Query 020906
Match_columns 320
No_of_seqs 183 out of 1691
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 09:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 9.0 1.2E+02 0.0088 14.5 2.9 18 201-218 3-20 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.9 5.5E+02 0.04 19.5 7.0 54 123-180 4-57 (248)
3 d2heyr2 g.24.1.1 (R:143-166) T 5.3 1.1E+02 0.008 14.4 0.9 6 2-7 16-21 (26)
4 d1r0va1 c.52.2.1 (A:62-139) Di 4.2 66 0.0048 19.3 -0.6 12 6-17 28-39 (78)
5 d2h5na1 a.287.1.2 (A:1-132) Hy 3.6 2.9E+02 0.021 17.8 2.3 29 184-213 89-117 (132)
6 d1wiva_ a.5.2.1 (A:) Ubiquitin 3.1 2.8E+02 0.021 16.8 1.8 28 4-31 2-29 (73)
7 d1ml4a2 c.78.1.1 (A:152-308) A 2.9 3.2E+02 0.023 18.7 2.2 25 15-39 116-140 (157)
8 d1pg5a2 c.78.1.1 (A:147-299) A 2.7 3.1E+02 0.023 18.8 2.0 24 16-39 114-137 (153)
9 d2iuba2 f.17.3.1 (A:286-349) M 2.5 5.8E+02 0.042 14.4 3.4 24 121-144 6-30 (64)
10 d1l2wi_ d.198.1.1 (I:) YopE ch 2.4 2.3E+02 0.017 15.8 0.6 17 292-308 39-55 (57)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.05 E-value=1.2e+02 Score=14.54 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020906 201 FGYAVVFLANITTAIYLA 218 (320)
Q Consensus 201 ~G~~~~l~s~~~~a~~~v 218 (320)
.|.+..-++.+++|.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777777888887754
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.91 E-value=5.5e+02 Score=19.46 Aligned_cols=54 Identities=17% Similarity=-0.065 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCcchhHHHHHHhhHHHHHHHHHHHHhccccCcchhhH
Q 020906 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGS 180 (320)
Q Consensus 123 ~~~~~si~~~~~~~~~~~sl~~~svs~~~v~ks~~p~~~~l~~~~~~~~~~s~~~~~s 180 (320)
+|+.++++.++..+.....+..-+..+.. ...+.+.++.++++.+|.-+.+++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 45667777766666555555444444433 4556677777888888776666643
No 3
>d2heyr2 g.24.1.1 (R:143-166) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.34 E-value=1.1e+02 Score=14.42 Aligned_cols=6 Identities=83% Similarity=0.739 Sum_probs=3.7
Q ss_pred CCCCCC
Q 020906 2 ASNSSK 7 (320)
Q Consensus 2 ~~~~~~ 7 (320)
|||||.
T Consensus 16 asnssd 21 (26)
T d2heyr2 16 ASNSSD 21 (26)
T ss_dssp CCSSSC
T ss_pred cCCCcc
Confidence 566664
No 4
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.19 E-value=66 Score=19.27 Aligned_cols=12 Identities=50% Similarity=0.872 Sum_probs=9.4
Q ss_pred CCCCCccccCCC
Q 020906 6 SKSPMLPVSEPA 17 (320)
Q Consensus 6 ~~~~~~~~~~~~ 17 (320)
.|+|++|.|+--
T Consensus 28 tkkpylpiserk 39 (78)
T d1r0va1 28 TKKPYLPISERK 39 (78)
T ss_dssp SSSEEEEEETTS
T ss_pred ecCCcccccccc
Confidence 478999988754
No 5
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.64 E-value=2.9e+02 Score=17.80 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=20.0
Q ss_pred HhhhhhhhcccCcccchHHHHHHHHHHHHH
Q 020906 184 IILGAFVAGARDLSFDFFGYAVVFLANITT 213 (320)
Q Consensus 184 i~~Gv~l~~~~d~~~~~~G~~~~l~s~~~~ 213 (320)
.-.|+.+++-+|..-+ -=.+|.+++.+|.
T Consensus 89 sylgvimasdgdiddn-elalwtlistlcg 117 (132)
T d2h5na1 89 SYLGVIMASDGDIDDN-ELALWTLISTLCG 117 (132)
T ss_dssp HHHHHHSCBTTBCCHH-HHHHHHHHHHHHT
T ss_pred HHhhheeccCCCCCcc-HhHHHHHHHHHhC
Confidence 4568888888887655 3346777777663
No 6
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.11 E-value=2.8e+02 Score=16.83 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=17.9
Q ss_pred CCCCCCCccccCCCCCCchhhhhhcccc
Q 020906 4 NSSKSPMLPVSEPARGDEGEKERLLKGD 31 (320)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (320)
||..+-++.-.+||+-++........+|
T Consensus 2 ~~~~~~l~~h~dDpdid~P~~~~~~~~d 29 (73)
T d1wiva_ 2 SSGSSGLLSHMDDPDIDAPISHQTSDID 29 (73)
T ss_dssp CCCCCCCSSCCSCSCSSCCSCCSSCSSC
T ss_pred chHHHHHHhcCCCCCCCCCccccCCCCC
Confidence 6677778888888876655444444434
No 7
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=2.90 E-value=3.2e+02 Score=18.72 Aligned_cols=25 Identities=24% Similarity=0.026 Sum_probs=18.5
Q ss_pred CCCCCCchhhhhhccccccccccch
Q 020906 15 EPARGDEGEKERLLKGDEKLFRGSA 39 (320)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (320)
+-|++.|.+.+-...+....|.|++
T Consensus 116 plPRg~EI~~~V~d~p~S~v~~Qae 140 (157)
T d1ml4a2 116 PLPRVDEIHPEVDNTKHAIYFRQVF 140 (157)
T ss_dssp CSCCSSSBCGGGGGSTTBCHHHHHH
T ss_pred CCCcCceecccccCCcccHHHHHHH
Confidence 3448888888877777777777766
No 8
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=2.73 E-value=3.1e+02 Score=18.82 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=17.2
Q ss_pred CCCCCchhhhhhccccccccccch
Q 020906 16 PARGDEGEKERLLKGDEKLFRGSA 39 (320)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~ 39 (320)
-|++.|.+.+-...+....|+|++
T Consensus 114 LPR~~EI~~~v~~~~~s~v~~Qa~ 137 (153)
T d1pg5a2 114 LPRVNEIDRKVDKTTKAKYFEQAS 137 (153)
T ss_dssp SCCSSSBCGGGGGSTTBCHHHHHH
T ss_pred CCCcCCcchhhccCcccHHHHHHH
Confidence 347777777777777777777765
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.53 E-value=5.8e+02 Score=14.43 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHHHHHHHHHH-HHHHHHhhhhhcC
Q 020906 121 LMHTLPLAVAY-LLYMVVSVESVRG 144 (320)
Q Consensus 121 ~~~~~~~si~~-~~~~~~~~~sl~~ 144 (320)
.|.+-.+++.+ -.+.+.+.++...
T Consensus 6 mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 6 MKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Confidence 45555555544 3455555555543
No 10
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=2.42 E-value=2.3e+02 Score=15.79 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=9.0
Q ss_pred hhccchhHHHHHhHhhH
Q 020906 292 TTLNSAVTQTICGSFYH 308 (320)
Q Consensus 292 i~~~Salt~sv~g~~K~ 308 (320)
+++.|...+++++-.|+
T Consensus 39 ~e~lss~ahs~i~fi~r 55 (57)
T d1l2wi_ 39 IERLSSVAHSVIGFIQR 55 (57)
T ss_dssp EEECSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555544
Done!