Query 020905
Match_columns 320
No_of_seqs 253 out of 1412
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fyl_A Ribosome hibernation pr 100.0 2E-29 6.9E-34 202.1 14.0 95 99-202 1-95 (95)
2 3ka5_A Ribosome-associated pro 100.0 3.2E-30 1.1E-34 193.2 7.5 59 242-300 2-60 (65)
3 3lyv_A Ribosome-associated fac 100.0 3.3E-30 1.1E-34 193.7 7.0 59 242-300 3-61 (66)
4 3k2t_A LMO2511 protein; lister 100.0 2.2E-30 7.4E-35 189.8 5.7 56 242-297 2-57 (57)
5 2ywq_A Protein Y, ribosomal su 100.0 7E-29 2.4E-33 201.7 12.8 103 98-204 1-103 (105)
6 3tqm_A Ribosome-associated fac 100.0 1.3E-28 4.5E-33 197.3 11.5 96 99-203 1-96 (96)
7 3v26_X ORF3, ORF95, probable s 100.0 3E-28 1E-32 197.6 11.7 98 99-205 1-98 (101)
8 3v2c_Y Ribosome-associated inh 99.9 1.9E-27 6.5E-32 198.3 12.3 97 99-204 1-97 (119)
9 1imu_A Hypothetical protein HI 99.9 1.1E-27 3.6E-32 195.8 10.4 97 99-204 1-97 (107)
10 1pu1_A Hypothetical protein MT 81.7 2.7 9.4E-05 33.1 5.6 58 132-197 37-94 (94)
11 3ueb_A Putative uncharacterize 64.6 9.2 0.00031 30.2 4.7 59 132-198 46-105 (110)
12 4hhu_A OR280; engineered prote 64.3 60 0.002 26.8 10.3 44 155-199 72-115 (170)
13 1lsh_B Lipovitellin (LV-2); vi 63.9 1.4 4.9E-05 41.8 0.0 33 163-195 139-172 (319)
14 1lsh_B Lipovitellin (LV-2); vi 54.4 2.6 9E-05 40.0 0.0 38 86-124 114-166 (319)
15 2rrl_A FLIK, flagellar HOOK-le 41.4 57 0.0019 28.1 6.4 71 112-193 68-139 (169)
16 2kxo_A Cell division topologic 38.2 1.2E+02 0.0042 23.4 7.4 59 99-164 22-83 (95)
17 3ku7_A MINE, cell division top 37.7 90 0.0031 23.6 6.3 56 99-163 23-79 (80)
18 3be3_A Uncharacterized protein 35.6 24 0.00081 27.6 2.8 25 273-297 28-55 (91)
19 2ia7_A Tail lysozyme, putative 30.1 1.7E+02 0.0059 23.1 7.4 39 103-143 62-100 (134)
20 3bbo_4 Ribosomal protein L34; 29.3 11 0.00039 31.7 0.0 68 1-75 1-73 (152)
21 1nnx_A Protein YGIW; structura 23.4 28 0.00097 27.8 1.3 25 265-290 50-74 (109)
22 1ghh_A DINI, DNA-damage-induci 23.0 1.9E+02 0.0064 21.8 5.8 43 99-141 1-45 (81)
23 2j73_A Pullulanase; alpha-gluc 22.5 31 0.0011 26.8 1.4 14 278-291 4-17 (103)
24 2cg8_A Dihydroneopterin aldola 22.1 4.4E+02 0.015 23.8 9.5 80 105-190 66-146 (270)
25 3f6g_B Alpha-isopropylmalate s 21.7 1.6E+02 0.0056 23.5 5.7 35 154-189 18-52 (127)
26 1lyp_A CAP18; lipopolysacchari 21.2 52 0.0018 20.2 1.9 15 188-202 2-16 (32)
No 1
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=99.96 E-value=2e-29 Score=202.07 Aligned_cols=95 Identities=33% Similarity=0.463 Sum_probs=88.9
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020905 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (320)
Q Consensus 99 MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~Y 178 (320)
|+|+|+|||+++||+|++||++||+| |+||++++.+|+|+|+++++. ++|||+|+++ |..|+|++.++|||
T Consensus 1 M~i~I~g~~i~vt~al~~~v~~Kl~k-l~k~~~~i~~~~V~l~~e~~~-------~~vei~i~~~-g~~l~a~~~~~d~y 71 (95)
T 4fyl_A 1 MQINIQGHHIDLTDSMQDYVHSKFDK-LERFFDHINHVQVILRVEKLR-------QIAEATLHVN-QAEIHAHADDENMY 71 (95)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHHH-HTTTCCCEEEEEEEEEEETTE-------EEEEEEEEET-TEEEEEEEEESSHH
T ss_pred CEEEEEEECCccCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEecCc-------EEEEEEEEeC-CcEEEEEEecCCHH
Confidence 99999999999999999999999999 899999999999999999753 8999999998 68999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhc
Q 020905 179 ASIDLVSSIIQRKLRKIKEKESDH 202 (320)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlk~~ 202 (320)
+|||.|+|||+|||+|||+|+++|
T Consensus 72 ~AiD~a~dklerQlrk~K~K~~~H 95 (95)
T 4fyl_A 72 AAIDSLVDKLVRQLNKHKEKLSSH 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999876
No 2
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=99.96 E-value=3.2e-30 Score=193.20 Aligned_cols=59 Identities=41% Similarity=0.785 Sum_probs=55.5
Q ss_pred eeEeeeccCCCCCHHHHHHHHhcCCCcEEEEeeCCCCceeEEEEecCCcEEEEEeCCCC
Q 020905 242 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNG 300 (320)
Q Consensus 242 IVr~K~~~lkPMsveEAV~QMEllghdF~vF~N~eTg~vnVVYRRkDG~YGLIeP~~~~ 300 (320)
|||+|.|+++|||+||||+|||++||+||||+|++||++||||||+||+||||+|..+.
T Consensus 2 iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~~~~ 60 (65)
T 3ka5_A 2 IVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGNYGLIEPELEH 60 (65)
T ss_dssp EEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSCEEEEECC---
T ss_pred eEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCCEEEEEeCccc
Confidence 79999999999999999999999999999999999999999999999999999998763
No 3
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=99.96 E-value=3.3e-30 Score=193.72 Aligned_cols=59 Identities=37% Similarity=0.633 Sum_probs=56.9
Q ss_pred eeEeeeccCCCCCHHHHHHHHhcCCCcEEEEeeCCCCceeEEEEecCCcEEEEEeCCCC
Q 020905 242 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNG 300 (320)
Q Consensus 242 IVr~K~~~lkPMsveEAV~QMEllghdF~vF~N~eTg~vnVVYRRkDG~YGLIeP~~~~ 300 (320)
|||+|.|+++|||+||||+|||++||+||||+|++||++||||||+||+||||+|..+.
T Consensus 3 iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~yGlI~p~~~~ 61 (66)
T 3lyv_A 3 VVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGNLGLIEAKLEH 61 (66)
T ss_dssp CCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSSEEEEEECCC-
T ss_pred EEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCCEEEEEeCccc
Confidence 79999999999999999999999999999999999999999999999999999998764
No 4
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=99.96 E-value=2.2e-30 Score=189.84 Aligned_cols=56 Identities=43% Similarity=0.735 Sum_probs=51.4
Q ss_pred eeEeeeccCCCCCHHHHHHHHhcCCCcEEEEeeCCCCceeEEEEecCCcEEEEEeC
Q 020905 242 IVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK 297 (320)
Q Consensus 242 IVr~K~~~lkPMsveEAV~QMEllghdF~vF~N~eTg~vnVVYRRkDG~YGLIeP~ 297 (320)
|||+|.|+++|||+||||+|||++||+||||+|++||++||||||+||+||||+|.
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~yGlI~p~ 57 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGKYGLIETN 57 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSCEEEECC-
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEeeC
Confidence 79999999999999999999999999999999999999999999999999999984
No 5
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=99.96 E-value=7e-29 Score=201.68 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=86.4
Q ss_pred ceEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCH
Q 020905 98 SVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 177 (320)
Q Consensus 98 ~MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~ 177 (320)
||+|+|+|+||++|++|++||++||+| |+||+++|.+|+|+|++++++ +++..++|||+|+++ |.+|+|++.++||
T Consensus 1 ~M~i~I~g~~i~~t~al~~~v~~kl~k-L~r~~~~i~~~~V~l~~e~~~--~~~~~~~~eitv~~~-g~~l~a~~~~~d~ 76 (105)
T 2ywq_A 1 MNIYKLIGRNLEITDAIRDYVEKKLAR-LDRYQDGELMAKVVLSLAGSP--HVEKKARAEIQVDLP-GGLVRVEEEDADL 76 (105)
T ss_dssp CEEEEEEEETSCCCHHHHHHHHHHHHG-GGGSCSSCCEEEEEEEECC--------CEEEEEEEEET-TEEEEEEEEESSH
T ss_pred CcEEEEEEecCcCCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEecCC--CCCCceEEEEEEEcC-CcEEEEEEccCCH
Confidence 699999999999999999999999998 999999999999999999864 222358999999998 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccC
Q 020905 178 YASIDLVSSIIQRKLRKIKEKESDHGR 204 (320)
Q Consensus 178 YaAID~A~dKLeRQLrK~KeKlk~~~r 204 (320)
|+|||.|+|||+|||+|+|+|+++|++
T Consensus 77 y~Aid~a~dklerqL~k~k~K~~~~~~ 103 (105)
T 2ywq_A 77 YAAIDRAVDRLETQVKRFRERRYVGKR 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999998864
No 6
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=99.95 E-value=1.3e-28 Score=197.32 Aligned_cols=96 Identities=14% Similarity=0.360 Sum_probs=88.0
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020905 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (320)
Q Consensus 99 MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~Y 178 (320)
|+|+|+|+||++||+|++||++||+| |+||++++.+|+|+|+++++ .++|||+|+++ |.+|+|++.++|||
T Consensus 1 M~i~i~g~~i~~t~al~~~v~~kl~k-L~k~~~~i~~~~V~l~~e~~-------~~~~ei~i~~~-g~~l~a~~~~~d~y 71 (96)
T 3tqm_A 1 MHIQMTGQGVDISPALRELTEKKLHR-IQPCRDEISNIHIIFHINKL-------KKIVDANVKLP-GSTINAQAESDDMY 71 (96)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHTT-CCSSGGGCCEEEEEEEEETT-------EEEEEEEEEET-TEEEEEEECCSCHH
T ss_pred CEEEEEEEcccCCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEeCC-------ceEEEEEEEeC-CcEEEEEEecCCHH
Confidence 99999999999999999999999999 99999999999999999975 38999999999 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcc
Q 020905 179 ASIDLVSSIIQRKLRKIKEKESDHG 203 (320)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlk~~~ 203 (320)
+|||.|+|||+|||+|+|+|+++|+
T Consensus 72 ~Aid~a~dklerqL~k~k~k~~~h~ 96 (96)
T 3tqm_A 72 KTVDLLMHKLETQLSKYKAKKGDHR 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999874
No 7
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=99.95 E-value=3e-28 Score=197.60 Aligned_cols=98 Identities=29% Similarity=0.430 Sum_probs=91.2
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020905 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (320)
Q Consensus 99 MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~Y 178 (320)
|+|+|+|+||++||+|++||++||+| |+||+++|.+|+|+|+.+++. ++|||+|+++ |.+|+|++.++|||
T Consensus 1 M~i~I~g~~ie~t~alr~~ve~Kl~k-L~k~~d~i~~~~V~l~~e~~~-------~~~eitv~~~-G~~l~ae~~~~d~y 71 (101)
T 3v26_X 1 MQLNITGNNVEITEALREFVTAKFAK-LEQYFDRINQVYVVLKVEKVT-------HTSDATLHVN-GGEIHASAEGQDMY 71 (101)
T ss_dssp CCEEEECSSSCCCHHHHHHHHHHHHH-HHTTCSCCCCEEEEEEECSSC-------EEEEEEECST-TCCEEEEECCSSSS
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHH-HHhhcCCCeEEEEEEEEcCCC-------EEEEEEEEcC-CceEEEEEecCCHH
Confidence 89999999999999999999999999 999999999999999999753 8999999999 56999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccCC
Q 020905 179 ASIDLVSSIIQRKLRKIKEKESDHGRH 205 (320)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlk~~~r~ 205 (320)
+|||.|+|||+|||+|+|+|++.|+.+
T Consensus 72 aAID~a~dkLerQLrK~K~k~~~~~~~ 98 (101)
T 3v26_X 72 AAIDGLIDKLARQLTKHKDKLKQHHHH 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999987643
No 8
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=99.95 E-value=1.9e-27 Score=198.31 Aligned_cols=97 Identities=23% Similarity=0.361 Sum_probs=91.0
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020905 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (320)
Q Consensus 99 MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~Y 178 (320)
|+|+|+|+||++|++|++||++||+| |+||+++|++|+|+|+++++. ++|||+|+++ |.+|+|++.++|||
T Consensus 1 M~i~I~g~~ievt~alr~~ve~Kl~k-L~k~~d~i~~~~V~ls~e~~~-------~~veiti~~~-G~~l~ae~~~~D~y 71 (119)
T 3v2c_Y 1 MTMNITSKQMEITPAIRQHVADRLAK-LEKWQTHLINPHIILSKEPQG-------FVADATINTP-NGVLVASGKHEDMY 71 (119)
T ss_dssp -CCEEEEETSCCCHHHHHHHHHHGGG-GGGGCCCCEEEEEEEECCSSC-------EEEEEEEEET-TEEEEEEEEESSHH
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHH-HHHhcCCCeEEEEEEEEeCCC-------EEEEEEEEcC-CceEEEEEcCCCHH
Confidence 89999999999999999999999999 999999999999999998753 8999999999 56999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccC
Q 020905 179 ASIDLVSSIIQRKLRKIKEKESDHGR 204 (320)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlk~~~r 204 (320)
+|||.|+|||+|||+|+|+|+++|++
T Consensus 72 aAID~a~dkLerQLrK~K~K~~~~~~ 97 (119)
T 3v2c_Y 72 TAINELINKLERQLNKLQHKGEARRA 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999998865
No 9
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=99.95 E-value=1.1e-27 Score=195.84 Aligned_cols=97 Identities=22% Similarity=0.320 Sum_probs=92.0
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHH
Q 020905 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 178 (320)
Q Consensus 99 MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~Y 178 (320)
|+|+|+|+||++|++|++||++||+| |+||++++.+|+|+|+++++ .++|||+|+++ |..|+|++.++|||
T Consensus 1 M~i~I~g~~i~~t~alr~~v~~kl~k-L~r~~~~i~~~~V~l~~e~~-------~~~~ei~i~~~-g~~l~a~~~~~d~y 71 (107)
T 1imu_A 1 MTLNITSKQMDITPAIREHLEERLAK-LGKWQTQLISPHFVLNKVPN-------GFSVEASIGTP-LGNLLASATSDDMY 71 (107)
T ss_dssp CCCEECCSSSCCCHHHHHHHHHHHHH-HHTSSCCCSSCEEEEEEETT-------EEEEEEEECCT-TCCEEEEEEESCHH
T ss_pred CEEEEEEecCcCCHHHHHHHHHHHHH-HHHhcCCCcEEEEEEEEcCC-------ceEEEEEEEcC-CCEEEEEEecCCHH
Confidence 89999999999999999999999999 99999999999999999964 48999999999 56899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhccC
Q 020905 179 ASIDLVSSIIQRKLRKIKEKESDHGR 204 (320)
Q Consensus 179 aAID~A~dKLeRQLrK~KeKlk~~~r 204 (320)
+|||.|+|||+|||+|+|+|+++|++
T Consensus 72 ~AiD~a~dkLerqLrk~k~K~~~~~~ 97 (107)
T 1imu_A 72 KAINEVEEKLERQLNKLQHKSESRRA 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999988764
No 10
>1pu1_A Hypothetical protein MTH677; structural genomics, alpha and beta protein (A+B), unknown function; NMR {Methanothermobacterthermautotrophicus} SCOP: d.266.1.1
Probab=81.74 E-value=2.7 Score=33.06 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=37.1
Q ss_pred CceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeeccCHHHHHHHHHHHHHHHHHHHHh
Q 020905 132 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 197 (320)
Q Consensus 132 ~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~D~YaAID~A~dKLeRQLrK~Ke 197 (320)
.|.+.+|.+....+. .-..-++|-|.++ .. ++..-.=...|||.|..++++.|+.|++
T Consensus 37 Ei~Dldi~v~v~~~~----~Ldvdvdv~l~~d--~l--sk~D~~ivdeAi~~AY~~ie~yl~d~r~ 94 (94)
T 1pu1_A 37 EIVDIDITVLVEYTD----ELKVDISAELYLD--EL--SDADPGIVDEAVDAAYRSLESFLDGFRE 94 (94)
T ss_dssp TEEEEEEEEEEEESS----SEEEEEEEEEEEC--TT--CCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhcceeEEEEccCC----ceeeEEEEEEEeC--ch--hhcCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567777777776542 1223455555554 22 3333366778999999999999987763
No 11
>3ueb_A Putative uncharacterized protein; alpha and beta protein (A+B), unknown function; 1.98A {Thermococcus onnurineus}
Probab=64.57 E-value=9.2 Score=30.19 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=33.1
Q ss_pred CceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEe-eccCHHHHHHHHHHHHHHHHHHHHhH
Q 020905 132 LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE-DAETVYASIDLVSSIIQRKLRKIKEK 198 (320)
Q Consensus 132 ~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee-~~~D~YaAID~A~dKLeRQLrK~KeK 198 (320)
.+.++.|+.....+. .-.-..||-+.+| |++.. ...=+..|++.|.+++++.||+...+
T Consensus 46 eVkDiEVT~riNr~e----TLdLElEvYlEVP----iFVkVDVe~lideA~e~AYe~VE~~Lreia~~ 105 (110)
T 3ueb_A 46 EVKDIEVTMRINREE----TLDLEIEVYLEVP----IFVKVDVDKLIDEAVERAYEIVERKLREIANE 105 (110)
T ss_dssp GCSEEEEEEEECTTT----SSEEEEEEEEECC----TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccceeEEEeecCCC----ccceEEEEEEEee----eEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456677776665432 1223444444444 23322 22334567777788888888877644
No 12
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=64.28 E-value=60 Score=26.77 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=31.3
Q ss_pred EEEEEEEcCCCceEEEEeeccCHHHHHHHHHHHHHHHHHHHHhHh
Q 020905 155 RCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKE 199 (320)
Q Consensus 155 ~vEVtV~~~~g~~IrAee~~~D~YaAID~A~dKLeRQLrK~KeKl 199 (320)
.|.-+|...+.++....-.++|+.+ +..|+..+-||.||+..-.
T Consensus 72 ~v~y~imgsgsgvm~i~f~gddlea-~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 72 NVQYQIMGSGSGVMVIVFEGDDLEA-LEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp EEEEEEECTTCCEEEEEEECSCHHH-HHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEEEeCCceEEEEEEecCcHHH-HHHHHHHHHHHHHhhcceE
Confidence 3444555554457777778888865 9999999999998876543
No 13
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=63.92 E-value=1.4 Score=41.77 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=20.6
Q ss_pred CCCceEEEEeeccCHHHHHHHHHHHHHHH-HHHH
Q 020905 163 KKHGVVRAEEDAETVYASIDLVSSIIQRK-LRKI 195 (320)
Q Consensus 163 ~~g~~IrAee~~~D~YaAID~A~dKLeRQ-LrK~ 195 (320)
+.+..++.+-.=+++-..+-....++..- |+-+
T Consensus 139 ~~~Paar~kv~w~~lP~~~k~~~~k~y~~~i~~~ 172 (319)
T 1lsh_B 139 QSHPAARVDIKWGRLPSSLQRAKNALLENGAPVI 172 (319)
T ss_dssp SSSEEEEEEEEECCCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCccEEEEEEeccCCHHHHHHHHHHHhcccchh
Confidence 33456666666667766666666666665 6544
No 14
>1lsh_B Lipovitellin (LV-2); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: f.7.1.1
Probab=54.39 E-value=2.6 Score=39.95 Aligned_cols=38 Identities=5% Similarity=0.204 Sum_probs=22.4
Q ss_pred cceeeecCCCCCceEEEEEeee---------------cccCHHHHHHHHHHHHH
Q 020905 86 LPVRMSWDGPLSSVKLIIQGKN---------------LELTDTVKNHVEEKVGK 124 (320)
Q Consensus 86 ~~~~~~~~~~~~~MkI~ItgRn---------------velTdaLkeyIeeKl~K 124 (320)
+-+.+.|+..-..-+|.|+|.- =+|+..+++|..+ +.+
T Consensus 114 v~a~l~wG~eCq~y~i~i~getg~l~~~Paar~kv~w~~lP~~~k~~~~k-~y~ 166 (319)
T 1lsh_B 114 AKAAIGWGKNCQQYRAMLEASTGNLQSHPAARVDIKWGRLPSSLQRAKNA-LLE 166 (319)
T ss_dssp EEEEEEESSSSCSEEEEEEEEEEESSSSEEEEEEEEECCCCHHHHHHHHH-HHH
T ss_pred EEEEEEeCCcCcceEEEEEEEeecccCCccEEEEEEeccCCHHHHHHHHH-HHh
Confidence 3478889887543344443321 1367888887765 545
No 15
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=41.43 E-value=57 Score=28.09 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCC-ceEEEEeeccCHHHHHHHHHHHHHH
Q 020905 112 DTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKH-GVVRAEEDAETVYASIDLVSSIIQR 190 (320)
Q Consensus 112 daLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g-~~IrAee~~~D~YaAID~A~dKLeR 190 (320)
..+.+.+.+||...+. ..+..++|+|.-+.-. .++|+|.+.+| ..+.-.........+|+..+.+|+.
T Consensus 68 ~~w~qqL~qqI~~~~~---~g~q~a~IrL~PpeLG--------~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe 136 (169)
T 2rrl_A 68 HEWQQTFSQQVMLFTR---QGQQSAQLRLHPEELG--------QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRT 136 (169)
T ss_dssp HHHHHHHHHHHHHHHH---HTCCEEEECCSSGGGC--------CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CCceEEEEEECccccC--------cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4555556666655222 2466788877765421 36666665533 2344445566666666666666655
Q ss_pred HHH
Q 020905 191 KLR 193 (320)
Q Consensus 191 QLr 193 (320)
.|.
T Consensus 137 ~La 139 (169)
T 2rrl_A 137 QLA 139 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 16
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=38.19 E-value=1.2e+02 Score=23.42 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=39.4
Q ss_pred eEEEEEeeec--ccCHHHHHHHHHHHHHHHhhhCC-CceEEEEEEEeecCcCCCCCceeEEEEEEEcCC
Q 020905 99 VKLIIQGKNL--ELTDTVKNHVEEKVGKAVLKHSH-LVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 164 (320)
Q Consensus 99 MkI~ItgRnv--elTdaLkeyIeeKl~K~L~Ky~d-~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~ 164 (320)
.++.+..... .+++.+-+.+.+-|-.++.||.+ +...++|.|+.+.+ .-..+++|.+++
T Consensus 22 LqlILahdR~~~~~~pd~l~~lk~eIl~VIsKYv~Id~~~v~V~l~~~~~-------~~vL~~nIpl~~ 83 (95)
T 2kxo_A 22 LQIIIAQERAQEGQTPDYLPTLRKALMEVLSKYVNVSLDNIRISQEKQDG-------MDVLELNITLPE 83 (95)
T ss_dssp EEEEEEEEECSSCCCCCSHHHHHHHHHHHHHHHSCCCTTSEEEEEEEETT-------EEEEEEEEEECC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHheecchhheEEEEEeCCC-------cEEEEEEEEeCC
Confidence 6666655554 57777777777887788999986 23467777776532 246777777763
No 17
>3ku7_A MINE, cell division topological specificity factor; cell cycle; 2.80A {Helicobacter pylori} PDB: 3mcd_A
Probab=37.66 E-value=90 Score=23.57 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=35.4
Q ss_pred eEEEEEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEE-EeecCcCCCCCceeEEEEEEEcC
Q 020905 99 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRL-SVRGGEFGKGPRIRRCEVTLFTK 163 (320)
Q Consensus 99 MkI~ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~L-s~e~~~~~kg~~~~~vEVtV~~~ 163 (320)
.++.+.... ..++.+-+.+.+-|-.++.||.+ +..++|.+ ..++ ..-..|++|.+|
T Consensus 23 LqliLa~dR-~~~p~~l~~lk~eil~VIskYv~-id~v~V~l~e~~~-------~~~vLe~nI~lp 79 (80)
T 3ku7_A 23 LKLILAKER-TLNLPYMEEMRKEIIAVIQKYTK-SSDIHFKTLDSNQ-------SVETIEVEIILP 79 (80)
T ss_dssp EEEEEEEES-SCCCTTHHHHHHHHHHHHHHHHC-CCEEEEECC---C-------CEEEEEEEEECC
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHcC-ccceEEEEEecCC-------CEEEEEEEeecC
Confidence 666665544 35566667777777777999986 56666665 3221 245778888776
No 18
>3be3_A Uncharacterized protein; PFAM DUF1653, PSI-2, structural genomics, protein structure initiative; 2.04A {Bordetella bronchiseptica RB50}
Probab=35.55 E-value=24 Score=27.56 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred eeCCCCceeEEEEecCCcEE---EEEeC
Q 020905 273 RNEETGEINIVYKRKAGGYG---VIIPK 297 (320)
Q Consensus 273 ~N~eTg~vnVVYRRkDG~YG---LIeP~ 297 (320)
+..||++.=||||.--|++| |++|.
T Consensus 28 ~HSET~E~mVVYraLYgd~~~~lWvRPl 55 (91)
T 3be3_A 28 RADETDEVVVVYTRLYARAGLPMSTRLL 55 (91)
T ss_dssp EETTTTEEEEEEEESSCCSSCSEEEEEH
T ss_pred EEcCCCcEEEEEEeccCCCCccEEeccH
Confidence 68899999999999878888 89995
No 19
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=30.11 E-value=1.7e+02 Score=23.14 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=30.7
Q ss_pred EEeeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEee
Q 020905 103 IQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVR 143 (320)
Q Consensus 103 ItgRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e 143 (320)
+.+.++ +++++..+...+..+|.+|-+++.-.+|.+...
T Consensus 62 li~~~~--~~~~~~~i~~~i~~al~~~EPRi~~~~V~v~~~ 100 (134)
T 2ia7_A 62 RVFSVI--NTTTLGLIENEVKEALILWEPRIELLSVTASPR 100 (134)
T ss_dssp CCCSCC--CHHHHHHHHHHHHHHHHHHCTTEEEEEEEEECT
T ss_pred HhCCCC--CHHHHHHHHHHHHHHHHHhCCCeEEEEEEEeec
Confidence 334443 788888999998888999998998888887754
No 20
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.31 E-value=11 Score=31.68 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=0.0
Q ss_pred Ccccccc-----eeecCCCCCCCceeeccCCCCCccCCCCCCCCCCCCCCCCcccccccccccccccCcccccccceeee
Q 020905 1 MATLSTS-----FKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGPFKQITV 75 (320)
Q Consensus 1 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (320)
||.+++. +.-+.-+|++|+...+.+-..+..-..+-+++.+--+-.+|.++. ++..+.|-|-++.+.+
T Consensus 1 ma~~~~~~~~~~~~~~~~~p~~s~s~~~~~r~~~~~~~~~~~~a~s~~l~~sf~ss~-------~s~~ssf~G~sl~~~l 73 (152)
T 3bbo_4 1 MATLSLLSTGVGAAITNRTPSASLTFITGSRTTNKRVSFNGGSARSGSLHCSFLAPS-------SSLSSNFSGLSLGLDL 73 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccccccceeeccCCCccccccccccccccccccccccccCcceeeeecccc-------ccCCCccccccccccc
Confidence 6666663 233445556666555544433333333444444445555665533 6667888887766553
No 21
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=23.35 E-value=28 Score=27.81 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=20.3
Q ss_pred CCCcEEEEeeCCCCceeEEEEecCCc
Q 020905 265 VDHDFYGFRNEETGEINIVYKRKAGG 290 (320)
Q Consensus 265 lghdF~vF~N~eTg~vnVVYRRkDG~ 290 (320)
+|++=|+|+|. ||+|.|---.+.++
T Consensus 50 ~~~d~Y~F~D~-TG~I~VeId~~~w~ 74 (109)
T 1nnx_A 50 ISDDLYVFKDA-SGTINVDIDHKRWN 74 (109)
T ss_dssp EETTEEEEEET-TEEEEEECCGGGST
T ss_pred eCCCeEEEECC-CccEEEEEChhhcC
Confidence 58999999996 99999986655553
No 22
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=22.98 E-value=1.9e+02 Score=21.82 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=23.4
Q ss_pred eEEEEEe-eecccCHHHHHHHHHHHHHHHhhhCCCc-eEEEEEEE
Q 020905 99 VKLIIQG-KNLELTDTVKNHVEEKVGKAVLKHSHLV-REVDVRLS 141 (320)
Q Consensus 99 MkI~Itg-RnvelTdaLkeyIeeKl~K~L~Ky~d~I-~~a~V~Ls 141 (320)
|.|+|+. |.-.+++...+-++..|.|-|.+.|++. ..++|...
T Consensus 1 MrVEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~ 45 (81)
T 1ghh_A 1 MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYA 45 (81)
T ss_dssp CEEEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEEEE
T ss_pred CeEEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEeec
Confidence 6777776 3336664444445555544455556654 35555544
No 23
>2j73_A Pullulanase; alpha-glucan binding, glucosyl- maltotriose, carbohydrate-binding module, hydrolase, glycosidase, beta-sandwich fold; HET: GLC; 1.4A {Thermotoga maritima} SCOP: b.3.1.3 PDB: 2j71_A* 2j72_A*
Probab=22.52 E-value=31 Score=26.83 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=12.7
Q ss_pred CceeEEEEecCCcE
Q 020905 278 GEINIVYKRKAGGY 291 (320)
Q Consensus 278 g~vnVVYRRkDG~Y 291 (320)
+.+.|-|+|.||+|
T Consensus 4 ~~v~ihY~r~dg~Y 17 (103)
T 2j73_A 4 TTIVVHYHRYDGKY 17 (103)
T ss_dssp EEEEEEEECTTCCC
T ss_pred ceEEEEEECCCCCc
Confidence 67899999999998
No 24
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=22.07 E-value=4.4e+02 Score=23.78 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=48.2
Q ss_pred eeecccCHHHHHHHHHHHHHHHhhhCCCceEEEEEEEeecCcCCCCCceeEEEEEEEcCCCceEEEEeecc-CHHHHHHH
Q 020905 105 GKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE-TVYASIDL 183 (320)
Q Consensus 105 gRnvelTdaLkeyIeeKl~K~L~Ky~d~I~~a~V~Ls~e~~~~~kg~~~~~vEVtV~~~~g~~IrAee~~~-D~YaAID~ 183 (320)
+.++++=|++-+.|-+.+ +.+| +.+..++|.+.+..-.. ++....|.|.+.-..+..+.+=+.+- |-.+-|..
T Consensus 66 ~~~f~LiE~lA~~Ia~~l---l~~~-~~v~~V~V~v~Kp~api--~~~~~~v~Vei~R~~~~~~i~lGsN~gd~~~~l~~ 139 (270)
T 2cg8_A 66 ETSEDLIETVAYKLVERT---FESY-PLVQEMKLELKKPWAPV--HLSLDTCSVTIHRRKQRAFIALGSNMGDKQANLKQ 139 (270)
T ss_dssp SCCCSCHHHHHHHHHHHH---HHHC-TTCCEEEEEEEETTCSC--CSCCSCEEEEEEEECEEEEEEEEECSSSHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHH---HHhc-CCceEEEEEEeeccccc--cccccccccccccccceEEEecCCCCCCHHHHHHH
Confidence 345555555555554444 3344 67899999998876431 11123466655543345666667665 88888888
Q ss_pred HHHHHHH
Q 020905 184 VSSIIQR 190 (320)
Q Consensus 184 A~dKLeR 190 (320)
|++.|..
T Consensus 140 A~~~L~~ 146 (270)
T 2cg8_A 140 AIDKLRA 146 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8877764
No 25
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=21.67 E-value=1.6e+02 Score=23.50 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=27.9
Q ss_pred eEEEEEEEcCCCceEEEEeeccCHHHHHHHHHHHHH
Q 020905 154 RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 189 (320)
Q Consensus 154 ~~vEVtV~~~~g~~IrAee~~~D~YaAID~A~dKLe 189 (320)
..+.|+|..+ |..+...+.+.-...|++.|++++-
T Consensus 18 ~~a~v~l~~~-g~~~~~~a~GnGPVdA~~~Al~~~~ 52 (127)
T 3f6g_B 18 PHAQIELEYQ-GKIHKEISEGDGGYDAFMNALTKIT 52 (127)
T ss_dssp CEEEEEEEET-TEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred eEEEEEEEEC-CEEEEEEEEccCHHHHHHHHHHHHh
Confidence 4677888776 6788899999999888888877654
No 26
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=21.19 E-value=52 Score=20.24 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHhhhc
Q 020905 188 IQRKLRKIKEKESDH 202 (320)
Q Consensus 188 LeRQLrK~KeKlk~~ 202 (320)
|+++|||++.|++.+
T Consensus 2 lrkrlrkfrnkikek 16 (32)
T 1lyp_A 2 LRKRLRKFRNKIKEK 16 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777776654
Done!