BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020907
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 113/327 (34%), Positives = 169/327 (51%), Gaps = 27/327 (8%)
Query: 1 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETW 60
MA R FPN + + ++A A LT S L N L Q +
Sbjct: 13 MAQRAFPNPYADYNKSLA-EGYFDAAGRLT-------PEFSQRLTNKIRELLQQMER--- 61
Query: 61 GVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIV-EACDSASRDSGRVTFI 119
G+ +D T YTG G A L Y V + L+L V ++ + ++ S +TF+
Sbjct: 62 GLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRS--ITFL 119
Query: 120 CGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-KLPSDLPNELLYGRVGFLWACSFLNK 178
CG AG A+ AVL +E+ + +T+ + K+ PNE+LYGR+G+++A F+NK
Sbjct: 120 CGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNK 179
Query: 179 HMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMYEWHGKKYWGAAHGLAGIMHV 234
+ G + I + ++ + + I+ +G LA + + PLMYEW+ + Y GAAHGLAGI +
Sbjct: 180 NFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYY 239
Query: 235 LMDMELKPDEVED---VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLA 291
LM L+ + + VK ++ Y+ + +FPSGNYP G D LVHWCHGAPGV L
Sbjct: 240 LMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLI 299
Query: 292 KAAEVILDEHCHFHCCLIYQIYCKGVI 318
+A +V +E + C YQ C VI
Sbjct: 300 QAYKVFREEK---YLCDAYQ--CADVI 321
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 216 WHGKKYWGAAHGLAGIMHVLMDMELKPDEVE-DVKGTLRYMIKNRF 260
W G G HG+AG+ V ++L P+EV+ V G + NRF
Sbjct: 184 WTGANIVGFCHGVAGVYEVFEKLDLDPEEVDWQVAGVNHGIWLNRF 229
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana
pdb|1R9J|B Chain B, Transketolase From Leishmania Mexicana
Length = 673
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 139 ERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAV----- 193
+ L D +++ LP+ +P + V F W + + H+G + V
Sbjct: 582 QELFDAQPDTYRQAVLPAGVPVVSVEAYVSFGWE-KYSHAHVGMSGFGASAPAGVLYKKF 640
Query: 194 ---VDEIIKAGRRLANR---GRCPL 212
V+E+++ GR LA R G PL
Sbjct: 641 GITVEEVVRTGRELAKRFPDGTAPL 665
>pdb|3V3T|A Chain A, Crystal Structure Of Clostridium Botulinum Phage C-St Tubz
Length = 360
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 21 ETTTAQDSLTKLLSLPYT--------------AVSDTLKNSALALKQTVVNETWGVSGKR 66
E +D ++KLL++ + A++ +LK S A T E G+S R
Sbjct: 195 EGVVDEDEISKLLTMKKSNVILEFDDKEDIQVALAKSLKESIFAEYTTNTCEFMGISTTR 254
Query: 67 VQDYTLYTGALGTAYLLFKAYQVTKN 92
V D +G FK Y KN
Sbjct: 255 VVDVEAIKSIVGYPRRTFKGYNSKKN 280
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 216 WHGKKYWGAAHGLAGIMHVLMDMELKPDEVE-DVKGTLRYMIKNRF 260
W G G HG+AG+ V + L P+EV+ V G + NRF
Sbjct: 172 WTGANIIGFCHGVAGVYEVFERLGLDPEEVDWQVAGVNHGIWLNRF 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,462,867
Number of Sequences: 62578
Number of extensions: 385940
Number of successful extensions: 774
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 14
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)