BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020905
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19954|PRSP1_SPIOL Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea
GN=PSRP1 PE=1 SV=2
Length = 302
Score = 343 bits (880), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 168/238 (70%), Positives = 202/238 (84%), Gaps = 12/238 (5%)
Query: 84 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143
KP V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS R
Sbjct: 60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSAR 119
Query: 144 GGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG 203
GG+ KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHG
Sbjct: 120 GGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHG 179
Query: 204 RHMKGFNRLKVREP---------VTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLT 254
RHMKGFNR KVR+P V + VE+ A EDD+F++EV VR K+F+MPPLT
Sbjct: 180 RHMKGFNRSKVRDPEPVRITREEVLEEVES-APAPVSVEDDDFIEEV-VRTKYFDMPPLT 237
Query: 255 VSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVET 312
++EA+EQLENVDHDFY FRNEETG+INI+YKRK GGYG+IIPK +GK +KLE L V+T
Sbjct: 238 ITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQT 294
>sp|P74518|LRTA_SYNY3 Light-repressed protein A homolog OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=lrtA PE=3 SV=1
Length = 191
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 21/203 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+ + ++VEEKV +AV +L +VDV LSV + RI +
Sbjct: 1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLV+ I R+LRK KE+ D K +K
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTS 109
Query: 216 EPVTQ--VVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFR 273
E V V EN ++ E + ++RMK+F MPP+ + +A+EQL+ VDHDFY FR
Sbjct: 110 EIVEDKPVEENLIGDRAPE-----LPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFR 164
Query: 274 NEETGEINIVYKRKAGGYGVIIP 296
N++T EIN++Y R GGYGVI P
Sbjct: 165 NKDTDEINVIYIRNHGGYGVIQP 187
>sp|P47908|LRTA_SYNP2 Light-repressed protein A OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=lrtA PE=2 SV=2
Length = 193
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 30/209 (14%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RR 155
+KL+IQG N+ +T+++ ++VE K+ KA +VDV LSV RI +
Sbjct: 1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSV-----ANNARITDKHK 55
Query: 156 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR 215
EVT++ V+RA+E +E +YASIDLVS I R+LRK KEK H V+
Sbjct: 56 AEVTVYANG-TVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTH--------VQ 106
Query: 216 EPVTQVVENDADVQSEEEDDNFVDE-------VIVRMKFFEMPPLTVSEAIEQLENVDHD 268
E ++V+ D DN + + +VRMK+F MPP+T+ EA+EQL+ VDHD
Sbjct: 107 EKTSEVLPEDP------VPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHD 160
Query: 269 FYGFRNEETGEINIVYKRKAGGYGVIIPK 297
FY F N++T IN++Y R GGYGVI P+
Sbjct: 161 FYMFLNKDTNAINVIYIRNHGGYGVIQPR 189
>sp|Q4L4H7|Y2139_STAHJ Uncharacterized protein SH2139 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=SH2139 PE=3 SV=1
Length = 192
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 17/200 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+K+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKIGK-LERYFNDVPNAVAHVKVKTYQNSTT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK----EKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDLV+S ++R++RK K K HG ++
Sbjct: 57 TI-PLKNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHGEPEAFVAEVQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
P EN DV +E +D+ ++ I+R K F + P+ EA+ Q+E + HDFY F +
Sbjct: 116 APP-----ENVDDVNAEPTNDSEIE--IIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTD 168
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVYKRK G YG+I
Sbjct: 169 RETDGTSIVYKRKDGKYGLI 188
>sp|Q9RVE7|Y1082_DEIRA Uncharacterized protein DR_1082 OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1082 PE=1
SV=1
Length = 191
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 113/196 (57%), Gaps = 17/196 (8%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ G+N+E+T+ ++ +VEEK+ + + +++ + + V L+VR + R R EV L
Sbjct: 6 LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQLNV 62
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVR-EPVTQV 221
G++RAEE +YA+ID S +++R+LRK K R+MK R + R EP+
Sbjct: 63 PG-GIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLPGP 113
Query: 222 VENDADVQSEEEDDNFVDEV---IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
E + + Q + V E IVR K FE+ P++ +A+ Q+E + HDFY F++ + G
Sbjct: 114 AEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-G 172
Query: 279 EINIVYKRKAGGYGVI 294
+ +VY+R+ G YG+I
Sbjct: 173 QTGVVYRRRDGHYGLI 188
>sp|Q8CTF2|Y534_STAES Uncharacterized protein SE_0534 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0534 PE=3 SV=1
Length = 189
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N AD ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>sp|Q5HQX7|Y419_STAEQ Uncharacterized protein SERP0419 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0419 PE=3 SV=1
Length = 189
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 14/197 (7%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEKVGK +++ V VR + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAV---AHVRVKTYSNSTT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ K +RAEE + +YA IDL+++ ++R++RK K + + R +G + V E
Sbjct: 57 TI-PLKDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRD-RGDQDIFVAEVQ 114
Query: 219 TQVVENDAD-VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEET 277
N AD ++SE D I+R K F + P+ EA+ Q+ + HDF+ F + ET
Sbjct: 115 ESTTNNHADDIESEN------DIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRET 168
Query: 278 GEINIVYKRKAGGYGVI 294
+IVY+RK G YG+I
Sbjct: 169 DGTSIVYRRKDGKYGLI 185
>sp|Q49VV1|Y1964_STAS1 Uncharacterized protein SSP1964 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP1964 PE=3 SV=1
Length = 190
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 113/199 (56%), Gaps = 17/199 (8%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G+NL +TD ++N++EEK+GK + ++ + V + V+ + + EV
Sbjct: 2 IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQNSAT----KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGR---HMKGFNRLKVR 215
T+ KK +RAEE + +YA IDL+++ ++R++RK K + + R + F L
Sbjct: 57 TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRNRGEQEAFASLPEE 115
Query: 216 EPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNE 275
+ ++ +ND E E DN ++ I+R K F + P+ EA+ Q++ + HDF+ F +
Sbjct: 116 KEAVEI-QND-----ENEADNEIE--IIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDR 167
Query: 276 ETGEINIVYKRKAGGYGVI 294
ET +IVYKRK G YG+I
Sbjct: 168 ETDGTSIVYKRKDGKYGLI 186
>sp|Q6GIN9|Y806_STAAR Uncharacterized protein SAR0806 OS=Staphylococcus aureus (strain
MRSA252) GN=SAR0806 PE=3 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q2G055|Y767_STAA8 Uncharacterized protein SAOUHSC_00767 OS=Staphylococcus aureus
(strain NCTC 8325) GN=SAOUHSC_00767 PE=3 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q99VM3|Y752_STAAM Uncharacterized protein SAV0752 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV0752 PE=1 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q2FIN9|Y736_STAA3 Uncharacterized protein SAUSA300_0736 OS=Staphylococcus aureus
(strain USA300) GN=SAUSA300_0736 PE=3 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q6GB78|Y717_STAAS Uncharacterized protein SAS0717 OS=Staphylococcus aureus (strain
MSSA476) GN=SAS0717 PE=3 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q7A1G5|Y714_STAAW Uncharacterized protein MW0714 OS=Staphylococcus aureus (strain
MW2) GN=MW0714 PE=3 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q7A6R6|Y707_STAAN Uncharacterized protein SA0707 OS=Staphylococcus aureus (strain
N315) GN=SA0707 PE=1 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|Q2YSH7|Y704_STAAB Uncharacterized protein SAB0704 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=SAB0704 PE=3 SV=1
Length = 190
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTD 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|P47995|Y400_STACT Uncharacterized protein Sca_0400 OS=Staphylococcus carnosus (strain
TM300) GN=Sca_0400 PE=3 SV=2
Length = 188
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 104/203 (51%), Gaps = 28/203 (13%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++E+KVGK + +V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEDKVGKL---ERYFTNVPNVNAHVKVKTYANSST--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK-------EKESDHGRHMKGFNR 211
T+ +RAEE + +YA IDL+++ ++R++RK K KES+H
Sbjct: 57 TI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKRKESEH--------- 106
Query: 212 LKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYG 271
EP E + + + D+ ++ I+R K F + P+ EA+ Q++ + HDF+
Sbjct: 107 ----EPFPATPETPPETAVDHDKDDEIE--IIRSKQFSLKPMDSEEAVLQMDLLGHDFFI 160
Query: 272 FRNEETGEINIVYKRKAGGYGVI 294
F + ET +IVY+RK G YG+I
Sbjct: 161 FNDRETDGTSIVYRRKDGKYGLI 183
>sp|Q5HHR8|Y815_STAAC Uncharacterized protein SACOL0815 OS=Staphylococcus aureus (strain
COL) GN=SACOL0815 PE=3 SV=1
Length = 190
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 20/200 (10%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
++ I G NL +TD ++N++EEK+GK + + V V+ + + EV
Sbjct: 2 IRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAV---AHVKVKTYSNSAT--KIEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRK----IKEKESDHGRHMKGFNRLKV 214
T+ K+ +RAEE + +YA IDL+++ ++R++RK I K D G L+
Sbjct: 57 TI-PLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQE 115
Query: 215 REPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ TQV +NDA DDN ++ I+R K F + P+ EA+ Q+ + HDF+ F +
Sbjct: 116 MQE-TQV-DNDA------YDDNEIE--IIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFID 165
Query: 275 EETGEINIVYKRKAGGYGVI 294
ET +IVY+RK G YG+I
Sbjct: 166 RETDGTSIVYRRKDGKYGLI 185
>sp|P28368|YVYD_BACSU Putative sigma-54 modulation protein OS=Bacillus subtilis (strain
168) GN=yvyD PE=1 SV=2
Length = 189
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 27/202 (13%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I+G+N+E+T +K+HVE K+GK H V + DV ++++ + + EVT+
Sbjct: 5 IRGENIEVTPALKDHVERKIGKLERYFDHSV-DADVNVNLKF----YNDKESKVEVTI-P 58
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREP----- 217
+R+E E +Y +IDL ++ ++R++RK K K NR K RE
Sbjct: 59 MTDLALRSEVHNEDMYNAIDLATNKLERQIRKHKTK----------VNR-KFREQGSPKY 107
Query: 218 -VTQVVENDAD--VQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRN 274
+ + +D D VQ + E++ +D IVR K F + P+ EAI Q+ + H+F+ F N
Sbjct: 108 LLANGLGSDTDIAVQDDIEEEESLD--IVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTN 165
Query: 275 EETGEINIVYKRKAGGYGVIIP 296
ET N+VY+R G YG+I P
Sbjct: 166 AETNLTNVVYRRNDGKYGLIEP 187
>sp|Q5XAQ7|RAFY_STRP6 Ribosome-associated factor Y OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=M6_Spy1371 PE=1
SV=1
Length = 182
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+K I+G+N+E+T+ ++++VE K+ K + K+ +E+D R++++ R + EV
Sbjct: 2 IKFSIRGENIEVTEAIRDYVESKLTK-IEKYFAKDQEIDARVNLKVYR----ERSSKVEV 56
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV 218
T+ +RAE+ ++ +Y SIDLV I+R++RK K K + R + P
Sbjct: 57 TI-PLDSVTLRAEDVSQDMYGSIDLVVDKIERQIRKNKTKIAKKHRE---------KVPT 106
Query: 219 TQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETG 278
QV + + EE D + +VR K + P+ V EA Q+E + HDF+ + + E G
Sbjct: 107 GQVFTTEFEA---EEVDEIPEVQVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDG 163
Query: 279 EINIVYKRKAGGYGVIIPK 297
NI+Y+R+ G G+I K
Sbjct: 164 ATNILYRREDGNLGLIEAK 182
>sp|P17265|Y380_RHIME Uncharacterized protein R00380 OS=Rhizobium meliloti (strain 1021)
GN=R00380 PE=3 SV=2
Length = 190
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
+ GK++E+ D+ + + E++ +AV K+ V + G F C++ L T
Sbjct: 5 VSGKHMEIGDSFRVRIGEQIEQAVTKYFDGGYSSQVTVEKSGSRFSAD-----CKLHLDT 59
Query: 163 KKHGVV-RAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQV 221
GVV +A A ++ D S I+++LR+ K K DH + G N +V V
Sbjct: 60 ---GVVLQANGQANEPQSAFDAASERIEKRLRRYKRKLKDH-HNGNGQNSTEVAYRVMDS 115
Query: 222 VENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEIN 281
V + EE D++ IV ++ ++V+ A+ L+ D FR+ ++N
Sbjct: 116 VP----FEDEEVPDDYA-PTIVAETTKQLRTMSVANAVMALDMTDEPVLMFRSPGKDDLN 170
Query: 282 IVYKRKAGGYGVI 294
IVY+R G G I
Sbjct: 171 IVYRRNDGNIGWI 183
>sp|P30334|Y724_BRAJA Uncharacterized protein blr0724 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=blr0724 PE=3 SV=1
Length = 203
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 10/200 (5%)
Query: 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 158
+ L I GK++ + + ++ V ++ + + K+ + LS G F R +
Sbjct: 1 MTLRISGKSVSVGEALRGRVSDRTEEVLRKYFDGNYSGHITLSKDGFGF-------RTDC 53
Query: 159 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHG--RHMKGFNRLKVRE 216
L + A+ +A YAS D +I+++L++ K + D + L +
Sbjct: 54 ALHLDSGITLEADSNAPDAYASADQALVMIEKRLKRYKSRLKDRSARKAHVASAALAAMD 113
Query: 217 PVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEE 276
+ V+E + + E+E + VI+ + L+VSEA+ +L+ F++
Sbjct: 114 ATSYVLEAPGEGEDEDEVTGY-SPVIIAEATTSLKQLSVSEAVMELDLSGAPCLVFQHGS 172
Query: 277 TGEINIVYKRKAGGYGVIIP 296
+G +NI+Y+R G G + P
Sbjct: 173 SGRVNIIYRRADGNVGWVDP 192
>sp|P17160|HPF_AZOVI Ribosome hibernation promoting factor OS=Azotobacter vinelandii
GN=hpf PE=3 SV=1
Length = 107
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 9/97 (9%)
Query: 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 162
I G L++TD ++++VEEK+ + + +H + V V ++V + ++ E TL
Sbjct: 5 ISGHQLDVTDALRDYVEEKISR-LERHFDRITSVQVIMTVEKLK-------QKIEATLHV 56
Query: 163 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE 199
VV A + E +YA+IDL++ + R+L K KEK+
Sbjct: 57 SGAEVV-ANAEHEDMYAAIDLLADKLDRQLIKHKEKQ 92
>sp|Q8KA32|Y080_BUCAP Uncharacterized protein BUsg_080 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_080 PE=4 SV=1
Length = 968
Score = 37.0 bits (84), Expect = 0.18, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 61 SYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEE 120
S+ + FF FK I R +K H L ++ W+ L ++ K L +T + H+
Sbjct: 584 SFPNKFFADFKNI---RFSKFHINSLHIKSDWNNINQKFSLSLKDKKLSITFILNGHLNR 640
Query: 121 KVG--KAVLKHSHLVREVDVRLS 141
KVG K VLK ++DV+ S
Sbjct: 641 KVGIWKGVLK------KIDVKTS 657
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,399,919
Number of Sequences: 539616
Number of extensions: 4967210
Number of successful extensions: 80435
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 49396
Number of HSP's gapped (non-prelim): 16464
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)