Query 020906
Match_columns 320
No_of_seqs 183 out of 1691
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.0 2.1E-05 7.1E-10 60.1 8.4 71 125-195 34-105 (110)
2 2i68_A Protein EMRE; transmemb 97.9 2.1E-05 7E-10 62.5 6.4 69 126-194 35-104 (137)
3 3o7q_A L-fucose-proton symport 12.4 6.8E+02 0.023 21.6 12.7 14 59-72 279-293 (438)
4 4dve_A Biotin transporter BIOY 12.1 5.8E+02 0.02 20.6 9.4 100 119-225 15-122 (198)
5 3mp7_B Preprotein translocase 5.2 7E+02 0.024 16.0 3.5 31 26-58 21-51 (61)
6 2akh_X Protein-export membrane 4.9 5.5E+02 0.019 17.2 2.9 24 40-63 52-75 (77)
7 2ot8_C HnRNP M, heterogeneous 4.2 3.3E+02 0.011 14.8 1.0 15 18-32 4-18 (30)
8 3tij_A NUPC family protein; me 3.8 9.5E+02 0.033 22.0 4.4 51 43-96 264-317 (424)
9 1g1s_C PSGL-1 peptide, PSGL-1; 3.6 3.6E+02 0.012 14.1 0.8 11 10-20 12-22 (28)
10 3ul0_C Nuclear CAP-binding pro 3.4 4.5E+02 0.015 13.4 1.0 15 18-32 8-22 (26)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.02 E-value=2.1e-05 Score=60.12 Aligned_cols=71 Identities=10% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhhhhcCcchhHHHHH-HhhHHHHHHHHHHHHhccccCcchhhHHHHHhhhhhhhcccC
Q 020906 125 LPLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD 195 (320)
Q Consensus 125 ~~~si~~~~~~~~~~~sl~~~svs~~~v~-ks~~p~~~~l~~~~~~~~~~s~~~~~sl~li~~Gv~l~~~~d 195 (320)
+...+.+.+..++...++++.|++..-.+ ..+.|+++.+.+++++||++++.+++++.++++|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33344677888888999999999999887 899999999999999999999999999999999998875543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.89 E-value=2.1e-05 Score=62.49 Aligned_cols=69 Identities=10% Similarity=0.186 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhhhhcCcchhHHHHH-HhhHHHHHHHHHHHHhccccCcchhhHHHHHhhhhhhhccc
Q 020906 126 PLAVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194 (320)
Q Consensus 126 ~~si~~~~~~~~~~~sl~~~svs~~~v~-ks~~p~~~~l~~~~~~~~~~s~~~~~sl~li~~Gv~l~~~~ 194 (320)
...+.+.+..++.+.++++.|++....+ ..+.|++++++++++++|++++.+++++.++++|+.+....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344677888899999999999977777 99999999999999999999999999999999999987543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.41 E-value=6.8e+02 Score=21.60 Aligned_cols=14 Identities=0% Similarity=-0.159 Sum_probs=7.1
Q ss_pred HHHHHH-HhhcCCCC
Q 020906 59 VMFNKA-ALSSYNFP 72 (320)
Q Consensus 59 ~~~NK~-ll~~~~f~ 72 (320)
.....+ +-+.++++
T Consensus 279 ~~~~~~~~~~~~g~~ 293 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMT 293 (438)
T ss_dssp HHHHHHHHHHSTTCC
T ss_pred HHHHHHhhhccCCcc
Confidence 455566 44434554
No 4
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=12.13 E-value=5.8e+02 Score=20.63 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh---hcCcchhHHHHHHhhHHHHHHHHHHHHhccccCcchhhHHHHHhhhhhhhcccC
Q 020906 119 KTLMHTLPLAVAYLLYMVVSVES---VRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGARD 195 (320)
Q Consensus 119 ~~~~~~~~~si~~~~~~~~~~~s---l~~~svs~~~v~ks~~p~~~~l~~~~~~~~~~s~~~~~sl~li~~Gv~l~~~~d 195 (320)
++.|.+..++++-++..+++..+ +-..|||. .++...+++.+.++..++=.....+-+++..+|.=+++.+.
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg~ 89 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGGN 89 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTTB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCCC
Confidence 45677777777766666666542 33344553 46677788888777666655566666667777764443332
Q ss_pred --cc---cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020906 196 --LS---FDFFGYAVVFLANITTAIYLATIARIGK 225 (320)
Q Consensus 196 --~~---~~~~G~~~~l~s~~~~a~~~v~~~~~~~ 225 (320)
.. -.-.||+++..-+..-+.+ +.+|..+
T Consensus 90 gG~~~l~gPTgGYLiGF~~aA~v~G~--l~~~~~~ 122 (198)
T 4dve_A 90 GGAASFLGPSGGYRIAWLFTPFLIGF--FLKKLKI 122 (198)
T ss_dssp CCSGGGGSTTHHHHHHHHHHHHHHHH--HHHHTTG
T ss_pred CchhHHhcchhHHHHHHHHHHHHHHH--HHHHccc
Confidence 11 1236887776644433333 3455433
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.22 E-value=7e+02 Score=15.99 Aligned_cols=31 Identities=13% Similarity=0.039 Sum_probs=17.5
Q ss_pred hhccccccccccchhhhhhHHHHHHHHHHHHHH
Q 020906 26 RLLKGDEKLFRGSAMTRRGANAAISYMACAVLL 58 (320)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 58 (320)
+.+|||++-|.+.. +...+.+++-++.+..+
T Consensus 21 ~~~KPd~~Ef~~ia--k~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 21 VTKKPNWATYKRAA--KITGLGIILIGLIGMLI 51 (61)
T ss_dssp HSCCCCTTHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66888877666554 33344444455544443
No 6
>2akh_X Protein-export membrane protein SECG; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_X
Probab=4.90 E-value=5.5e+02 Score=17.17 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 020906 40 MTRRGANAAISYMACAVLLVMFNK 63 (320)
Q Consensus 40 ~~~~~~~~~~~~~~~s~~~~~~NK 63 (320)
+.|.+.....+|+.+++.+.++++
T Consensus 52 L~k~T~~la~~F~v~sl~l~~~~~ 75 (77)
T 2akh_X 52 MTRMTALLATLFFIISLVLGNINS 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777789999998877665
No 7
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=4.16 E-value=3.3e+02 Score=14.77 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=8.8
Q ss_pred CCCchhhhhhccccc
Q 020906 18 RGDEGEKERLLKGDE 32 (320)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (320)
+..|+.||+..|+--
T Consensus 4 ~~~e~rkEk~~Krgg 18 (30)
T 2ot8_C 4 AQNEKRKEKNIKRGG 18 (30)
T ss_pred cccchhhccccccCC
Confidence 345566777666543
No 8
>3tij_A NUPC family protein; membrane transporter, nucleoside transporter, drug transport uridine, nucleosides, membrane protein; HET: URI DMU; 2.44A {Vibrio cholerae}
Probab=3.79 E-value=9.5e+02 Score=21.97 Aligned_cols=51 Identities=14% Similarity=0.043 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHhh--cCCCCchHHHHHHHHHHHHHHHHHHHHcc
Q 020906 43 RGANAAISYMACAVLL-VMFNKAALS--SYNFPCANVITLLQMISSCSFLYFLRRWK 96 (320)
Q Consensus 43 ~~~~~~~~~~~~s~~~-~~~NK~ll~--~~~f~~p~~L~~~q~~~~~l~~~~~~~~~ 96 (320)
|.++.+.+-..+-+++ .++|..+-. ++ +.+|- ..+|.+++.++.=+....|
T Consensus 264 kla~~I~AmLIaFvALiAliN~~l~~ig~~-~g~~~--lSlq~IlGyif~P~A~lmG 317 (424)
T 3tij_A 264 QLALNVGAMLIAFIGLIALINGMLGGIGGW-FGMPE--LKLEMLLGWLFAPLAFLIG 317 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GTCTT--CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCC--ccHHHHHHHHhHHHHHHhC
Confidence 3444444444444443 345664321 11 22231 3467777776665555555
No 9
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=3.62 E-value=3.6e+02 Score=14.10 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=7.5
Q ss_pred CccccCCCCCC
Q 020906 10 MLPVSEPARGD 20 (320)
Q Consensus 10 ~~~~~~~~~~~ 20 (320)
.+|.-+||+..
T Consensus 12 flpetepp~~~ 22 (28)
T 1g1s_C 12 FLPETEPPRPM 22 (28)
T ss_pred ccccCCCCccc
Confidence 56777887653
No 10
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=3.36 E-value=4.5e+02 Score=13.42 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=8.9
Q ss_pred CCCchhhhhhccccc
Q 020906 18 RGDEGEKERLLKGDE 32 (320)
Q Consensus 18 ~~~~~~~~~~~~~~~ 32 (320)
-++|.++++..|+..
T Consensus 8 hsdendggq~hkrr~ 22 (26)
T 3ul0_C 8 HSDENDGGQPHKRRK 22 (26)
T ss_dssp CTTSCSSCCCSCCCC
T ss_pred cccccCCCCcccccc
Confidence 356666666666443
Done!