QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+P + +E + + E D + VIVR K + P++V EA+ Q++ + DF F
Sbjct: 96 KPAVDNRALEVQKTILTAESIDQQQEPVIVRSKTITIKPMSVEEAVMQMDLLHKDFLVFT 155
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
+ T IN+VY+RK G YG+I P
Sbjct: 156 DSTTEVINVVYRRKDGNYGLIEP 178
>gi|312864930|ref|ZP_07725160.1| ribosomal subunit interface protein [Streptococcus downei F0415]
gi|311099550|gb|EFQ57764.1| ribosomal subunit interface protein [Streptococcus downei F0415]
Length = 182
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 109/196 (55%), Gaps = 18/196 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++++VE K+ K + K+ + +E++ +++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRSYVESKLAK-IEKYFNPAQELNAKVNLKVYR----KKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLVS I+R++RK K K + R ++ E
Sbjct: 57 TIPVDSI-TLRAEDVSQDLYGSIDLVSDKIERQIRKNKTKIAKKHRE-----KVATGEVF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + ++ E IVR K ++ P+ EAI Q++ + HDF+ + + E G
Sbjct: 111 SAEFVAEEVEEAPEPK-------IVRTKNVDLKPMDAEEAILQMDLLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G +G+I
Sbjct: 164 TTNVIYRREDGDFGLI 179
>gi|357413095|ref|YP_004924831.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptomyces
flavogriseus ATCC 33331]
gi|320010464|gb|ADW05314.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptomyces
flavogriseus ATCC 33331]
Length = 248
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 32/230 (13%)
Query: 87 PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGG 145
P + S G V ++++G+ E+ + + HV EK+ + K V +DV +S +
Sbjct: 8 PSKRSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLDKIQKFDGKVISLDVEVS-KEP 66
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
+ R R E+TL ++ V+RAE A YA++DL + + +LRK E D
Sbjct: 67 NPRQADRAARVEITLRSRGP-VIRAEAAAGDPYAALDLATDKLDARLRK----EHDKRYS 121
Query: 206 MKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDE---------------------VIVR 244
+G RL E V +VV A D + E ++VR
Sbjct: 122 RRGNGRLSASE-VAEVVPGAASFNG---DGELIPEETTPSVPTTRIGSLEVQGEGPLVVR 177
Query: 245 MKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
K P+T+ +A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 178 EKTHVAAPMTLDQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 227
>gi|259501052|ref|ZP_05743954.1| ribosomal subunit interface protein [Lactobacillus iners DSM 13335]
gi|302190499|ref|ZP_07266753.1| ribosome-associated protein Y [Lactobacillus iners AB-1]
gi|309803084|ref|ZP_07697183.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
11V1-d]
gi|309808693|ref|ZP_07702583.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
01V1-a]
gi|309810018|ref|ZP_07703865.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
2503V10-D]
gi|312870686|ref|ZP_07730794.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
3008A-a]
gi|312872612|ref|ZP_07732680.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2062A-h1]
gi|312874362|ref|ZP_07734393.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2052A-d]
gi|312874720|ref|ZP_07734739.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2053A-b]
gi|325911467|ref|ZP_08173879.1| ribosomal subunit interface protein [Lactobacillus iners UPII
143-D]
gi|325913182|ref|ZP_08175552.1| ribosomal subunit interface protein [Lactobacillus iners UPII 60-B]
gi|329920467|ref|ZP_08277199.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
1401G]
gi|259167746|gb|EEW52241.1| ribosomal subunit interface protein [Lactobacillus iners DSM 13335]
gi|308164865|gb|EFO67113.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
11V1-d]
gi|308168054|gb|EFO70182.1| ribosomal subunit interface protein [Lactobacillus iners LactinV
01V1-a]
gi|308169658|gb|EFO71704.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
2503V10-D]
gi|311089465|gb|EFQ47890.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2053A-b]
gi|311090128|gb|EFQ48541.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2052A-d]
gi|311091974|gb|EFQ50350.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
2062A-h1]
gi|311093797|gb|EFQ52133.1| ribosomal subunit interface protein [Lactobacillus iners LEAF
3008A-a]
gi|325476817|gb|EGC79971.1| ribosomal subunit interface protein [Lactobacillus iners UPII
143-D]
gi|325477603|gb|EGC80745.1| ribosomal subunit interface protein [Lactobacillus iners UPII 60-B]
gi|328936143|gb|EGG32596.1| ribosomal subunit interface protein [Lactobacillus iners SPIN
1401G]
Length = 185
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD +K++VE EK+ K S ++ V++++ + +
Sbjct: 2 LKYNVRGENIEVTDALKSYVEKRLEKLEKYFEIESDVIAHVNLKVY--------SEKSSK 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + NR K R
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTR----------INR-KSR 101
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEV-IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E + D DV S ++ V IVR K + P+ EAI Q+ + H+F+ F +
Sbjct: 102 ERGMRDFFYDTDVVSGATEEKAVSGFDIVRNKHLNLKPMDAEEAILQMNMLGHNFFIFED 161
Query: 275 EETGEINIVYKRKAGGYGVI 294
+T +IVY+R G YG+I
Sbjct: 162 ADTNGTSIVYRRNDGRYGLI 181
>gi|148543600|ref|YP_001270970.1| sigma 54 modulation protein/30S ribosomal protein S30P
[Lactobacillus reuteri DSM 20016]
gi|184153008|ref|YP_001841349.1| ribosomal subunit interface protein [Lactobacillus reuteri JCM
1112]
gi|227363438|ref|ZP_03847562.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
MM2-3]
gi|227545123|ref|ZP_03975172.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
CF48-3A]
gi|325681953|ref|ZP_08161471.1| ribosomal subunit interface protein [Lactobacillus reuteri MM4-1A]
gi|338203928|ref|YP_004650073.1| ribosomal subunit interface protein [Lactobacillus reuteri SD2112]
gi|148530634|gb|ABQ82633.1| SSU ribosomal protein S30P [Lactobacillus reuteri DSM 20016]
gi|183224352|dbj|BAG24869.1| ribosomal subunit interface protein [Lactobacillus reuteri JCM
1112]
gi|227071538|gb|EEI09837.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
MM2-3]
gi|227184911|gb|EEI64982.1| ribosome-associated inhibitor protein Y [Lactobacillus reuteri
CF48-3A]
gi|324978597|gb|EGC15546.1| ribosomal subunit interface protein [Lactobacillus reuteri MM4-1A]
gi|336449168|gb|AEI57783.1| ribosomal subunit interface protein [Lactobacillus reuteri SD2112]
Length = 182
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+E+T++++++V +++ K +V +H V L V
Sbjct: 2 LKFNIRGENVEVTESIRDYVVKRISKLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L + + +D D ++ +DD IVR K + P+ EA+ Q++ + H+F+
Sbjct: 108 L-------EFIPSDND-GTDGQDDELK---IVRTKQVSLKPMDPEEAVLQMDMLGHNFFI 156
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F++ ET +IVY+R G YG+I
Sbjct: 157 FQDAETNGTSIVYRRNDGRYGLI 179
>gi|242279720|ref|YP_002991849.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
salexigens DSM 2638]
gi|242122614|gb|ACS80310.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
salexigens DSM 2638]
Length = 178
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 31/153 (20%)
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
+ R +F+ H V A E +E +Y+++D+V ++ +LR+ EK H R R
Sbjct: 47 KFRHVAEVVFSSDHMHVSAYEVSEDMYSTVDMVLDKLEAQLRRANEKMRSHRRKEAAPAR 106
Query: 212 LKV--------REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLE 263
+ + REPV +VE+D+ F P++V EA EQL+
Sbjct: 107 MDILSYGEEEYREPV--IVESDS---------------------FVPKPMSVDEAAEQLQ 143
Query: 264 NVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
+DH+F FRN + IN++Y+R G +G+I P
Sbjct: 144 TLDHEFLVFRNADNEAINVIYRRNNGDFGLIDP 176
>gi|389856121|ref|YP_006358364.1| ribosome-associated protein [Streptococcus suis ST1]
gi|353739839|gb|AER20846.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis ST1]
Length = 180
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPIGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
QV ++ Q+ EE +VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEVK------VVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAN 158
Query: 277 TGEINIVYKRKAGGYGVI 294
G N++Y+R+ G G++
Sbjct: 159 DGTTNVLYRREDGDLGLL 176
>gi|206895901|ref|YP_002247295.1| ribosomal subunit interface protein [Coprothermobacter
proteolyticus DSM 5265]
gi|206738518|gb|ACI17596.1| ribosomal subunit interface protein [Coprothermobacter
proteolyticus DSM 5265]
Length = 190
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 107/200 (53%), Gaps = 23/200 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+VK+ + GKN+ELT +K ++EEK+G+ + + + V++ V + P + E
Sbjct: 6 NVKIDMVGKNIELTAAIKQYIEEKIGRV---YRYFDPILGVKVVVEKERQAREP-VFDVE 61
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
VTL ++RAE + +YA+ID + ++ +++ KEK +S G ++ L V
Sbjct: 62 VTLDANGR-LIRAEVEDPDLYAAIDKAADKLESNIKRFKEKLFDSRQGGKVEKTTTLNV- 119
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ EE+ V+E +I R K F + P++ EA+ Q+E++ H F+ F +
Sbjct: 120 ----------GSLLGEEK----VEEPLIERRKRFVVLPMSEEEAVLQMESLGHTFFVFMD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
+TG IVYKRK GYGVI
Sbjct: 166 PDTGNPKIVYKRKKRGYGVI 185
>gi|194397531|ref|YP_002038802.1| ribosomal subunit interface protein [Streptococcus pneumoniae G54]
gi|194357198|gb|ACF55646.1| ribosomal subunit interface protein [Streptococcus pneumoniae G54]
Length = 182
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TGQLFTDALV----EDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFXYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|429727778|ref|ZP_19262535.1| ribosomal subunit interface protein [Peptostreptococcus anaerobius
VPI 4330]
gi|429151629|gb|EKX94490.1| ribosomal subunit interface protein [Peptostreptococcus anaerobius
VPI 4330]
Length = 183
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 104/196 (53%), Gaps = 16/196 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+++ GK + LT+ + ++++K K L + ++R++V + K ++ EV
Sbjct: 1 MKILVTGKKIRLTEGINGYIDKKFSKL---EKLLSEDTELRVTVSANKKEK----QKVEV 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
TL +VRAE+ E +Y++ID+V + R++ K K K + E +
Sbjct: 54 TLDNINGHIVRAEDVQEDLYSAIDVVCDKLNRQIVKYKHKFKSRASGNETIRFENFNELL 113
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ +E + ED V E R K F++ P++ EA+ Q+ + HDF+ F++++T
Sbjct: 114 EEEIE------AVPEDSELVFE---RRKKFDIRPMSPEEAVLQMNLLGHDFFLFKDQDTF 164
Query: 279 EINIVYKRKAGGYGVI 294
E+ +VY+R GGYG+I
Sbjct: 165 EVCLVYRRGDGGYGLI 180
>gi|223932600|ref|ZP_03624600.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptococcus
suis 89/1591]
gi|253751286|ref|YP_003024427.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis SC84]
gi|253753187|ref|YP_003026327.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis P1/7]
gi|253755010|ref|YP_003028150.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus suis BM407]
gi|330832290|ref|YP_004401115.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis ST3]
gi|386579375|ref|YP_006075780.1| ribosome-associated protein [Streptococcus suis JS14]
gi|386581439|ref|YP_006077843.1| ribosome-associated protein [Streptococcus suis SS12]
gi|386583550|ref|YP_006079953.1| ribosome-associated protein [Streptococcus suis D9]
gi|386587670|ref|YP_006084071.1| ribosome-associated protein [Streptococcus suis A7]
gi|403061079|ref|YP_006649295.1| Sigma 54 modulation protein [Streptococcus suis S735]
gi|223898710|gb|EEF65071.1| sigma 54 modulation protein/ribosomal protein S30EA [Streptococcus
suis 89/1591]
gi|251815575|emb|CAZ51158.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis SC84]
gi|251817474|emb|CAZ55215.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis BM407]
gi|251819432|emb|CAR44909.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus suis P1/7]
gi|319757567|gb|ADV69509.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis JS14]
gi|329306513|gb|AEB80929.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis ST3]
gi|353733585|gb|AER14595.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis SS12]
gi|353735696|gb|AER16705.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis D9]
gi|354984831|gb|AER43729.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis A7]
gi|402808405|gb|AFQ99896.1| Sigma 54 modulation protein [Streptococcus suis S735]
Length = 180
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 2 IKFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKV 54
Query: 159 TLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVRE 216
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 55 EVTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV-- 104
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
QV ++ Q+ EE +VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 105 ATGQVFTDELVEQTGEEVK------VVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAN 158
Query: 277 TGEINIVYKRKAGGYGVI 294
G N++Y+R+ G G++
Sbjct: 159 DGTTNVLYRREDGDLGLL 176
>gi|329117365|ref|ZP_08246082.1| ribosomal subunit interface protein [Streptococcus parauberis NCFD
2020]
gi|333905476|ref|YP_004479347.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus parauberis KCTC 11537]
gi|326907770|gb|EGE54684.1| ribosomal subunit interface protein [Streptococcus parauberis NCFD
2020]
gi|333120741|gb|AEF25675.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus parauberis KCTC 11537]
gi|456369402|gb|EMF48302.1| Ribosomal subunit interface protein [Streptococcus parauberis
KRS-02109]
gi|457094751|gb|EMG25264.1| Ribosomal subunit interface protein [Streptococcus parauberis
KRS-02083]
Length = 182
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I+G+N+E+T+ ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IRFSIRGENIEVTEAIRDYVESKLSK-IEKYFVEDNEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TIILGSM-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV + + + EE +VR K + P+ + EA Q+E + HDFY + + E G
Sbjct: 107 GQVFTTEFEAEEVEETPEIR---VVRTKNVTLKPMDIEEARLQMELLGHDFYIYTDAENG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
E N++YKR+ G G+I K
Sbjct: 164 ETNVLYKREDGDLGLIEAK 182
>gi|339639963|ref|ZP_08661407.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
056 str. F0418]
gi|339453232|gb|EGP65847.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
056 str. F0418]
Length = 180
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEALRDYVVSKLEK-IEKYFQADQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ ++RAE+ ++ +Y SIDLV I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSIMLRAEDISQDMYGSIDLVVDKIERQIRKNKTK-------IERKNRSKV--SA 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+Q+ +V EE D+ V +VR K ++ P+ + EA+ Q++ + HDF+ + + E G
Sbjct: 107 SQIF---TEVLVEENDE--VSAKVVRSKHIDLKPMDLEEALLQMDLLGHDFFIYTDVEDG 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGDIGLL 177
>gi|452851253|ref|YP_007492937.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
piezophilus]
gi|451894907|emb|CCH47786.1| Sigma 54 modulation protein/ribosomal protein S30EA [Desulfovibrio
piezophilus]
Length = 179
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 28/197 (14%)
Query: 106 KNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
KN E +D +K + + EK+GK V E D+++++ +F R +
Sbjct: 8 KNFEPSDHLKGYAQKRFEKIGKFVPD-----SEADLQVNLLVEKF------RHKADVILN 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ + A ED+E +Y++ID+V ++ +LR+++EK + + +G N++++
Sbjct: 57 ADNIHISAYEDSEDMYSTIDMVLDKLEAQLRRMREKVKNRSKQARG-NKVQM-----NFF 110
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
D DV E IV +E P+++ EA EQL D++F F N ET ++N+
Sbjct: 111 SYD-DVTGEHI------PTIVGTDSYEAKPMSIDEAAEQLNTFDNEFLVFLNAETEDVNV 163
Query: 283 VYKRKAGGYGVIIPKGN 299
+YKRK G YG+I P GN
Sbjct: 164 IYKRKNGDYGLIDP-GN 179
>gi|417847623|ref|ZP_12493585.1| ribosomal subunit interface protein [Streptococcus mitis SK1073]
gi|417923192|ref|ZP_12566662.1| ribosomal subunit interface protein [Streptococcus mitis SK569]
gi|418968288|ref|ZP_13519906.1| ribosomal subunit interface protein [Streptococcus mitis SK616]
gi|339456457|gb|EGP69048.1| ribosomal subunit interface protein [Streptococcus mitis SK1073]
gi|342837125|gb|EGU71323.1| ribosomal subunit interface protein [Streptococcus mitis SK569]
gi|383340672|gb|EID18964.1| ribosomal subunit interface protein [Streptococcus mitis SK616]
Length = 182
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TSQLFTDALV----EDSNVVQSRVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|414564606|ref|YP_006043567.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus ATCC 35246]
gi|338847671|gb|AEJ25883.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus ATCC 35246]
Length = 182
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+QV ++ + + EE +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 SQVFTSEFEAEQAEETPEIK---VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G G+I K
Sbjct: 164 ATNVLYRREDGDLGLIEAK 182
>gi|422294701|gb|EKU22001.1| sigma 54 modulation protein ribosomal protein s30ea
[Nannochloropsis gaditana CCMP526]
Length = 59
Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 242 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKG 298
+V+ K F+MP ++ ++AI LE + HDFY FRNE++GEIN+VYKRK GG GVI P+
Sbjct: 3 VVKRKQFDMPAMSTADAIVCLEYIGHDFYVFRNEDSGEINVVYKRKLGGVGVIEPRA 59
>gi|160902874|ref|YP_001568455.1| sigma 54 modulation protein/ribosomal protein S30EA [Petrotoga
mobilis SJ95]
gi|160360518|gb|ABX32132.1| sigma 54 modulation protein/ribosomal protein S30EA [Petrotoga
mobilis SJ95]
Length = 199
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 110/204 (53%), Gaps = 25/204 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK---AVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
+ K +ELT+ ++N++E+++ K + KH +V DVR++ G I + E+T
Sbjct: 5 VYTKEVELTEALENYIEKRMSKPDHLLKKHPDIVSPSDVRITKERG-------IYKVEIT 57
Query: 160 LFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
+++ EE + +Y +ID V+ ++RK+RK+K + + R K K R +
Sbjct: 58 THINPLSKIIKVEERSNDLYEAIDEVTDSLERKIRKLKNRLQEQSRTDK-----KARMEI 112
Query: 219 TQVVENDADVQSEEEDDNFVDEV--------IVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
Q ++N D+++ + + E+ IVR K F++ ++V EA+ Q++ + H F+
Sbjct: 113 EQNLQN-PDIKNLDLAEENESEIEEKPDAPKIVRTKNFDLTLMSVEEAMLQMQLLGHSFF 171
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
FRN + I+++Y+RK G G+I
Sbjct: 172 VFRNPDNDAISVLYERKDGDLGLI 195
>gi|399887173|ref|ZP_10773050.1| Ribosome-associated protein Y (PSrp-1) [Clostridium arbusti SL206]
Length = 178
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 66/221 (29%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKA-------VLKHSHLVRE-----VDVRLSVRGGE 146
+++ I GKN+E+T+ +++ +E+K+ K V H+ L E V+V + G
Sbjct: 1 MRITISGKNVEVTNGLRSAIEKKLTKLDRYFNPDVTAHATLSVENYRQIVEVTIPFGGA- 59
Query: 147 FGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGR 204
++R EE +YA+IDLV+ ++R++RK K K +G
Sbjct: 60 --------------------ILRGEESNTDMYAAIDLVADKMERQVRKQKTKLDRKKYGA 99
Query: 205 HMK--------GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVS 256
++ + + +V+EP IV+ K F + P++
Sbjct: 100 SLRFQSIPDFEDYGKDEVKEPS-----------------------IVKTKKFAIKPMSEE 136
Query: 257 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297
EA+ Q+E + H F+ F+N ++ E+N+VYKRK G YG+I P+
Sbjct: 137 EAVLQMELLAHSFFVFQNADSTEVNVVYKRKDGNYGLIEPE 177
>gi|225871014|ref|YP_002746961.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. equi 4047]
gi|225700418|emb|CAW94798.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. equi 4047]
Length = 182
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KMST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+QV ++ + + EE +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 SQVFTSEFEAEKAEETPEIK---VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G G+I K
Sbjct: 164 ATNVLYRREDGDLGLIEAK 182
>gi|313673389|ref|YP_004051500.1| sigma 54 modulation protein/ribosomal protein s30ea
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940145|gb|ADR19337.1| sigma 54 modulation protein/ribosomal protein S30EA
[Calditerrivibrio nitroreducens DSM 19672]
Length = 178
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 26/197 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GKN+ELTD ++++VE+KV + + K+ V +V V L V+ + E+ L
Sbjct: 5 ITGKNIELTDAIRSYVEKKVSR-LKKYFEQVLDVQVILDVQKN-------VHLAEI-LVN 55
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR---LKVREPVT 219
K ++ E +E +YASIDL I+R+L K KEK K F + L + E +
Sbjct: 56 AKGVFLKGLEKSEDLYASIDLSVDKIERQLVKYKEKLKTKKLMEKDFEKPLTLNIYEH-S 114
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
VVE DA ++IV K + P+ V EA+ Q++ ++ +F+ FRN +GE
Sbjct: 115 SVVEKDAP------------QIIVS-KQIPVKPMDVEEAVMQMDLLNKNFFVFRNASSGE 161
Query: 280 INIVYKRKAGGYGVIIP 296
+++VY+R G G+I P
Sbjct: 162 VSVVYRRDDGNIGLIEP 178
>gi|21221452|ref|NP_627231.1| hypothetical protein SCO3009 [Streptomyces coelicolor A3(2)]
gi|289771262|ref|ZP_06530640.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces lividans TK24]
gi|7799204|emb|CAB90920.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|289701461|gb|EFD68890.1| sigma 54 modulation protein/SSU ribosomal protein S30P
[Streptomyces lividans TK24]
Length = 254
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 87 PVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGG 145
P + S G V ++++G+ E+ + + HV EK+ + + K V +DV +S +
Sbjct: 13 PSKRSDPGTEFCVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEP 71
Query: 146 EFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH 205
+ R R E+TL ++ V+RAE A YA++DL + + +LRK +K
Sbjct: 72 NPRQADRCDRVEITLRSRGP-VIRAEAAASDPYAALDLAAEKLGARLRKQHDKRFSR--- 127
Query: 206 MKGFNRLKVRE-----PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFF 248
+G R+ E P + + DV E+ D + ++VR K
Sbjct: 128 -RGARRISAAEVADHVPGAATLNGNGDVVPTEKQDGVPTKKIGSLEVQGDGPLVVREKTH 186
Query: 249 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+++ +A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 187 VAAPMSLDQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 232
>gi|424780246|ref|ZP_18207126.1| Ribosomal subunit interface protein [Catellicoccus marimammalium
M35/04/3]
gi|422843204|gb|EKU27645.1| Ribosomal subunit interface protein [Catellicoccus marimammalium
M35/04/3]
Length = 189
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 14/196 (7%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
K +I+G+N+E+TD ++ +VE+K+ K + ++ + V E +++R R + EVT
Sbjct: 3 KYVIRGENIEVTDAIRAYVEKKIDK-LTRYFNQVPEATAHVNLRVY----PERSTKIEVT 57
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFN-RLKVREPV 218
L + +RAEE +Y+ IDLV ++R+LRK K K + R + F+ L E +
Sbjct: 58 L-PLPYLTLRAEEMNPDLYSGIDLVVDKLERQLRKYKTKINRKMREKEKFSEHLHNLEVL 116
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E D + ++ D IVR K + P+ EAI Q+ + HDF+ F + + G
Sbjct: 117 AAQEEADEWEEEKQFD-------IVRTKHVNVKPMDSEEAILQMNMLGHDFFIFEDVDHG 169
Query: 279 EINIVYKRKAGGYGVI 294
++IVY+RK YG+I
Sbjct: 170 GVSIVYRRKDKKYGLI 185
>gi|290959921|ref|YP_003491103.1| hypothetical protein SCAB_55331 [Streptomyces scabiei 87.22]
gi|260649447|emb|CBG72562.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 241
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
V ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 12 VDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRSDRVE 70
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + ++ +LRK +K +G RL E
Sbjct: 71 ITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYTR----RGARRLTAAEV 125
Query: 217 ----PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFFEMPPLTVSEAIE 260
P + + V EE+ + + +IVR K P+T+ +A+
Sbjct: 126 ADHVPGVATLNGNGYVADEEKAEGVPTKKIGSLEVKGEGPLIVREKTHVASPMTLDQALY 185
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 186 EMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 219
>gi|442318119|ref|YP_007358140.1| ribosomal subunit interface protein [Myxococcus stipitatus DSM
14675]
gi|441485761|gb|AGC42456.1| ribosomal subunit interface protein [Myxococcus stipitatus DSM
14675]
Length = 220
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 31/155 (20%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGR----HMKGF-NRLKVRE---- 216
V+R + ++ +YASIDL I+R+LR+ ++K ++ HGR H + N LKVR
Sbjct: 60 VLRGRDKSDDMYASIDLAMDKIERQLRRYRDKLKTHHGRERVHHRQDLVNHLKVRHAVFE 119
Query: 217 ---------------PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQ 261
PV +VVE+ A +VR + PL+V EA+ Q
Sbjct: 120 VPDAEEPAAKPTPEAPVAKVVESAASTPISAATR------VVRATQLTVKPLSVDEAVMQ 173
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
+ +++DFY F N E+ + I+Y+RK G YG+I P
Sbjct: 174 MNLMNNDFYVFHNVESDALGIIYRRKDGQYGLIEP 208
>gi|225859977|ref|YP_002741487.1| ribosome-associated protein Y [Streptococcus pneumoniae 70585]
gi|225721264|gb|ACO17118.1| ribosome-associated protein Y [Streptococcus pneumoniae 70585]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 110/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATGQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T DA V ED N V +VR+K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 T-----DALV----EDSNVVQSKVVRLKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 ITNVIYRREDGEIGLL 177
>gi|225868030|ref|YP_002743978.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus]
gi|225701306|emb|CAW98316.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus equi subsp. zooepidemicus]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFVEEQEIDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R +++ E
Sbjct: 57 TI-PLGSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHREKVSTSQVFTSEFE 115
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ VE +++ +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 116 AEQVEETPEIK------------VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDAEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++Y+R+ G G+I K
Sbjct: 164 ATNVLYRREDGDLGLIEAK 182
>gi|419841380|ref|ZP_14364752.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|386905314|gb|EIJ70083.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
Length = 180
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+KL IQGK L LTD +K + E K K H ++ E++V LS ++ G +
Sbjct: 1 MKLSIQGKRLVLTDAIKAYAERKFEKVEKFHDGIL-EINVTLSAVKLKTGNY------HS 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + ++A E +Y +ID + ++ +L+K K+K + KG K
Sbjct: 54 AEVLAYLSGK-TLKATSTEEDLYFAIDQAADALEVQLKKHKDK-NKRANSQKGGKSWKF- 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P + +V N +E+ V ++ + P+++ EA+ QLE +D F+ F++
Sbjct: 111 DPESGIVTN-------QEERRMVKVLLPK------KPMSMEEALLQLEVLDKQFFAFKSL 157
Query: 276 ETGEINIVYKRKAGGYGVII 295
ETG+++IVYKRK G YG II
Sbjct: 158 ETGKMSIVYKRKDGDYGYII 177
>gi|315655989|ref|ZP_07908887.1| S30AE family protein [Mobiluncus curtisii ATCC 51333]
gi|315490053|gb|EFU79680.1| S30AE family protein [Mobiluncus curtisii ATCC 51333]
Length = 219
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 15/204 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + ++EEK+ K V + + + VDV L+ K PR
Sbjct: 13 MEITVKARNAEIHPNFREYIEEKIAK-VEQLAPRTQRVDVELT-----HEKNPRQADTAE 66
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ DH ++ + L
Sbjct: 67 RIELTVLGKG-PVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELD 125
Query: 214 VREPVTQ---VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
V+ P V+ + E+ VIVR K E ++V EA++++E V H FY
Sbjct: 126 VQIPEADEAPAVKPPLKLGESREEQLGDSPVIVREKLHESRAMSVEEALDEMELVGHPFY 185
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F + ET + +VY RK YGVI
Sbjct: 186 LFIDSETAQPAVVYHRKGWTYGVI 209
>gi|433448441|ref|ZP_20411373.1| ribosome-associated protein Y (PSrp-1) [Weissella ceti NC36]
gi|429539912|gb|ELA07946.1| ribosome-associated protein Y (PSrp-1) [Weissella ceti NC36]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 29/197 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVD----VRLSV-RGGEFGKGPRIRRCE 157
++G N E+T+ ++ +VE++V K + + D V+L+ + +F E
Sbjct: 6 VRGINFEVTEAIQEYVEKRVSKL---ERYFKDDADYTAHVKLTANKNKQFT-------VE 55
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
V + T + +VRAE+ E +Y +ID V ++R++RK K K + R KG+ L+
Sbjct: 56 VLIQTP-YVLVRAEDTQEDLYQAIDFVVEKLERQVRKYKTKVNRKSRE-KGYKGLEFD-- 111
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
VE D D++ E+ N IVR K E+ P+ EA+ Q+E + HDFY F N ET
Sbjct: 112 ----VE-DIDIEEPEDSLN-----IVRKKSVELKPMDPEEAVLQMELLQHDFYIFINAET 161
Query: 278 GEINIVYKRKAGGYGVI 294
+ +VYKRK Y ++
Sbjct: 162 DQPGVVYKRKDNKYALL 178
>gi|418065432|ref|ZP_12702805.1| ribosomal subunit interface protein [Geobacter metallireducens
RCH3]
gi|373562172|gb|EHP88389.1| ribosomal subunit interface protein [Geobacter metallireducens
RCH3]
Length = 181
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 16/143 (11%)
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVTL T K ++A E+ +YA+ID V I+R+LR+ KE RLK
Sbjct: 50 AEVTL-TAKGVTIKAAEETNDMYAAIDAVVDKIERQLRRYKE-------------RLKNH 95
Query: 216 EPVT--QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
+P + +E + + E D + VIVR K + P++V EA+ Q++ + DF F
Sbjct: 96 KPAVDNRALEVQKTILTAESIDQQQEPVIVRSKTITIKPMSVEEAVMQVDLLHKDFLVFT 155
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
+ T IN+VY+RK G YG+I P
Sbjct: 156 DSTTEVINVVYRRKDGNYGLIEP 178
>gi|256833042|ref|YP_003161769.1| sigma 54 modulation protein/30S ribosomal protein S30EA [Jonesia
denitrificans DSM 20603]
gi|256686573|gb|ACV09466.1| sigma 54 modulation protein/ribosomal protein S30EA [Jonesia
denitrificans DSM 20603]
Length = 219
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+++++ G++ E+ D + H EEK+ K + +++ R VDV ++ E+ R V
Sbjct: 1 MEIVVVGRHTEVADRFREHAEEKLSK-IAQYAPTARRVDVEVT---HEYNPRQSARSERV 56
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM-------KGFN 210
L + G V+RAE ++ + ++DL +Q +LR+ E++ R + K +
Sbjct: 57 ELTVRDKGPVIRAEAASDDRFGALDLALDKLQERLRRAHERKYTSKRRIPRKLEVPKDLD 116
Query: 211 RLKV---REPVTQVVENDADVQSEEEDDNFVD------EVIVRMKFFEMPPLTVSEAIEQ 261
+++ EP TQ E V + V+ VI+R K P+TV +AI++
Sbjct: 117 AIEMIPDPEPPTQE-EATPSVPHPTQPGETVEVQLGDSPVIIRQKLHNASPMTVDDAIDE 175
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDF+ F ++++ ++ Y+R+ YGVI
Sbjct: 176 MELVGHDFFLFVDKDSKRPSVAYRRRGWTYGVI 208
>gi|168177504|ref|ZP_02612168.1| ribosomal subunit interface protein [Clostridium botulinum NCTC
2916]
gi|226947394|ref|YP_002802485.1| ribosomal subunit interface protein [Clostridium botulinum A2 str.
Kyoto]
gi|421839231|ref|ZP_16272863.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001627]
gi|182671065|gb|EDT83039.1| ribosomal subunit interface protein [Clostridium botulinum NCTC
2916]
gi|226841492|gb|ACO84158.1| ribosomal subunit interface protein [Clostridium botulinum A2 str.
Kyoto]
gi|409735365|gb|EKN36955.1| ribosomal subunit interface protein [Clostridium botulinum
CFSAN001627]
Length = 175
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 31/202 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K+ + GKN+E+T+ ++ VE+K+ K + V LSV + + EV
Sbjct: 1 MKITVIGKNIEITNALRETVEKKLSKLERFFNPDVV-ATATLSVHKNK-------QTIEV 52
Query: 159 TLFTKKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEK--ESDHGRHMKGFNRLKVR 215
T+ HGV+ R EE E +YASID+V ++ ++RK K K H ++ F +
Sbjct: 53 TI--PFHGVILRGEETTEDMYASIDMVIDKLEGQVRKQKTKLQRKIHDGSLR-FQYI--- 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
D +S E + IV+ K F M P++ EA+ Q+E + H+F+ ++N
Sbjct: 107 ----------PDYESGENKET----QIVKTKKFAMKPMSSEEAVLQMELLGHNFFVYQNA 152
Query: 276 ETGEINIVYKRKAGGYGVIIPK 297
+T E+N++Y+RK G YG+I P+
Sbjct: 153 DTEEVNVIYRRKDGNYGLIEPE 174
>gi|336326269|ref|YP_004606235.1| hypothetical protein CRES_1719 [Corynebacterium resistens DSM
45100]
gi|336102251|gb|AEI10071.1| hypothetical protein CRES_1719 [Corynebacterium resistens DSM
45100]
Length = 222
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 34/211 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR------C 156
I G+N+E+ + + V+ K+ K + +D L+ E P RR
Sbjct: 20 ITGRNVEVPEHFADRVKGKLAK--------IERLDPTLTYFHVELKHEPNPRRSDESDRI 71
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE----SDHGRHMKGFNRL 212
++T K H V RAE ++ YA++++ ++R LRK+K + + H R KG
Sbjct: 72 QITATGKGH-VARAEAKEDSFYAALEVAVGRMERSLRKVKARRKIAMTGH-RAPKGMG-- 127
Query: 213 KVREPVTQVVENDADVQSEEE---------DDNFVDEVIVRMKFFEMPPLTVSEAIEQLE 263
E +VE Q EE+ +D F +VR K + P+TV +A+ ++E
Sbjct: 128 ---EATAALVEEAKPDQVEEKPGKYDVDPYEDQFKPGQVVRKKVHKAEPMTVDDALSEME 184
Query: 264 NVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
V HDF+ F NEET + ++VY+R A YG+I
Sbjct: 185 LVGHDFFLFINEETKQPSVVYRRHAYDYGLI 215
>gi|430822864|ref|ZP_19441439.1| ribosomal subunit interface protein [Enterococcus faecium E0120]
gi|430865543|ref|ZP_19481178.1| ribosomal subunit interface protein [Enterococcus faecium E1574]
gi|430442793|gb|ELA52814.1| ribosomal subunit interface protein [Enterococcus faecium E0120]
gi|430552890|gb|ELA92607.1| ribosomal subunit interface protein [Enterococcus faecium E1574]
Length = 183
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ A E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + T +I
Sbjct: 109 DATALFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAGTNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|260102490|ref|ZP_05752727.1| ribosomal subunit interface protein [Lactobacillus helveticus DSM
20075]
gi|260083695|gb|EEW67815.1| ribosomal subunit interface protein [Lactobacillus helveticus DSM
20075]
Length = 188
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 108/201 (53%), Gaps = 20/201 (9%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI 153
G +K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R
Sbjct: 4 GESYMLKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA--- 59
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
+ EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG
Sbjct: 60 -KVEVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFF 116
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
V +P + + D IVR K + P+ EAI Q++ ++HDF+ F
Sbjct: 117 VEQPEEEEKKPSE-----------FD--IVRNKRVSLKPMDPEEAILQMDMMEHDFFVFE 163
Query: 274 NEETGEINIVYKRKAGGYGVI 294
+ ET I++VY+R G YG+I
Sbjct: 164 DAETNGISVVYRRNDGRYGLI 184
>gi|15902013|ref|NP_346617.1| ribosomal subunit interface protein [Streptococcus pneumoniae
TIGR4]
gi|15904052|ref|NP_359602.1| ribosomal subunit interface protein [Streptococcus pneumoniae R6]
gi|111657979|ref|ZP_01408685.1| hypothetical protein SpneT_02000835 [Streptococcus pneumoniae
TIGR4]
gi|116516918|ref|YP_817418.1| ribosomal subunit interface protein [Streptococcus pneumoniae D39]
gi|149020125|ref|ZP_01835099.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP23-BS72]
gi|168491739|ref|ZP_02715882.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC0288-04]
gi|168494033|ref|ZP_02718176.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC3059-06]
gi|225857775|ref|YP_002739286.1| ribosome-associated protein Y [Streptococcus pneumoniae P1031]
gi|225862022|ref|YP_002743531.1| ribosome-associated protein Y [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229658|ref|ZP_06963339.1| ribosome-associated protein Y [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255676|ref|ZP_06979262.1| ribosome-associated protein Y [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501721|ref|YP_003723661.1| ribosome-associated inhibitor protein Y [Streptococcus pneumoniae
TCH8431/19A]
gi|387789246|ref|YP_006254314.1| ribosomal subunit interface protein [Streptococcus pneumoniae
ST556]
gi|410477543|ref|YP_006744302.1| ribosomal subunit interface protein [Streptococcus pneumoniae
gamPNI0373]
gi|417313674|ref|ZP_12100383.1| ribosome-associated protein Y [Streptococcus pneumoniae GA04375]
gi|417695078|ref|ZP_12344262.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae GA47901]
gi|417699582|ref|ZP_12348750.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA41317]
gi|418075056|ref|ZP_12712302.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11184]
gi|418079659|ref|ZP_12716878.1| ribosomal subunit interface protein [Streptococcus pneumoniae
4027-06]
gi|418081863|ref|ZP_12719069.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 6735-05]
gi|418084032|ref|ZP_12721224.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44288]
gi|418086194|ref|ZP_12723369.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47281]
gi|418087810|ref|ZP_12724975.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47033]
gi|418090583|ref|ZP_12727733.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43265]
gi|418095012|ref|ZP_12732135.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae GA49138]
gi|418099546|ref|ZP_12736639.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 6901-05]
gi|418101689|ref|ZP_12738768.1| sigma 54 modulation / S30EA ribosomal family protein [Streptococcus
pneumoniae 7286-06]
gi|418103944|ref|ZP_12741012.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP070]
gi|418106346|ref|ZP_12743396.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44500]
gi|418115724|ref|ZP_12752707.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 5787-06]
gi|418117894|ref|ZP_12754860.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 6963-05]
gi|418119681|ref|ZP_12756632.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA18523]
gi|418122281|ref|ZP_12759221.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44194]
gi|418135990|ref|ZP_12772839.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11426]
gi|418142752|ref|ZP_12779559.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13455]
gi|418149543|ref|ZP_12786302.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13856]
gi|418151720|ref|ZP_12788462.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA14798]
gi|418153990|ref|ZP_12790724.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16121]
gi|418158579|ref|ZP_12795288.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16833]
gi|418165531|ref|ZP_12802193.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17371]
gi|418167868|ref|ZP_12804518.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17971]
gi|418172364|ref|ZP_12808981.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19451]
gi|418174636|ref|ZP_12811242.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41277]
gi|418188205|ref|ZP_12824723.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47360]
gi|418194760|ref|ZP_12831246.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47439]
gi|418199067|ref|ZP_12835519.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47778]
gi|418203458|ref|ZP_12839880.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA52306]
gi|418217665|ref|ZP_12844340.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae Netherlands15B-37]
gi|418224422|ref|ZP_12851057.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 5185-06]
gi|418228706|ref|ZP_12855319.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 3063-00]
gi|418231043|ref|ZP_12857637.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP01]
gi|419426162|ref|ZP_13966353.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 7533-05]
gi|419428273|ref|ZP_13968450.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 5652-06]
gi|419430417|ref|ZP_13970572.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11856]
gi|419432601|ref|ZP_13972726.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP05]
gi|419434833|ref|ZP_13974947.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40183]
gi|419437027|ref|ZP_13977108.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 8190-05]
gi|419439198|ref|ZP_13979261.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13499]
gi|419441406|ref|ZP_13981446.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40410]
gi|419445733|ref|ZP_13985744.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19923]
gi|419447894|ref|ZP_13987895.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 7879-04]
gi|419449993|ref|ZP_13989986.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 4075-00]
gi|419452138|ref|ZP_13992118.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP02]
gi|419454298|ref|ZP_13994265.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP03]
gi|419456464|ref|ZP_13996418.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP04]
gi|419465563|ref|ZP_14005451.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA04175]
gi|419470008|ref|ZP_14009872.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA06083]
gi|419476602|ref|ZP_14016433.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA14688]
gi|419478866|ref|ZP_14018685.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA18068]
gi|419483226|ref|ZP_14023009.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40563]
gi|419483239|ref|ZP_14023021.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40563]
gi|419487752|ref|ZP_14027511.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44128]
gi|419492138|ref|ZP_14031869.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47179]
gi|419496403|ref|ZP_14036117.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47461]
gi|419498583|ref|ZP_14038285.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47522]
gi|419502872|ref|ZP_14042550.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47628]
gi|419507070|ref|ZP_14046728.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA49194]
gi|419519932|ref|ZP_14059535.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA08825]
gi|419529179|ref|ZP_14068716.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17719]
gi|419533405|ref|ZP_14072917.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA47794]
gi|419535708|ref|ZP_14075202.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17457]
gi|421209912|ref|ZP_15666921.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070005]
gi|421228471|ref|ZP_15685164.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2072047]
gi|421230757|ref|ZP_15687415.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2061376]
gi|421241677|ref|ZP_15698218.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2080913]
gi|421243983|ref|ZP_15700492.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2081074]
gi|421246480|ref|ZP_15702970.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2082170]
gi|421250475|ref|ZP_15706925.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2082239]
gi|421267193|ref|ZP_15718070.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR27]
gi|421269389|ref|ZP_15720251.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR95]
gi|421271646|ref|ZP_15722496.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR48]
gi|421276058|ref|ZP_15726884.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA52612]
gi|421282198|ref|ZP_15732991.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA04672]
gi|421286524|ref|ZP_15737295.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA60190]
gi|421288616|ref|ZP_15739374.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA58771]
gi|421293015|ref|ZP_15743746.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA56348]
gi|421303901|ref|ZP_15754562.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17484]
gi|421308408|ref|ZP_15759046.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA60132]
gi|421310611|ref|ZP_15761233.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA62681]
gi|421312966|ref|ZP_15763563.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA58981]
gi|444386642|ref|ZP_21184669.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS125219]
gi|444391095|ref|ZP_21189008.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS70012]
gi|444393477|ref|ZP_21191123.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS81218]
gi|444396099|ref|ZP_21193633.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0002]
gi|444398491|ref|ZP_21195973.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0006]
gi|444399603|ref|ZP_21197050.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0007]
gi|444403211|ref|ZP_21200322.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0008]
gi|444405334|ref|ZP_21202243.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0009]
gi|444408108|ref|ZP_21204775.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0010]
gi|444410587|ref|ZP_21207115.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0076]
gi|444412509|ref|ZP_21208830.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0153]
gi|444415463|ref|ZP_21211700.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0199]
gi|444418470|ref|ZP_21214449.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0360]
gi|444421104|ref|ZP_21216858.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0427]
gi|444422931|ref|ZP_21218567.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0446]
gi|14973718|gb|AAK76257.1| ribosomal subunit interface protein [Streptococcus pneumoniae
TIGR4]
gi|15459716|gb|AAL00813.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116077494|gb|ABJ55214.1| ribosomal subunit interface protein [Streptococcus pneumoniae D39]
gi|147930803|gb|EDK81784.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP23-BS72]
gi|183573946|gb|EDT94474.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC0288-04]
gi|183576007|gb|EDT96535.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC3059-06]
gi|225725366|gb|ACO21218.1| ribosome-associated protein Y [Streptococcus pneumoniae P1031]
gi|225727878|gb|ACO23729.1| ribosome-associated protein Y [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237316|gb|ADI68447.1| ribosome-associated inhibitor protein Y [Streptococcus pneumoniae
TCH8431/19A]
gi|327388950|gb|EGE87298.1| ribosome-associated protein Y [Streptococcus pneumoniae GA04375]
gi|332198619|gb|EGJ12702.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA41317]
gi|332199027|gb|EGJ13108.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae GA47901]
gi|353745230|gb|EHD25901.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11184]
gi|353745402|gb|EHD26072.1| ribosomal subunit interface protein [Streptococcus pneumoniae
4027-06]
gi|353750185|gb|EHD30827.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 6735-05]
gi|353753556|gb|EHD34179.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44288]
gi|353755034|gb|EHD35644.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47281]
gi|353755487|gb|EHD36090.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47033]
gi|353759583|gb|EHD40167.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43265]
gi|353762549|gb|EHD43108.1| Sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae GA49138]
gi|353767766|gb|EHD48298.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 6901-05]
gi|353768788|gb|EHD49311.1| sigma 54 modulation / S30EA ribosomal family protein [Streptococcus
pneumoniae 7286-06]
gi|353773507|gb|EHD54004.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP070]
gi|353774308|gb|EHD54801.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44500]
gi|353783687|gb|EHD64114.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 5787-06]
gi|353787095|gb|EHD67504.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 6963-05]
gi|353788794|gb|EHD69190.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA18523]
gi|353790610|gb|EHD70992.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44194]
gi|353802453|gb|EHD82748.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13455]
gi|353810345|gb|EHD90597.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13856]
gi|353812043|gb|EHD92279.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA14798]
gi|353815316|gb|EHD95536.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16121]
gi|353819761|gb|EHD99950.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16833]
gi|353827311|gb|EHE07464.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17371]
gi|353827612|gb|EHE07763.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17971]
gi|353833567|gb|EHE13677.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19451]
gi|353834722|gb|EHE14820.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41277]
gi|353848014|gb|EHE28033.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47360]
gi|353854899|gb|EHE34870.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47439]
gi|353859482|gb|EHE39433.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47778]
gi|353864589|gb|EHE44501.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA52306]
gi|353868478|gb|EHE48365.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae Netherlands15B-37]
gi|353876954|gb|EHE56799.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 5185-06]
gi|353879015|gb|EHE58843.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 3063-00]
gi|353884353|gb|EHE64153.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP01]
gi|353899837|gb|EHE75404.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11426]
gi|379138988|gb|AFC95779.1| ribosomal subunit interface protein [Streptococcus pneumoniae
ST556]
gi|379535543|gb|EHZ00744.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13499]
gi|379535689|gb|EHZ00887.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA04175]
gi|379542718|gb|EHZ07873.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA06083]
gi|379548665|gb|EHZ13785.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11856]
gi|379557318|gb|EHZ22364.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA14688]
gi|379561848|gb|EHZ26863.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17457]
gi|379562823|gb|EHZ27832.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17719]
gi|379563138|gb|EHZ28143.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA18068]
gi|379569553|gb|EHZ34523.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19923]
gi|379575075|gb|EHZ40012.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40183]
gi|379576063|gb|EHZ40992.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40410]
gi|379577348|gb|EHZ42269.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40563]
gi|379577758|gb|EHZ42676.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA40563]
gi|379584644|gb|EHZ49510.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44128]
gi|379591219|gb|EHZ56048.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47179]
gi|379591903|gb|EHZ56723.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47461]
gi|379597647|gb|EHZ62445.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47522]
gi|379598087|gb|EHZ62882.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47628]
gi|379604308|gb|EHZ69069.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA47794]
gi|379604517|gb|EHZ69276.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA49194]
gi|379611314|gb|EHZ76041.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 8190-05]
gi|379611634|gb|EHZ76357.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 7879-04]
gi|379616149|gb|EHZ80849.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 5652-06]
gi|379616568|gb|EHZ81263.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 7533-05]
gi|379620937|gb|EHZ85587.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae 4075-00]
gi|379621357|gb|EHZ86005.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP02]
gi|379622436|gb|EHZ87071.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP03]
gi|379626427|gb|EHZ91045.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP04]
gi|379626634|gb|EHZ91251.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae EU-NP05]
gi|379638086|gb|EIA02632.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA08825]
gi|395572082|gb|EJG32683.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070005]
gi|395592365|gb|EJG52636.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2072047]
gi|395592559|gb|EJG52824.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2061376]
gi|395605659|gb|EJG65778.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2081074]
gi|395605953|gb|EJG66064.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2080913]
gi|395612052|gb|EJG72098.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2082239]
gi|395616090|gb|EJG76103.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2082170]
gi|395865578|gb|EJG76717.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR27]
gi|395865785|gb|EJG76923.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR48]
gi|395866308|gb|EJG77439.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR95]
gi|395871812|gb|EJG82914.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA52612]
gi|395878645|gb|EJG89708.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA04672]
gi|395884762|gb|EJG95798.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA60190]
gi|395885248|gb|EJG96275.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA58771]
gi|395891263|gb|EJH02265.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA56348]
gi|395898318|gb|EJH09263.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17484]
gi|395905211|gb|EJH16117.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA60132]
gi|395907718|gb|EJH18608.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA58981]
gi|395908226|gb|EJH19109.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA62681]
gi|406370488|gb|AFS44178.1| ribosomal subunit interface protein [Streptococcus pneumoniae
gamPNI0373]
gi|444254393|gb|ELU60826.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS125219]
gi|444255253|gb|ELU61609.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS70012]
gi|444255474|gb|ELU61826.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0002]
gi|444259220|gb|ELU65536.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0006]
gi|444259516|gb|ELU65829.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS81218]
gi|444264910|gb|ELU70950.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0008]
gi|444268464|gb|ELU74318.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0007]
gi|444271704|gb|ELU77455.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0010]
gi|444274243|gb|ELU79896.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0009]
gi|444274471|gb|ELU80118.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0153]
gi|444277052|gb|ELU82576.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0076]
gi|444279846|gb|ELU85230.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0199]
gi|444281433|gb|ELU86751.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0360]
gi|444283201|gb|ELU88406.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0427]
gi|444287742|gb|ELU92655.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PNI0446]
Length = 182
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TGQLFTDALV----EDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|149201448|ref|ZP_01878423.1| ribosomal subunit interface protein, putative [Roseovarius sp.
TM1035]
gi|149145781|gb|EDM33807.1| ribosomal subunit interface protein, putative [Roseovarius sp.
TM1035]
Length = 238
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 26/245 (10%)
Query: 58 KTLSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNH 117
K LS+++ G F + + + P +S +G ++ I GK +++ + ++ H
Sbjct: 14 KGLSWDNFATGQFSASGINQTRGAYAAYGP-GLSIEG--DEMRYQISGKQIDIGEALQTH 70
Query: 118 VEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 177
V+E++G AV K++ + V S EF CE + +A A +
Sbjct: 71 VKEELGTAVAKYAERPTDAMVVFSKSASEFA-------CEAIVHLSTGLTAQASAKAHEI 123
Query: 178 YASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV------TQVVENDADVQSE 231
YA+ D ++++LR+ K + DH R EPV T ++ D+ + E
Sbjct: 124 YAAFDACCEKMEKQLRRYKRRLKDHHRDRA--------EPVELFGASTYILAGDS-AEPE 174
Query: 232 EEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGY 291
E D+ ++ M+ ++P L+V EA+ Q+E FR + +N+VY+R+ G
Sbjct: 175 SEPDSLQPIIVAEMET-KIPSLSVGEAVMQMELAGAPVLVFRKQGKDTVNVVYRREDGNI 233
Query: 292 GVIIP 296
G I P
Sbjct: 234 GWIDP 238
>gi|389876034|ref|YP_006369599.1| sigma 54 modulation protein [Tistrella mobilis KA081020-065]
gi|388526818|gb|AFK52015.1| sigma 54 modulation protein [Tistrella mobilis KA081020-065]
Length = 199
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 103/206 (50%), Gaps = 17/206 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L + GK +++ D +++HV E++ + V K+ +D ++ FG+ + RC++
Sbjct: 1 MQLTVTGKQIDVGDALRDHVSEELDRGVSKY--FDDAIDAHVA-----FGRDAHLFRCDI 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-------HMKGFNR 211
++ ++ +++A ++ +Y + D S +++LR+ K + DH R F
Sbjct: 54 SVHARRGVMMKASGASDEIYVAFDQALSRAEKQLRRYKRRLRDHHRTDARADAAQNSFAS 113
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
+ R V E D V+ E+ D V++ + LTV EA+ +++ D
Sbjct: 114 IPARAYVL-AAEEDETVEREDVADGH--PVVIAETDTAILSLTVGEAVMRMDLADQAALL 170
Query: 272 FRNEETGEINIVYKRKAGGYGVIIPK 297
FRN+ G +N+VY+R+ G G + P+
Sbjct: 171 FRNKAHGGLNLVYRREDGNIGWVDPR 196
>gi|310829211|ref|YP_003961568.1| ribosome-associated protein [Eubacterium limosum KIST612]
gi|308740945|gb|ADO38605.1| ribosome-associated protein [Eubacterium limosum KIST612]
Length = 177
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+ +++ +K + +K K + +E +V + F K + E+
Sbjct: 1 MKFTIYGKNMHVSEGLKEALRKKFEKF---DRYFGQETEVYAT-----FSKEKNFQMLEI 52
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREP 217
T+ K ++RAEE +E + SI+ V ++ +LRK K K + + +N L EP
Sbjct: 53 TIPMGK-TILRAEEKSEDMAGSIEAVVDKLEGQLRKHKTKLQKRYAEEALKYN-LDGLEP 110
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
+ E+ V VR K F + P++V EA Q+E + HDF+ F N ET
Sbjct: 111 MEDYEEHPPKV--------------VRTKKFAVKPMSVDEATMQMELLGHDFFVFLNAET 156
Query: 278 GEINIVYKRKAGGYGVIIP 296
++N+VY RK G YG+I P
Sbjct: 157 EDVNVVYMRKDGNYGLIEP 175
>gi|302023440|ref|ZP_07248651.1| ribosome-associated protein Y (PSrp-1) [Streptococcus suis 05HAS68]
Length = 180
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 110/197 (55%), Gaps = 25/197 (12%)
Query: 100 KLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVT 159
K I+G+NLE+T+ ++ +VEEKV K + K+ + +E++ ++++ K R +R +V
Sbjct: 3 KFSIRGENLEVTEALRTYVEEKVAK-IEKYFNEEQELNAKVNL------KVYRDKRAKVE 55
Query: 160 LFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVREP 217
+ V +RAE+ ++ +Y SIDLV I+R++R+ K K E H R KV
Sbjct: 56 VTIPVGAVTLRAEDISQEMYGSIDLVVDKIERQIRRNKTKIERKH--------RQKV--A 105
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
QV ++ Q+ EE +VR K ++ P+ + EA+ QLE + HDF+ + +
Sbjct: 106 TGQVFTDELVEQTGEEVK------VVRTKQVDLKPMDMEEAVLQLELLGHDFFIYTDAND 159
Query: 278 GEINIVYKRKAGGYGVI 294
G N++Y+R+ G G++
Sbjct: 160 GTTNVLYRREDGDLGLL 176
>gi|294812929|ref|ZP_06771572.1| Putative sigma 54 modulation protein/ribosomal protein S30EA
[Streptomyces clavuligerus ATCC 27064]
gi|294325528|gb|EFG07171.1| Putative sigma 54 modulation protein/ribosomal protein S30EA
[Streptomyces clavuligerus ATCC 27064]
Length = 256
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + K V +DV +S + + R R
Sbjct: 26 CVDIVVKGRKTEVPERFRKHVAEKLKLDKIQKLDAKVISLDVEVS-KEHNPRQADRSDRV 84
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL---K 213
E+TL ++ V+RAE A YA++DL + ++ +LRK +K + +G RL +
Sbjct: 85 EITLHSRG-PVIRAEAAAGDPYAALDLATGKLEARLRKQHDKRNTR----RGNGRLSAAE 139
Query: 214 VREPVTQVVENDADVQS--EEEDDNFV-------------DEVIVRMKFFEMPPLTVSEA 258
V + V V E +A+ Q EE+ + ++VR K P+T+ +A
Sbjct: 140 VADVVPGVAELNANGQPVVEEQQPPAIPTTRIGSLEVQGEGPLVVREKIHTAAPMTLDQA 199
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F + ET + ++VY+R A YGVI
Sbjct: 200 LYEMELVGHDFYLFVDSETKQPSVVYRRHAYDYGVI 235
>gi|333397311|ref|ZP_08479124.1| ribosome-associated factor Y [Leuconostoc gelidum KCTC 3527]
gi|406600566|ref|YP_006745912.1| ribosome-associated factor Y [Leuconostoc gelidum JB7]
gi|406372101|gb|AFS41026.1| ribosome-associated factor Y [Leuconostoc gelidum JB7]
Length = 182
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 109/192 (56%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++ +VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALREYVEKRLTKL---NRYIEEKSSANVNLRTY---KSDNSGKVEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+++ ++ + E DD+ + IVR K ++ P++ EA Q++ + H F+ F++ ET ++
Sbjct: 108 DSNDEIPASEVDDDALQ--IVRTKQVDLKPMSPEEAALQMDLLAHSFFIFKDAETNTDSV 165
Query: 283 VYKRKAGGYGVI 294
+YKR+ G YG++
Sbjct: 166 IYKRQDGKYGLL 177
>gi|315604874|ref|ZP_07879932.1| ribosomal subunit interface protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313413|gb|EFU61472.1| ribosomal subunit interface protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 215
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 27/216 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ + + +N E+ + +VEEKV K + + + VDV L+ + PR
Sbjct: 1 MDITVVARNAEIHPNFRAYVEEKVSK-ITQFYPRAQRVDVELT-----HERNPRQADTAE 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR-HMKGFNRLK 213
R E+T+F K ++RAE + YA++D+ + + +LR+++++ DH R + + +
Sbjct: 55 RIELTVFGKG-PIIRAEAKSADRYAAVDIAAGKLYERLRRLRDRVKDHRRRYPRDLAETE 113
Query: 214 VREPVTQVVE---------------NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEA 258
+ + V D V E+ +IVR K E PP++V EA
Sbjct: 114 ILDAAPTAVPEAAPEPEAPKPLRSAEDLKVGEAREEQWGDTPIIVRQKVHEAPPMSVDEA 173
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++Q+ V H F+ F + +T + +VY R YGV+
Sbjct: 174 LDQMMMVGHPFFLFVDRDTNQPCVVYHRHGWTYGVL 209
>gi|161507198|ref|YP_001577152.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus DPC 4571]
gi|403515422|ref|YP_006656242.1| phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus R0052]
gi|160348187|gb|ABX26861.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus DPC 4571]
gi|403080860|gb|AFR22438.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus R0052]
Length = 181
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + D IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSE-----------FD--IVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETN 161
Query: 279 EINIVYKRKAGGYGVI 294
I++VY+R G YG+I
Sbjct: 162 GISVVYRRNDGRYGLI 177
>gi|289168883|ref|YP_003447152.1| ribosome-associated protein [Streptococcus mitis B6]
gi|307705878|ref|ZP_07642716.1| ribosomal subunit interface protein [Streptococcus mitis SK597]
gi|307710333|ref|ZP_07646774.1| ribosomal subunit interface protein [Streptococcus mitis SK564]
gi|307711191|ref|ZP_07647613.1| ribosomal subunit interface protein [Streptococcus mitis SK321]
gi|322377936|ref|ZP_08052424.1| ribosomal subunit interface protein [Streptococcus sp. M334]
gi|417850375|ref|ZP_12496284.1| ribosomal subunit interface protein [Streptococcus mitis SK1080]
gi|418976884|ref|ZP_13524723.1| ribosomal subunit interface protein [Streptococcus mitis SK575]
gi|419767407|ref|ZP_14293562.1| ribosomal subunit interface protein [Streptococcus mitis SK579]
gi|288908450|emb|CBJ23292.1| ribosome-associated protein [Streptococcus mitis B6]
gi|307617153|gb|EFN96331.1| ribosomal subunit interface protein [Streptococcus mitis SK321]
gi|307618925|gb|EFN98060.1| ribosomal subunit interface protein [Streptococcus mitis SK564]
gi|307620539|gb|EFN99637.1| ribosomal subunit interface protein [Streptococcus mitis SK597]
gi|321281112|gb|EFX58124.1| ribosomal subunit interface protein [Streptococcus sp. M334]
gi|339452770|gb|EGP65392.1| ribosomal subunit interface protein [Streptococcus mitis SK1080]
gi|383350611|gb|EID28474.1| ribosomal subunit interface protein [Streptococcus mitis SK575]
gi|383353147|gb|EID30772.1| ribosomal subunit interface protein [Streptococcus mitis SK579]
Length = 182
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TSQLFTDALV----EDPNVVQSRVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|134102877|ref|YP_001108538.1| S30AE family protein [Saccharopolyspora erythraea NRRL 2338]
gi|291009678|ref|ZP_06567651.1| S30AE family protein [Saccharopolyspora erythraea NRRL 2338]
gi|133915500|emb|CAM05613.1| S30AE family protein [Saccharopolyspora erythraea NRRL 2338]
Length = 231
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 43/231 (18%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV+EK+ + + ++S DV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRQHVDEKLTR-LERYSKKTIRADVELF-----HERNPRQAKTCQ 54
Query: 155 RCEVTLFTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH-----MK 207
R E+TL K G VRAE A YA++D ++ ++ +LR++ ++ H G+H +
Sbjct: 55 RVEITL--KGKGTPVRAEAAAGDFYAALDAATTKLEGRLRRMCDRRKVHYGQHNPTSVAQ 112
Query: 208 GFNRLKVREPVT----------------------QVVENDADV--QSEEEDDNFVDEVIV 243
+ R VT A+V Q D+ + IV
Sbjct: 113 ATAAMADRTVVTGTSGGRTALLEAPEEEQEEQEESAEYTTAEVPEQRWSSDNGYEPGRIV 172
Query: 244 RMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
R K P+TV +A+ Q+E V HDFY F + ++G ++VY+RK YGVI
Sbjct: 173 REKEHTAEPMTVDQALYQMELVGHDFYLFSDADSGRASVVYRRKGFDYGVI 223
>gi|342164871|ref|YP_004769510.1| hypothetical protein SPPN_11240 [Streptococcus pseudopneumoniae
IS7493]
gi|341934753|gb|AEL11650.1| hypothetical protein SPPN_11240 [Streptococcus pseudopneumoniae
IS7493]
Length = 182
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 109/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATGQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 T-----DALV----EDSNVVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|427396511|ref|ZP_18889270.1| ribosomal subunit interface protein [Enterococcus durans
FB129-CNAB-4]
gi|431742781|ref|ZP_19531665.1| ribosomal subunit interface protein [Enterococcus faecium E2071]
gi|425723181|gb|EKU86072.1| ribosomal subunit interface protein [Enterococcus durans
FB129-CNAB-4]
gi|430607750|gb|ELB45051.1| ribosomal subunit interface protein [Enterococcus faecium E2071]
Length = 183
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T+ ++++VE+KVGK + D V + + + + EVT+
Sbjct: 6 VRGENIEVTEAIRDYVEKKVGKL---ERYFSDAPDATAHVNLKVYTE--KTAKVEVTI-P 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAEE + +YASIDLV ++R++RK K K NR K RE
Sbjct: 60 LPYLVLRAEETSPDLYASIDLVVDKLERQIRKFKTK----------INR-KSRETGMNTA 108
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
E+E++N + IVR K + P+ EA+ Q+ + H+F+ F + ET +I
Sbjct: 109 NAAVLFNEEDENENDSELDIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIFEDAETNGTSI 168
Query: 283 VYKRKAGGYGVI 294
VY+RK G YG+I
Sbjct: 169 VYRRKDGKYGLI 180
>gi|443289003|ref|ZP_21028097.1| Sigma 54 modulation protein / SSU ribosomal protein S30P
[Micromonospora lupini str. Lupac 08]
gi|385887681|emb|CCH16171.1| Sigma 54 modulation protein / SSU ribosomal protein S30P
[Micromonospora lupini str. Lupac 08]
Length = 210
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 28/215 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K V ++ H + +DV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAK-VERYDHKIIRIDVELF-----HERNPRQADHCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHMK-GFNRL 212
R E+T ++ V+RAE Y+++D ++ + R R + GRH
Sbjct: 55 RVEITCVSRG-PVIRAEACTNDFYSALDAAIAKLDTRLRRAADRRRVHRGRHAPISVAAA 113
Query: 213 KVREPVTQVVENDADVQS-------------EEEDDNFVDEVIVRMKFFEMPPLTVSEAI 259
PVT +V S EEE D I R K P+T+ +A+
Sbjct: 114 TADLPVTDLVAAPLSAPSAGARAGTAVAERVEEEHDQPWH--IAREKVHPAEPMTIDDAL 171
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
Q+E V HDFY F+++ETG ++VY+R A YG+I
Sbjct: 172 FQMELVGHDFYLFQDKETGRPSVVYRRHAYDYGII 206
>gi|304391088|ref|ZP_07373040.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315656136|ref|ZP_07909027.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|304325971|gb|EFL93217.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315493138|gb|EFU82738.1| ribosome-associated inhibitor protein Y [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 219
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 107/204 (52%), Gaps = 15/204 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + ++EEK+ K V + + + VDV L+ K PR
Sbjct: 13 MEITVKARNAEIHPNFREYIEEKIAK-VEQLAPRTQRVDVELT-----HEKNPRQADTAE 66
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ DH ++ + L
Sbjct: 67 RIELTVLGKG-PVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELD 125
Query: 214 VREP-VTQVVENDADVQ-SEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
V+ P ++ ++ E ++ D VIVR K E ++V EA++++E V H FY
Sbjct: 126 VQIPEASEAPAAKPPLKLGESREEQLGDSPVIVREKLHESRAMSVEEALDEMELVGHPFY 185
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F + ET + +VY RK YGVI
Sbjct: 186 LFIDSETAQPAVVYHRKGWTYGVI 209
>gi|383939276|ref|ZP_09992451.1| ribosomal subunit interface protein [Streptococcus pseudopneumoniae
SK674]
gi|418968967|ref|ZP_13520184.1| ribosomal subunit interface protein [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383352517|gb|EID30211.1| ribosomal subunit interface protein [Streptococcus pseudopneumoniae
ATCC BAA-960]
gi|383713820|gb|EID69851.1| ribosomal subunit interface protein [Streptococcus pseudopneumoniae
SK674]
Length = 182
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATGQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T V+ ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 TDVLV---------EDSNVVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|384567274|ref|ZP_10014378.1| ribosomal subunit interface protein [Saccharomonospora glauca K62]
gi|384523128|gb|EIF00324.1| ribosomal subunit interface protein [Saccharomonospora glauca K62]
Length = 224
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 35/226 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ ++++G N+E+ + + HV K+ + + ++ V DV L + +R E+
Sbjct: 1 MDIVVKGLNVEVPEHYREHVANKMAR-LERYDRKVIRYDVELFHEPNRR-QAKNCQRVEI 58
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRHM-KGFNRLKVRE 216
T K +VRAE A YA++D + ++ +LR++ ++ DH GR +
Sbjct: 59 T-GKGKGPIVRAEARAGDFYAALDSAINKLESRLRRLHDRRCDHYGRRAPRSLAEATAAG 117
Query: 217 PV----------TQVVENDADVQSEEEDDNFVDEV------------------IVRMKFF 248
PV T V+E A+ +E D DE+ IVR K
Sbjct: 118 PVDTGTSRGRSATAVLEAPAETAVDE--DTATDELEVPGPRWDDGVAPSQPGRIVREKQH 175
Query: 249 EMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+TV +A+ Q+E V HDFY F + ETG+ ++VY+RK YG+I
Sbjct: 176 SAEPMTVDDALYQMELVGHDFYLFNDSETGKPSVVYRRKGFDYGLI 221
>gi|317153188|ref|YP_004121236.1| ribosomal subunit interface protein [Desulfovibrio aespoeensis
Aspo-2]
gi|316943439|gb|ADU62490.1| ribosomal subunit interface protein [Desulfovibrio aespoeensis
Aspo-2]
Length = 179
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 30/198 (15%)
Query: 106 KNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
KN E +D +K + + EKVGK V E D+++++ +F R + +
Sbjct: 8 KNFEPSDHLKGYAQKRFEKVGKYVSD-----AEADLQVNLLVDKF-------RHKADIIL 55
Query: 163 KKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
G+ + A ED+E +Y++ID+V ++ ++R+++EK D + +G N++++
Sbjct: 56 NADGIHISAYEDSEDMYSTIDMVLDKLEAQMRRMREKIKDRTKQARG-NKVQMNFLSYGS 114
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
+ ++ IV +E P++V EA QLE +D++F F N ET +N
Sbjct: 115 IPGESG------------PTIVGTDTYEPKPMSVDEAALQLETLDNEFLVFLNAETEGVN 162
Query: 282 IVYKRKAGGYGVIIPKGN 299
++YKRK G +G+I P GN
Sbjct: 163 VIYKRKNGDFGLIDP-GN 179
>gi|295692543|ref|YP_003601153.1| ribosomal subunit interface protein [Lactobacillus crispatus ST1]
gi|295030649|emb|CBL50128.1| Ribosomal subunit interface protein [Lactobacillus crispatus ST1]
Length = 181
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYR----DRSAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + D IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSE-----------FD--IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAETN 161
Query: 279 EINIVYKRKAGGYGVI 294
++VY+R G YG+I
Sbjct: 162 GTSVVYRRNDGRYGLI 177
>gi|227893183|ref|ZP_04010988.1| ribosome-associated inhibitor protein Y [Lactobacillus ultunensis
DSM 16047]
gi|227865049|gb|EEJ72470.1| ribosome-associated inhibitor protein Y [Lactobacillus ultunensis
DSM 16047]
Length = 181
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 107/198 (54%), Gaps = 24/198 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELSQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH--MKGFNRLKVRE 216
T+ + V+RAEE+ + +Y SID VS ++R++RK K + + R M+ F + E
Sbjct: 57 TI-PLPYLVLRAEENTDDMYRSIDFVSEKLERQIRKYKTRVNRKSREKGMQDFFVEQPEE 115
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ E D IVR K + P+ EAI Q++ ++HDF+ F + E
Sbjct: 116 EEKKPSEFD----------------IVRNKRVSLKPMDPEEAILQMDMLEHDFFVFEDAE 159
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 160 TNGTSVVYRRNDGRYGLI 177
>gi|417020649|ref|ZP_11947318.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus MTCC 5463]
gi|328461866|gb|EGF34088.1| putative phosphate starvation-inducible stress-related protein
[Lactobacillus helveticus MTCC 5463]
Length = 181
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K ++G+N+E+TD ++++VE+++ K + K+ L ++V +++R + EV
Sbjct: 2 LKYNVRGENIEVTDALRSYVEKRLNK-LEKYFELNQDVIAHVNLRVYRDHSA----KVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +Y SID VS ++R++RK K + + R KG V +P
Sbjct: 57 TI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLQDFFVEQPE 114
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+ + D IVR K + P+ EAI Q++ ++HDF+ F + ET
Sbjct: 115 EEEKKPSE-----------FD--IVRNKRVSLKPMDPEEAILQMDMMEHDFFVFEDAETN 161
Query: 279 EINIVYKRKAGGYGVI 294
I++VY+R G YG+I
Sbjct: 162 GISLVYRRNDGRYGLI 177
>gi|254392874|ref|ZP_05008043.1| ribosomal subunit interface protein [Streptomyces clavuligerus ATCC
27064]
gi|326441392|ref|ZP_08216126.1| hypothetical protein SclaA2_10013 [Streptomyces clavuligerus ATCC
27064]
gi|197706530|gb|EDY52342.1| ribosomal subunit interface protein [Streptomyces clavuligerus ATCC
27064]
Length = 242
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 25/216 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + K V +DV +S + + R R
Sbjct: 12 CVDIVVKGRKTEVPERFRKHVAEKLKLDKIQKLDAKVISLDVEVS-KEHNPRQADRSDRV 70
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL---K 213
E+TL ++ V+RAE A YA++DL + ++ +LRK +K + +G RL +
Sbjct: 71 EITLHSRG-PVIRAEAAAGDPYAALDLATGKLEARLRKQHDKRNTR----RGNGRLSAAE 125
Query: 214 VREPVTQVVENDADVQS--EEEDDNFV-------------DEVIVRMKFFEMPPLTVSEA 258
V + V V E +A+ Q EE+ + ++VR K P+T+ +A
Sbjct: 126 VADVVPGVAELNANGQPVVEEQQPPAIPTTRIGSLEVQGEGPLVVREKIHTAAPMTLDQA 185
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+ ++E V HDFY F + ET + ++VY+R A YGVI
Sbjct: 186 LYEMELVGHDFYLFVDSETKQPSVVYRRHAYDYGVI 221
>gi|440698072|ref|ZP_20880443.1| ribosomal subunit interface protein [Streptomyces turgidiscabies
Car8]
gi|440279525|gb|ELP67396.1| ribosomal subunit interface protein [Streptomyces turgidiscabies
Car8]
Length = 232
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + K V +DV +S + + R R E
Sbjct: 1 MDIVVKGRKTEVPERFRKHVAEKLKLDRIQKLDGKVISLDVEVS-KEPNPRQADRSDRVE 59
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
+TL ++ V+RAE A YA++DL + ++ +LRK +K +G RL E
Sbjct: 60 ITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYT----RRGAGRLTAAEV 114
Query: 218 VTQVVE------NDADVQSEEEDDNFVDEV-----------IVRMKFFEMPPLTVSEAIE 260
V + N V E+ D V + IVR K P+T+ +A+
Sbjct: 115 ADHVPDAATLNGNGHPVHEEDADGVPVKRIGSLEVKGEGPLIVREKTHVASPMTLDQALY 174
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 175 EMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 208
>gi|148984509|ref|ZP_01817797.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP3-BS71]
gi|148988852|ref|ZP_01820267.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP6-BS73]
gi|148991934|ref|ZP_01821708.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP9-BS68]
gi|148997992|ref|ZP_01825505.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP11-BS70]
gi|149003070|ref|ZP_01827979.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP14-BS69]
gi|149007750|ref|ZP_01831359.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP18-BS74]
gi|149012820|ref|ZP_01833765.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP19-BS75]
gi|168484337|ref|ZP_02709289.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC1873-00]
gi|168487184|ref|ZP_02711692.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC1087-00]
gi|168489280|ref|ZP_02713479.1| ribosome-associated protein Y [Streptococcus pneumoniae SP195]
gi|168576078|ref|ZP_02721983.1| ribosome-associated protein Y [Streptococcus pneumoniae MLV-016]
gi|169834332|ref|YP_001695562.1| ribosome-associated protein Y [Streptococcus pneumoniae
Hungary19A-6]
gi|182685143|ref|YP_001836890.1| ribosomal subunit interface protein [Streptococcus pneumoniae
CGSP14]
gi|221232907|ref|YP_002512061.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae ATCC 700669]
gi|225855699|ref|YP_002737211.1| ribosome-associated protein Y [Streptococcus pneumoniae JJA]
gi|237650498|ref|ZP_04524750.1| ribosome-associated protein Y [Streptococcus pneumoniae CCRI 1974]
gi|237822399|ref|ZP_04598244.1| ribosome-associated protein Y [Streptococcus pneumoniae CCRI
1974M2]
gi|303254867|ref|ZP_07340952.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae BS455]
gi|303259694|ref|ZP_07345670.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP-BS293]
gi|303262161|ref|ZP_07348106.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP14-BS292]
gi|303264596|ref|ZP_07350515.1| ribosomal subunit interface protein [Streptococcus pneumoniae
BS397]
gi|303266095|ref|ZP_07351989.1| ribosomal subunit interface protein [Streptococcus pneumoniae
BS457]
gi|303268503|ref|ZP_07354297.1| ribosomal subunit interface protein [Streptococcus pneumoniae
BS458]
gi|307068816|ref|YP_003877782.1| hypothetical protein SPAP_2249 [Streptococcus pneumoniae AP200]
gi|307128472|ref|YP_003880503.1| ribosome-associated factor Y [Streptococcus pneumoniae 670-6B]
gi|387627332|ref|YP_006063508.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae INV104]
gi|387758352|ref|YP_006065331.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae OXC141]
gi|387760281|ref|YP_006067259.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae INV200]
gi|415701493|ref|ZP_11458402.1| ribosomal subunit interface protein [Streptococcus pneumoniae
459-5]
gi|415750507|ref|ZP_11478349.1| ribosomal subunit interface protein [Streptococcus pneumoniae SV35]
gi|415753401|ref|ZP_11480383.1| ribosomal subunit interface protein [Streptococcus pneumoniae SV36]
gi|417677926|ref|ZP_12327329.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17545]
gi|417680183|ref|ZP_12329576.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17570]
gi|417687665|ref|ZP_12336932.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA41301]
gi|417697404|ref|ZP_12346579.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA47368]
gi|418077440|ref|ZP_12714669.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47502]
gi|418092829|ref|ZP_12729965.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44452]
gi|418097340|ref|ZP_12734445.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16531]
gi|418108875|ref|ZP_12745908.1| Sigma 54 modulation / S30EA ribosomal family protein [Streptococcus
pneumoniae GA41410]
gi|418111203|ref|ZP_12748218.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA49447]
gi|418113542|ref|ZP_12750538.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41538]
gi|418124578|ref|ZP_12761505.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44378]
gi|418126857|ref|ZP_12763759.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44511]
gi|418129118|ref|ZP_12766007.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP170]
gi|418133664|ref|ZP_12770530.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11304]
gi|418138319|ref|ZP_12775153.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11663]
gi|418140546|ref|ZP_12777367.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13338]
gi|418144813|ref|ZP_12781608.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13494]
gi|418147461|ref|ZP_12784233.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13637]
gi|418156179|ref|ZP_12792900.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16242]
gi|418160950|ref|ZP_12797646.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17227]
gi|418163319|ref|ZP_12799997.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17328]
gi|418168205|ref|ZP_12804851.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19077]
gi|418177027|ref|ZP_12813614.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41437]
gi|418179351|ref|ZP_12815928.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41565]
gi|418181573|ref|ZP_12818138.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41688]
gi|418183756|ref|ZP_12820310.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43380]
gi|418185976|ref|ZP_12822511.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47283]
gi|418190440|ref|ZP_12826949.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47373]
gi|418192653|ref|ZP_12829152.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47388]
gi|418196879|ref|ZP_12833349.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47688]
gi|418201184|ref|ZP_12837623.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47976]
gi|418215412|ref|ZP_12842143.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA54644]
gi|418219973|ref|ZP_12846634.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP127]
gi|418222266|ref|ZP_12848915.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47751]
gi|418226580|ref|ZP_12853204.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP112]
gi|418233186|ref|ZP_12859769.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07228]
gi|418235393|ref|ZP_12861966.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA08780]
gi|418236313|ref|ZP_12862881.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19690]
gi|418239759|ref|ZP_12866305.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419423892|ref|ZP_13964100.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43264]
gi|419443609|ref|ZP_13983629.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13224]
gi|419458751|ref|ZP_13998690.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02254]
gi|419461051|ref|ZP_14000973.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02270]
gi|419463370|ref|ZP_14003269.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02714]
gi|419467882|ref|ZP_14007760.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA05248]
gi|419472083|ref|ZP_14011939.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07914]
gi|419474293|ref|ZP_14014138.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13430]
gi|419481021|ref|ZP_14020822.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19101]
gi|419485426|ref|ZP_14025197.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43257]
gi|419489993|ref|ZP_14029738.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44386]
gi|419494328|ref|ZP_14034050.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47210]
gi|419500721|ref|ZP_14040412.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47597]
gi|419504930|ref|ZP_14044593.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47760]
gi|419509291|ref|ZP_14048939.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA49542]
gi|419511392|ref|ZP_14051030.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP141]
gi|419513597|ref|ZP_14053227.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA05578]
gi|419517810|ref|ZP_14057422.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02506]
gi|419522162|ref|ZP_14061753.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA05245]
gi|419524718|ref|ZP_14064287.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA13723]
gi|419526971|ref|ZP_14066522.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA14373]
gi|419531252|ref|ZP_14070775.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA40028]
gi|421212056|ref|ZP_15669033.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070035]
gi|421216268|ref|ZP_15673185.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070109]
gi|421221390|ref|ZP_15678221.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070425]
gi|421223646|ref|ZP_15680423.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070531]
gi|421232901|ref|ZP_15689537.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2080076]
gi|421237301|ref|ZP_15693892.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2071004]
gi|421239530|ref|ZP_15696091.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2071247]
gi|421246031|ref|ZP_15702526.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2081685]
gi|421271759|ref|ZP_15722606.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR55]
gi|421279971|ref|ZP_15730774.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17301]
gi|421284350|ref|ZP_15735132.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA04216]
gi|421290773|ref|ZP_15741520.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA54354]
gi|421295151|ref|ZP_15745869.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA56113]
gi|421296955|ref|ZP_15747658.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA58581]
gi|421299662|ref|ZP_15750342.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA60080]
gi|421300194|ref|ZP_15750865.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA19998]
gi|421306168|ref|ZP_15756819.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA62331]
gi|421315059|ref|ZP_15765643.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA47562]
gi|444381636|ref|ZP_21179842.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS8106]
gi|444385310|ref|ZP_21183389.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS8203]
gi|147756002|gb|EDK63045.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP11-BS70]
gi|147758811|gb|EDK65807.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP14-BS69]
gi|147760745|gb|EDK67717.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP18-BS74]
gi|147763251|gb|EDK70190.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP19-BS75]
gi|147923286|gb|EDK74400.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP3-BS71]
gi|147925663|gb|EDK76739.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP6-BS73]
gi|147928983|gb|EDK79994.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP9-BS68]
gi|168996834|gb|ACA37446.1| ribosome-associated protein Y [Streptococcus pneumoniae
Hungary19A-6]
gi|172042421|gb|EDT50467.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC1873-00]
gi|182630477|gb|ACB91425.1| ribosomal subunit interface protein [Streptococcus pneumoniae
CGSP14]
gi|183569893|gb|EDT90421.1| ribosome-associated protein Y [Streptococcus pneumoniae CDC1087-00]
gi|183572268|gb|EDT92796.1| ribosome-associated protein Y [Streptococcus pneumoniae SP195]
gi|183578074|gb|EDT98602.1| ribosome-associated protein Y [Streptococcus pneumoniae MLV-016]
gi|220675369|emb|CAR69968.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae ATCC 700669]
gi|225724091|gb|ACO19944.1| ribosome-associated protein Y [Streptococcus pneumoniae JJA]
gi|301795118|emb|CBW37588.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae INV104]
gi|301800941|emb|CBW33600.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae OXC141]
gi|301802870|emb|CBW35648.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae INV200]
gi|302598138|gb|EFL65199.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae BS455]
gi|302636801|gb|EFL67291.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP14-BS292]
gi|302639246|gb|EFL69705.1| ribosomal subunit interface protein [Streptococcus pneumoniae
SP-BS293]
gi|302642004|gb|EFL72357.1| ribosomal subunit interface protein [Streptococcus pneumoniae
BS458]
gi|302644399|gb|EFL74652.1| ribosomal subunit interface protein [Streptococcus pneumoniae
BS457]
gi|302645966|gb|EFL76194.1| ribosomal subunit interface protein [Streptococcus pneumoniae
BS397]
gi|306410353|gb|ADM85780.1| hypothetical protein SPAP_2249 [Streptococcus pneumoniae AP200]
gi|306485534|gb|ADM92403.1| ribosome-associated factor Y [Streptococcus pneumoniae 670-6B]
gi|332071287|gb|EGI81782.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA17545]
gi|332071475|gb|EGI81969.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA41301]
gi|332071648|gb|EGI82141.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17570]
gi|332198831|gb|EGJ12913.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA47368]
gi|353745614|gb|EHD26283.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47502]
gi|353761499|gb|EHD42066.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44452]
gi|353765963|gb|EHD46504.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16531]
gi|353775332|gb|EHD55813.1| Sigma 54 modulation / S30EA ribosomal family protein [Streptococcus
pneumoniae GA41410]
gi|353780314|gb|EHD60773.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA49447]
gi|353781753|gb|EHD62194.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41538]
gi|353794190|gb|EHD74548.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44378]
gi|353794393|gb|EHD74750.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44511]
gi|353797168|gb|EHD77505.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP170]
gi|353803900|gb|EHD84190.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11304]
gi|353807279|gb|EHD87551.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13494]
gi|353810541|gb|EHD90792.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13637]
gi|353818368|gb|EHD98567.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA16242]
gi|353820215|gb|EHE00403.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17227]
gi|353825454|gb|EHE05619.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17328]
gi|353836124|gb|EHE16212.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19077]
gi|353838986|gb|EHE19062.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41437]
gi|353840865|gb|EHE20927.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41565]
gi|353841289|gb|EHE21346.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA41688]
gi|353846569|gb|EHE26598.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47283]
gi|353846774|gb|EHE26802.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43380]
gi|353851699|gb|EHE31690.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47373]
gi|353854487|gb|EHE34465.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47388]
gi|353858039|gb|EHE38000.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47688]
gi|353862617|gb|EHE42548.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47976]
gi|353867702|gb|EHE47593.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA54644]
gi|353872039|gb|EHE51908.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP127]
gi|353872661|gb|EHE52525.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47751]
gi|353879220|gb|EHE59047.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP112]
gi|353884764|gb|EHE64559.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07228]
gi|353885116|gb|EHE64906.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA08780]
gi|353890794|gb|EHE70554.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|353892545|gb|EHE72293.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19690]
gi|353899676|gb|EHE75245.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA11663]
gi|353904392|gb|EHE79869.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13338]
gi|379528747|gb|EHY94001.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02254]
gi|379528924|gb|EHY94177.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02270]
gi|379529093|gb|EHY94345.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02714]
gi|379536149|gb|EHZ01340.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA05245]
gi|379542304|gb|EHZ07462.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA05248]
gi|379543472|gb|EHZ08622.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA07914]
gi|379549160|gb|EHZ14271.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13224]
gi|379549362|gb|EHZ14472.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA13430]
gi|379554942|gb|EHZ20014.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA13723]
gi|379555577|gb|EHZ20644.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA14373]
gi|379569187|gb|EHZ34161.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA19101]
gi|379570080|gb|EHZ35045.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA40028]
gi|379580199|gb|EHZ45094.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43257]
gi|379584314|gb|EHZ49182.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA43264]
gi|379584979|gb|EHZ49842.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA44386]
gi|379591590|gb|EHZ56414.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47210]
gi|379597833|gb|EHZ62630.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47597]
gi|379604116|gb|EHZ68878.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA47760]
gi|379609582|gb|EHZ74320.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA49542]
gi|379630472|gb|EHZ95058.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae NP141]
gi|379632884|gb|EHZ97454.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA05578]
gi|379637460|gb|EIA02016.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA02506]
gi|381309048|gb|EIC49891.1| ribosomal subunit interface protein [Streptococcus pneumoniae SV36]
gi|381312681|gb|EIC53476.1| ribosomal subunit interface protein [Streptococcus pneumoniae
459-5]
gi|381316357|gb|EIC57107.1| ribosomal subunit interface protein [Streptococcus pneumoniae SV35]
gi|395571535|gb|EJG32154.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070035]
gi|395578657|gb|EJG39171.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070109]
gi|395584378|gb|EJG44771.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070425]
gi|395586105|gb|EJG46483.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2070531]
gi|395593136|gb|EJG53388.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2080076]
gi|395599664|gb|EJG59829.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2071247]
gi|395599878|gb|EJG60039.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2071004]
gi|395606145|gb|EJG66254.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2081685]
gi|395877199|gb|EJG88269.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae GA17301]
gi|395877318|gb|EJG88387.1| ribosomal subunit interface domain protein [Streptococcus
pneumoniae SPAR55]
gi|395879364|gb|EJG90424.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA04216]
gi|395885677|gb|EJG96699.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA54354]
gi|395891508|gb|EJH02503.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA56113]
gi|395892529|gb|EJH03519.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA58581]
gi|395898001|gb|EJH08951.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA60080]
gi|395899618|gb|EJH10557.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA19998]
gi|395903852|gb|EJH14775.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA62331]
gi|395911643|gb|EJH22508.1| ribosomal subunit interface protein [Streptococcus pneumoniae
GA47562]
gi|429316968|emb|CCP36697.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae SPN034156]
gi|429320319|emb|CCP33661.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae SPN034183]
gi|429322139|emb|CCP35635.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae SPN994039]
gi|429323959|emb|CCP31676.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae SPN994038]
gi|444250590|gb|ELU57069.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS8203]
gi|444253888|gb|ELU60335.1| ribosomal subunit interface protein [Streptococcus pneumoniae
PCS8106]
Length = 182
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TGQLFTDALV----EDSNVVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|326792474|ref|YP_004310295.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
lentocellum DSM 5427]
gi|326543238|gb|ADZ85097.1| sigma 54 modulation protein/ribosomal protein S30EA [Clostridium
lentocellum DSM 5427]
Length = 177
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+ELT ++N VEEK+ K + K+ + + LSV K I E+
Sbjct: 1 MKYNISGKNIELTAALENAVEEKIVK-LDKYFNDSVMAQITLSVE-----KLSHI--IEI 52
Query: 159 TL-FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
T+ F V+RAE + + +Y +D ++I++++ K K + D R+
Sbjct: 53 TIPFNG--SVLRAEVEGKNMYNIMDDAVAVIEKQINKYKNRLRDKHRN------------ 98
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
V E E+E+D V I + K F + P++ EA+ Q+E V H+F+ + + ET
Sbjct: 99 --TVSEFTPSFLEEDENDG-VTLKIEKTKKFAIKPMSAEEAVLQMELVGHNFFVYLDGET 155
Query: 278 GEINIVYKRKAGGYGVIIP 296
E+N+VYKRK G YG+I P
Sbjct: 156 EEVNVVYKRKNGTYGLIEP 174
>gi|315304740|ref|ZP_07874923.1| ribosome-associated factor Y [Listeria ivanovii FSL F6-596]
gi|313626884|gb|EFR95834.1| ribosome-associated factor Y [Listeria ivanovii FSL F6-596]
Length = 187
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 17/198 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ +VE+K+ K + D + V + + + EV
Sbjct: 2 LKYNIRGENIEVTEPXXXYVEKKIDKL---ERYFTETPDANVHVNLKVYSD--KNAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ + V+RAEE + +YASIDL+ ++R++RK K K + R KG R
Sbjct: 57 TI-PLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD-KGAER------- 107
Query: 219 TQVVENDADVQSEEEDD--NFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+D + + ED+ +F D IVR K F + P+ EA+ Q+ + H FY + + E
Sbjct: 108 DYFAYSDVNGSTPPEDNEGDF-DLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAE 166
Query: 277 TGEINIVYKRKAGGYGVI 294
T NIVY RK G YG+I
Sbjct: 167 TNGTNIVYSRKDGKYGLI 184
>gi|114764080|ref|ZP_01443319.1| ribosomal subunit interface protein, putative [Pelagibaca
bermudensis HTCC2601]
gi|114543438|gb|EAU46453.1| ribosomal subunit interface protein, putative [Roseovarius sp.
HTCC2601]
Length = 187
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 11/194 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK +++ + ++ HV+ ++G + K++ R D ++ F K CEVT+
Sbjct: 5 ITGKQIDIGEALQTHVKNELGTVLEKYA--FRPTDATIT-----FSKSAHEYICEVTVHL 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
A++ A +YA+ D VS + ++LR+ K + DH H +++ + ++
Sbjct: 58 STGLTSSAKDKATEIYAAFDGVSEKVDKQLRRYKRRLKDH--HKDRAEPVELFGAASYIL 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+A+ +E D + +IV ++P LTV EA+ Q+E FRNE+ +N+
Sbjct: 116 AGEAESHDDEPDS--LQPIIVAEMETQIPSLTVGEAVMQMELAGAPVLVFRNEKKDGVNV 173
Query: 283 VYKRKAGGYGVIIP 296
VY+R G G I P
Sbjct: 174 VYRRDDGNIGWIDP 187
>gi|222055374|ref|YP_002537736.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter
daltonii FRC-32]
gi|221564663|gb|ACM20635.1| sigma 54 modulation protein/ribosomal protein S30EA [Geobacter
daltonii FRC-32]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 24/193 (12%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
++++ +D +K++ EEK+ + V K+ + + F +IR T K
Sbjct: 8 RHMDPSDALKSYTEEKLER-VKKY--------IDEPIVAQVFLTVEKIRHSADVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ--VVE 223
++A E+ +YA++D V I+R+LR+ KE+ H RE + Q +VE
Sbjct: 59 ITIKAAEETNDMYAAVDAVVDKIERQLRRYKERIKAHKPATDS------RERIVQKSIVE 112
Query: 224 NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIV 283
++ Q +E VI+R K F + P++V EA+ Q++ + DF + T IN++
Sbjct: 113 AESIEQQKEP-------VIIRTKTFSLKPMSVEEAVMQMDLLHKDFLVYTEAATESINVI 165
Query: 284 YKRKAGGYGVIIP 296
Y+RK G YG+I P
Sbjct: 166 YRRKDGNYGLIEP 178
>gi|383788717|ref|YP_005473286.1| putative ribosome-associated protein [Caldisericum exile AZM16c01]
gi|381364354|dbj|BAL81183.1| putative ribosome-associated protein [Caldisericum exile AZM16c01]
Length = 173
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 110/201 (54%), Gaps = 30/201 (14%)
Query: 99 VKLIIQGKNLE-LTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS-VRGGEFGKGPRIRRC 156
+++ I K +E L D + +++K+GK + K+ +++ +V +S VRG I
Sbjct: 1 MEITITAKGIEKLPDFTEEEIKKKIGK-LEKYFDNIQQANVVISKVRG--------IFEM 51
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+F + ++R + ++D V ++ +++K++++ +KG R+ E
Sbjct: 52 EVTIFASQK-IIRGVGKGSLIDEALDNVVEKLETQVKKLRDR-------LKGEKRISKEE 103
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ EEE+ F I ++K F + P+++ EA+ Q+E + HDF+ FR+EE
Sbjct: 104 IFGNI---------EEEESEFPR--ITKIKTFPVKPMSLEEAMLQIELLGHDFFIFRDEE 152
Query: 277 TGEINIVYKRKAGGYGVIIPK 297
T EIN++Y+RK G YG+I P+
Sbjct: 153 TNEINVLYRRKDGNYGLIKPQ 173
>gi|289449672|ref|YP_003474818.1| ribosomal subunit interface protein [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184219|gb|ADC90644.1| ribosomal subunit interface protein [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 180
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 28/202 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR--GGEFGKGPRIRRC 156
+ + I GK + + + + N V K+ K + + + V + VR G + +C
Sbjct: 1 MNITITGKGMNIGEQLHNRVVSKLSKF---NRYFGDDAKVSVKVRPEGDD--------KC 49
Query: 157 -EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
E+T+ +H + R+E A V+ ++DL + ++R++RK K K + ++ + +K
Sbjct: 50 MEITIRVSRH-IYRSEAVAGDVFTALDLAMAGMERQIRKQKSKIE---KKIREYAYMK-- 103
Query: 216 EPVTQVVE-NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
E + + E D D E D I++ K FE+ +T EA Q+E + H F+ F N
Sbjct: 104 EALQKAAEYTDTDCSPE-------DSSIIKHKQFELAEMTADEAALQMELIGHSFHLFLN 156
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
ETG++ +VYKRK G YG+I P
Sbjct: 157 SETGKVALVYKRKDGNYGLIEP 178
>gi|455649585|gb|EMF28389.1| hypothetical protein H114_14401 [Streptomyces gancidicus BKS 13-15]
Length = 230
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 34/219 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 1 MDIVVKGRKTEVPERFRKHVAEKLNLEKIQKLDGKVMSLDVEVS-KEPNPRQADRCDRVE 59
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + +LRK +H K F+R R
Sbjct: 60 ITLRSRG-PVIRAEASASDPYAALDLAAEKLDARLRK---------QHDKRFSRRGARRI 109
Query: 217 PVTQVVE--------NDADVQSEEEDDNFV-------------DEVIVRMKFFEMPPLTV 255
P +V + N + + +E + V ++VR K P+T+
Sbjct: 110 PAAEVPDHVPGVATLNGSGASTAQEQEQAVPTKKIGSLEVQGDGPLVVREKTHVAAPMTL 169
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 170 DQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 208
>gi|298345532|ref|YP_003718219.1| putative ribosome-associated inhibitor protein Y [Mobiluncus
curtisii ATCC 43063]
gi|298235593|gb|ADI66725.1| possible ribosome-associated inhibitor protein Y [Mobiluncus
curtisii ATCC 43063]
Length = 219
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 107/204 (52%), Gaps = 15/204 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+++ ++ +N E+ + ++EEK+ K V + + + VDV L+ K PR
Sbjct: 13 MEITVKARNAEIHPDFREYIEEKIAK-VEQLAPRTQRVDVELT-----HEKNPRQADTAE 66
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRH-MKGFNRLK 213
R E+T+ K VVRAE + YA++D+ + + +LR+ +++ DH ++ + L
Sbjct: 67 RIELTVLGKG-PVVRAEASSSDRYAAVDIAAGKLFERLRRARDRAKDHRKYEIPPDVELD 125
Query: 214 VREP-VTQVVENDADVQ-SEEEDDNFVDE-VIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
V+ P ++ ++ E ++ D VIVR K E ++V EA++++E V H FY
Sbjct: 126 VQIPEASEAPAAKPPLKLGESREEQLGDSPVIVREKLHESRAMSVEEALDEMELVGHPFY 185
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F + ET + +VY RK YGVI
Sbjct: 186 LFIDSETAQPAVVYHRKGWTYGVI 209
>gi|170017878|ref|YP_001728797.1| ribosome-associated protein Y (PSrp-1) [Leuconostoc citreum KM20]
gi|414596230|ref|ZP_11445806.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE E16]
gi|421876076|ref|ZP_16307636.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C10]
gi|421878455|ref|ZP_16309935.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C11]
gi|169804735|gb|ACA83353.1| Ribosome-associated protein Y (PSrp-1) [Leuconostoc citreum KM20]
gi|372558111|emb|CCF23756.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C10]
gi|390447582|emb|CCF26055.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE C11]
gi|390483163|emb|CCF27867.1| Ribosomal subunit interface protein [Leuconostoc citreum LBAE E16]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 109/192 (56%), Gaps = 20/192 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+ +TD ++++VE+++ K + ++ + +++R K + EVT+
Sbjct: 6 VRGENIAVTDALRDYVEKRLTKL---NRYIEEKSSANVNLRTY---KSDNSGKAEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE+ +YA++D VS ++R++RK K K NR K RE + +
Sbjct: 60 P-YVVLRAEDTNPDLYAAVDAVSEKLERQIRKYKTK----------INR-KSRETGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
++ ++ + + DD + IVR K ++ P++ EA Q++ + H+F+ FR+ +T ++
Sbjct: 108 DSKNEIPATDSDDEALQ--IVRTKQVDLKPMSPEEAALQMDLLGHNFFIFRDADTNTDSV 165
Query: 283 VYKRKAGGYGVI 294
+YKR+ G YG++
Sbjct: 166 IYKRQDGKYGLL 177
>gi|315917285|ref|ZP_07913525.1| sigma(54) modulation protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317058622|ref|ZP_07923107.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_5R]
gi|313684298|gb|EFS21133.1| sigma(54) modulation protein [Fusobacterium sp. 3_1_5R]
gi|313691160|gb|EFS27995.1| sigma(54) modulation protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 180
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+KL IQGK LELTD +K + E K K H ++ E++V LS ++ G +
Sbjct: 1 MKLSIQGKRLELTDAIKAYAERKFEKVEKFHDGIL-EINVTLSAVKLKTGNY------HS 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + ++A E +Y +ID + ++ +L+K K+K +G K
Sbjct: 54 AEVLAYLSGK-TLKATSTEEDLYFAIDQAADALEIQLKKHKDKNKRANSQKRG-KSWKF- 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P + VV N +E+ V ++ + P+++ EA+ QLE ++ F+ F++
Sbjct: 111 DPESGVVTN-------QEERRMVKVLLPK------KPMSMEEALLQLEVLEKQFFAFKSL 157
Query: 276 ETGEINIVYKRKAGGYGVII 295
ETG+++IVYKRK G YG I+
Sbjct: 158 ETGKMSIVYKRKDGDYGYIV 177
>gi|421767330|ref|ZP_16204084.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
gi|407624183|gb|EKF50965.1| Ribosomal subunit interface protein [Lactococcus garvieae DCC43]
Length = 185
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 23/200 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+ +N+E+TD++++++E+KVGK + K+ + EV ++++ + + EV
Sbjct: 2 IKFNIRAENVEITDSIRSYIEDKVGK-LNKYFNDGHEVTAYVNIKS----YSDKRYKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL-KVREP 217
T+ K+ +RAE A+ + ASID V ++R++RK K + NR K P
Sbjct: 57 TV-PAKNVTLRAENMAQDILASIDFVEEKLERQIRKYKTR----------VNRKSKANVP 105
Query: 218 VTQVVEND---ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
++ E EDD IVR K ++ P+ EA+ Q++ + HDFY F +
Sbjct: 106 TGMAFGDEFAPLAAADEVEDDKVK---IVRTKRIDLKPMDAEEAVLQMDMLGHDFYVFLD 162
Query: 275 EETGEINIVYKRKAGGYGVI 294
T +IVY+R G G+I
Sbjct: 163 AYTESTSIVYRRTDGNIGLI 182
>gi|405761820|ref|YP_006702416.1| sigma-54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae SPNA45]
gi|404278709|emb|CCM09342.1| sigma 54 modulation protein / S30EA ribosomal protein
[Streptococcus pneumoniae SPNA45]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V IVR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TGQLFTDALV----EDSNVVRSKIVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|423684071|ref|ZP_17658910.1| hypothetical protein MUY_03924 [Bacillus licheniformis WX-02]
gi|383440845|gb|EID48620.1| hypothetical protein MUY_03924 [Bacillus licheniformis WX-02]
Length = 186
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 20/197 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+T ++ HVE+K+GK + VD + V + + EVT+
Sbjct: 5 VRGENIEVTPALREHVEKKIGKL---ERYFENNVDAIVHVNLKFYNDQES--KVEVTIPM 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE---PVT 219
+ RAE E +Y +IDL ++ ++R++RK K K NR K RE P
Sbjct: 60 TDLSL-RAEVHHEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREKGSPKH 107
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
E + + +ED +VR K F + P+ EAI Q+ + H F+ F N ET
Sbjct: 108 VFAEGNGIGTAVQEDIEDEQPQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVFTNAETNL 167
Query: 280 INIVYKRKAGGYGVIIP 296
N+VY+R G YG+I P
Sbjct: 168 TNVVYRRNDGKYGLIEP 184
>gi|95928723|ref|ZP_01311469.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfuromonas
acetoxidans DSM 684]
gi|95135068|gb|EAT16721.1| sigma 54 modulation protein/ribosomal protein S30EA [Desulfuromonas
acetoxidans DSM 684]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 105/193 (54%), Gaps = 20/193 (10%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR-CEVTLFTKK 164
++++ ++ V+N+VEEK+ + V K+ + V L+V +IR EV L K
Sbjct: 8 RHMDTSEPVRNYVEEKLVR-VNKYIEEPIDAQVVLTVEK-------KIRHNAEVALVAKG 59
Query: 165 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
+ + E + +YA+ID V ++R+L++ KEK H KG R +T+ +
Sbjct: 60 VTIKASAEVTDDMYAAIDAVVDKLERQLKRYKEKLKRHSSR-KGKER-----DLTKTIYE 113
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
A V+ + + ++R F + P++V EA+ Q++ + +F F +++T E+N++Y
Sbjct: 114 AASVE-----EGHPEPKVIRSHSFSIKPMSVDEAVMQMDLLQKEFLVFTDDDTEEVNVIY 168
Query: 285 KRKAGGYGVIIPK 297
+RK G YG+I+PK
Sbjct: 169 RRKDGNYGLIVPK 181
>gi|50954329|ref|YP_061617.1| sigma-54 modulation protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950811|gb|AAT88512.1| sigma-54 modulation protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 232
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 114/237 (48%), Gaps = 38/237 (16%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV---DVRLSVRGGEFGKGPRIRRCEVT 159
I G+NL +TD + + EK K +HL ++++S + G R E+T
Sbjct: 5 IVGRNLGITDRFREYAAEKSEKV----AHLAERAISFEIKVSRHNEKLGTQNGDDRVELT 60
Query: 160 LFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDH-GRH---------MKGF 209
L + VR+E YA+ D+ + ++R+ K++ H G+H +GF
Sbjct: 61 LVGPR-ATVRSEATGTDKYAAFDIALGKLLERVRRAKDRRKVHRGQHRPTSLREASTQGF 119
Query: 210 NRL-----------KVREPVTQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSE 257
+ + +VR + DA+ V +EEE V++R K F P+TV +
Sbjct: 120 SAVGLSAASVAVLEQVRTGSVPAIAADAEPVGAEEE----YCPVVIRRKVFASVPMTVDD 175
Query: 258 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETAS 314
A+ +E V HDFY F ++ET ++VY+RK YGVI + A++L+ EV TAS
Sbjct: 176 ALYYMELVGHDFYLFVDQETKRPSVVYRRKGWDYGVI--SLDDDAEELQ--EVATAS 228
>gi|407277816|ref|ZP_11106286.1| hypothetical protein RhP14_15008 [Rhodococcus sp. P14]
Length = 224
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 16/209 (7%)
Query: 93 DGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR 152
+GP + V +++G+N+E+ D + +V EK+ + + + + DV L +
Sbjct: 22 NGPRADV--VVKGRNVEVPDHFRVYVSEKLAR-LERFDPTIFLFDVELQHERNR-RQLKS 77
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNR 211
+R E+T K VVRAE A++ YA+ + V+ ++ +LR+ K++ HG
Sbjct: 78 CQRVEITARAKG-PVVRAEASADSFYAAFESVTDKLEARLRRTKDRRKVHHGEKTP---- 132
Query: 212 LKVREPVTQVVENDA-DVQSEEEDDNFVDEV-----IVRMKFFEMPPLTVSEAIEQLENV 265
+ V E ++ +D+ + E D + E IVR K P+TV +A+ ++E V
Sbjct: 133 VSVAEATAELARDDSLGISPEISLDQYEPEPSGPGRIVRTKEHTAEPMTVDDALYEMELV 192
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVI 294
HDFY F ++ET ++VY+R A YG+I
Sbjct: 193 GHDFYLFHDKETDSPSVVYRRHAFDYGLI 221
>gi|270291859|ref|ZP_06198074.1| ribosomal subunit interface protein [Streptococcus sp. M143]
gi|358465198|ref|ZP_09175149.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
058 str. F0407]
gi|417916973|ref|ZP_12560539.1| ribosomal subunit interface protein [Streptococcus mitis bv. 2 str.
SK95]
gi|417934245|ref|ZP_12577565.1| ribosomal subunit interface protein [Streptococcus mitis bv. 2 str.
F0392]
gi|270279387|gb|EFA25229.1| ribosomal subunit interface protein [Streptococcus sp. M143]
gi|340770815|gb|EGR93330.1| ribosomal subunit interface protein [Streptococcus mitis bv. 2 str.
F0392]
gi|342827720|gb|EGU62102.1| ribosomal subunit interface protein [Streptococcus mitis bv. 2 str.
SK95]
gi|357065956|gb|EHI76126.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
058 str. F0407]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 111/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++N+V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRNYVVSKLEK-IEKYFQPEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N V +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 106 TSQLFTDALV----EDANVVQPKVVRSKQIDLKPMDLEEALLQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVLYRREDGEVGLL 177
>gi|302551828|ref|ZP_07304170.1| ribosomal subunit interface protein [Streptomyces viridochromogenes
DSM 40736]
gi|302469446|gb|EFL32539.1| ribosomal subunit interface protein [Streptomyces viridochromogenes
DSM 40736]
Length = 277
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 27/217 (12%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
V ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 45 VDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRCDRVE 103
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + ++ +LR+ +K +G R+ E
Sbjct: 104 ITLHSRG-PVIRAEAAASDPYAALDLAAEKLEARLRRQHDKRFSR----RGSRRISAAEV 158
Query: 217 ----PVTQVVEND--ADVQSEEEDDNFV-------------DEVIVRMKFFEMPPLTVSE 257
P + + A EEE + V ++VR K P+T+ +
Sbjct: 159 ADHVPGVATLNGNGLAAAPQEEEPEAAVPTKKIGSLEVQGDGPIVVREKTHVAAPMTLDQ 218
Query: 258 AIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 219 ALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 255
>gi|390935742|ref|YP_006393247.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389571243|gb|AFK87648.1| sigma 54 modulation protein/ribosomal protein S30EA
[Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 179
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 74/131 (56%), Gaps = 15/131 (11%)
Query: 167 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQ-VVEND 225
+ RAEE ++ +YASID V +++++ K K K ++ F +R V Q ++ND
Sbjct: 61 IFRAEEVSDDMYASIDNVVDKLEKQILKYKTKLKNN------FTPDSIRFDVQQDYIKND 114
Query: 226 ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 285
+SE E +V+ K F + P++V EAI Q+ + H+F+ F N ET + +VYK
Sbjct: 115 VQDESEFE--------VVKTKRFAVKPMSVQEAILQMNLLGHNFFVFTNSETDDFTVVYK 166
Query: 286 RKAGGYGVIIP 296
RK G YG+I P
Sbjct: 167 RKDGKYGLIEP 177
>gi|340755689|ref|ZP_08692357.1| sigma(54) modulation protein [Fusobacterium sp. D12]
gi|421500529|ref|ZP_15947527.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313686336|gb|EFS23171.1| sigma(54) modulation protein [Fusobacterium sp. D12]
gi|402268151|gb|EJU17536.1| ribosomal subunit interface protein [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 180
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 26/200 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLS---VRGGEFGKGPRIRR 155
+KL IQGK L LTD +K + E K K H ++ E++V LS ++ G +
Sbjct: 1 MKLSIQGKRLVLTDAIKAYAERKFEKVEKFHDGIL-EINVTLSAVKLKTGNY------HS 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EV + ++A E +Y +ID + ++ +L+K K+K + KG K
Sbjct: 54 AEVLAYLSGK-TLKATSTEEDLYFAIDQAADALEVQLKKHKDK-NKRANSQKGGKSWKF- 110
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+P + +V N +E+ V ++ + P+++ EA+ QLE +D F+ F++
Sbjct: 111 DPESGIVTN-------QEERRMVKVLLPK------KPMSMEEALLQLEVLDKQFFAFKSL 157
Query: 276 ETGEINIVYKRKAGGYGVII 295
ETG+++IVYKRK G YG I+
Sbjct: 158 ETGKMSIVYKRKDGDYGYIL 177
>gi|148265010|ref|YP_001231716.1| sigma-54 modulation protein/ribosomal protein S30EA [Geobacter
uraniireducens Rf4]
gi|146398510|gb|ABQ27143.1| SSU ribosomal protein S30P [Geobacter uraniireducens Rf4]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+++E +D +K++ EEK+ + V K+ + + F +IR T K
Sbjct: 8 RHMEPSDPLKSYAEEKLER-VKKY--------IDEPIVAQVFLTVEKIRHSAEVTITAKG 58
Query: 166 GVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEND 225
++A E+ +YA++D V I+R+LR+ KE+ H RL + +VE +
Sbjct: 59 ITMKASEETNDMYAAVDAVVDKIERQLRRYKERIKAHKPATDTRERLVQK----SIVEAE 114
Query: 226 ADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYK 285
+ Q E VI+R K F + P++V EA+ Q++ + DF + T IN++Y+
Sbjct: 115 SIEQQREP-------VIIRTKTFSLKPMSVEEAVMQMDLLHKDFLVYTEAATENINVIYR 167
Query: 286 RKAGGYGVIIP 296
RK G YG+I P
Sbjct: 168 RKDGNYGLIEP 178
>gi|184200530|ref|YP_001854737.1| hypothetical protein KRH_08840 [Kocuria rhizophila DC2201]
gi|183580760|dbj|BAG29231.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 231
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 27/226 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++L IQG+N+ L D K +VEEK + + V+ ++V+++ G G + R E+
Sbjct: 1 MELNIQGRNVTLPDRFKEYVEEK-SERFQQLGDKVQSIEVKVTKDNG--ASGHQGMRVEI 57
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR-LKVREP 217
T+ + V+RAE ++ +A+ D + +LR+ +++ H G R + V E
Sbjct: 58 TV-VGRGPVIRAEARSDDKFAAFDEAYGKLVEQLRRARDRRK---IHRAGHQRPIAVHEA 113
Query: 218 VTQ--VVENDA--------DVQSEEEDDNFVDE---------VIVRMKFFEMPPLTVSEA 258
VV + SE ED F E V +R K F +TV EA
Sbjct: 114 TGSLPVVPSSGSFTGFDSPQALSEAEDAAFDTEYPLSDAPTPVEIRRKRFPAHQITVDEA 173
Query: 259 IEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKK 304
++Q+E V HDF+ F ++ET E + VY+RK YGVI +G+A++
Sbjct: 174 VDQMELVGHDFFIFVDKETQEPSAVYRRKGWQYGVISLSQDGRAEE 219
>gi|323140699|ref|ZP_08075620.1| ribosomal subunit interface protein [Phascolarctobacterium
succinatutens YIT 12067]
gi|322414823|gb|EFY05621.1| ribosomal subunit interface protein [Phascolarctobacterium
succinatutens YIT 12067]
Length = 195
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+++T +K +VE+K+ K V K V ++ L V KG I E+T+
Sbjct: 21 VKGRNIDVTPALKEYVEKKITK-VTKQFKTVGDISAVLKVE-----KGNHI--VEITV-- 70
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMK-GFNRLKVREPVTQ 220
G++ RA+E + +Y+SIDLV I+R++ K K R MK ++
Sbjct: 71 PASGILLRAQETTKDMYSSIDLVVEKIERQIHKYKT------RLMKRKYSNFADTAVPAP 124
Query: 221 VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEI 280
+A E E I++ K F M P+T EAI Q+ ++HDF+ F + + G
Sbjct: 125 APAAEAADDGEFE--------IIKNKRFIMHPMTPEEAILQMNLLNHDFFVFYDPDLGAT 176
Query: 281 NIVYKRKAGGYGVIIP 296
N+VY+RK G YG++ P
Sbjct: 177 NVVYRRKDGKYGLLSP 192
>gi|315502062|ref|YP_004080949.1| sigma 54 modulation protein/ribosomal protein s30ea [Micromonospora
sp. L5]
gi|315408681|gb|ADU06798.1| sigma 54 modulation protein/ribosomal protein S30EA [Micromonospora
sp. L5]
Length = 214
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 32/219 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
+ ++++G+N+E+ D + HV EK+ K L+R VDV L + PR +
Sbjct: 1 MDIVVKGRNVEVPDHYRVHVAEKLAKIERYDQKLIR-VDVELF-----HERNPRQADTCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDL-VSSIIQRKLRKIKEKESDHGRHMK------ 207
R E+T T+ V+RAE Y+++D ++ + R R + GRH
Sbjct: 55 RVEITCVTRG-PVIRAEACTNDFYSALDAAIAKLDTRFRRAADRRRVHRGRHAPISVAAA 113
Query: 208 ------------GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTV 255
G L T V E + E DD I R K P+TV
Sbjct: 114 TAGLPVADLDGPGLAALDGHGTATAVAERPDESGHTEPDDQPWH--IARAKVHPAEPMTV 171
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ Q+E V HDFY F+++E+G ++VY+R A YG+I
Sbjct: 172 DDALFQMELVGHDFYLFQDKESGRPSVVYRRHAYDYGII 210
>gi|326693423|ref|ZP_08230428.1| ribosome-associated factor Y [Leuconostoc argentinum KCTC 3773]
Length = 182
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 107/196 (54%), Gaps = 20/196 (10%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
++G+N+E+TD + +VE+++ K + ++ + +++R + K + EVT+
Sbjct: 6 VRGENIEVTDALFEYVEKRLTKL---NRYIGEKATANVNLRTYQSDKSDK---AEVTIVL 59
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
+ V+RAE +YA+ID VS ++R++RK K K NR K R + +
Sbjct: 60 P-YVVLRAEAIEPDMYAAIDAVSDKLERQVRKYKTK----------INR-KSRATGFKGI 107
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+ + ++ E DD+ + +VR K ++ P++ EA Q++ + H+F+ F++ ET +
Sbjct: 108 DAEGEIPETEVDDDAIQ--VVRTKHVDLKPMSPEEAALQMDLLAHNFFIFKDAETNTDAV 165
Query: 283 VYKRKAGGYGVIIPKG 298
+YKRK G YG++ G
Sbjct: 166 IYKRKDGRYGLLETAG 181
>gi|417003372|ref|ZP_11942435.1| ribosomal subunit interface protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325478564|gb|EGC81676.1| ribosomal subunit interface protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 178
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 33/203 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+KL + KN LTD ++N E+K + + K+ H +E+DVR + G +F E
Sbjct: 1 MKLNLIAKNFTLTDDIRNESEKKFDR-LDKYFHDQQEMDVRFAKEGNDFV-------VET 52
Query: 159 TLFTKKHGVVRAEEDAETVYASID-----LVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
T ++R+E T +ID LV I + K + +++++S G+ +K F+
Sbjct: 53 TAILDGGKILRSETTDPTYQTAIDKNIDGLVRQIRKNKTKLMRDRQS--GQSIK-FDNFD 109
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
E N IVR K + P++ EAI Q+E +DH+F+ +
Sbjct: 110 PYEDDDDKDAN-----------------IVRKKEIHVKPMSAEEAILQMELLDHNFFVYL 152
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
+ + ++ +VY+RK G YG IIP
Sbjct: 153 DADDMQVRVVYRRKKGDYGQIIP 175
>gi|291439280|ref|ZP_06578670.1| sigma 54 modulation protein [Streptomyces ghanaensis ATCC 14672]
gi|291342175|gb|EFE69131.1| sigma 54 modulation protein [Streptomyces ghanaensis ATCC 14672]
Length = 230
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 34/219 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 1 MDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRCDRVE 59
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + +LRK +H K F+R VR
Sbjct: 60 ITLRSRG-PVIRAEAAASDPYAALDLAAEKLDARLRK---------QHDKRFSRRGVRRI 109
Query: 217 ---------PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFFEMPPLTV 255
P + + +EEE + + ++VR K P+T+
Sbjct: 110 SAAEVPDHVPGAATFNGNGALSAEEEQEAVPTKKIGSLEVQGEGPLVVREKTHVAAPMTL 169
Query: 256 SEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ ++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 170 DQALYEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 208
>gi|421235054|ref|ZP_15691668.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2061617]
gi|395599212|gb|EJG59392.1| ribosomal subunit interface protein [Streptococcus pneumoniae
2061617]
Length = 182
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ + ++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAISDYVVSKLEK-IEKYFQPEQELDARINLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATGQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T DA V ED N V +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 111 T-----DALV----EDSNIVQSKVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|325963930|ref|YP_004241836.1| 30S ribosomal protein S30P [Arthrobacter phenanthrenivorans Sphe3]
gi|323470017|gb|ADX73702.1| SSU ribosomal protein S30P [Arthrobacter phenanthrenivorans Sphe3]
Length = 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 23/213 (10%)
Query: 102 IIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLF 161
+I G+NL ++D + + EK+ K + V+ VD ++S G ++ EVT+
Sbjct: 1 MISGRNLTVSDRFREYAGEKISK-IESLGDKVQRVDAKVSKETNARQTGDQLT-VEVTVL 58
Query: 162 TKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE-KESDHGRHMKGFNR--------L 212
+ V+RAE A +A+ DL + + +LR+ K+ K+ HGRH R
Sbjct: 59 GRG-PVIRAEASAADKFAAFDLAYNKLLERLRRAKDRKKVHHGRHTPKAVREATASLEPA 117
Query: 213 KVREPVTQVV--ENDADVQSEEEDDNFVDE---------VIVRMKFFEMPPLTVSEAIEQ 261
EP+ N+A + EE + E V++R K F L++ +A++
Sbjct: 118 STHEPLYMEANHRNEAAAAAPEETSPYDVENDIPAGKSPVLIRRKVFPAASLSLDDAVDN 177
Query: 262 LENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+E V HDFY F ++ET ++VY+R+ YGVI
Sbjct: 178 MELVGHDFYLFVDKETNTPSVVYRRRGWTYGVI 210
>gi|160893551|ref|ZP_02074335.1| hypothetical protein CLOL250_01105 [Clostridium sp. L2-50]
gi|156864536|gb|EDO57967.1| ribosomal subunit interface protein [Clostridium sp. L2-50]
Length = 170
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 33/151 (21%)
Query: 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLK 213
++ EVT+ K H ++RAE+ ++ +Y SIDLV +I+R++ + K+K D
Sbjct: 43 QKIEVTIPMKGH-IIRAEQVSDDMYVSIDLVLEVIERQVNRHKKKLIDKE---------- 91
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEV--------IVRMKFFEMPPLTVSEAIEQLENV 265
+N A +Q ++FV+E IVR K F + P+ +A Q++ +
Sbjct: 92 ---------QNAAYLQ-----NSFVEEETDEDDEIKIVRCKKFAVKPMYPEDACIQMDLL 137
Query: 266 DHDFYGFRNEETGEINIVYKRKAGGYGVIIP 296
H+FY FRN ET E+N+VYKRK YG+I P
Sbjct: 138 GHNFYVFRNAETEEVNVVYKRKGNTYGLIEP 168
>gi|332522213|ref|ZP_08398465.1| ribosomal subunit interface protein [Streptococcus porcinus str.
Jelinkova 176]
gi|332313477|gb|EGJ26462.1| ribosomal subunit interface protein [Streptococcus porcinus str.
Jelinkova 176]
Length = 182
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+TD ++++VE K+ K + K+ E+D R++++ + + EV
Sbjct: 2 IKFSIRGENIEVTDAIRDYVESKLAK-IEKYFVEENEIDTRVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TILLGSM-TLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KIPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV EE + +VR K + P+ + EA Q+E + HDF+ + + E G
Sbjct: 107 GQVF---TSEFESEEVEESPVVKVVRTKNVTLKPMDIEEARLQMELLGHDFFIYTDSEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
E NI+Y+R+ G G+I K
Sbjct: 164 ETNILYRREDGDLGLIEAK 182
>gi|253315814|ref|ZP_04839027.1| ribosomal subunit interface protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
Length = 163
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 15/144 (10%)
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFN 210
+ EVT+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G
Sbjct: 26 KIEVTI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVA 84
Query: 211 RLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFY 270
L+ + TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+
Sbjct: 85 ELQEMQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFF 134
Query: 271 GFRNEETGEINIVYKRKAGGYGVI 294
F + ET +IVY+RK G YG+I
Sbjct: 135 VFTDRETDGTSIVYRRKDGKYGLI 158
>gi|418475227|ref|ZP_13044649.1| hypothetical protein SMCF_7681 [Streptomyces coelicoflavus ZG0656]
gi|371544159|gb|EHN72897.1| hypothetical protein SMCF_7681 [Streptomyces coelicoflavus ZG0656]
Length = 230
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCE 157
+ ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R E
Sbjct: 1 MDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRCDRVE 59
Query: 158 VTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE- 216
+TL ++ V+RAE A YA++DL + + +LRK +K +G R+ E
Sbjct: 60 ITLRSRG-PVIRAEAAASDPYAALDLAAEKLGARLRKQHDKRFSR----RGARRISAAEV 114
Query: 217 ----PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFFEMPPLTVSEAIE 260
P + + DV EE D + ++VR K P+++ +A+
Sbjct: 115 ADHVPGAATLNGNGDVVPTEEQDGVPTKKIGSLEVQGDGPLVVREKTHVAAPMSLDQALY 174
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 175 EMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 208
>gi|262282228|ref|ZP_06059997.1| ribosomal subunit interface protein [Streptococcus sp. 2_1_36FAA]
gi|262262682|gb|EEY81379.1| ribosomal subunit interface protein [Streptococcus sp. 2_1_36FAA]
Length = 180
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 111/199 (55%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQADQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K ++ NR KV
Sbjct: 57 TI-PLGSITLRAEDISQDMYGSIDLVVDKIERQIRKNKTK-------IERKNRTKV--ST 106
Query: 219 TQVVENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+Q+ DV EE VDE +VR K ++ P+ + EA+ Q+E + HDF+ + +
Sbjct: 107 SQIF---TDVVVEE-----VDEAPAKVVRSKHIDLKPMDLEEALLQMELLGHDFFIYTDV 158
Query: 276 ETGEINIVYKRKAGGYGVI 294
+ N++Y+R+ G G++
Sbjct: 159 DDNTTNVIYRREDGDLGLL 177
>gi|296394607|ref|YP_003659491.1| ribosomal subunit interface protein [Segniliparus rotundus DSM
44985]
gi|296181754|gb|ADG98660.1| ribosomal subunit interface protein [Segniliparus rotundus DSM
44985]
Length = 249
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 57/233 (24%)
Query: 101 LIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IRRC 156
+++ G+ + + + + HV EK+ + +H R V+V L+ PR +R
Sbjct: 30 IVVTGRRVVVPEHFREHVAEKMARLEKFDAHCHR-VEVELA-----HESNPRQSKQCQRV 83
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK-ESDHGRHMKGFNRLKVR 215
+VT+ K VVRAE AET YA++DL + I +LR+ K++ + HG+H
Sbjct: 84 QVTVLGKG-PVVRAEARAETFYAALDLAADKIIERLRRSKDRRQVHHGQHRP-------- 134
Query: 216 EPVTQVVENDADVQSEE----------------------------EDDNFVDEV------ 241
T V E A+ E D D+
Sbjct: 135 ---TSVAEATANGWEPEMAPAAANGGPGSAQASPALGASSGFSPARGDAQADKAPSGPGQ 191
Query: 242 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
IVR+K P+ V +A+ ++E V HDFY F ++ETG ++VY+R+ YG+I
Sbjct: 192 IVRVKSHPTSPMGVEDALNRMELVGHDFYLFHDKETGLPSVVYRRRGYDYGLI 244
>gi|408409661|ref|ZP_11180945.1| YvyD [Lactobacillus sp. 66c]
gi|409350600|ref|ZP_11233658.1| YvyD [Lactobacillus equicursoris CIP 110162]
gi|407876171|emb|CCK82751.1| YvyD [Lactobacillus sp. 66c]
gi|407877311|emb|CCK85716.1| YvyD [Lactobacillus equicursoris CIP 110162]
Length = 183
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 107/198 (54%), Gaps = 22/198 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFGKGPRIRRC 156
+K ++G+N+E+T+ ++++VE+++ K + K+ L ++V V L V K
Sbjct: 2 LKYNVRGENIEVTEALRDYVEKRLTK-LEKYFELNQDVIAHVNLKVYRDHSAK------V 54
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
EVT+ + V+RAEE + +Y SID VS ++R++RK K + + R KG + V E
Sbjct: 55 EVTI-PLPYLVLRAEETTDDMYRSIDFVSEKLERQIRKYKTRVNRKSRE-KGLDEFFVPE 112
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ E A + IVR K + P+ EAI Q++ ++HDF+ F++ E
Sbjct: 113 EAPEAKEEKAPMFK-----------IVRNKRVNLKPMDPEEAILQMDMLEHDFFVFQDAE 161
Query: 277 TGEINIVYKRKAGGYGVI 294
T ++VY+R G YG+I
Sbjct: 162 TNGTSVVYRRNDGSYGLI 179
>gi|342216380|ref|ZP_08709027.1| ribosomal subunit interface-like protein [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341587270|gb|EGS30670.1| ribosomal subunit interface-like protein [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 142
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
+ E+T+F H ++RAEE + +YASID+ ++R++RK K K LK
Sbjct: 11 KVEITVFLPGH-ILRAEESTDDMYASIDIAVQALERQVRKYKTK-------------LKK 56
Query: 215 REPVTQVVE-NDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
R + + + + + D+ D ++R K F++ P+ + EAI Q++ ++H+F+ +
Sbjct: 57 RYQNNDSIRFENFEQEKPKADEESPDGQLIRNKDFDLRPMAIDEAILQMDLLNHNFFVYL 116
Query: 274 NEETGEINIVYKRKAGGYGVII 295
+ + E+ +VY+RK G YG II
Sbjct: 117 DADQDEVCVVYRRKDGNYGRII 138
>gi|116629960|ref|YP_815132.1| ribosome-associated protein Y [Lactobacillus gasseri ATCC 33323]
gi|300361279|ref|ZP_07057456.1| ribosomal subunit interface protein [Lactobacillus gasseri JV-V03]
gi|420147829|ref|ZP_14655103.1| Ribosomal subunit interface protein [Lactobacillus gasseri CECT
5714]
gi|116095542|gb|ABJ60694.1| sigma 54 modulation protein / SSU ribosomal protein S30P
[Lactobacillus gasseri ATCC 33323]
gi|300353898|gb|EFJ69769.1| ribosomal subunit interface protein [Lactobacillus gasseri JV-V03]
gi|398400497|gb|EJN54044.1| Ribosomal subunit interface protein [Lactobacillus gasseri CECT
5714]
Length = 196
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 109/206 (52%), Gaps = 24/206 (11%)
Query: 91 SWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREV--DVRLSVRGGEFG 148
+ +G + +K ++G+N+E+TD ++++V++++ K + K+ + +V + L V
Sbjct: 9 TLEGESTMLKYNVRGENIEVTDALRDYVQKRLDK-LEKYFEINSDVIAHINLKVYPDHTA 67
Query: 149 KGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKG 208
K EVT+ + V+RAE+ + +Y SID VS ++R++RK K + + R KG
Sbjct: 68 K------VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRE-KG 119
Query: 209 FNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHD 268
D++ E++ D IVR K ++ P+ EA+ Q++ + HD
Sbjct: 120 LKDFFY-----------EDLEEEKKTPKEFD--IVRNKHLDLKPMNAEEAVLQMDLLGHD 166
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVI 294
F+ F + +T +IVY+R G YG+I
Sbjct: 167 FFVFEDADTNGTSIVYRRNDGRYGLI 192
>gi|429202267|ref|ZP_19193675.1| ribosomal subunit interface protein [Streptomyces ipomoeae 91-03]
gi|428662194|gb|EKX61642.1| ribosomal subunit interface protein [Streptomyces ipomoeae 91-03]
Length = 241
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 98 SVKLIIQGKNLELTDTVKNHVEEKVG-KAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRC 156
V ++++G+ E+ + + HV EK+ + + K V +DV +S + + R R
Sbjct: 11 CVDIVVKGRKTEVPERFRKHVAEKLKLEKIQKLDGKVISLDVEVS-KEPNPRQADRSDRV 69
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVRE 216
E+TL ++ V+RAE A YA++DL + ++ +LRK +K +G RL E
Sbjct: 70 EITLHSRG-PVIRAEAAASDPYAALDLAADKLEARLRKQHDKRYTR----RGARRLTAAE 124
Query: 217 -----PVTQVVENDADVQSEEEDDNFVDE------------VIVRMKFFEMPPLTVSEAI 259
P + + V EE+ + + +IVR K P+T+ +A+
Sbjct: 125 VADHVPGVATLNGNGYVVDEEKQGDVPTKRIGSLEVTGEGPLIVREKTHVASPMTLDQAL 184
Query: 260 EQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDFY F + ET E ++VY+R A YGVI
Sbjct: 185 YEMELVGHDFYLFVDSETKEPSVVYRRHAYDYGVI 219
>gi|154496231|ref|ZP_02034927.1| hypothetical protein BACCAP_00516 [Bacteroides capillosus ATCC
29799]
gi|150274314|gb|EDN01391.1| ribosomal subunit interface protein [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 181
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 23/199 (11%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K + K + L V + E+KVGK + ++ E + SV R V
Sbjct: 1 MKFVFTDKKVNLPRKVHAYAEKKVGK-LDRYFKADAEAAIVFSVEKD---------RNNV 50
Query: 159 TLFTKKHG-VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP 217
L + G ++R E ++A+ID + ++R+LRK K + R F R E
Sbjct: 51 ELTIRSAGTIIRVAESTSDMFATIDAAVASVERQLRKNKARLEKRLRQ-DAFVRSVDEEE 109
Query: 218 VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
++ V + +EEE+ IVR K F + P++V EAI Q+ VDH F+ FR+ +
Sbjct: 110 ISSFVPD-----TEEEEFR-----IVRTKKFPIRPMSVEEAILQMNLVDHTFFAFRDADA 159
Query: 278 -GEINIVYKRKAGGYGVII 295
G +VYKR GGYG+I+
Sbjct: 160 DGSFAVVYKRNDGGYGLIV 178
>gi|417919027|ref|ZP_12562570.1| ribosomal subunit interface protein [Streptococcus australis ATCC
700641]
gi|342834827|gb|EGU69087.1| ribosomal subunit interface protein [Streptococcus australis ATCC
700641]
Length = 185
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 112/205 (54%), Gaps = 29/205 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ + ++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIHDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TL----FTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKV 214
T+ T +RAE+ ++ +Y SIDLV I+R++RK K K ++ NR K
Sbjct: 57 TIPLGSIT-----LRAEDVSQDMYGSIDLVVDKIERQIRKNKTK-------IEKKNRSK- 103
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
T + DA V+ ++ E +VR K ++ P+ + EAI Q+E + HDF+ +++
Sbjct: 104 --SATSKIFTDALVE-----ESVALEKVVRTKTIDIEPMELDEAILQMELLGHDFFIYKD 156
Query: 275 EETGEINIVYKRKAGGYGVIIPKGN 299
E N++Y+R+ G G++ K N
Sbjct: 157 VEDNTTNVIYRREDGDVGLLEVKEN 181
>gi|389844723|ref|YP_006346803.1| ribosomal subunit interface protein [Mesotoga prima MesG1.Ag.4.2]
gi|387859469|gb|AFK07560.1| ribosomal subunit interface protein [Mesotoga prima MesG1.Ag.4.2]
Length = 177
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 29/195 (14%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKA--VLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTL 160
I K++ +TD++K++++++ K V+ L+ +D+RLS K + E T
Sbjct: 5 IYSKDVTVTDSMKDYIDKRFSKVSKVVNEEKLI-SMDLRLS-------KERAFYKIEATA 56
Query: 161 FTKKHGV-VRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVT 219
GV VR EE Y +D S +R++++ KE+ +H GF
Sbjct: 57 HLP--GVMVRVEEKGSDFYTVVDSSSDAFERRIKRFKERT--RYKHKNGFK--------- 103
Query: 220 QVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGE 279
EN + S+ E+D+ +I R K F + P+T EA+ Q+E + H F+ +RN +T E
Sbjct: 104 ---ENLDSIPSKFEEDH--STMITRRKKFTIKPMTEEEAVLQMEMLGHTFFVYRNIDTDE 158
Query: 280 INIVYKRKAGGYGVI 294
+N++Y RK G G+I
Sbjct: 159 VNVLYTRKNGSIGII 173
>gi|395244796|ref|ZP_10421750.1| Ribosomal subunit interface protein [Lactobacillus hominis CRBIP
24.179]
gi|394483002|emb|CCI82758.1| Ribosomal subunit interface protein [Lactobacillus hominis CRBIP
24.179]
Length = 181
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 106/199 (53%), Gaps = 26/199 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVE---EKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
+K ++G+N+E+TD+++++V+ EK+ K S ++ V++R+ +
Sbjct: 2 LKYNVRGENIEVTDSLRDYVQKRLEKLEKYFEIESDVIAHVNMRVYPDHSA--------K 53
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT+ + V+RAE+ + +Y SID VS ++R++RK K + + R KG
Sbjct: 54 VEVTI-PLPYLVLRAEDTTDDMYKSIDFVSEKLERQIRKYKTRINRKSRE-KGLKDF--- 108
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
EN V+ E+E + IVR K ++ P+ EA+ Q++ + HDF+ F +
Sbjct: 109 -----FYEN---VEEEKETPKKFN--IVRNKHLDLKPMNAEEAVLQMDLLGHDFFIFEDA 158
Query: 276 ETGEINIVYKRKAGGYGVI 294
+T +IVY+R G YG+I
Sbjct: 159 DTNGTSIVYRRNDGRYGLI 177
>gi|163745215|ref|ZP_02152575.1| sigma-54 modulation protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161382033|gb|EDQ06442.1| sigma-54 modulation protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 188
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 11/194 (5%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I GK +++ D ++ HV ++ +AV K++ + V S G EF CE T+
Sbjct: 5 ISGKQIDIGDALRTHVRTELDEAVGKYAERPTDALVVFSKTGHEFA-------CEATVHL 57
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVV 222
A+ A +YA+ D + ++++LR+ K + DH H +++ + ++
Sbjct: 58 STGLTASAKAKATEIYAAFDSCCAKMEKQLRRYKRRLKDH--HKDRAEPVELLGASSYIL 115
Query: 223 ENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINI 282
+D+D ++E D +I M+ ++P L+V EA+ Q+E FR E +N+
Sbjct: 116 ASDSDSDAQEPD-TLQPMIIAEMQM-KVPTLSVGEAVMQMELSGDPVLLFRKEGQEGMNV 173
Query: 283 VYKRKAGGYGVIIP 296
VY+R+ G G I P
Sbjct: 174 VYRREDGNIGWIDP 187
>gi|307707868|ref|ZP_07644345.1| ribosome-associated factor Y [Streptococcus mitis NCTC 12261]
gi|307616128|gb|EFN95324.1| ribosome-associated factor Y [Streptococcus mitis NCTC 12261]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 110/196 (56%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQAEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K ++ N+ KV
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-------IERKNKNKV---A 105
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DA V ED N +VR K ++ P+ + EAI Q++ + HDF+ + + E
Sbjct: 106 TSQLFTDALV----EDTNVAQSRVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVIYRREDGEIGLL 177
>gi|315641248|ref|ZP_07896325.1| ribosomal subunit interface protein [Enterococcus italicus DSM
15952]
gi|315483015|gb|EFU73534.1| ribosomal subunit interface protein [Enterococcus italicus DSM
15952]
Length = 186
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 22/202 (10%)
Query: 94 GPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVRE-VDVRLSVRGGEFGKGPR 152
G + K ++G+N+E+T+ ++ +V +KVGK S V L V + K
Sbjct: 3 GAIVMFKYNVRGENIEVTEAIREYVIKKVGKLERYFSDAPDATAHVNLKVYSDKTAK--- 59
Query: 153 IRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRL 212
EVT+ + V+RAEE + +YAS+DLV ++R++RK K K + R
Sbjct: 60 ---VEVTI-PLPYLVLRAEETSPDLYASVDLVVDKLERQIRKFKTKINRKSR-------- 107
Query: 213 KVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
V P T V+ ++ + E IVR K + P+ EA+ Q+ + H+F+ F
Sbjct: 108 AVVIPETPVIPSNEKEEEVSE------LEIVRTKRLSLKPMDSEEAVLQMNMLGHNFFIF 161
Query: 273 RNEETGEINIVYKRKAGGYGVI 294
+ ++ +IVY+RK G YG+I
Sbjct: 162 EDADSNGTSIVYRRKDGKYGLI 183
>gi|133930475|gb|ABO43809.1| ribosome-associated protein Y [Lactobacillus reuteri]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 108/203 (53%), Gaps = 32/203 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGP 151
+K I+G+N+++T++++++V +++ + +V +H V L V
Sbjct: 2 LKFNIRGENVQVTESIRDYVVKRISRLQKFFEDSVEATAH------VNLKVYPN------ 49
Query: 152 RIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNR 211
R + EVT+ + +RAEE + +Y SIDLV+ ++R++RK K K + R KG
Sbjct: 50 RTYKVEVTI-PLPYLTLRAEETSNDMYGSIDLVTDKLERQIRKYKTKVNRKSRE-KGLKN 107
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
L + + +D D ++ +DD IVR K + P+ EA+ Q++ + H+F+
Sbjct: 108 L-------EFIPSDND-GTDGQDDELK---IVRTKQVSLKPMDPEEAVLQMDMLGHNFFI 156
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F++ ET +IVY+R G YG+I
Sbjct: 157 FQDAETNGTSIVYRRNDGRYGLI 179
>gi|451943485|ref|YP_007464121.1| hypothetical protein A605_03740 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902872|gb|AGF71759.1| hypothetical protein A605_03740 [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 222
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 26/208 (12%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR------C 156
I G+N+E+ D + V K+ K + +D L+ E P RR
Sbjct: 19 ITGRNVEVPDHFADRVNTKLAK--------IERLDPTLTFFHVELQHEPNPRRDSQSDRI 70
Query: 157 EVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES---DHGRHMKGFNRLK 213
++T K H + RAE ++ YA+++ + ++R LRK+K + S R +G +
Sbjct: 71 QITATGKGH-IARAEAKEDSFYAALETALAKMERSLRKVKARRSISRSGHRAPQGTGEVA 129
Query: 214 VREPVTQVVENDADVQSEEEDDNFVDEV-------IVRMKFFEMPPLTVSEAIEQLENVD 266
D + + + D + D V IVR K P++V +A+ ++E V
Sbjct: 130 AELAAEARRAAD-ETGRDRDADPYADTVEDVVPGRIVRTKEHPANPMSVDDALSEMELVG 188
Query: 267 HDFYGFRNEETGEINIVYKRKAGGYGVI 294
HDFY F NEE G ++VY+R A YG+I
Sbjct: 189 HDFYLFINEENGRPSVVYRRHAFDYGLI 216
>gi|358445596|ref|ZP_09156194.1| ribosome-associated protein [Corynebacterium casei UCMA 3821]
gi|356608464|emb|CCE54462.1| ribosome-associated protein [Corynebacterium casei UCMA 3821]
Length = 221
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 30/218 (13%)
Query: 97 SSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRR- 155
++ ++ I G+N+E+ + + V+ K+ K + +D L+ E P RR
Sbjct: 6 TAAQVTITGRNVEVPEHFSDRVKGKLSK--------IERLDPTLTFFHVELQHEPNPRRD 57
Query: 156 -----CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK---EKESDHGRHMK 207
++T K H + RAE ++ YA+++ + ++R LRK+K E R K
Sbjct: 58 AQSERIQITATGKGH-IARAEAKEDSFYAALETAMAKMERSLRKVKVRREATKSGHRARK 116
Query: 208 GFNRLKVREPVTQVVENDADVQSEEEDDNFVDEV-----------IVRMKFFEMPPLTVS 256
G L E V D + ++ ++ +VD +VR K P++V
Sbjct: 117 GTGELAA-EIVADAEAAREDQREDQREERYVDPYAETIEDQRPGQVVRSKEHPATPMSVD 175
Query: 257 EAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
+A+ ++E V HDFY F NEET ++VY+R A YG+I
Sbjct: 176 DALSEMELVGHDFYLFINEETQRPSVVYRRHAFDYGLI 213
>gi|315924853|ref|ZP_07921070.1| ribosomal subunit interface protein [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621752|gb|EFV01716.1| ribosomal subunit interface protein [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 185
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 34/204 (16%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I GKN+ +++ +K+ +++K K + +E ++ + F K + EV
Sbjct: 8 MKFTIYGKNMHVSEGLKDILKKKFQKF---DRYFDKETEIYAT-----FSKDKNGQMLEV 59
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K ++RAEE ++ + +SI+ V ++ +LRK K K +
Sbjct: 60 TIPLGK-TILRAEEWSDDMKSSIEAVVDKLEGQLRKYKTK-------------------L 99
Query: 219 TQVVENDA-----DVQSEEEDDNFVD-EVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGF 272
+ N+A D +EED VD +VR K F + P++V EA Q++ ++HDF+ F
Sbjct: 100 QKRYANEAPKLIFDAFEDEEDAESVDVPKVVRTKKFAIKPMSVDEATMQMDLLEHDFFVF 159
Query: 273 RNEETGEINIVYKRKAGGYGVIIP 296
N ET ++N+VY+R G +G+I P
Sbjct: 160 LNAETDDVNVVYRRHDGNFGLIEP 183
>gi|386344003|ref|YP_006040167.1| ribosomal subunit interface protein [Streptococcus thermophilus JIM
8232]
gi|339277464|emb|CCC19212.1| ribosomal subunit interface protein [Streptococcus thermophilus JIM
8232]
Length = 182
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 110/199 (55%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K V K+ H +E+ R++++ + + EV
Sbjct: 2 IKYSIRGENIEVTEALRDYVESKLSK-VEKYFHEDQELHARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ T +RAE+ + +Y SIDLV I R++RK K K + R + P
Sbjct: 57 TIPTGS-VTLRAEDVSLDMYGSIDLVVDKIARQIRKNKTKIARKYRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
+++ + + +EE + +VR K E+ P+ V EAI Q+E + HDF+ + + E
Sbjct: 107 SEMFSTEFN---KEEVEEAPAVEVVRTKNIELKPMDVEEAILQMELLGHDFFIYTDSEDH 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
N++YKR+ G YG+I K
Sbjct: 164 TTNVLYKREDGNYGLIEAK 182
>gi|68536718|ref|YP_251423.1| hypothetical protein jk1631 [Corynebacterium jeikeium K411]
gi|260577909|ref|ZP_05845839.1| S30AE family protein [Corynebacterium jeikeium ATCC 43734]
gi|68264317|emb|CAI37805.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
gi|258603929|gb|EEW17176.1| S30AE family protein [Corynebacterium jeikeium ATCC 43734]
Length = 230
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 38/214 (17%)
Query: 103 IQGKNLELTDTVKNHVEEKVGK-------AVLKHSHLVREVDVRLSVRGGEFGKGPRIRR 155
I G+N+E+ + + V+ K+ K H L E + R +G + R
Sbjct: 24 ITGRNVEVPEHFADRVKGKLAKIERLDPTLTFFHVELQHEPNPR---------RGDQQDR 74
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE----SDHGRHMKGFNR 211
++T K H + RAE ++ YA++++ ++R LRK+K + S H M
Sbjct: 75 LQITATGKGH-IARAEAKEDSFYAALEVAVGRMERSLRKVKARRKIARSGHRTPMS---- 129
Query: 212 LKVREPVTQVVEN---DADVQSEE--------EDDNFVDEVIVRMKFFEMPPLTVSEAIE 260
+ E +VE+ A+ + EE +D F IVR K + P++V +A+
Sbjct: 130 --MGEAAASLVEDAQPKAETKPEEVGQYDVDPYEDQFKPGQIVRKKVHKAAPISVDQALS 187
Query: 261 QLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
++E V HDF+ F NEE G+ ++VY+R A YG+I
Sbjct: 188 EMELVGHDFFLFINEENGQPSVVYRRHAFDYGLI 221
>gi|389866284|ref|YP_006368525.1| 30S ribosomal protein S30 [Modestobacter marinus]
gi|388488488|emb|CCH90065.1| SSU ribosomal protein S30P [Modestobacter marinus]
Length = 249
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 35/224 (15%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPR----IR 154
++++++G+N+E+ + + HVE+KVG+ S ++R +DV L K PR +
Sbjct: 1 MEIVVRGRNVEVPEHFRTHVEDKVGQLERFDSKVIR-IDVELL-----HEKNPRQAANCQ 54
Query: 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKES-DHGRHMKGFNRLK 213
R E+TL K V RAE A YA+++L + ++ ++R+ ++ HGRH R+
Sbjct: 55 RVEITLRGKG-PVARAEASAPDFYAALELAAGKLESRMRRANDRRRVHHGRHTPPSVRID 113
Query: 214 VR-----------------------EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEM 250
EP AD + D + IVR K
Sbjct: 114 AAPVPEPTPPVVPADDLTAGVSSAPEPALAGDPGSADSPLVTDLDEHLPGRIVREKVHPA 173
Query: 251 PPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVI 294
P+ + +A+ ++E V HDF+ F +TG+ ++VY+R A YG+I
Sbjct: 174 TPMHIDQALYEMELVGHDFFMFLCADTGQPSVVYRRHAFDYGLI 217
>gi|306826155|ref|ZP_07459490.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|414157592|ref|ZP_11413889.1| ribosome-associated factor Y [Streptococcus sp. F0441]
gi|417940190|ref|ZP_12583478.1| ribosomal subunit interface protein [Streptococcus oralis SK313]
gi|421489238|ref|ZP_15936621.1| ribosomal subunit interface protein [Streptococcus oralis SK304]
gi|304431631|gb|EFM34612.1| ribosomal subunit interface protein [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|343389071|gb|EGV01656.1| ribosomal subunit interface protein [Streptococcus oralis SK313]
gi|400366241|gb|EJP19276.1| ribosomal subunit interface protein [Streptococcus oralis SK304]
gi|410872028|gb|EKS19973.1| ribosome-associated factor Y [Streptococcus sp. F0441]
Length = 182
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+NLE+T+ ++++V K+ K + K+ +E+D R++++ + + EV
Sbjct: 2 IKYSIRGENLEVTEAIRDYVVSKLEK-IEKYFQPEQELDARVNLKVYR----EKTAKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV+ I+R++RK K K K N++ +
Sbjct: 57 TI-PLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTK-----IERKNKNKVATSQLF 110
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
T + DADV V +VR K ++ P+ + EA+ Q++ + HDF+ + + E
Sbjct: 111 TDALVEDADV---------VQPKVVRSKQIDLKPMDLEEALLQMDLLGHDFFIYVDVEDQ 161
Query: 279 EINIVYKRKAGGYGVI 294
N++Y+R+ G G++
Sbjct: 162 TTNVLYRREDGEVGLL 177
>gi|288575119|ref|ZP_06393476.1| sigma 54 modulation protein/ribosomal protein S30EA
[Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570860|gb|EFC92417.1| sigma 54 modulation protein/ribosomal protein S30EA
[Dethiosulfovibrio peptidovorans DSM 11002]
Length = 182
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Query: 106 KNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH 165
+N+EL D +K ++E K+ K + K + + + L++ G I EVT + +
Sbjct: 8 RNVELADELKEYMERKLSK-LEKFFPKILDNQIVLNLSRG-------IHTVEVT--SNVN 57
Query: 166 GVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVEN 224
GV+ R EE + + D+ ++R++R+ H +++ +LK + + E
Sbjct: 58 GVIMRGEERDSDLRKAFDIALKNLERRIRR-------HKKYLVDRVQLKTHDVSFNIDEI 110
Query: 225 DADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVY 284
AD+ ++ DE IV++K F + P++ EA Q++ + H F+ F N E+G +N+VY
Sbjct: 111 LADMSKPAVEEK--DEKIVKVKKFPLRPMSAEEACMQMDLLGHSFFIFSNVESGSMNVVY 168
Query: 285 KRKAGGYGVIIP 296
KRK+GGYG++ P
Sbjct: 169 KRKSGGYGLLEP 180
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,718,628,315
Number of Sequences: 23463169
Number of extensions: 199432903
Number of successful extensions: 3138121
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9165
Number of HSP's successfully gapped in prelim test: 1766
Number of HSP's that attempted gapping in prelim test: 2616723
Number of HSP's gapped (non-prelim): 297834
length of query: 320
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 178
effective length of database: 9,027,425,369
effective search space: 1606881715682
effective search space used: 1606881715682
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 77 (34.3 bits)