Citrus Sinensis ID: 020905


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSSQNN
ccccccCEccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccCEEEEEEECccccEEEEEECccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccccccccccccccccccc
********KLSTSRPVPSSCYLSSSS*********************************LSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIK***************************************NFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPK***********************
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MATLSTSFKLSTSRPVPSSCYLSSSSSSSSSSSSSSSSSSSSSSVSPFVTPRKSQLAKTLSYNSSFFGPFKQITVMRPTKVHTKPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPVTQVVENDADVQSEEEDDNFVDEVIVRMKFFEMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGVIIPKGNGKAKKLEPLEVETASSSSQNN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ribosome-binding factor PSRP1, chloroplastic May have a specific function in chloroplast development other than its participation in the small ribosomal subunit. Modeling onto the 70S ribosome suggests it binds in the decoding region of the 30S ribosomal subunit which would preclude the binding of mRNA and tRNA to the ribosome, suggesting that PSRP1 might be a translation factor.probableP19954

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YWQ, chain A
Confidence level:very confident
Coverage over the Query: 99-196
View the alignment between query and template
View the model in PyMOL
Template: 3LYV, chain A
Confidence level:very confident
Coverage over the Query: 242-299
View the alignment between query and template
View the model in PyMOL