Query 020907
Match_columns 320
No_of_seqs 219 out of 690
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 06:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787 Lanthionine synthetase 100.0 3E-73 6.4E-78 500.9 27.1 310 1-317 1-328 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 5.4E-38 1.2E-42 295.1 23.9 245 73-317 1-272 (343)
3 PF05147 LANC_like: Lanthionin 100.0 1.8E-33 3.9E-38 264.6 5.2 249 67-317 2-276 (355)
4 cd04434 LanC_like LanC-like pr 100.0 7.9E-30 1.7E-34 238.1 22.2 238 73-317 1-268 (343)
5 cd04792 LanM-like LanM-like pr 100.0 2.6E-28 5.6E-33 253.5 21.3 245 66-318 483-750 (825)
6 cd04793 LanC LanC is the cycla 100.0 1.1E-27 2.3E-32 228.4 18.4 241 73-317 1-295 (382)
7 cd04791 LanC_SerThrkinase Lant 99.9 7.7E-27 1.7E-31 217.1 19.0 229 73-317 1-243 (321)
8 COG4403 LcnDR2 Lantibiotic mod 99.9 1.2E-23 2.7E-28 207.6 17.8 252 42-318 596-885 (963)
9 cd04434 LanC_like LanC-like pr 99.9 1.2E-21 2.5E-26 182.9 20.0 243 43-308 22-293 (343)
10 cd04792 LanM-like LanM-like pr 99.9 7.3E-21 1.6E-25 197.9 22.0 245 41-308 509-774 (825)
11 cd04794 euk_LANCL eukaryotic L 99.9 1.3E-20 2.9E-25 177.1 20.8 243 41-308 24-297 (343)
12 cd04791 LanC_SerThrkinase Lant 99.9 2.8E-20 6.1E-25 173.0 19.9 212 68-308 38-268 (321)
13 cd04793 LanC LanC is the cycla 99.8 4.6E-18 1E-22 162.1 20.1 252 41-308 20-320 (382)
14 PF05147 LANC_like: Lanthionin 99.8 1.1E-18 2.4E-23 164.1 10.7 248 41-310 27-303 (355)
15 KOG2787 Lanthionine synthetase 99.8 1.6E-17 3.4E-22 148.0 13.9 249 42-314 86-358 (403)
16 COG4403 LcnDR2 Lantibiotic mod 99.6 7.6E-14 1.6E-18 138.9 18.6 236 40-308 664-909 (963)
17 PF07470 Glyco_hydro_88: Glyco 96.9 0.13 2.9E-06 48.1 18.5 221 81-311 32-282 (336)
18 COG4225 Predicted unsaturated 96.8 0.35 7.6E-06 44.9 19.6 217 83-308 45-295 (357)
19 COG1331 Highly conserved prote 96.3 0.61 1.3E-05 47.2 19.3 227 76-310 275-564 (667)
20 COG4225 Predicted unsaturated 96.2 0.61 1.3E-05 43.3 17.3 211 40-262 53-307 (357)
21 cd00249 AGE AGE domain; N-acyl 95.4 2.5 5.5E-05 40.0 21.0 224 77-309 56-330 (384)
22 PF07470 Glyco_hydro_88: Glyco 95.3 2.4 5.3E-05 39.5 19.0 214 39-264 41-294 (336)
23 PF07944 DUF1680: Putative gly 94.7 3.7 8.1E-05 41.0 18.8 218 76-308 66-329 (520)
24 COG1331 Highly conserved prote 94.7 1.3 2.9E-05 44.9 15.1 130 66-200 402-566 (667)
25 PF07944 DUF1680: Putative gly 91.2 1.4 3E-05 44.1 9.6 148 39-187 141-325 (520)
26 cd00249 AGE AGE domain; N-acyl 86.3 16 0.00034 34.5 12.8 140 163-309 52-201 (384)
27 TIGR02474 pec_lyase pectate ly 85.5 3.4 7.3E-05 37.9 7.2 67 229-295 47-119 (290)
28 PLN03012 Camelliol C synthase 82.7 9.6 0.00021 39.7 9.9 103 161-269 616-724 (759)
29 PLN02993 lupeol synthase 82.1 14 0.00029 38.7 10.8 98 162-268 562-661 (763)
30 PLN02993 lupeol synthase 81.7 10 0.00023 39.5 9.8 102 161-268 616-723 (763)
31 PF09492 Pec_lyase: Pectic aci 81.1 1.1 2.3E-05 41.2 2.1 72 229-300 42-119 (289)
32 PLN03012 Camelliol C synthase 78.3 21 0.00046 37.3 10.7 95 166-269 566-662 (759)
33 COG3533 Uncharacterized protei 78.0 14 0.0003 36.4 8.6 97 43-143 151-251 (589)
34 PF00432 Prenyltrans: Prenyltr 77.7 1.1 2.4E-05 28.6 0.8 34 247-280 2-35 (44)
35 PF03663 Glyco_hydro_76: Glyco 77.1 5.6 0.00012 37.9 5.9 135 169-308 93-248 (370)
36 TIGR02474 pec_lyase pectate ly 76.6 62 0.0013 29.8 12.8 168 69-261 38-221 (290)
37 PTZ00470 glycoside hydrolase f 75.4 47 0.001 33.2 12.0 167 134-307 122-313 (522)
38 PF07221 GlcNAc_2-epim: N-acyl 75.1 58 0.0013 30.3 12.2 222 79-308 26-302 (346)
39 PF03663 Glyco_hydro_76: Glyco 74.5 80 0.0017 30.0 13.2 180 72-256 86-317 (370)
40 PF06662 C5-epim_C: D-glucuron 70.0 5.3 0.00011 34.3 3.4 52 259-310 1-59 (189)
41 KOG3760 Heparan sulfate-glucur 67.2 8.3 0.00018 36.7 4.3 63 245-308 379-449 (594)
42 PF13243 Prenyltrans_1: Prenyl 63.5 0.93 2E-05 34.6 -2.3 22 248-269 1-22 (109)
43 TIGR03463 osq_cycl 2,3-oxidosq 54.2 1.1E+02 0.0025 31.4 10.3 100 163-269 373-500 (634)
44 TIGR01507 hopene_cyclase squal 43.2 3.9E+02 0.0085 27.5 15.5 119 140-268 471-599 (635)
45 TIGR03463 osq_cycl 2,3-oxidosq 40.5 1.1E+02 0.0025 31.4 7.8 43 226-269 506-548 (634)
46 PF13243 Prenyltrans_1: Prenyl 40.2 8.6 0.00019 29.1 -0.2 28 241-268 41-68 (109)
47 TIGR01787 squalene_cyclas squa 39.7 1.2E+02 0.0025 31.2 7.7 41 227-267 490-530 (621)
48 PTZ00470 glycoside hydrolase f 38.8 86 0.0019 31.4 6.4 80 29-108 161-256 (522)
49 cd02889 SQCY Squalene cyclase 38.8 3.2E+02 0.0068 25.2 15.8 41 227-269 280-320 (348)
50 PF09492 Pec_lyase: Pectic aci 37.1 3.4E+02 0.0073 25.0 12.3 167 69-260 33-215 (289)
51 cd02889 SQCY Squalene cyclase 35.0 2E+02 0.0044 26.4 8.2 28 232-259 32-59 (348)
52 cd02892 SQCY_1 Squalene cyclas 33.7 1.2E+02 0.0026 31.2 6.8 43 225-267 504-546 (634)
53 PF07221 GlcNAc_2-epim: N-acyl 33.2 1.8E+02 0.0038 27.1 7.4 134 169-311 26-169 (346)
54 PLN02171 endoglucanase 32.6 4.6E+02 0.01 27.0 10.6 66 39-104 198-267 (629)
55 PF01532 Glyco_hydro_47: Glyco 32.5 55 0.0012 32.1 4.0 80 29-108 83-178 (452)
56 PF06917 Pectate_lyase_2: Peri 32.4 1.2E+02 0.0026 30.1 6.0 67 80-146 443-516 (557)
57 TIGR01787 squalene_cyclas squa 32.3 1.6E+02 0.0035 30.2 7.4 38 231-268 444-482 (621)
58 KOG2204 Mannosyl-oligosacchari 32.0 5.5E+02 0.012 26.0 16.7 35 282-316 528-565 (625)
59 PF06662 C5-epim_C: D-glucuron 30.3 63 0.0014 27.7 3.5 40 68-107 22-63 (189)
60 PLN02420 endoglucanase 30.0 5.9E+02 0.013 25.6 11.1 65 39-103 209-277 (525)
61 cd02896 complement_C3_C4_C5 Pr 29.7 4.2E+02 0.0092 24.1 9.2 24 245-268 102-125 (297)
62 COG3533 Uncharacterized protei 28.8 2.4E+02 0.0052 28.2 7.4 66 85-150 142-208 (589)
63 cd02892 SQCY_1 Squalene cyclas 28.7 6.5E+02 0.014 25.8 19.8 58 244-307 474-531 (634)
64 PF03668 ATP_bind_2: P-loop AT 27.8 59 0.0013 29.8 3.0 68 2-78 184-251 (284)
65 KOG2244 Highly conserved prote 27.0 1.3E+02 0.0028 30.2 5.3 80 29-108 583-677 (786)
66 KOG2430 Glycosyl hydrolase, fa 26.4 2.6E+02 0.0056 26.4 6.9 70 234-310 196-277 (587)
67 PF13249 Prenyltrans_2: Prenyl 26.1 34 0.00075 25.7 1.1 22 245-266 91-112 (113)
68 TIGR01507 hopene_cyclase squal 25.2 7.7E+02 0.017 25.4 12.5 71 187-267 470-540 (635)
69 cd02897 A2M_2 Proteins similar 25.0 5.1E+02 0.011 23.3 10.2 39 229-267 84-123 (292)
70 KOG2429 Glycosyl hydrolase, fa 24.7 4.1E+02 0.0089 26.9 8.2 109 41-149 150-287 (622)
71 KOG0497 Oxidosqualene-lanoster 24.1 1E+02 0.0022 31.9 4.1 41 229-269 566-612 (760)
72 PRK05416 glmZ(sRNA)-inactivati 22.3 71 0.0015 29.3 2.5 52 2-59 187-238 (288)
No 1
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=100.00 E-value=3e-73 Score=500.86 Aligned_cols=310 Identities=53% Similarity=0.919 Sum_probs=275.2
Q ss_pred CCCCCCCCCCCCCchhhhcccccchhhhhhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHH
Q 020907 1 MADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTA 80 (320)
Q Consensus 1 m~~r~~~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGia 80 (320)
|+.|+|+|||||...+...+..+ ..++ .+..-+++.+++.+..+++.+++.+|+..+..+.|.++|+|++|||
T Consensus 1 me~r~~~np~pd~a~G~~e~~~~-~~~e------~~~~~~~e~~~r~~~~ikd~~~~~~~~~S~d~~~d~tlYtG~~GiA 73 (403)
T KOG2787|consen 1 MERRAFVNPFPDDASGENETVGS-EPDE------PTGKLFTEFIKRLATKIKDLVVEMTWGKSGDEVRDGTLYTGWLGIA 73 (403)
T ss_pred CcccccCCCCcccccCCCccccC-CCcc------cccccHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCceeechHHHH
Confidence 99999999999986653211110 0010 1222456778888888999999999987666689999999999999
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhccC-CCCCC
Q 020907 81 YLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL-PSDLP 159 (320)
Q Consensus 81 l~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~~~-~~~~~ 159 (320)
++++++|++|.|..++..+.++++++....++.++++|+||.+|++++.+++++.+|+++..+.++.++.++.. +++.|
T Consensus 74 fl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~~~dlp 153 (403)
T KOG2787|consen 74 FLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLCSSDLP 153 (403)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccCCcccc
Confidence 99999999999999999999999999876677789999999999999999999999999999999999988865 77899
Q ss_pred ccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcC--CCCcceeecCcccCccccchHHHHHHHHc
Q 020907 160 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRG--RCPLMYEWHGKKYWGAAHGLAGIMHVLMD 237 (320)
Q Consensus 160 ~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~--~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~ 237 (320)
+|++||||||||+++++++++|+++++++.|++|++.|+.+|+.++++. +|||||+||+++|+|+|||++||+++||+
T Consensus 154 ~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~ 233 (403)
T KOG2787|consen 154 DELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMD 233 (403)
T ss_pred HHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999885 49999999999999999999999999999
Q ss_pred cCCCc---hhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH------
Q 020907 238 MELKP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL------ 308 (320)
Q Consensus 238 ~~~~~---~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~------ 308 (320)
..+.+ ...++|+++++|+++++||+||||++.+++.|++|||||||||+++++.+|++||++++|+++|.+
T Consensus 234 ~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW 313 (403)
T KOG2787|consen 234 PTLKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVW 313 (403)
T ss_pred CCCCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 87643 358999999999999999999999999989999999999999999999999999999999999987
Q ss_pred ------hhhhccccc
Q 020907 309 ------IYQIYCKGV 317 (320)
Q Consensus 309 ------~~~~~c~~~ 317 (320)
..+.-|||+
T Consensus 314 ~rGlLkkg~GichGv 328 (403)
T KOG2787|consen 314 KRGLLKKGVGICHGV 328 (403)
T ss_pred HhhhhhcCCcccccc
Confidence 335667775
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=5.4e-38 Score=295.06 Aligned_cols=245 Identities=44% Similarity=0.799 Sum_probs=201.7
Q ss_pred ccccHHHHHHHHHHhhh----cCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHH
Q 020907 73 YTGALGTAYLLFKAYQV----TKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTK 148 (320)
Q Consensus 73 y~G~aGial~~~~l~~~----~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~ 148 (320)
|+|.+||+|+|+++++. +++++|++.|.+.++.+.........+++++|.+|++.++..+++.++|++..+.+++.
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~ 80 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSK 80 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 79999999999999999 99999999999999887654333567899999999777667778889998877777666
Q ss_pred hhhc-----cCCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcC--CCCcceeecCccc
Q 020907 149 FKEI-----KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRG--RCPLMYEWHGKKY 221 (320)
Q Consensus 149 ~~~~-----~~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~--~~~l~~~w~~~~y 221 (320)
+..+ ...++.++|+++|+||++++|+.+++.++++....+.+.++++.+++.++...... ..|.+|.|++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd04794 81 FLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEY 160 (343)
T ss_pred HHHHHHHHhhcccCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCcee
Confidence 5543 11234567999999999999999999998655566788999999998876544321 2456788888899
Q ss_pred CccccchHHHHHHHHccCC---CchhHHHHHHHHHHHHHccCCCCCCCCCCCCC-CCcccccccCchHHHHHHHHHHhhc
Q 020907 222 WGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSE-SDRLVHWCHGAPGVTLTLAKAAEVI 297 (320)
Q Consensus 222 lG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~-~~~~~~WCHGa~Gi~~~l~~a~~~~ 297 (320)
+|+|||.+||+++|+.... ++++.+.++++++++.+.+.++||||+..... .+..++||||+|||+.+++.+++++
T Consensus 161 ~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~ 240 (343)
T cd04794 161 LGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVF 240 (343)
T ss_pred cchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHh
Confidence 9999999999999988753 45788999999999998777889999887532 3457899999999999999999999
Q ss_pred CCHHHHHHHHH------------hhhhccccc
Q 020907 298 LDEHCHFHCCL------------IYQIYCKGV 317 (320)
Q Consensus 298 ~d~~yl~~a~~------------~~~~~c~~~ 317 (320)
+|+++.+.+++ ..+++|||.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~ 272 (343)
T cd04794 241 KEEQYLEAAIKCGELIWKRGLLKKGPGLCHGI 272 (343)
T ss_pred CCHHHHHHHHHHHHHHHHhCCccCCCccccCc
Confidence 99999999886 136899996
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.98 E-value=1.8e-33 Score=264.61 Aligned_cols=249 Identities=23% Similarity=0.405 Sum_probs=183.9
Q ss_pred CCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCC--CcccccCchhHHHHHHHHHHHhCCHHHHHH
Q 020907 67 VQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSG--RVTFICGRAGVCALGAVLAKHAGDERLLDH 144 (320)
Q Consensus 67 ~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~--~~~~~~G~aGi~al~~~i~~~~g~~~~~~~ 144 (320)
|.+.+||+|.+||+++|.++++.++++.|.+.+.++++.+........ .+|+++|.+|++.+...+++..++++..+.
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~ 81 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEE 81 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHHHH
Confidence 568899999999999999999999999999999999999775432222 899999999976666666777776666655
Q ss_pred HHHHhhhcc---CCCCCC--ccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceee-cC
Q 020907 145 YLTKFKEIK---LPSDLP--NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEW-HG 218 (320)
Q Consensus 145 ~l~~~~~~~---~~~~~~--~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w-~~ 218 (320)
.++.+.+.. ...+.+ +|+++|.||++.+++.+++.++++.++ +.+.++++.|++...... ....+.++.| .+
T Consensus 82 ~l~~~~~~i~~~~~~~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 159 (355)
T PF05147_consen 82 LLKRILNIIENSISNDSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDD-PSENQIGSEWKEG 159 (355)
T ss_dssp HHHHHHHCHHHHHHCT--GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCH-TCCGSSSHHCHTT
T ss_pred HHHHHHHHHHHhhhhcccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhcc-cccCCCccccCCC
Confidence 666654431 112222 899999999999999999888776665 477888888877654322 1224556777 57
Q ss_pred cccCccccchHHHHHHHHccCC----CchhHHHHHHHHHHHHHccC-CCCCCCCCCCCCCCc-ccccccCchHHHHHHHH
Q 020907 219 KKYWGAAHGLAGIMHVLMDMEL----KPDEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDR-LVHWCHGAPGVTLTLAK 292 (320)
Q Consensus 219 ~~ylG~aHG~aGIl~~Ll~~~~----~~~~~~~i~~~l~~l~~~~~-~~gnwp~~~~~~~~~-~~~WCHGa~Gi~~~l~~ 292 (320)
..++|+|||.+||+++|+.++. ++++.+.+++.++++.+.+. .+++||......... ..+||||+||+++++.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~ 239 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPGILLALLK 239 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHHHHHHHHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHHHHHHHHH
Confidence 7889999999999999998862 34678899999999998765 467799887532111 68999999999999999
Q ss_pred HHhhcCCHHHHHHHHH------------hhhhccccc
Q 020907 293 AAEVILDEHCHFHCCL------------IYQIYCKGV 317 (320)
Q Consensus 293 a~~~~~d~~yl~~a~~------------~~~~~c~~~ 317 (320)
+++.++++.+.+.+.+ ..+++|||.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~ 276 (355)
T PF05147_consen 240 AYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGT 276 (355)
T ss_dssp HHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCch
Confidence 9999999999888775 567899985
No 4
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.97 E-value=7.9e-30 Score=238.10 Aligned_cols=238 Identities=29% Similarity=0.431 Sum_probs=182.2
Q ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCC--CCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 020907 73 YTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS--GRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFK 150 (320)
Q Consensus 73 y~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~--~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~ 150 (320)
|+|.+||++++.++++.++++++.+.+.+.++.+....... ...++++|.+|++.++..+++..++++..+.+.+.+.
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~ 80 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLL 80 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 79999999999999999999999998888888766432222 4789999999976666677888899887777666555
Q ss_pred hccC-----CCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceee-----cCcc
Q 020907 151 EIKL-----PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEW-----HGKK 220 (320)
Q Consensus 151 ~~~~-----~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w-----~~~~ 220 (320)
.+.. ......|+++|.||++++++.+++.++++.+. +.+.++++.+++....... .+.| .+..
T Consensus 81 ~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~ 153 (343)
T cd04434 81 LLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFL-ELIRKILDYLLELGKNGDG------KIRWPMYFPEGRV 153 (343)
T ss_pred HhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHH-HHHHHHHHHHHHhhhhccC------CCceeeeccCCcc
Confidence 4421 13567899999999999999999988766554 4788888888886543211 2223 2446
Q ss_pred cCccccchHHHHHHHHccCC---CchhHHHHHHHHHHHHHccCC-CCCCCCCCC-CCCCcccccccCchHHHHHHHHHHh
Q 020907 221 YWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFP-SGNYPSSEG-SESDRLVHWCHGAPGVTLTLAKAAE 295 (320)
Q Consensus 221 ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~~l~~~~~~-~gnwp~~~~-~~~~~~~~WCHGa~Gi~~~l~~a~~ 295 (320)
+.|+|||.+||+++|+.+.. ++...+.++.++.++.+.+.. .++|++... ......++||||++|++++++++++
T Consensus 154 ~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~ 233 (343)
T cd04434 154 NLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYK 233 (343)
T ss_pred ccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHH
Confidence 89999999999999998753 345567788888888766554 455664222 2334578999999999999999999
Q ss_pred hcCCHHHHHHHHH-------------hhhhccccc
Q 020907 296 VILDEHCHFHCCL-------------IYQIYCKGV 317 (320)
Q Consensus 296 ~~~d~~yl~~a~~-------------~~~~~c~~~ 317 (320)
.++|+++.+.+++ ..+++|||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~ 268 (343)
T cd04434 234 ALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGI 268 (343)
T ss_pred HcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCc
Confidence 9999999988865 356899996
No 5
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.96 E-value=2.6e-28 Score=253.54 Aligned_cols=245 Identities=19% Similarity=0.244 Sum_probs=183.0
Q ss_pred cCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCC----CCCcccccCchhHHHHHHHHHHHhCCHHH
Q 020907 66 RVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRD----SGRVTFICGRAGVCALGAVLAKHAGDERL 141 (320)
Q Consensus 66 ~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~----~~~~~~~~G~aGi~al~~~i~~~~g~~~~ 141 (320)
.+.+.+||+|.+||+++|.++++.+++++|.+.|.++++.+...... ..+.|+++|.+|++.++..+++.++++++
T Consensus 483 ~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~ 562 (825)
T cd04792 483 SPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRL 562 (825)
T ss_pred ecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHHHHHHHHHHHHcCCHHH
Confidence 47899999999999999999999999999999998888876543221 24689999999965555666888898876
Q ss_pred HHHHHHHhhhcc--CCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCc
Q 020907 142 LDHYLTKFKEIK--LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGK 219 (320)
Q Consensus 142 ~~~~l~~~~~~~--~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~ 219 (320)
.+.+.+.+..+. .......|+++|.||++++++.+++.++++.+.+ .+.++++.+++..... ...+|.+.+.
T Consensus 563 ~~~a~~~~~~l~~~~~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~-~a~~~~~~l~~~~~~~-----~~~~~~~~~~ 636 (825)
T cd04792 563 LNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYELFLSERFLD-LALKCGDHLLENASNE-----DGGIGPAEQP 636 (825)
T ss_pred HHHHHHHHHHHHHhhccccCCCEeeecHHHHHHHHHHHhccCChHHHH-HHHHHHHHHHHhhhhc-----cCCccccccc
Confidence 655444333321 1234567999999999999999999988766554 6777888877653321 1112222234
Q ss_pred ccCccccchHHHHHHHHccCC---CchhHHHHHHHHHHHHHccC-CCCCCCCCCCCCCCcccccccCchHHHHHHHHHHh
Q 020907 220 KYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAE 295 (320)
Q Consensus 220 ~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~~l~~~~~-~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~ 295 (320)
.+.|+|||.+||+++|+.++. ++++.+.++++++++.+... ..++||... ......+||||+||++++++.+++
T Consensus 637 ~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~--~~~~~~~WChG~~GI~lal~~~~~ 714 (825)
T cd04792 637 NLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKD--GNSFSAAWCHGAPGILLARLELLK 714 (825)
T ss_pred ccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcC--cCCCCCcccCCcHHHHHHHHHHHh
Confidence 578999999999999998753 45678899999998876433 356899332 233468999999999999999999
Q ss_pred h--cCCHHHHHHHHH-----------hhhhcccccc
Q 020907 296 V--ILDEHCHFHCCL-----------IYQIYCKGVI 318 (320)
Q Consensus 296 ~--~~d~~yl~~a~~-----------~~~~~c~~~~ 318 (320)
+ .+|+.+.+.+.+ ..+++|||..
T Consensus 715 ~~~~~d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~ 750 (825)
T cd04792 715 FNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDL 750 (825)
T ss_pred cCccchHHHHHHHHHHHHHHHHhcCCCCCeecCCCc
Confidence 9 788887776665 2457999963
No 6
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.95 E-value=1.1e-27 Score=228.35 Aligned_cols=241 Identities=18% Similarity=0.225 Sum_probs=160.6
Q ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCC-CCcccccCchhH-HHHHHHHHH-HhCCHHHHH---HHH
Q 020907 73 YTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS-GRVTFICGRAGV-CALGAVLAK-HAGDERLLD---HYL 146 (320)
Q Consensus 73 y~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~-~~~~~~~G~aGi-~al~~~i~~-~~g~~~~~~---~~l 146 (320)
|+|.+||+++|.++++++++++|.+.|.++++++....... ...|++.|.+|+ +++. .+.+ ...+++.++ +++
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~-~~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALL-ILSDNGKRYQELLESLDELI 79 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHH-HHccCcHhHHHHHHHHHHHH
Confidence 78999999999999999999999999999998876543222 478999999995 5554 3344 233344332 222
Q ss_pred HHhhh--c------cCCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhc----CCCCcce
Q 020907 147 TKFKE--I------KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANR----GRCPLMY 214 (320)
Q Consensus 147 ~~~~~--~------~~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~----~~~~l~~ 214 (320)
..+.+ + ....+..+|+++|.||++.+|+.++. .... ....+.++++.+++........ ...+...
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (382)
T cd04793 80 KAIVRRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHE--PDSE-LLREILDYLVYLTEPLNQDITLYIWSENQPSET 156 (382)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCceeechHHHHHHHHhccC--cchh-HHHHHHHHHHHHHHHHhcCCCCccCcCcCCCcc
Confidence 22211 1 01335668999999999999998761 1111 1124555555555432110000 0000001
Q ss_pred eec----CcccCccccchHHHHHHHHccC----CCchhHHHHHHHHHHHHHccCC--CCCCCCCCC-----------CCC
Q 020907 215 EWH----GKKYWGAAHGLAGIMHVLMDME----LKPDEVEDVKGTLRYMIKNRFP--SGNYPSSEG-----------SES 273 (320)
Q Consensus 215 ~w~----~~~ylG~aHG~aGIl~~Ll~~~----~~~~~~~~i~~~l~~l~~~~~~--~gnwp~~~~-----------~~~ 273 (320)
.+. +..++|+|||++||+.+|+.+. ..+++.+.++++++|+.+.++. .+||+.... ...
T Consensus 157 ~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 236 (382)
T cd04793 157 ESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPN 236 (382)
T ss_pred ccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCC
Confidence 111 2347899999999999998764 3557789999999999876553 457654320 112
Q ss_pred CcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH---------------hhhhccccc
Q 020907 274 DRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL---------------IYQIYCKGV 317 (320)
Q Consensus 274 ~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~---------------~~~~~c~~~ 317 (320)
....+||||+|||+++++.++++++|+++.+.|.+ ..+++|||.
T Consensus 237 ~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~ 295 (382)
T cd04793 237 PFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQLSKLISPTLCHGL 295 (382)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhhhccCCCCCcCccH
Confidence 23689999999999999999999999999887764 256899995
No 7
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.95 E-value=7.7e-27 Score=217.09 Aligned_cols=229 Identities=17% Similarity=0.194 Sum_probs=166.2
Q ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhc
Q 020907 73 YTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI 152 (320)
Q Consensus 73 y~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~ 152 (320)
|+|.+||++++.+++. ..+.+.+.++|+..........++|+++|.+|+..++.. ++..+..++.++.+.+.
T Consensus 1 ~~G~aGi~~~l~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~gl~~G~~Gi~~~l~~----~~~~~~~~~~~~~~~~~ 72 (321)
T cd04791 1 AHGAAGVLMALLRSGF----GDYAENALDWIEEAATRELSGSPPGLYDGRAGIAWVLIE----LGHPARAKALFDTLLDE 72 (321)
T ss_pred CchHHHHHHHHHHhcC----CCCCchHHHHHHHHhhccCCCCCCccccChhhHHHHHHH----cCCHHHHHHHHHHHhcc
Confidence 7899999999999871 123344677777665433333578999999996443222 45555555555555332
Q ss_pred cCCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHH
Q 020907 153 KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIM 232 (320)
Q Consensus 153 ~~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl 232 (320)
..++.+.|+++|.+|++++++.+++. +++.+.+ .++++++.+++...+ ......|...+..+.|++||.|||+
T Consensus 73 -~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~-~a~~~~~~l~~~~~~----~~~~~~~~~~~~~~~G~~hG~aGi~ 145 (321)
T cd04791 73 -PSANLNIDLASGLAGIGLALLYFART-GDPALLE-AAAKIAELLAEALER----GDPALLWPDFDRVDHGLLHGWAGIA 145 (321)
T ss_pred -cccccCCccccchHHHHHHHHHHHhc-CChHHHH-HHHHHHHHHHHHhhc----cccccccccCCCCCCccccCcHHHH
Confidence 12346789999999999999999999 8777664 778888888775432 1111123223456899999999999
Q ss_pred HHHHccCC---CchhHHHHHHHHHHHHHccC-CCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 233 HVLMDMEL---KPDEVEDVKGTLRYMIKNRF-PSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 233 ~~Ll~~~~---~~~~~~~i~~~l~~l~~~~~-~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
++|+.++. ++++.+.++++++++++... ..++|+.... ....+.+||||++|+++++++++++++|++|++.+++
T Consensus 146 ~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~ 224 (321)
T cd04791 146 LFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDE-GARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADG 224 (321)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCC-CCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99998763 56789999999999987544 3455654332 2335689999999999999999999999999998886
Q ss_pred ----------hhhhccccc
Q 020907 309 ----------IYQIYCKGV 317 (320)
Q Consensus 309 ----------~~~~~c~~~ 317 (320)
..|.+|||.
T Consensus 225 ~~~~~~~~~~~~~~lchG~ 243 (321)
T cd04791 225 IAHAALSSCYANPGLFSGT 243 (321)
T ss_pred HHHHHhhhhccCccccCCc
Confidence 567899995
No 8
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.91 E-value=1.2e-23 Score=207.64 Aligned_cols=252 Identities=15% Similarity=0.206 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC-------------------CcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHH
Q 020907 42 DTLKNSALALKQTVVNETWGVSG-------------------KRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDI 102 (320)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~~-------------------~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~ 102 (320)
+-+++.|.++.+.+.+....... .+|...++|.|.+||++||.+|+.+|+...|.+.|.+.
T Consensus 596 e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~ 675 (963)
T COG4403 596 EYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKA 675 (963)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHH
Confidence 35788888877776554322111 25789999999999999999999999999999999988
Q ss_pred HHHHHhhc---CCCCCcccccCchh-HHHHHHHHHHHhCCHHHHHHHHHHhhhc--cCCCCCCccccccchHHHHHHHHH
Q 020907 103 VEACDSAS---RDSGRVTFICGRAG-VCALGAVLAKHAGDERLLDHYLTKFKEI--KLPSDLPNELLYGRVGFLWACSFL 176 (320)
Q Consensus 103 l~~~~~~~---~~~~~~~~~~G~aG-i~al~~~i~~~~g~~~~~~~~l~~~~~~--~~~~~~~~dll~G~AG~l~~ll~l 176 (320)
++...... ....++|.+.|.+| +|++ ..|+..++|....+.+.+.+..+ ....+...|++.|.||++..|+.+
T Consensus 676 L~~~~~sv~~~~~~~~iga~~G~~g~~yal-~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~g~i~~L~~i 754 (963)
T COG4403 676 LQDSRKSVNNNLNPINIGAFTGLSGYFYAL-WKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLAGVICVLVSI 754 (963)
T ss_pred HHHHHHhhhhccCCcccccccccchhhhhh-HHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccHHHHHHHHHH
Confidence 88755321 11146899999999 6776 45688888877666655555433 122344579999999999999999
Q ss_pred HhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHHHHHHccCC---CchhHHHHHHHHH
Q 020907 177 NKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLR 253 (320)
Q Consensus 177 ~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~ 253 (320)
++.+.++++++ .+..+.+.+.+..... + +|. +..+|++||++||+++|++++. .+.+++.+++.+.
T Consensus 755 Yk~~~epk~l~-~ais~~~~l~~~~v~~--------d-~s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~ 823 (963)
T COG4403 755 YKLTDEPKFLE-LAISLGRILMEKIVGN--------D-SSE-TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLS 823 (963)
T ss_pred HhhccchHHHH-HHHHHHHHHHHHhhcc--------c-ccc-ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99987766554 5555666655432210 0 133 5679999999999999999864 4567889999999
Q ss_pred HHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH----------hhhhcccccc
Q 020907 254 YMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL----------IYQIYCKGVI 318 (320)
Q Consensus 254 ~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~----------~~~~~c~~~~ 318 (320)
++.. .|.+ ..+.||||+||++.+++...+.++|++..+..+. ....+|||..
T Consensus 824 ~Er~-~f~~------------~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glgn~~~Chgdf 885 (963)
T COG4403 824 YERM-KFSD------------KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGLGNDSLCHGDF 885 (963)
T ss_pred HHHH-HHHH------------HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCCCccccccch
Confidence 8865 3422 2478999999999999999999999888777664 3557899863
No 9
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.89 E-value=1.2e-21 Score=182.91 Aligned_cols=243 Identities=20% Similarity=0.178 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcC---CCCCcccc
Q 020907 43 TLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASR---DSGRVTFI 119 (320)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~---~~~~~~~~ 119 (320)
++.+.+...++.+.+.. ... ...+.++|+|.+|+++++.++++.++++++++.+.+.++....... .....+++
T Consensus 22 ~~~~~~~~~~~~i~~~~-~~~--~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 98 (343)
T cd04434 22 KYQDLAHKALEYIVKSL-SSL--PDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLL 98 (343)
T ss_pred cHHHHHHHHHHHHHHHH-HhC--CCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCccee
Confidence 44455555555543332 111 0157799999999999999999999999999999888887664321 34578999
Q ss_pred cCchhHHHHHHHHHHHhCCHHHHHHH---HHHhhhccC-------------CCCCCccccccchHHHHHHHHHHhHhCCC
Q 020907 120 CGRAGVCALGAVLAKHAGDERLLDHY---LTKFKEIKL-------------PSDLPNELLYGRVGFLWACSFLNKHMGKD 183 (320)
Q Consensus 120 ~G~aGi~al~~~i~~~~g~~~~~~~~---l~~~~~~~~-------------~~~~~~dll~G~AG~l~~ll~l~~~~~~~ 183 (320)
.|.+|+..++..+++.++++...+.+ .+.+.+... ......++.+|.+|++++++.+++.+.++
T Consensus 99 ~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~ 178 (343)
T cd04434 99 SGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDK 178 (343)
T ss_pred echHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeeccCCccccchhhhhHHHHHHHHHHHHhcCCh
Confidence 99999655555567777665544433 333322110 01234578999999999999999988443
Q ss_pred cccHHHHHHHHHHHHHHhHHhhhcCCCCcceeec-------CcccCccccchHHHHHHHHccCC---CchhHHHHHHHHH
Q 020907 184 TISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWH-------GKKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLR 253 (320)
Q Consensus 184 ~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~-------~~~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~ 253 (320)
. ..+.++++.... ++..... .+.|. .....+||||.+||+.+|+.+.. +++..+.+++.++
T Consensus 179 ~-~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (343)
T cd04434 179 S-LEALIKALLKYE----RRLQDDS----GGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALE 249 (343)
T ss_pred h-HHHHHHHHHHHH----HHccCCC----CCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3 222333333322 2111100 11221 23468999999999999998753 3456777777777
Q ss_pred HHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 254 YMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 254 ~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
...+....+ ....+||||.+|++++++.+++.++++++++.|..
T Consensus 250 ~~~~~~~~~-----------~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~ 293 (343)
T cd04434 250 LAWKRGLLE-----------LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALA 293 (343)
T ss_pred HHHHhhhcc-----------CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHH
Confidence 766432111 23488999999999999999999999999999986
No 10
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.87 E-value=7.3e-21 Score=197.94 Aligned_cols=245 Identities=20% Similarity=0.198 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCccccc
Q 020907 41 SDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFIC 120 (320)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~ 120 (320)
++++.+.+.++++.+.... ........+.|+|+|.+|+++++.++++.++++.|++.+.+.++.+..........+++.
T Consensus 509 ~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~ 587 (825)
T cd04792 509 DERYTRLARKILDSLVKSL-SELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFIS 587 (825)
T ss_pred ChHHHHHHHHHHHHHHHHH-hcccccccCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEee
Confidence 4456666666666654332 211111357899999999999999999999999999999888887654333345689999
Q ss_pred CchhHHHHHHHHHHHhCCHHHHHHHHHHhhhc---cCC---------CCCCccccccchHHHHHHHHHHhHhCCCcccHH
Q 020907 121 GRAGVCALGAVLAKHAGDERLLDHYLTKFKEI---KLP---------SDLPNELLYGRVGFLWACSFLNKHMGKDTISTA 188 (320)
Q Consensus 121 G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~---~~~---------~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~ 188 (320)
|.+|+..++..+++.++++...+.+.+.+..+ ... .....++.+|.+|++++++.+++.++++.+.+
T Consensus 588 G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~- 666 (825)
T cd04792 588 GAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLK- 666 (825)
T ss_pred ecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhccCCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHH-
Confidence 99996544456688888877666554444332 111 11345899999999999999999988765443
Q ss_pred HHHHHHHHHHHHhHHhhhcCCCCcceeecC----cccCccccchHHHHHHHHccCC-----CchhHHHHHHHHHHHHHcc
Q 020907 189 QMRAVVDEIIKAGRRLANRGRCPLMYEWHG----KKYWGAAHGLAGIMHVLMDMEL-----KPDEVEDVKGTLRYMIKNR 259 (320)
Q Consensus 189 ~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~----~~ylG~aHG~aGIl~~Ll~~~~-----~~~~~~~i~~~l~~l~~~~ 259 (320)
.+.++++..... . .+-.+.|.. ....+||||.+||+++++.+.. ++...+.+..+++...+.
T Consensus 667 ~a~~~l~~~~~~----~----~~~~~~w~~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~- 737 (825)
T cd04792 667 LAHKALKYERRL----F----SEEGWNWPRKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE- 737 (825)
T ss_pred HHHHHHHHHHHh----c----CHhhcCCCCcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-
Confidence 333333322111 1 011234432 2368999999999999987643 224466777777776542
Q ss_pred CCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 260 FPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 260 ~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
+.+ ...+||||.+|++.+++.+++.++|+++.+.|.+
T Consensus 738 ---~~~---------~~~slCHG~~Gil~~ll~~~~~~~~~~~~~~a~~ 774 (825)
T cd04792 738 ---GFG---------NNHSLCHGDLGNLEILLYAAKAFGDEKLQELANS 774 (825)
T ss_pred ---cCC---------CCCeecCCCcchHHHHHHHHHhcCCHHHHHHHHH
Confidence 211 1377999999999999999999999999998886
No 11
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.87 E-value=1.3e-20 Score=177.13 Aligned_cols=243 Identities=15% Similarity=0.131 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhc---CCCCCcc
Q 020907 41 SDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSAS---RDSGRVT 117 (320)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~---~~~~~~~ 117 (320)
++++++.|.+.++.+.+.. + ...+.++++|.+|+++++.++++.++++++++.+.+.++...... .......
T Consensus 24 ~~~y~~~a~~~i~~~~~~~-~----~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d 98 (343)
T cd04794 24 DQTYLSWALEYIKASLRAI-P----DDRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDE 98 (343)
T ss_pred chHHHHHHHHHHHHHHhhc-c----cccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCchh
Confidence 5567888887777664432 2 135679999999999999999999999999888888887665321 1233568
Q ss_pred cccCchhHHHHHHHHHHHhCCH----HHHHHHHHHhhhc-----cCC-----------CCCCccccccchHHHHHHHHHH
Q 020907 118 FICGRAGVCALGAVLAKHAGDE----RLLDHYLTKFKEI-----KLP-----------SDLPNELLYGRVGFLWACSFLN 177 (320)
Q Consensus 118 ~~~G~aGi~al~~~i~~~~g~~----~~~~~~l~~~~~~-----~~~-----------~~~~~dll~G~AG~l~~ll~l~ 177 (320)
++.|.+|+...+..+++.++++ +.++++.+.+.+. ... ......+.+|.+|++++|+.++
T Consensus 99 ~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~ 178 (343)
T cd04794 99 LLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTP 178 (343)
T ss_pred hhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhh
Confidence 9999999544445557777632 3334443332111 000 0011356789999999999999
Q ss_pred hHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCccee-ec----CcccCccccchHHHHHHHHccCC---CchhHHHHH
Q 020907 178 KHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WH----GKKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVK 249 (320)
Q Consensus 178 ~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~-w~----~~~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~ 249 (320)
+.++++.+.+ .+++.++.+.+.... .+ .|. |. +..+.+||||.+||+.+|+.+.. ++++.+.+.
T Consensus 179 ~~~~~~~~~~-~i~~~i~~~~~~~~~---~g----~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~ 250 (343)
T cd04794 179 LFLLKPSLAP-LIKRSLDYLLSLQFP---SG----NFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAI 250 (343)
T ss_pred hhcCCccHHH-HHHHHHHHHHHhhcc---CC----CCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 8877665543 666666666654211 01 121 11 22467999999999999988753 445677777
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 250 GTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 250 ~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
.+.+.+.+..+. ....++|||.+|++++++++++++++++|++.|..
T Consensus 251 ~~~~~~~~~g~~------------~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~ 297 (343)
T cd04794 251 KCGELIWKRGLL------------KKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACK 297 (343)
T ss_pred HHHHHHHHhCCc------------cCCCccccCccchHHHHHHHHHHhCcHHHHHHHHH
Confidence 777765432111 12368999999999999999999999999999987
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.86 E-value=2.8e-20 Score=172.99 Aligned_cols=212 Identities=15% Similarity=0.105 Sum_probs=149.3
Q ss_pred CCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHH
Q 020907 68 QDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLT 147 (320)
Q Consensus 68 ~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~ 147 (320)
.+.|+|+|.+||++++.++.+. +.+.++++..........+.+++.|.+|+..++..+++. ++++..+.+.+
T Consensus 38 ~~~gl~~G~~Gi~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~~a~~ 109 (321)
T cd04791 38 SPPGLYDGRAGIAWVLIELGHP-------ARAKALFDTLLDEPSANLNIDLASGLAGIGLALLYFART-GDPALLEAAAK 109 (321)
T ss_pred CCCccccChhhHHHHHHHcCCH-------HHHHHHHHHHhcccccccCCccccchHHHHHHHHHHHhc-CChHHHHHHHH
Confidence 5789999999999999886543 334555554433222335689999999965555566777 88877665444
Q ss_pred Hhhhc---cC----------CCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcce
Q 020907 148 KFKEI---KL----------PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMY 214 (320)
Q Consensus 148 ~~~~~---~~----------~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~ 214 (320)
..+.+ .. ......++++|.||++++|+.+++.++++.+.+ .+++.++.+++.-.. ... .|
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~-~A~~~~~~~~~~~~~----~~~--g~ 182 (321)
T cd04791 110 IAELLAEALERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLE-LAEEALDKELARAVV----DDG--GL 182 (321)
T ss_pred HHHHHHHHhhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHhhcc----CCC--Cc
Confidence 33322 00 011235789999999999999999999887655 566666665553221 111 12
Q ss_pred eec---CcccCccccchHHHHHHHHccCC---CchhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHH
Q 020907 215 EWH---GKKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTL 288 (320)
Q Consensus 215 ~w~---~~~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~ 288 (320)
.|. +....++|||.+||+++|+++.. ++++.+.++++++.+.+.. | ...+||||.+|++.
T Consensus 183 ~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~-----~---------~~~~lchG~~G~~~ 248 (321)
T cd04791 183 LQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC-----Y---------ANPGLFSGTAGLGA 248 (321)
T ss_pred eEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-----c---------cCccccCCcHhHHH
Confidence 232 22467999999999999988753 4567778888888776421 1 23679999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 020907 289 TLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 289 ~l~~a~~~~~d~~yl~~a~~ 308 (320)
++..+++.++|++|++.|.+
T Consensus 249 ~l~~~~~~~~~~~~~~~~~~ 268 (321)
T cd04791 249 HLNDLAAEGDNALYKAAAER 268 (321)
T ss_pred HHHhhcccccChHHHHHHHH
Confidence 99999999999999999987
No 13
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.80 E-value=4.6e-18 Score=162.14 Aligned_cols=252 Identities=13% Similarity=0.065 Sum_probs=151.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhh-hcCChHHHHHHHHHHHHHHhhc---------
Q 020907 41 SDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQ-VTKNDNELKLCCDIVEACDSAS--------- 110 (320)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~-~~~~~~~l~~a~~~l~~~~~~~--------- 110 (320)
++++.+.|.++++.+.+.. ... ..+.|+|+|.+|+++++.++.+ ..+++++++.+.+++..+.+..
T Consensus 20 ~~~~~~~a~~~l~~~~~~l-~~~---~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (382)
T cd04793 20 DEGYWERVHQYLSKALNYL-LSL---GYSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIKAIVRRRLEDAKSGEP 95 (382)
T ss_pred ccchHHHHHHHHHHHHHHH-HhC---CCCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456666666666654432 221 1477999999999999999887 4455666667777665543210
Q ss_pred CCCCCcccccCchhHHHHHHHHHHHhCCHH---HHHHHHHHhhhc--c-----------CC----C-----CCCcccccc
Q 020907 111 RDSGRVTFICGRAGVCALGAVLAKHAGDER---LLDHYLTKFKEI--K-----------LP----S-----DLPNELLYG 165 (320)
Q Consensus 111 ~~~~~~~~~~G~aGi~al~~~i~~~~g~~~---~~~~~l~~~~~~--~-----------~~----~-----~~~~dll~G 165 (320)
......+++.|.+|+..++..++ ..+++ .+..+++.+.+. . .. . .....+-+|
T Consensus 96 ~~~~~yD~i~G~aGi~~~Ll~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG 173 (382)
T cd04793 96 PTPTNYDVISGLSGIGRYLLLRH--EPDSELLREILDYLVYLTEPLNQDITLYIWSENQPSETESKEFPEGHINLGLAHG 173 (382)
T ss_pred CCCCCCceeechHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCCCccccccCCCccccccchhc
Confidence 22345789999999765433333 11222 233333333211 0 00 0 012246689
Q ss_pred chHHHHHHHHHHhHh-CCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcce----ee------cCcccCccccchHHHHHH
Q 020907 166 RVGFLWACSFLNKHM-GKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMY----EW------HGKKYWGAAHGLAGIMHV 234 (320)
Q Consensus 166 ~AG~l~~ll~l~~~~-~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~----~w------~~~~ylG~aHG~aGIl~~ 234 (320)
.+|++++|..+++.. ..+...+ .+++.++.+.+.........--|..+ .+ ......+||||.+||+.+
T Consensus 174 ~aGi~~~L~~~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~ 252 (382)
T cd04793 174 IAGPLALLALAKERGIRVDGQLE-AIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARA 252 (382)
T ss_pred chHHHHHHHHHHHcCCCcCChHH-HHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHH
Confidence 999999999888776 4444333 55555555544322110000000000 00 011358999999999999
Q ss_pred HHccCC---CchhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 235 LMDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 235 Ll~~~~---~~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
|+.+.. ++++.+.+.++++...... .++|. .....||||.+|++..++++++.++|+++++.|++
T Consensus 253 l~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~-------~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~ 320 (382)
T cd04793 253 LQLAGKALDDQKLQEAAEKILKAALKDK--KQLSK-------LISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEY 320 (382)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHhCh--hhhcc-------CCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 987642 4455666666666655321 22221 12468999999999999999999999999998886
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.77 E-value=1.1e-18 Score=164.08 Aligned_cols=248 Identities=15% Similarity=0.150 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHH-HHHHHHHHHHhhcCCCCC--cc
Q 020907 41 SDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELK-LCCDIVEACDSASRDSGR--VT 117 (320)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~-~a~~~l~~~~~~~~~~~~--~~ 117 (320)
++++.+.+.++++.+.... ... ...+.|+|+|.+|+++++..+++..++....+ ....+.+...+....... .+
T Consensus 27 ~~~~~~~~~~~l~~~~~~~-~~~--~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~D 103 (355)
T PF05147_consen 27 DPKYLDLAEKLLEKLINYI-ENN--PYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSISNDSNNDYD 103 (355)
T ss_dssp HHHHHHHHHHHHHHHCCCH-HCC----S--STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHHCT--GGCS
T ss_pred CcHHHHHHHHHHHHHHHHH-Hhc--cCcCCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhcccccch
Confidence 5678888888888875543 211 12288999999999999999998877766552 233322222222112222 89
Q ss_pred cccCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhcc---CC--------------CCCCccccccchHHHHHHHHHH-hH
Q 020907 118 FICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK---LP--------------SDLPNELLYGRVGFLWACSFLN-KH 179 (320)
Q Consensus 118 ~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~~---~~--------------~~~~~dll~G~AG~l~~ll~l~-~~ 179 (320)
++.|.+|+..+...+++.+++++..+.+.+.+..+. .. ......+.+|.+|++++|..++ +.
T Consensus 104 ~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~ 183 (355)
T PF05147_consen 104 LLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKG 183 (355)
T ss_dssp TTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT
T ss_pred hhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcccccCCCccccCCCCccCCccccHHHHHHHHHHhhhcc
Confidence 999999965554555777777766655554444431 11 0112356789999999999988 46
Q ss_pred hCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeec-Ccc----cCccccchHHHHHHHHccC---CCchhHHHHHHH
Q 020907 180 MGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWH-GKK----YWGAAHGLAGIMHVLMDME---LKPDEVEDVKGT 251 (320)
Q Consensus 180 ~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~-~~~----ylG~aHG~aGIl~~Ll~~~---~~~~~~~~i~~~ 251 (320)
++++.+. +.++++++.+.+..... .. .|... +.. ..+||||.+||+.++..+. .++.+.+.+.++
T Consensus 184 ~~~~~~~-~~i~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~ 256 (355)
T PF05147_consen 184 TKDPEYL-KLIEQILNFLLKHFNTD----DG--GWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQA 256 (355)
T ss_dssp --HHHHH-HCHHHHHHHHHHC--TG----CC--T--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred cCchhHH-HHHHHHHHHHHHhcCcc----cC--CCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 6554332 24555555555443211 11 12211 111 5899999999999997764 244567777777
Q ss_pred HHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 020907 252 LRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIY 310 (320)
Q Consensus 252 l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~~~ 310 (320)
++...+... . ....+.|||.+|++..+..+++.+++++|.+.+++..
T Consensus 257 ~~~~~~~~~---~---------~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 257 LESILQKGL---F---------LNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp HHHHHHH-T---C---------TTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred HHHHHHccc---c---------CCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777664321 1 1237799999999999999999999999999888743
No 15
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=99.75 E-value=1.6e-17 Score=148.02 Aligned_cols=249 Identities=16% Similarity=0.171 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccC
Q 020907 42 DTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICG 121 (320)
Q Consensus 42 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G 121 (320)
...+..+.++++...-+. ....+.++..|-+|+.-.=..+++..++++-++....-...... ..+.-...++.|
T Consensus 86 ~~~L~~~~e~Vk~~~~~~-----~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~-~~~dlp~ElLyG 159 (403)
T KOG2787|consen 86 LYDLLLCLEIVKACLVAS-----RSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL-CSSDLPDELLYG 159 (403)
T ss_pred HHHHHHHHHHHHHHHhhc-----cccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc-CCccccHHHHhh
Confidence 346667777777764321 13457899999999987667777777776654433222222111 123345789999
Q ss_pred chh-HHHHHHHHHHHhCCHHHHHH----HHHHhh----hccCCCC----CCccc--------cccchHHHHHHHHHHhHh
Q 020907 122 RAG-VCALGAVLAKHAGDERLLDH----YLTKFK----EIKLPSD----LPNEL--------LYGRVGFLWACSFLNKHM 180 (320)
Q Consensus 122 ~aG-i~al~~~i~~~~g~~~~~~~----~l~~~~----~~~~~~~----~~~dl--------l~G~AG~l~~ll~l~~~~ 180 (320)
.+| +++. ..+++.+|.+..-+. +.+.+. ++..... ..+++ -+|.|||++.|+...-..
T Consensus 160 RaGYL~a~-lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~ 238 (403)
T KOG2787|consen 160 RAGYLWAC-LFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKV 238 (403)
T ss_pred HHHHHHHH-HHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCC
Confidence 999 5555 456888886543333 333221 1211111 22333 249999999998743333
Q ss_pred CCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHHHHHHccCC---CchhHHHHHHHHHHHHH
Q 020907 181 GKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIK 257 (320)
Q Consensus 181 ~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~~l~~ 257 (320)
.++. +-+.++.-++..++. ++.+ ++-|-.-.-..++.+-||||++|++++|+++++ ++++++.+.++-+-+
T Consensus 239 d~~~-~~~dVK~sldym~~~--rfps-GNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvV-- 312 (403)
T KOG2787|consen 239 DQPA-LLKDVKGSLDYMIQN--RFPS-GNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVV-- 312 (403)
T ss_pred cchh-HHHhhhhHHHHHHHc--cCCC-CCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHH--
Confidence 2322 223455566665553 1111 111110111134689999999999999999865 345666666665543
Q ss_pred ccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHHhhhhcc
Q 020907 258 NRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIYQIYC 314 (320)
Q Consensus 258 ~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~~~~~~c 314 (320)
|.... -.+.++.|||.+|++|+|+.+|.+++|.+||.+|+. |.+||
T Consensus 313 -------W~rGl---Lkkg~GichGvaGNaYvFLsLyRLT~d~kYlyRA~k-Fae~l 358 (403)
T KOG2787|consen 313 -------WKRGL---LKKGVGICHGVAGNAYVFLSLYRLTGDMKYLYRAKK-FAEWL 358 (403)
T ss_pred -------HHhhh---hhcCCcccccccCchhhhHhHHHHcCcHHHHHHHHH-HHHHH
Confidence 22222 134599999999999999999999999999999999 77877
No 16
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.59 E-value=7.6e-14 Score=138.93 Aligned_cols=236 Identities=18% Similarity=0.214 Sum_probs=168.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccc
Q 020907 40 VSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFI 119 (320)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~ 119 (320)
-.+.+.+.|.+.++.+.... .. ...+.+.+-|+|.+|+.|+++.++..++|....+.+.+.+............++|.
T Consensus 664 gk~~Y~~ia~~~L~~~~~sv-~~-~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i 741 (963)
T COG4403 664 GKDYYKEIAIKALQDSRKSV-NN-NLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFI 741 (963)
T ss_pred ChHHHHHHHHHHHHHHHHhh-hh-ccCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchh
Confidence 36678888888777754332 22 22346789999999999999999999998877777777766433222234568999
Q ss_pred cCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhcc---CC----CCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHH
Q 020907 120 CGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK---LP----SDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRA 192 (320)
Q Consensus 120 ~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~~---~~----~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~ 192 (320)
.|.+|+..++..+++.+..|+.++.++...+-+. .. +..-..+-+|.||++++|+.+++.++++.+. +
T Consensus 742 ~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~-----~ 816 (963)
T COG4403 742 NGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDSSETVLLGFSHGASGIILTLLKLYEATGEESLL-----K 816 (963)
T ss_pred hccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhccccccceecccccchHHHHHHHHHHHHhcCcHHHH-----H
Confidence 9999965555667998888888887766554331 11 1233456789999999999999999986543 2
Q ss_pred HHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHHHHHHcc---CCCchhHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 193 VVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDM---ELKPDEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 193 v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~~---~~~~~~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
.+..++.-.+.... . ...-||||+.||+..-+.. +.++...+.+..++.+.++..+.
T Consensus 817 ~i~e~~~~Er~~f~-----------~-~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glg-------- 876 (963)
T COG4403 817 KIKELLSYERMKFS-----------D-KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGLG-------- 876 (963)
T ss_pred HHHHHHHHHHHHHH-----------H-HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCC--------
Confidence 33333333332211 0 1356899999999874433 23445677788889988865331
Q ss_pred CCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 270 GSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 270 ~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
....|||.-|++-.++.+.+++.|++.++.|.+
T Consensus 877 ------n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~~~ 909 (963)
T COG4403 877 ------NDSLCHGDFGIIEVLLHYAKILSDSELLESANK 909 (963)
T ss_pred ------CccccccchHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 256999999999999999999999999999986
No 17
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.88 E-value=0.13 Score=48.07 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=115.7
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccC-chhHHHHHHHHHHHhCCHHHHHHHHHHhhh-cc-CC--
Q 020907 81 YLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICG-RAGVCALGAVLAKHAGDERLLDHYLTKFKE-IK-LP-- 155 (320)
Q Consensus 81 l~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G-~aGi~al~~~i~~~~g~~~~~~~~l~~~~~-~~-~~-- 155 (320)
..++.+++.++|++|++.+.++.+........ ...... ..|...+ .+++.++|+++.+.+++..+. +. ..
T Consensus 32 ~gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~---~~~~d~~~~g~~~~--~~y~~t~d~~y~~~~~~~a~~~l~~~~~~ 106 (336)
T PF07470_consen 32 YGLLEAYEYTGDERYLDYAERWADRFIEEDGS---DYNLDDHDIGFLLL--DLYERTGDEKYKDAAIQAADWLLARRPRT 106 (336)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT---TTSCCGTTHHHHHH--HHHHHH-THHHHHHHHHHHHHHHHTSCBE
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhccCC---ccCCchhhhHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Confidence 34557788999999999999998887643222 111111 2342222 247889998877766655552 21 00
Q ss_pred --------CCCCcc-ccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCccee-ec--Ccc---
Q 020907 156 --------SDLPNE-LLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WH--GKK--- 220 (320)
Q Consensus 156 --------~~~~~d-ll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~-w~--~~~--- 220 (320)
...+.. ++.|.-=.+-.+.+..+.++++++.+ ..++.+...-+...+. ...+.+. |. +..
T Consensus 107 ~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~----~a~~q~~~~~~~~~d~-~tGl~~h~~~~~~~~~~s 181 (336)
T PF07470_consen 107 SDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLD----EAVRQFRLTRKYLYDP-ETGLYYHGYTYQGYADWS 181 (336)
T ss_dssp CTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHH----HHHHHHHHHHHHHB-T-TTSSBESEEETTSSSTTS
T ss_pred CCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHH----HHHHHHHHHHHhccCC-CCCceeeccCCCCCcCcc
Confidence 011111 34455445566777788888865544 3333333333323221 1223221 21 111
Q ss_pred cCccccchHHHHHHHHc----cCCC----chhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHH
Q 020907 221 YWGAAHGLAGIMHVLMD----MELK----PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAK 292 (320)
Q Consensus 221 ylG~aHG~aGIl~~Ll~----~~~~----~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~ 292 (320)
...++-|.+=.++.|.. ++.. +.+.+.+++.++.+.+.|.++|-|+....++.....-=--|++.+++++++
T Consensus 182 ~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~ 261 (336)
T PF07470_consen 182 DSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLR 261 (336)
T ss_dssp T--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHH
T ss_pred cccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHH
Confidence 11244454433433333 3221 245677778888888777788888766543220001111477888888877
Q ss_pred HH--hhcCCHHHHHHHHHhhh
Q 020907 293 AA--EVILDEHCHFHCCLIYQ 311 (320)
Q Consensus 293 a~--~~~~d~~yl~~a~~~~~ 311 (320)
.. ...++++|.+.|++.+.
T Consensus 262 gi~~g~~d~~~y~~~a~~a~~ 282 (336)
T PF07470_consen 262 GIRLGLLDPEEYRPAAEKALE 282 (336)
T ss_dssp HHHTTSSTHHHHHHHHHHHHH
T ss_pred HHHcCCCccHHHHHHHHHHHH
Confidence 33 34557899999998443
No 18
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.80 E-value=0.35 Score=44.86 Aligned_cols=217 Identities=16% Similarity=0.125 Sum_probs=114.7
Q ss_pred HHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCc-hhHHHHHHHHHHHhCCHHHHHHHHHHhhhc---cCCCC-
Q 020907 83 LFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGR-AGVCALGAVLAKHAGDERLLDHYLTKFKEI---KLPSD- 157 (320)
Q Consensus 83 ~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~-aGi~al~~~i~~~~g~~~~~~~~l~~~~~~---~~~~~- 157 (320)
..++++.|+|++|++....+.+..+... ..+.-.+... +|... .-+++.++|+++++-+++....+ ...++
T Consensus 45 v~~~~eAT~d~~yl~~l~~~~d~~i~~~--g~~~~~id~i~~g~~L--~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG 120 (357)
T COG4225 45 VARAYEATGDAEYLDYLKTWFDEQIDEG--GLPPRNIDHIAAGLTL--LPLYEQTGDPRYLEAAIKLASWLVHEPRTKEG 120 (357)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhhhccC--CCCccchhhhccCcee--eehhhhhCCHHHHHHHHHHHHHHhhCcccCCC
Confidence 3456788999999999999988765431 1111222222 34211 23478899999888766555433 10011
Q ss_pred -------CCcc-ccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCccee-ecCc-------cc
Q 020907 158 -------LPNE-LLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGK-------KY 221 (320)
Q Consensus 158 -------~~~d-ll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~-w~~~-------~y 221 (320)
.|.. ++.|.-=-...+..+-+.++++.+.+ ++...-.-..+.+.+ ....|.|. |..+ ..
T Consensus 121 ~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d----~~~~QF~~~~~~l~D-p~TGL~YH~wd~~~~~~w~~~~ 195 (357)
T COG4225 121 GFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFD----EALYQFSLHEKYLRD-PETGLYYHGWDEDGTMPWANNE 195 (357)
T ss_pred ccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHH----HHHHHHHHHHHHccC-CCcCceEEeeccCCCCcccccc
Confidence 1221 23342212234455666777765444 333332222232222 23456553 4321 12
Q ss_pred Cc----cccchHHHHHHHHcc----CC-Cc---hhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHH
Q 020907 222 WG----AAHGLAGIMHVLMDM----EL-KP---DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLT 289 (320)
Q Consensus 222 lG----~aHG~aGIl~~Ll~~----~~-~~---~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~ 289 (320)
.| +|-|++=++.+|..+ +. .+ .+.+.++..++-+++.|..+|-|-....+......-=--|++||+++
T Consensus 196 sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYa 275 (357)
T COG4225 196 SGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYA 275 (357)
T ss_pred CCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHH
Confidence 33 444444444444432 32 22 24566777788888888889999776654211111123689999999
Q ss_pred HHHHHhh-cCCHHHHHHHHH
Q 020907 290 LAKAAEV-ILDEHCHFHCCL 308 (320)
Q Consensus 290 l~~a~~~-~~d~~yl~~a~~ 308 (320)
+++.... .-+++|...+++
T Consensus 276 llkgi~~G~l~~~~~~~~~k 295 (357)
T COG4225 276 LLKGINLGILDPEYAPVAEK 295 (357)
T ss_pred HHHHHhcCCCCchhhHHHHH
Confidence 9996653 224444444444
No 19
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.61 Score=47.18 Aligned_cols=227 Identities=14% Similarity=0.057 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCccccc-------Cchh-HHHH-HHHHHHHhCC--------
Q 020907 76 ALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFIC-------GRAG-VCAL-GAVLAKHAGD-------- 138 (320)
Q Consensus 76 ~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~-------G~aG-i~al-~~~i~~~~g~-------- 138 (320)
-+.++.+|.+.|+.++|+.|...+.++++-..+.... ...+|++ |.-| .|.- ..-+...+|+
T Consensus 275 nA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~s-p~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~ 353 (667)
T COG1331 275 NALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYS-PEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGEDAELACKY 353 (667)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-CCCceeecccccCcccCCCeeecCHHHHHHHhcccHHHHHHH
Confidence 3778899999999999999999998888766543111 1122332 2223 2211 1112333441
Q ss_pred ----------------------------HHHHHHHHHHhhhccC--CCC-CCccccccchHHH-HHHHHHHhHhCCCccc
Q 020907 139 ----------------------------ERLLDHYLTKFKEIKL--PSD-LPNELLYGRVGFL-WACSFLNKHMGKDTIS 186 (320)
Q Consensus 139 ----------------------------~~~~~~~l~~~~~~~~--~~~-~~~dll~G~AG~l-~~ll~l~~~~~~~~~~ 186 (320)
.+.++.+.+.+..... ... ..+-++.+--|.+ .+|....+.++++.+.
T Consensus 354 f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l 433 (667)
T COG1331 354 FDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGDPEYL 433 (667)
T ss_pred cccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCChHHH
Confidence 1122222222222211 112 3345778888874 4777888889888776
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCcceeecC--cccCccccchHHHHHHHHccCC---CchhHHHHHHHHHHHHHccC-
Q 020907 187 TAQMRAVVDEIIKAGRRLANRGRCPLMYEWHG--KKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF- 260 (320)
Q Consensus 187 ~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~--~~ylG~aHG~aGIl~~Ll~~~~---~~~~~~~i~~~l~~l~~~~~- 260 (320)
+ .++++.+.|.+..... .+.-.|.+ ..+.|+.-=.+=.+.+|+.++. +.++++.+++..+-++....
T Consensus 434 ~-~A~~~~~fi~~~l~~~------rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d 506 (667)
T COG1331 434 E-AAERAADFILDNLYVD------RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWD 506 (667)
T ss_pred H-HHHHHHHHHHHhhccc------chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcC
Confidence 5 7788888888765431 12223332 2356665555666666666542 45677777666666665433
Q ss_pred CCCCCCCCCCC-------CCCc-ccccccCchHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 020907 261 PSGNYPSSEGS-------ESDR-LVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLIY 310 (320)
Q Consensus 261 ~~gnwp~~~~~-------~~~~-~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~~~ 310 (320)
+.|.|-+..+. +.+. --.-=-|.+=++.+|+++..+++|.+|.+.|.++.
T Consensus 507 ~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L 564 (667)
T COG1331 507 DEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDIL 564 (667)
T ss_pred CCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Confidence 44345332211 0000 01122345778899999999999999999999843
No 20
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.20 E-value=0.61 Score=43.29 Aligned_cols=211 Identities=13% Similarity=0.117 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCC------
Q 020907 40 VSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS------ 113 (320)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~------ 113 (320)
-++++++-++...+.-+.+- +..+. .+=+=.+|.+| +-|++.|++++|++.+.++.+......+..
T Consensus 53 ~d~~yl~~l~~~~d~~i~~~----g~~~~--~id~i~~g~~L--~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H 124 (357)
T COG4225 53 GDAEYLDYLKTWFDEQIDEG----GLPPR--NIDHIAAGLTL--LPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQH 124 (357)
T ss_pred CcHHHHHHHHHHHHhhhccC----CCCcc--chhhhccCcee--eehhhhhCCHHHHHHHHHHHHHHhhCcccCCCcccc
Confidence 46778888777776654442 11111 22222344444 446789999999999998888776433211
Q ss_pred ----CCcccccCc--hhHHHHHHHHHHHhCCHHHHHHHHHHhhhc----c------------CCC-----CCCcc--ccc
Q 020907 114 ----GRVTFICGR--AGVCALGAVLAKHAGDERLLDHYLTKFKEI----K------------LPS-----DLPNE--LLY 164 (320)
Q Consensus 114 ----~~~~~~~G~--aGi~al~~~i~~~~g~~~~~~~~l~~~~~~----~------------~~~-----~~~~d--ll~ 164 (320)
..-=.+.|. +|.. .+.+.+.+|++++++..+.++.-. . .+. ....+ .+.
T Consensus 125 ~~~~p~Q~W~DtL~Ma~~F--~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fW 202 (357)
T COG4225 125 KVKYPHQMWLDTLYMAGLF--LAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFW 202 (357)
T ss_pred ccCchhHhhhcchhhhhHH--HHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceee
Confidence 011123343 3332 234578899999999988777431 0 000 00011 222
Q ss_pred c--chHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCc---ccCccccchHHHHHHHHc--
Q 020907 165 G--RVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGK---KYWGAAHGLAGIMHVLMD-- 237 (320)
Q Consensus 165 G--~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~---~ylG~aHG~aGIl~~Ll~-- 237 (320)
| .+=+..++-.+-+.++.+.=....+.++...++++-.++-+ .+.+.++--++ ...==+-|.|||+++|++
T Consensus 203 aRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd--e~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi 280 (357)
T COG4225 203 ARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD--ESGLWHTILDDGRPGSYLESSASAGFAYALLKGI 280 (357)
T ss_pred ecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc--cccchhhhhccCCCCCchhhhHHHHHHHHHHHHH
Confidence 2 22233444444444444321222344444444444333322 22332121122 122235688999999998
Q ss_pred -cC-CCchhHHHHHHHHHHHHHccCCC
Q 020907 238 -ME-LKPDEVEDVKGTLRYMIKNRFPS 262 (320)
Q Consensus 238 -~~-~~~~~~~~i~~~l~~l~~~~~~~ 262 (320)
.. +.+++.+.++++++-++....++
T Consensus 281 ~~G~l~~~~~~~~~kA~~aLl~~i~~~ 307 (357)
T COG4225 281 NLGILDPEYAPVAEKALDALLGHIDEE 307 (357)
T ss_pred hcCCCCchhhHHHHHHHHHHHhhcccc
Confidence 33 36677788888888888755543
No 21
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.38 E-value=2.5 Score=39.96 Aligned_cols=224 Identities=16% Similarity=0.090 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCC---CCCcccc--cC------c----hh--HHHHHHHHHHHhCCH
Q 020907 77 LGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRD---SGRVTFI--CG------R----AG--VCALGAVLAKHAGDE 139 (320)
Q Consensus 77 aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~---~~~~~~~--~G------~----aG--i~al~~~i~~~~g~~ 139 (320)
+=.+++|.+.+.+++++++++.|.+.++-+.+.... ..-...+ .| . -+ +.++ +.+++.++++
T Consensus 56 ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~al-a~~~~at~d~ 134 (384)
T cd00249 56 ARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAA-AQAAKVGGDP 134 (384)
T ss_pred cHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHH-HHHHHhcCCH
Confidence 445688888888999999999988887776543211 1000001 11 1 11 1222 2347778999
Q ss_pred HHHHHHHHHhhhc---cCCCC-------CC-ccccccchHH---HHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhh
Q 020907 140 RLLDHYLTKFKEI---KLPSD-------LP-NELLYGRVGF---LWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLA 205 (320)
Q Consensus 140 ~~~~~~l~~~~~~---~~~~~-------~~-~dll~G~AG~---l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~ 205 (320)
+.++.+.+.+..+ ..... .+ .....+..++ +.+++.+.+.++++.+.+ .++++++.+++......
T Consensus 135 ~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~-~A~~l~~~~~~~~~~~~ 213 (384)
T cd00249 135 EARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLD-RADEIADLILDRFIDAE 213 (384)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHhcCcc
Confidence 8777665544332 00000 01 1112233444 356777888888776654 56666666665432110
Q ss_pred hcCCCCcceeecC---------c-ccCccccchHHHHHHHHccC---CCchhHHHHHHHHHHHHHccC-C-CCCCCC-CC
Q 020907 206 NRGRCPLMYEWHG---------K-KYWGAAHGLAGIMHVLMDME---LKPDEVEDVKGTLRYMIKNRF-P-SGNYPS-SE 269 (320)
Q Consensus 206 ~~~~~~l~~~w~~---------~-~ylG~aHG~aGIl~~Ll~~~---~~~~~~~~i~~~l~~l~~~~~-~-~gnwp~-~~ 269 (320)
...+ +...+ + ...-.+|..- .+..|+++. .++++.+.+++.+++..+... + .|.|.. ..
T Consensus 214 ---~G~~-~e~~~~~~~~~~~~~~~~~~Pgh~~e-~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~ 288 (384)
T cd00249 214 ---SGVV-REHFDEDWNPYNGDKGRHQEPGHQFE-WAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFL 288 (384)
T ss_pred ---cCeE-EEEECCCCCCCcCcCCCcCCCchHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeE
Confidence 0111 11100 0 1111234332 344555543 244678889999998887654 3 355554 22
Q ss_pred CC----CCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHHh
Q 020907 270 GS----ESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCLI 309 (320)
Q Consensus 270 ~~----~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~~ 309 (320)
.. ..+....|+|.- .+.+++.++++++|++|++.++++
T Consensus 289 ~~~~~~~~~~~~~w~~~E--~~~a~~~l~~~tgd~~~~~~~~~~ 330 (384)
T cd00249 289 DDGGLLEDDDKRWWPQTE--ALKAALALAGITGDERYWQWYQRA 330 (384)
T ss_pred CCCCCcccccccccHHHH--HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 21 123346687443 455666789999999999999874
No 22
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.34 E-value=2.4 Score=39.55 Aligned_cols=214 Identities=13% Similarity=0.116 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCC-----
Q 020907 39 AVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS----- 113 (320)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~----- 113 (320)
+-++++++.+.+..+...++..+ ...+-+=..|..+ +.+++.+++++|.+.+.+..+.++......
T Consensus 41 tgd~~~~~~a~~~~~~~~~~~~~-------~~~~d~~~~g~~~--~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~ 111 (336)
T PF07470_consen 41 TGDERYLDYAERWADRFIEEDGS-------DYNLDDHDIGFLL--LDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGF 111 (336)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHT-------TTSCCGTTHHHHH--HHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCB
T ss_pred HCCHHHHHHHHHHHHHHHhccCC-------ccCCchhhhHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 34667888887776665544312 1111122344444 557899999999999999988655322110
Q ss_pred ------CCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhhhc-----cC-----------CCC-CCcc--ccccchH
Q 020907 114 ------GRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI-----KL-----------PSD-LPNE--LLYGRVG 168 (320)
Q Consensus 114 ------~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~~~-----~~-----------~~~-~~~d--ll~G~AG 168 (320)
..-.+..+.-=...+++..++.+||+++.+.+.+++... .. ... ...+ +-.|.+=
T Consensus 112 ~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW 191 (336)
T PF07470_consen 112 WHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGW 191 (336)
T ss_dssp ECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHH
T ss_pred ccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhH
Confidence 111233333212344455588899999988887777542 00 000 1113 4556666
Q ss_pred HHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeec--Ccc--cCccccchHHHHHHHHc-c--C-C
Q 020907 169 FLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWH--GKK--YWGAAHGLAGIMHVLMD-M--E-L 240 (320)
Q Consensus 169 ~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~--~~~--ylG~aHG~aGIl~~Ll~-~--~-~ 240 (320)
+++++..+.+.++++.-....+.++++.+.+.-.++.. ..+ .|.|. ... ...=+-|.+.++++|++ + . .
T Consensus 192 ~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~--~~G-~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~ 268 (336)
T PF07470_consen 192 AIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD--EDG-LWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLL 268 (336)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST--TTS-BEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC--CCC-CcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCC
Confidence 67777777777755221112233333333332222111 122 23332 111 12223466777777765 2 2 2
Q ss_pred -CchhHHHHHHHHHHHHHc-cCCCCC
Q 020907 241 -KPDEVEDVKGTLRYMIKN-RFPSGN 264 (320)
Q Consensus 241 -~~~~~~~i~~~l~~l~~~-~~~~gn 264 (320)
.+++.+.+.++++.+.+. ..++|.
T Consensus 269 d~~~y~~~a~~a~~~l~~~~~~~dG~ 294 (336)
T PF07470_consen 269 DPEEYRPAAEKALEALLSNAIDPDGK 294 (336)
T ss_dssp THHHHHHHHHHHHHHHHHCEB-TTSS
T ss_pred ccHHHHHHHHHHHHHHHhCccCCCCC
Confidence 346788999999999986 446665
No 23
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=94.74 E-value=3.7 Score=40.97 Aligned_cols=218 Identities=13% Similarity=0.039 Sum_probs=116.2
Q ss_pred cHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCC------Ccc------cccC------chh-HHHHHHHHHHHh
Q 020907 76 ALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSG------RVT------FICG------RAG-VCALGAVLAKHA 136 (320)
Q Consensus 76 ~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~------~~~------~~~G------~aG-i~al~~~i~~~~ 136 (320)
+.|.++++ ..++|++..+.+.++|+.+.+.+.+.. ... ...- ..| ++.-+...++.+
T Consensus 66 l~a~a~~~----~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~t 141 (520)
T PF07944_consen 66 LEAAAYAY----AYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEAT 141 (520)
T ss_pred HHHHHHHH----HHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHH
Confidence 44555444 468899999999999998775432210 000 0000 023 222222236779
Q ss_pred CCHHHHHHHHHHhhhc---c--CCC-CCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHH-h---hh
Q 020907 137 GDERLLDHYLTKFKEI---K--LPS-DLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRR-L---AN 206 (320)
Q Consensus 137 g~~~~~~~~l~~~~~~---~--~~~-~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~-~---~~ 206 (320)
|+++.++.+.+..+-+ . +.. .....+..|..|+..++..+++.++++++++ +++.+++..-. . ..
T Consensus 142 G~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~-----lA~~f~~~~~~~~~~~~~ 216 (520)
T PF07944_consen 142 GNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLD-----LAEYFVDQRGFDPYDLAY 216 (520)
T ss_pred CcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHH-----HHHHHHHHhCCCCCchhh
Confidence 9987766444333222 1 111 1123355688899999999999999987654 44444442110 0 00
Q ss_pred -cCCCCcceeecCcccCccccch------HHHHHHHHccCCCchhHHHHHHHHHHHHHccC-CCCCCCCC---C--CC--
Q 020907 207 -RGRCPLMYEWHGKKYWGAAHGL------AGIMHVLMDMELKPDEVEDVKGTLRYMIKNRF-PSGNYPSS---E--GS-- 271 (320)
Q Consensus 207 -~~~~~l~~~w~~~~ylG~aHG~------aGIl~~Ll~~~~~~~~~~~i~~~l~~l~~~~~-~~gnwp~~---~--~~-- 271 (320)
....|. +| .+.-..|.+ +|.+-. .+...++++.+.++...+.+...+. ..|...+. . +.
T Consensus 217 ~~d~~~~---~~--a~~~~~h~vr~~y~~~g~a~~-y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~ 290 (520)
T PF07944_consen 217 GQDHLPG---RH--ANTHIGHAVRAMYLYSGAADL-YEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPY 290 (520)
T ss_pred cCccCCC---cc--ccceeeEEEEhhhhhhHHHHH-HHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCC
Confidence 001111 11 123333443 344322 2222356778888888888765433 33332222 1 00
Q ss_pred --CCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 272 --ESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 272 --~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
+......=...+.+.+....+++++++|.+|.+.+++
T Consensus 291 ~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er 329 (520)
T PF07944_consen 291 DLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYER 329 (520)
T ss_pred CCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 0110011224567777777888999999999999998
No 24
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=1.3 Score=44.85 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=85.0
Q ss_pred cCCCCCcccccHHHH-HHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCC-CCcccccCch---h-H--HHHH----HHHH
Q 020907 66 RVQDYTLYTGALGTA-YLLFKAYQVTKNDNELKLCCDIVEACDSASRDS-GRVTFICGRA---G-V--CALG----AVLA 133 (320)
Q Consensus 66 ~~~~~~ly~G~aGia-l~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~-~~~~~~~G~a---G-i--~al~----~~i~ 133 (320)
...|..+++++-|.+ ..+.+.++++++++|++.|.+..+.+.+..... -...++.|.+ | . |+++ ..++
T Consensus 402 P~~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~ly 481 (667)
T COG1331 402 PSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALY 481 (667)
T ss_pred CCCCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHH
Confidence 456889999999987 667788899999999999998888766543221 1234444433 1 1 2221 1247
Q ss_pred HHhCCHHHHHHHHHHhhhc-------c-------------C--CC-CCCccccccchHHHHHHHHHHhHhCCCcccHHHH
Q 020907 134 KHAGDERLLDHYLTKFKEI-------K-------------L--PS-DLPNELLYGRVGFLWACSFLNKHMGKDTISTAQM 190 (320)
Q Consensus 134 ~~~g~~~~~~~~l~~~~~~-------~-------------~--~~-~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i 190 (320)
+.+++.++++.+.+..+++ . . .+ .......+|.|=++.+|+.+...+++..+
T Consensus 482 e~t~d~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y----- 556 (667)
T COG1331 482 EATGDLAYLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARY----- 556 (667)
T ss_pred HhhCcHHHHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhH-----
Confidence 8889999998877666553 0 0 00 11223456778899999999999998655
Q ss_pred HHHHHHHHHH
Q 020907 191 RAVVDEIIKA 200 (320)
Q Consensus 191 ~~v~~~ii~~ 200 (320)
.+.++.++++
T Consensus 557 ~e~A~~~L~a 566 (667)
T COG1331 557 LEAAEDILQA 566 (667)
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 25
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=91.24 E-value=1.4 Score=44.08 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhc-------C
Q 020907 39 AVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSAS-------R 111 (320)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~-------~ 111 (320)
.=++++++.+.++.+-+.+.. ...+..+.....+.|..|+-..+.+||++|+|++|++.|..+++...... .
T Consensus 141 tG~~~~L~v~~k~ad~~~~~~-~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d 219 (520)
T PF07944_consen 141 TGNERALDVATKLADWVYRRL-SRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQD 219 (520)
T ss_pred HCcHHHHHHHHHHHHHHHHHh-ccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCc
Confidence 346678888887777762211 22222333456888999999999999999999999999999998643211 0
Q ss_pred --CCCCcccccCc---hh-HHHHHHHHHHHhCCHHHHHHHHHHhhhcc-----------CC---C------CCCccc---
Q 020907 112 --DSGRVTFICGR---AG-VCALGAVLAKHAGDERLLDHYLTKFKEIK-----------LP---S------DLPNEL--- 162 (320)
Q Consensus 112 --~~~~~~~~~G~---aG-i~al~~~i~~~~g~~~~~~~~l~~~~~~~-----------~~---~------~~~~dl--- 162 (320)
......-..|- +. .+.-.+.++..+||+++++.+....+.+. .. . ..+.+.
T Consensus 220 ~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~~~~~ 299 (520)
T PF07944_consen 220 HLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNRLAYA 299 (520)
T ss_pred cCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcCCCCc
Confidence 00010111111 11 12222345788999887765444443320 00 0 011111
Q ss_pred -cccchHHHHHHHHHHhHhCCCcccH
Q 020907 163 -LYGRVGFLWACSFLNKHMGKDTIST 187 (320)
Q Consensus 163 -l~G~AG~l~~ll~l~~~~~~~~~~~ 187 (320)
.=...+.+.....+.+.+++..+.+
T Consensus 300 EtCas~~~~~~~~~L~~~tgd~~yaD 325 (520)
T PF07944_consen 300 ETCASVNMMKLARRLFRLTGDARYAD 325 (520)
T ss_pred cccHHHHHHHHHHHHHhcCCCchHHH
Confidence 1145666777777888888876654
No 26
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=86.33 E-value=16 Score=34.54 Aligned_cols=140 Identities=7% Similarity=-0.033 Sum_probs=80.2
Q ss_pred cccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeec--Ccc-cCcc-ccchHHHHHHHHcc
Q 020907 163 LYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWH--GKK-YWGA-AHGLAGIMHVLMDM 238 (320)
Q Consensus 163 l~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~--~~~-ylG~-aHG~aGIl~~Ll~~ 238 (320)
++..|=.++++...++..+++.+++ .+++.++.|.+.... .....+.+.+. ++. ..+. .-..+=++.+|+.+
T Consensus 52 ~~~~ar~i~~~a~a~~~~~~~~~l~-~A~~~~~fl~~~~~d---~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~ 127 (384)
T cd00249 52 LWLQARQVYCFAVAYLLGWRPEWLE-AAEHGLEYLDRHGRD---PDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQA 127 (384)
T ss_pred EEEecHHHHHHHHHHHhcCChhHHH-HHHHHHHHHHHhCcC---CCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHH
Confidence 6677778888888888888876654 677777777774321 01022223332 111 1122 22333444445544
Q ss_pred C---CCchhHHHHHHHHHHHHHccC-CCCCCC-CCCCCCCCcccccccCchH-HHHHHHHHHhhcCCHHHHHHHHHh
Q 020907 239 E---LKPDEVEDVKGTLRYMIKNRF-PSGNYP-SSEGSESDRLVHWCHGAPG-VTLTLAKAAEVILDEHCHFHCCLI 309 (320)
Q Consensus 239 ~---~~~~~~~~i~~~l~~l~~~~~-~~gnwp-~~~~~~~~~~~~WCHGa~G-i~~~l~~a~~~~~d~~yl~~a~~~ 309 (320)
+ .++++++.++++++++.+... +.|.+- ....+ .....+ .-.+. .+.+++.++.+++|++|++.|++.
T Consensus 128 ~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~-~~~~~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l 201 (384)
T cd00249 128 AKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPG-TPPYRG--SNPHMHLLEAMLAAYEATGEQKYLDRADEI 201 (384)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC-CCCCCC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 366789999999999987654 334332 11111 011111 12222 234678889999999999999873
No 27
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=85.50 E-value=3.4 Score=37.91 Aligned_cols=67 Identities=13% Similarity=0.261 Sum_probs=42.9
Q ss_pred HHHHHHHHccC---CCchhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCc--ccccccC-chHHHHHHHHHHh
Q 020907 229 AGIMHVLMDME---LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR--LVHWCHG-APGVTLTLAKAAE 295 (320)
Q Consensus 229 aGIl~~Ll~~~---~~~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~--~~~WCHG-a~Gi~~~l~~a~~ 295 (320)
.--+..|++++ .++.+.+.+.++++|+++.|+++|.||-.-...... -+-+|=. ...++.+|..+++
T Consensus 47 ~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~ 119 (290)
T TIGR02474 47 VTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIAN 119 (290)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHh
Confidence 44455666664 256788999999999999999999999755321111 1223333 4455666656554
No 28
>PLN03012 Camelliol C synthase
Probab=82.69 E-value=9.6 Score=39.74 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=60.9
Q ss_pred cccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccc---hHHHHHHHH-
Q 020907 161 ELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHG---LAGIMHVLM- 236 (320)
Q Consensus 161 dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG---~aGIl~~Ll- 236 (320)
+..||++-.+.+|..+.+...+ ...|++.++.|++.-+....-+.+ .-++..+.|.|.--| +...+++|+
T Consensus 616 ~y~YgT~~aL~aL~a~g~~~~~----~~~Irrav~fLls~Q~~DGGWGEs--~~Sc~~~~y~~~~~~~S~~~qTaWAl~a 689 (759)
T PLN03012 616 CFTYGTWFALAGLAAAGKTFND----CEAIRKGVHFLLAAQKDNGGWGES--YLSCPKKIYIAQEGEISNLVQTAWALMG 689 (759)
T ss_pred cCCcHHHHHHHHHHHhCccCCC----cHHHHHHHHHHHHhcCCCCCcCCC--CCCCCCccccCCCCCCCcHHHHHHHHHH
Confidence 4567888888888766544433 247899999999763321100000 011224456664311 345555544
Q ss_pred --ccCCCchhHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 237 --DMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 237 --~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
.+........-|+++++|+++.|.++|.||-..
T Consensus 690 Li~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~ 724 (759)
T PLN03012 690 LIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQE 724 (759)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCce
Confidence 333322223469999999999999999998643
No 29
>PLN02993 lupeol synthase
Probab=82.06 E-value=14 Score=38.71 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=60.5
Q ss_pred ccccchHHHHHHHHHHhHhCCCc--ccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHHHHHHccC
Q 020907 162 LLYGRVGFLWACSFLNKHMGKDT--ISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME 239 (320)
Q Consensus 162 ll~G~AG~l~~ll~l~~~~~~~~--~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~~~ 239 (320)
...+++-.+-+|..+.+..++.. -.++.+++.++.|.+.-+. .-+|++.--..+..|.+-.+.+|..+.
T Consensus 562 ~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~---------DGSW~G~Wgv~y~YgT~~aL~aL~a~G 632 (763)
T PLN02993 562 YVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTP---------DGSWYGNWGICFIYATWFALGGLAAAG 632 (763)
T ss_pred CcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCC---------CCCcccccccccCcHHHHHHHHHHHcC
Confidence 34577888888877765433321 0133556666666553211 123544322333348888888887665
Q ss_pred CCchhHHHHHHHHHHHHHccCCCCCCCCC
Q 020907 240 LKPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (320)
Q Consensus 240 ~~~~~~~~i~~~l~~l~~~~~~~gnwp~~ 268 (320)
......+.|+++++|+++.|.++|.|.-+
T Consensus 633 ~~~~~~~~IrrAv~fLls~Q~~DGGWGEs 661 (763)
T PLN02993 633 KTYNDCLAMRKGVHFLLTIQRDDGGWGES 661 (763)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCCCcCcC
Confidence 54334568999999999999999999644
No 30
>PLN02993 lupeol synthase
Probab=81.72 E-value=10 Score=39.52 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=58.4
Q ss_pred cccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccc--cc-hHHHHHH---
Q 020907 161 ELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAA--HG-LAGIMHV--- 234 (320)
Q Consensus 161 dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~a--HG-~aGIl~~--- 234 (320)
...||++-.+.+|..+.+...+ ...|++.++.|++..+....-+.+ ..++.++.|.|.- +. +.+.+++
T Consensus 616 ~y~YgT~~aL~aL~a~G~~~~~----~~~IrrAv~fLls~Q~~DGGWGEs--~~S~~~~~y~~~~~~~St~~qTAwAlla 689 (763)
T PLN02993 616 CFIYATWFALGGLAAAGKTYND----CLAMRKGVHFLLTIQRDDGGWGES--YLSCPEQRYIPLEGNRSNLVQTAWAMMG 689 (763)
T ss_pred ccCcHHHHHHHHHHHcCCCCCC----cHHHHHHHHHHHHhcCCCCCcCcC--cCcCCCcccccCCCCCCchhhHHHHHHH
Confidence 4667888888888654432221 137899999999864321100000 0112244565422 11 1444444
Q ss_pred HHccCCCchhHHHHHHHHHHHHHccCCCCCCCCC
Q 020907 235 LMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (320)
Q Consensus 235 Ll~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~~ 268 (320)
|+.+....+..+.|+++++|+++.|.++|.||-.
T Consensus 690 L~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~ 723 (763)
T PLN02993 690 LIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQ 723 (763)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCc
Confidence 4444333333457999999999989999999864
No 31
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=81.05 E-value=1.1 Score=41.16 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=41.6
Q ss_pred HHHHHHHHccC---CCchhHHHHHHHHHHHHHccCCCCCCCCCCCCCCCc--ccccc-cCchHHHHHHHHHHhhcCCH
Q 020907 229 AGIMHVLMDME---LKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDR--LVHWC-HGAPGVTLTLAKAAEVILDE 300 (320)
Q Consensus 229 aGIl~~Ll~~~---~~~~~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~--~~~WC-HGa~Gi~~~l~~a~~~~~d~ 300 (320)
..=+..|++++ .++.+.+.+.++|+|+++-|+++|.||-.-...... -+.+= .-..+++..|..+++-.++.
T Consensus 42 ~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 42 TTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp HHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 44455677765 356789999999999999999999998643221111 11111 22356666677777766655
No 32
>PLN03012 Camelliol C synthase
Probab=78.34 E-value=21 Score=37.26 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHhHhCCCc--ccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHHHHHHccCCCch
Q 020907 166 RVGFLWACSFLNKHMGKDT--ISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD 243 (320)
Q Consensus 166 ~AG~l~~ll~l~~~~~~~~--~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~~~~~~~ 243 (320)
++-.+-+|..+.+..++.. -.+..|++.++.|.+.-+. .-.|.+.--.-+-.|.+-.+.+|..+.....
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~---------DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~ 636 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQML---------DGSWYGNWGICFTYGTWFALAGLAAAGKTFN 636 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCC---------CCCCcccccccCCcHHHHHHHHHHHhCccCC
Confidence 5556777777666544321 0134566666666654221 1234443222222467777777766644322
Q ss_pred hHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 244 EVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 244 ~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
..+.|+++++|+++.|.++|.|.-+.
T Consensus 637 ~~~~Irrav~fLls~Q~~DGGWGEs~ 662 (759)
T PLN03012 637 DCEAIRKGVHFLLAAQKDNGGWGESY 662 (759)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcCCCC
Confidence 24689999999999999999997554
No 33
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.01 E-value=14 Score=36.43 Aligned_cols=97 Identities=19% Similarity=0.222 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCc
Q 020907 43 TLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGR 122 (320)
Q Consensus 43 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~ 122 (320)
+++..+..+.+.|-.- +... ..-.-.|.|..||=+++.+||++|++++|++.|...++.-.......+....-.|-
T Consensus 151 ~lldV~~rlADhi~tv-fgp~---~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gH 226 (589)
T COG3533 151 RLLDVVCRLADHIATV-FGPE---EDQVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGH 226 (589)
T ss_pred hHHHHHHHHHHhhhhh-cCcc---ccccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhh
Confidence 3555555555554222 2211 22456899999999999999999999999999999998643221101111122333
Q ss_pred hh--HHHH--HHHHHHHhCCHHHHH
Q 020907 123 AG--VCAL--GAVLAKHAGDERLLD 143 (320)
Q Consensus 123 aG--i~al--~~~i~~~~g~~~~~~ 143 (320)
|= +|.+ .+-++...||+.+.+
T Consensus 227 Avr~iyl~~G~A~l~~~~gDds~r~ 251 (589)
T COG3533 227 AVRQIYLYIGAADLAEETGDDSLRQ 251 (589)
T ss_pred HHHHHHHhhhHHHHHHHhCCHHHHH
Confidence 22 2221 133577789865443
No 34
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=77.68 E-value=1.1 Score=28.58 Aligned_cols=34 Identities=29% Similarity=0.687 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCCcccccc
Q 020907 247 DVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 280 (320)
Q Consensus 247 ~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WC 280 (320)
.++++++|+++.|.++|-|....+...+-...||
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~ 35 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYC 35 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHH
Confidence 4678899999999999999766543333333444
No 35
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=77.13 E-value=5.6 Score=37.89 Aligned_cols=135 Identities=13% Similarity=0.059 Sum_probs=72.0
Q ss_pred HHHHHHHHHhHhCCC-----cccHHHHHHHHHHHHHHhHHhhhcCCCCcceee----cCccc-CccccchHHHHHHHH-c
Q 020907 169 FLWACSFLNKHMGKD-----TISTAQMRAVVDEIIKAGRRLANRGRCPLMYEW----HGKKY-WGAAHGLAGIMHVLM-D 237 (320)
Q Consensus 169 ~l~~ll~l~~~~~~~-----~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w----~~~~y-lG~aHG~aGIl~~Ll-~ 237 (320)
..++++..++.++++ ++++ ..+++.+.++..-... .....+.|.- .+..| .-.+.|.+-++.+-+ +
T Consensus 93 ~~la~l~aye~t~~~~~~~~~yL~-~A~~i~~~~~~~wd~~--~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~ 169 (370)
T PF03663_consen 93 WALALLRAYELTGDQPSDNPKYLD-LAKEIFDFLISGWDDT--SCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYR 169 (370)
T ss_dssp HHHHHHHHHHHH--H-----HHHH-HHHHHHHHHHHTB-SG--G-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcchHHHHHH-HHHHHHHHHHHhcCCc--cCCCCccccccccCCCCCcccccchHHHHHHHHHHHH
Confidence 456788888888887 6665 6777887777332211 0012344441 11122 334556555555433 3
Q ss_pred cCCCchhHHHHHHHHHHHHH-ccC-CC-CCCCCCCCCC------CCcccccccCchHHHHHHHHHHhhcCCH-HHHHHHH
Q 020907 238 MELKPDEVEDVKGTLRYMIK-NRF-PS-GNYPSSEGSE------SDRLVHWCHGAPGVTLTLAKAAEVILDE-HCHFHCC 307 (320)
Q Consensus 238 ~~~~~~~~~~i~~~l~~l~~-~~~-~~-gnwp~~~~~~------~~~~~~WCHGa~Gi~~~l~~a~~~~~d~-~yl~~a~ 307 (320)
...++.+++.++++.+|+.+ ... ++ |..-+..... .......+.|. ++-+++.+|++++++ +||+.|+
T Consensus 170 ~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~--~l~a~~~Ly~~T~~~~~yl~~A~ 247 (370)
T PF03663_consen 170 ITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGV--FLGAAAYLYNATNDEQTYLDRAE 247 (370)
T ss_dssp HH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHH--HHHHHHHHHHHH--H-HHHHHHH
T ss_pred hcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHH--HHHHHHHHHHhcCCccHHHHHHH
Confidence 33455789999999999987 322 32 4433332111 11123344444 466778889999887 9999999
Q ss_pred H
Q 020907 308 L 308 (320)
Q Consensus 308 ~ 308 (320)
+
T Consensus 248 ~ 248 (370)
T PF03663_consen 248 K 248 (370)
T ss_dssp H
T ss_pred H
Confidence 7
No 36
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=76.64 E-value=62 Score=29.75 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=83.8
Q ss_pred CCCcccc-cHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCcccccCchhHHHHHHHHHHH-hCCHHHHHHHH
Q 020907 69 DYTLYTG-ALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTFICGRAGVCALGAVLAKH-AGDERLLDHYL 146 (320)
Q Consensus 69 ~~~ly~G-~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~~~G~aGi~al~~~i~~~-~g~~~~~~~~l 146 (320)
..++=+| +.--+-+|.++++.++++.|.+.+.+.++-++....+.....-+.-..|-|. .+. ++|.. .-..+
T Consensus 38 ~~TiDN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~-----~~ITfND~a-m~~vl 111 (290)
T TIGR02474 38 SGTIDNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYS-----DAITYNDNA-MVNVL 111 (290)
T ss_pred cccccCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcc-----cccccCcHH-HHHHH
Confidence 4455555 4455577788999999999999999999888764332211111111111000 111 12211 11223
Q ss_pred HHhhhccCCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCccee-ecCc------
Q 020907 147 TKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGK------ 219 (320)
Q Consensus 147 ~~~~~~~~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~-w~~~------ 219 (320)
+.+..+... ..+++++. .+. .++ ....+.+.++.|+++-.. ..+..+ .|. -|+.
T Consensus 112 ~lL~~i~~~-~~~~~~~~-~~~-------------~~r-~~~Ai~Rgid~ILktQ~~--~gg~~t-~Wg~Qyd~~tl~Pa 172 (290)
T TIGR02474 112 TLLDDIANG-KDPFDVFP-DST-------------RTR-AKTAVTKGIECILKTQVV--QNGKLT-VWCQQHDALTLQPK 172 (290)
T ss_pred HHHHHHHhc-cCCccccc-HHH-------------HHH-HHHHHHHHHHHHHHhhcc--cCCcCC-chhhccCccccccc
Confidence 333222100 00111110 000 001 123566677777775322 111001 111 1221
Q ss_pred -----ccCc-cccchHHHHHHHHccC-CCchhHHHHHHHHHHHHHccCC
Q 020907 220 -----KYWG-AAHGLAGIMHVLMDME-LKPDEVEDVKGTLRYMIKNRFP 261 (320)
Q Consensus 220 -----~ylG-~aHG~aGIl~~Ll~~~-~~~~~~~~i~~~l~~l~~~~~~ 261 (320)
+... .+|=.+||+..||..+ .++++.+.|..+++|+.+...+
T Consensus 173 ~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~ 221 (290)
T TIGR02474 173 KARAYELPSLSSSESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIR 221 (290)
T ss_pred cccccCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 1122 2456789999999987 4678899999999999876544
No 37
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=75.45 E-value=47 Score=33.23 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=88.4
Q ss_pred HHhCCHHHHHHHHHHhhh-ccC--CCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCC
Q 020907 134 KHAGDERLLDHYLTKFKE-IKL--PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRC 210 (320)
Q Consensus 134 ~~~g~~~~~~~~l~~~~~-~~~--~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~ 210 (320)
..+|..+..+++++.+.+ +.+ ..+..-.++-=..=+|-+|+-.+...+++.+++ .+.++.+.|+..-+.. ...
T Consensus 122 ~IMgl~~Ef~~a~~~V~~~l~f~~~~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL~-kA~dLgd~Ll~AFdTp---tgi 197 (522)
T PTZ00470 122 KIMGLKKEYKEGRDWVANNLKQSKDTGLGVSVFETTIRVLGGLLSAYDLTGDEMYLE-KAREIADRLLPAFNED---TGF 197 (522)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCCCCCCeeeeeeeehhhHhHHHHHHHHcCCHHHHH-HHHHHHHHHHHhhcCC---CCC
Confidence 457888888888877754 443 222211222111222333444444555555544 6778888888764321 223
Q ss_pred Ccc-eeecCc--ccC---ccccchHHHHHHHHcc------CCCchhHHHHHHHHHHHHHccCC-CCCCCCCCCCCCCccc
Q 020907 211 PLM-YEWHGK--KYW---GAAHGLAGIMHVLMDM------ELKPDEVEDVKGTLRYMIKNRFP-SGNYPSSEGSESDRLV 277 (320)
Q Consensus 211 ~l~-~~w~~~--~yl---G~aHG~aGIl~~Ll~~------~~~~~~~~~i~~~l~~l~~~~~~-~gnwp~~~~~~~~~~~ 277 (320)
|.. +.+... ... +-+-.+|.+....+++ -.++.+.+.++++.+.+.+.+.. .|-||..... ..-
T Consensus 198 P~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~---~~g 274 (522)
T PTZ00470 198 PASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNP---DAG 274 (522)
T ss_pred CcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECC---ccC
Confidence 421 223211 111 2222334444443333 23678888999999888765544 6889876532 122
Q ss_pred ccccCchHHH-------HHHHHHHhhcC--CHHHHHHHH
Q 020907 278 HWCHGAPGVT-------LTLAKAAEVIL--DEHCHFHCC 307 (320)
Q Consensus 278 ~WCHGa~Gi~-------~~l~~a~~~~~--d~~yl~~a~ 307 (320)
.|+.+..|+. --+++.+..++ |+.|++.-.
T Consensus 275 ~~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~~ 313 (522)
T PTZ00470 275 RFCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLFV 313 (522)
T ss_pred ccCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4554444433 45788888884 766665443
No 38
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=75.11 E-value=58 Score=30.31 Aligned_cols=222 Identities=17% Similarity=0.180 Sum_probs=103.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCCCCccc---------ccCchhH----HHHHHH-HHHHhCCHHHHHH
Q 020907 79 TAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDSGRVTF---------ICGRAGV----CALGAV-LAKHAGDERLLDH 144 (320)
Q Consensus 79 ial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~~~~~~---------~~G~aGi----~al~~~-i~~~~g~~~~~~~ 144 (320)
.+++|.+++. .+++.+++.|...++-+.+.......-++ ..+...+ +++.++ -+..+++++..+.
T Consensus 26 ~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-TTHHHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCChhHHHH
Confidence 4688888888 78999999988887766543221111111 1111111 222221 1456788876665
Q ss_pred HHHHhhhc-----cCCCCC-----Ccc--ccccchH---HHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcC-
Q 020907 145 YLTKFKEI-----KLPSDL-----PNE--LLYGRVG---FLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRG- 208 (320)
Q Consensus 145 ~l~~~~~~-----~~~~~~-----~~d--ll~G~AG---~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~- 208 (320)
+.+.+..+ ...... +.+ ..-+..- .+-+++.+++.++++.+.+ .++++++.++.. .....
T Consensus 105 A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~-~a~~l~~~~~~~---f~~~~~ 180 (346)
T PF07221_consen 105 AEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLD-RAEELLDLFLDR---FADPES 180 (346)
T ss_dssp HHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTT---CHHCCT
T ss_pred HHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHHHH---HHHhcc
Confidence 44444332 100000 001 1112111 2336677788887766543 455555555432 11111
Q ss_pred -CCCcce--eecCccc-----------CccccchHHHHHHHHccC-----CCchhHHHHHHHHHHHHHccC-CC-CCCCC
Q 020907 209 -RCPLMY--EWHGKKY-----------WGAAHGLAGIMHVLMDME-----LKPDEVEDVKGTLRYMIKNRF-PS-GNYPS 267 (320)
Q Consensus 209 -~~~l~~--~w~~~~y-----------lG~aHG~aGIl~~Ll~~~-----~~~~~~~~i~~~l~~l~~~~~-~~-gnwp~ 267 (320)
..+..+ .|....- .-..|-+=- ++.|+++. ..++..+.+.+..++..+... ++ |.+..
T Consensus 181 g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~-~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~ 259 (346)
T PF07221_consen 181 GALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEW-AWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDREGGGLFY 259 (346)
T ss_dssp TEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHH-HHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTTSSB-S
T ss_pred CeeeeeeccccccccccccccccccCccCCchhHHH-HHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecCCCeEEE
Confidence 111111 1221110 111233221 33444443 234556666777777766544 32 32222
Q ss_pred CC---CC-CCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 020907 268 SE---GS-ESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 268 ~~---~~-~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
.. +. ......-|.| +=.+.+++.++++++|++|++.+.+
T Consensus 260 ~~d~~g~~~~~~k~wW~q--~Eal~a~~~~~~~tg~~~~~~~~~~ 302 (346)
T PF07221_consen 260 SVDRDGKPPDRSKRWWPQ--AEALKALLAAYELTGDEKYLDWARR 302 (346)
T ss_dssp EEETTS-BSST-EEHHHH--HHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred EEeCCCCccccCccccHH--HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 21 11 1122456776 3456777889999999999999887
No 39
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=74.49 E-value=80 Score=29.99 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHhhhcCCh-----HHHHHHHHHHHHHHhhcCCCC-Cccc--c-----cC-------chh-HHHHHH
Q 020907 72 LYTGALGTAYLLFKAYQVTKND-----NELKLCCDIVEACDSASRDSG-RVTF--I-----CG-------RAG-VCALGA 130 (320)
Q Consensus 72 ly~G~aGial~~~~l~~~~~~~-----~~l~~a~~~l~~~~~~~~~~~-~~~~--~-----~G-------~aG-i~al~~ 130 (320)
.|.=.+=+++++++.+++++++ +||+.|.++.+.....-.... .-|+ - .+ .-| ...+.+
T Consensus 86 ~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laa 165 (370)
T PF03663_consen 86 YYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAA 165 (370)
T ss_dssp BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHHHHHHH
Confidence 5555555667888999999999 999999999887663211110 0111 1 11 123 344555
Q ss_pred HHHHHhCCHHHHHHHHHHh---hh--cc-C-----------CC-CC--CccccccchHH-HHHHHHHHhHhCCC-cccHH
Q 020907 131 VLAKHAGDERLLDHYLTKF---KE--IK-L-----------PS-DL--PNELLYGRVGF-LWACSFLNKHMGKD-TISTA 188 (320)
Q Consensus 131 ~i~~~~g~~~~~~~~l~~~---~~--~~-~-----------~~-~~--~~dll~G~AG~-l~~ll~l~~~~~~~-~~~~~ 188 (320)
.+++.++++++++.+.+.. .+ +. . .. +. .....+=-.|+ |-++..|++.++++ .+++
T Consensus 166 rL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~- 244 (370)
T PF03663_consen 166 RLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLD- 244 (370)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHH-
T ss_pred HHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHH-
Confidence 6788899988777655443 22 10 0 00 00 00112223344 56888999999765 6654
Q ss_pred HHHHHHHHHHHHhHHhhhcCCCCcceeec---CcccCccccchHHHHHH-HHccC----C-CchhHHHHHHHHHHHH
Q 020907 189 QMRAVVDEIIKAGRRLANRGRCPLMYEWH---GKKYWGAAHGLAGIMHV-LMDME----L-KPDEVEDVKGTLRYMI 256 (320)
Q Consensus 189 ~i~~v~~~ii~~g~~~~~~~~~~l~~~w~---~~~ylG~aHG~aGIl~~-Ll~~~----~-~~~~~~~i~~~l~~l~ 256 (320)
.++++++..++. +.... ..++.+.. .....+=....-||+.- |..+. . .+.+.+.++...+...
T Consensus 245 ~A~~la~~~~~~---~~~~~-~gil~e~~ce~~~~~~~d~~~Fkgi~~r~L~~l~~~~~~~~~~~~~~l~~~a~~a~ 317 (370)
T PF03663_consen 245 RAEKLADAAINH---FFDNG-DGILTEEACEPSGTCDGDQPLFKGIFARYLADLAQVAPDTADTYRDFLRKNADAAW 317 (370)
T ss_dssp HHHHHHHHHHHH---HEETT---EE----------SSSGGGGHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCC-CeeeeccccccCcCcCCccHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHH
Confidence 566666666654 11111 11222210 11123334455677663 33331 1 2356677777777776
No 40
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=69.98 E-value=5.3 Score=34.31 Aligned_cols=52 Identities=19% Similarity=0.147 Sum_probs=31.5
Q ss_pred cCCCCCCCCCCCCC-----CCcccccccCc-hH-HHHHHHHHHhhcCCHHHHHHHHHhh
Q 020907 259 RFPSGNYPSSEGSE-----SDRLVHWCHGA-PG-VTLTLAKAAEVILDEHCHFHCCLIY 310 (320)
Q Consensus 259 ~~~~gnwp~~~~~~-----~~~~~~WCHGa-~G-i~~~l~~a~~~~~d~~yl~~a~~~~ 310 (320)
|.+.|.||-....+ ..-...|=-+. =| .+-++++||++|+|++|+++|++..
T Consensus 1 qd~~g~w~~~~~~~~~~~~~~l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al 59 (189)
T PF06662_consen 1 QDESGGWPYNFDYKLYEGNEVLSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKAL 59 (189)
T ss_pred CCCcCccceeeeeccccCcccCCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHH
Confidence 34567787643211 11234443222 12 3445689999999999999999833
No 41
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=67.24 E-value=8.3 Score=36.69 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCC---C--CCcccccccCchH--H-HHHHHHHHhhcCCHHHHHHHHH
Q 020907 245 VEDVKGTLRYMIKNRFPSGNYPSSEGS---E--SDRLVHWCHGAPG--V-TLTLAKAAEVILDEHCHFHCCL 308 (320)
Q Consensus 245 ~~~i~~~l~~l~~~~~~~gnwp~~~~~---~--~~~~~~WCHGa~G--i-~~~l~~a~~~~~d~~yl~~a~~ 308 (320)
....-.+-+|+.++|.+.|.||-.... + ..-..+| |-+-| - +-.+.+||+.|+|++||.+|-+
T Consensus 379 ~aaFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW-~SAMaQGhaISvL~RAy~h~~De~yL~sAa~ 449 (594)
T KOG3760|consen 379 SAAFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGW-HSAMAQGHAISVLTRAYKHFNDEKYLKSAAK 449 (594)
T ss_pred HHHHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcch-HhhhhcccchHHHHHHHHhcCcHHHHHHHHh
Confidence 445677889999999999999864422 1 1123455 33322 2 3356899999999999999987
No 42
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=63.49 E-value=0.93 Score=34.65 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCCCCCCCCCC
Q 020907 248 VKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 248 i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
|+++++|+++.|.++|.|+...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~ 22 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW 22 (109)
T ss_dssp ----------------------
T ss_pred Cccccccccccccccccccccc
Confidence 5788999999999999997553
No 43
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=54.20 E-value=1.1e+02 Score=31.39 Aligned_cols=100 Identities=12% Similarity=0.160 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHHHhHhC--CCcccHHHHHHHHHHHHHHhHHhhhcCCCCccee-ecCcc-------------------
Q 020907 163 LYGRVGFLWACSFLNKHMG--KDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGKK------------------- 220 (320)
Q Consensus 163 l~G~AG~l~~ll~l~~~~~--~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~-w~~~~------------------- 220 (320)
..=+|-.|.+++.+...-. ++....+.+.+.++.|+..-+. + + .|. |....
T Consensus 373 sD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~--d-G----Gw~~y~~~~~~~~l~~~~~~~~f~~~~~ 445 (634)
T TIGR03463 373 SDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNE--D-G----GFGTYERQRGPRVLELLNPSEMFSTCMT 445 (634)
T ss_pred cccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCC--C-C----CEeccCCCCcHHHHhcCChHHhhccccc
Confidence 3445667777777653211 2234556778888888765321 1 1 122 11000
Q ss_pred cCccccchHHHHHHHHccCC-C-----chhHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 221 YWGAAHGLAGIMHVLMDMEL-K-----PDEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 221 ylG~aHG~aGIl~~Ll~~~~-~-----~~~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
-..-.-..+-++.+|..+.. . .+..+.++++++|+.+.|.++|.|+...
T Consensus 446 d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~W 500 (634)
T TIGR03463 446 DVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSW 500 (634)
T ss_pred CCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccC
Confidence 01123344555555655432 1 2335679999999999999999998654
No 44
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=43.22 E-value=3.9e+02 Score=27.53 Aligned_cols=119 Identities=17% Similarity=0.252 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhccCCCCC------CccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcc
Q 020907 140 RLLDHYLTKFKEIKLPSDL------PNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLM 213 (320)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~------~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~ 213 (320)
+.+++.++-+.+.... +. ....+||++=.+.+|.. .+.+. ..+.+++.++.|++.-+. +.+=..-.
T Consensus 471 ~~i~rav~~L~~~Q~~-dG~W~g~wg~~~~Y~T~~al~aL~~----~g~~~-~~~~i~rAv~wL~~~Q~~--DGGWge~~ 542 (635)
T TIGR01507 471 PVIERAVEYLKREQEP-DGSWFGRWGVNYLYGTGAVLSALKA----VGIDT-REPYIQKALAWLESHQNP--DGGWGEDC 542 (635)
T ss_pred HHHHHHHHHHHHccCC-CCCCccCCCCccccHHHHHHHHHHH----cCCCc-ccHHHHHHHHHHHHhcCC--CCCCCCCC
Confidence 4556666666543211 11 11235555554555532 22222 234788888888875321 11000000
Q ss_pred eeecCcccCccccc-hHHHHHHH---HccCCCchhHHHHHHHHHHHHHccCCCCCCCCC
Q 020907 214 YEWHGKKYWGAAHG-LAGIMHVL---MDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (320)
Q Consensus 214 ~~w~~~~ylG~aHG-~aGIl~~L---l~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~~ 268 (320)
..++++.|.|-..+ .+...++| ...... ..+.|+++++|+.+.|.++|.|+..
T Consensus 543 ~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~ 599 (635)
T TIGR01507 543 RSYEDPAYAGKGASTASQTAWALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEP 599 (635)
T ss_pred cccccccccCCCCCcHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCc
Confidence 11223345443111 23344443 333222 2357999999999988899999754
No 45
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=40.46 E-value=1.1e+02 Score=31.38 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=29.1
Q ss_pred cchHHHHHHHHccCCCchhHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 226 HGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 226 HG~aGIl~~Ll~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
.|.+=.+.+|....... ..+.++++++|+++.|.++|.|....
T Consensus 506 Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg~~~ 548 (634)
T TIGR03463 506 YGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWGEVY 548 (634)
T ss_pred HHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCccCcc
Confidence 35555555555543322 23679999999999999999997543
No 46
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=40.19 E-value=8.6 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHHHHHHccCCCCCCCCC
Q 020907 241 KPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (320)
Q Consensus 241 ~~~~~~~i~~~l~~l~~~~~~~gnwp~~ 268 (320)
.+...+.|+++++|+.+.|.++|.|+..
T Consensus 41 ~~~~~~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 41 DAAVDEAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp TS-SSBSSHHHHHHHHH---TTS--S-T
T ss_pred CCCcHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 3355677999999999999999999855
No 47
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=39.73 E-value=1.2e+02 Score=31.25 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=26.9
Q ss_pred chHHHHHHHHccCCCchhHHHHHHHHHHHHHccCCCCCCCC
Q 020907 227 GLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPS 267 (320)
Q Consensus 227 G~aGIl~~Ll~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~ 267 (320)
|.+=.+.+|..+.......+.++++++|+.+.|.++|.|..
T Consensus 490 gT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge 530 (621)
T TIGR01787 490 GTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGE 530 (621)
T ss_pred hHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCc
Confidence 43333445555433222227899999999999989999953
No 48
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=38.81 E-value=86 Score=31.43 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=49.0
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCCc----------C------CCCCcccccHHHHHHHHHHhhhcCC
Q 020907 29 LTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKR----------V------QDYTLYTGALGTAYLLFKAYQVTKN 92 (320)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~------~~~~ly~G~aGial~~~~l~~~~~~ 92 (320)
+-+|||.+.=+-++.|+++|.+|.+.++..--+..+.. . .+.+.-...+.+.+=|.+|+++|+|
T Consensus 161 LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd 240 (522)
T PTZ00470 161 LGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGD 240 (522)
T ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCC
Confidence 34455554433467899999999999765421111100 0 1111222333444668889999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 020907 93 DNELKLCCDIVEACDS 108 (320)
Q Consensus 93 ~~~l~~a~~~l~~~~~ 108 (320)
++|.+.+.++.+.+.+
T Consensus 241 ~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 241 PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999998888777543
No 49
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=38.76 E-value=3.2e+02 Score=25.16 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=27.6
Q ss_pred chHHHHHHHHccCCCchhHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 227 GLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 227 G~aGIl~~Ll~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
=.+=.+.+|+..... ....++++++|+.+.|.++|.|++..
T Consensus 280 ~Ta~al~aL~~~g~~--~~~~v~~a~~wL~~~Q~~dG~f~~~~ 320 (348)
T cd02889 280 QTAWALLALMAAGEP--DSEAVKRGVKYLLNTQQEDGDWPQEE 320 (348)
T ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCCCCCcCCce
Confidence 334444445444322 34678999999999888999998754
No 50
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=37.11 E-value=3.4e+02 Score=25.01 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=80.8
Q ss_pred CCCcccc-cHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHhhcCCC-CCcccccCchhHHHHHHHHHHHhCCHHHHHHHH
Q 020907 69 DYTLYTG-ALGTAYLLFKAYQVTKNDNELKLCCDIVEACDSASRDS-GRVTFICGRAGVCALGAVLAKHAGDERLLDHYL 146 (320)
Q Consensus 69 ~~~ly~G-~aGial~~~~l~~~~~~~~~l~~a~~~l~~~~~~~~~~-~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l 146 (320)
+.++=+| ++--+.+|.++|+.++|++|.+.+.+-|+-+++..-+. .=+.++-=..| |. .+.+=|.+.....+
T Consensus 33 ~~TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y~-----~~ITfNDdam~~vl 106 (289)
T PF09492_consen 33 NSTIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-YH-----DHITFNDDAMVNVL 106 (289)
T ss_dssp SCE-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-GG-----GSEE-GGGHHHHHH
T ss_pred cCcccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-CC-----CceEEccHHHHHHH
Confidence 4455455 45556788899999999999999999999887654221 11222211111 10 11121223333344
Q ss_pred HHhhhccCCCCCCccccccchHHHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCccee-ecCc------
Q 020907 147 TKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGK------ 219 (320)
Q Consensus 147 ~~~~~~~~~~~~~~dll~G~AG~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~-w~~~------ 219 (320)
..+..+.. ...+++++.. .+.+ + ..+.+.+-++.|++.-.... +..+ .|. =|+.
T Consensus 107 ~lL~~v~~-~~~~~~~v~~---------~~~~-----r-~~~A~~kgi~ciL~tQi~~~--g~~t-~W~qQhD~~Tl~Pa 167 (289)
T PF09492_consen 107 ELLRDVAE-GKGDFAFVDE---------SLRA-----R-ARAAVDKGIDCILKTQIRQN--GKLT-AWCQQHDEVTLQPA 167 (289)
T ss_dssp HHHHHHHC-T-TTSTTS-H---------HHHH-----H-HHHHHHHHHHHHHHHS-EET--TEE-----SEE-TTT-SB-
T ss_pred HHHHHHHh-hcCCccccCH---------HHHH-----H-HHHHHHHHHHHHHHHHcccC--CCCC-chhhccCccccccc
Confidence 44433311 1112222210 0000 0 11255666667776543111 1101 111 1111
Q ss_pred -----ccCcc-ccchHHHHHHHHccCC-CchhHHHHHHHHHHHHHccC
Q 020907 220 -----KYWGA-AHGLAGIMHVLMDMEL-KPDEVEDVKGTLRYMIKNRF 260 (320)
Q Consensus 220 -----~ylG~-aHG~aGIl~~Ll~~~~-~~~~~~~i~~~l~~l~~~~~ 260 (320)
+...+ .+=.+||+.+||.++. .+++.+.|..+++|+.+.+.
T Consensus 168 ~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki 215 (289)
T PF09492_consen 168 WARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKI 215 (289)
T ss_dssp --STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSE
T ss_pred ccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcC
Confidence 12222 3567899999999874 67889999999999975433
No 51
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=35.05 E-value=2e+02 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=20.2
Q ss_pred HHHHHccCCCchhHHHHHHHHHHHHHcc
Q 020907 232 MHVLMDMELKPDEVEDVKGTLRYMIKNR 259 (320)
Q Consensus 232 l~~Ll~~~~~~~~~~~i~~~l~~l~~~~ 259 (320)
+.+|......+++.+.++++++|+.+.|
T Consensus 32 ~~al~~~g~~~~~~~~~~ka~~~l~~~q 59 (348)
T cd02889 32 LQALLEAGLAPEFDPALKKALEWLLKSQ 59 (348)
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHhcC
Confidence 3344444444567789999999999988
No 52
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=33.75 E-value=1.2e+02 Score=31.19 Aligned_cols=43 Identities=9% Similarity=0.178 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHccCCCchhHHHHHHHHHHHHHccCCCCCCCC
Q 020907 225 AHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPS 267 (320)
Q Consensus 225 aHG~aGIl~~Ll~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp~ 267 (320)
..|.+=.+.+|..........+.++++++|+.+.|.++|.|..
T Consensus 504 ~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge 546 (634)
T cd02892 504 IYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGE 546 (634)
T ss_pred HHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCC
Confidence 3355555666666543312346789999999999999998863
No 53
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=33.16 E-value=1.8e+02 Score=27.06 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=64.9
Q ss_pred HHHHHHHHHhHhCCCcccHHHHHHHHHHHHHHhHHhhhcCCCCcceeecC-c----ccCccccchHHHHHHHHcc--CCC
Q 020907 169 FLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHG-K----KYWGAAHGLAGIMHVLMDM--ELK 241 (320)
Q Consensus 169 ~l~~ll~l~~~~~~~~~~~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~-~----~ylG~aHG~aGIl~~Ll~~--~~~ 241 (320)
.++++..++. ++.+.+++ .++..++.+.+.... .....+.+...+ . ..-..+|-.+ +++|..+ ..+
T Consensus 26 ~~~~fa~a~~-~g~~~~l~-~A~~~~~fl~~~~~D---~~~Gg~~~~~~~~~~~~~~~~~Y~~af~--l~ala~~~~tg~ 98 (346)
T PF07221_consen 26 QLYTFARAYR-LGRPEYLE-LAEHGFDFLRKHFRD---PEYGGWYRSLDDGGPLDPQKDLYDQAFA--LLALAEARATGD 98 (346)
T ss_dssp HHHHHHHHHH-TTSHHHHH-HHHHHHHHHHHTTBT---TTTSSBSSEEETTEEEE--EEHHHHHHH--HHHHHHHHCTT-
T ss_pred HHHHHHHHHh-cCchhHHH-HHHHHHHHHHHhccc---CCCCCEEEEeCCCCCCccccchHHHHHH--HHHHHHHHHhCC
Confidence 3555555666 67655443 556666666654421 111122222211 1 1222223222 3333332 236
Q ss_pred chhHHHHHHHHHHHHHccC-CC-CCCCCCCCCCCCcccccccCch-HHHHHHHHHHhhcCCHHHHHHHHHhhh
Q 020907 242 PDEVEDVKGTLRYMIKNRF-PS-GNYPSSEGSESDRLVHWCHGAP-GVTLTLAKAAEVILDEHCHFHCCLIYQ 311 (320)
Q Consensus 242 ~~~~~~i~~~l~~l~~~~~-~~-gnwp~~~~~~~~~~~~WCHGa~-Gi~~~l~~a~~~~~d~~yl~~a~~~~~ 311 (320)
+++.+.++++++++.+... +. |-+...........-. +.+. =.+-+++.++++++|++|++.|.++..
T Consensus 99 ~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~--~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~ 169 (346)
T PF07221_consen 99 PEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRG--QNPHMHLLEAFLALYEATGDPRYLDRAEELLD 169 (346)
T ss_dssp TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEE--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCC--CChhHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6788999999999887533 42 3333221110000100 0010 123456778899999999999998443
No 54
>PLN02171 endoglucanase
Probab=32.63 E-value=4.6e+02 Score=27.04 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHH----HHHHHHHHhhhcCChHHHHHHHHHHH
Q 020907 39 AVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALG----TAYLLFKAYQVTKNDNELKLCCDIVE 104 (320)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aG----ial~~~~l~~~~~~~~~l~~a~~~l~ 104 (320)
++.+++++.|+++-+-..+.........+...+.|.-.+| .+++-..||+.|+|+.|++.+.+..+
T Consensus 198 ~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 198 GYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5678888888887665433211110001123346653333 45666788999999999987766544
No 55
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=32.45 E-value=55 Score=32.06 Aligned_cols=80 Identities=18% Similarity=0.042 Sum_probs=49.0
Q ss_pred hhhhccCCchh--hHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCc--------------ccccHHHHHHHHHHhhhcCC
Q 020907 29 LTKLLSLPYTA--VSDTLKNSALALKQTVVNETWGVSGKRVQDYTL--------------YTGALGTAYLLFKAYQVTKN 92 (320)
Q Consensus 29 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--------------y~G~aGial~~~~l~~~~~~ 92 (320)
+-+|||.+.=. -++.|+++|.++.+.++...-...+.......+ -...+...+=|.+|+++|+|
T Consensus 83 lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd 162 (452)
T PF01532_consen 83 LGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-
T ss_pred hhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhc
Confidence 44566555434 678899999999998755431111110000111 11222234677889999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 020907 93 DNELKLCCDIVEACDS 108 (320)
Q Consensus 93 ~~~l~~a~~~l~~~~~ 108 (320)
++|.+.|..+.+.+.+
T Consensus 163 ~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 163 PKYFDAADRIYDALWR 178 (452)
T ss_dssp THHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999988888765
No 56
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=32.43 E-value=1.2e+02 Score=30.09 Aligned_cols=67 Identities=25% Similarity=0.239 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHhhc--CC----CCCc-ccccCchhHHHHHHHHHHHhCCHHHHHHHH
Q 020907 80 AYLLFKAYQVTKNDNELKLCCDIVEACDSAS--RD----SGRV-TFICGRAGVCALGAVLAKHAGDERLLDHYL 146 (320)
Q Consensus 80 al~~~~l~~~~~~~~~l~~a~~~l~~~~~~~--~~----~~~~-~~~~G~aGi~al~~~i~~~~g~~~~~~~~l 146 (320)
.++++.|++.+++++|++.|..+-+.+++.. ++ .... -.-.-..=+++++++++...|.+..+..++
T Consensus 443 L~allEL~~atq~~~~l~lA~~~g~~l~~~~~~~GlF~~~~~h~y~r~Dd~~PlALL~L~Aa~~gk~~~vp~yl 516 (557)
T PF06917_consen 443 LFALLELYQATQDARYLELADQVGENLFEQHFHRGLFVASPRHRYARLDDPEPLALLALIAALRGKPAQVPPYL 516 (557)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHEETTEE-SSTTBSSEETT-SHHHHHHHHHHHHTT-GGGS----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHccCceecCChhhceeccCChhhHHHHHHHHHhcCChhhcchhh
Confidence 3566788999999999999999888877531 11 0000 001112235777777777667655444333
No 57
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=32.29 E-value=1.6e+02 Score=30.16 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHHHHHccCC-CchhHHHHHHHHHHHHHccCCCCCCCCC
Q 020907 231 IMHVLMDMEL-KPDEVEDVKGTLRYMIKNRFPSGNYPSS 268 (320)
Q Consensus 231 Il~~Ll~~~~-~~~~~~~i~~~l~~l~~~~~~~gnwp~~ 268 (320)
++.+|..+.. .+++.+.|+++++|+.+.|.++|.|...
T Consensus 444 ~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~ 482 (621)
T TIGR01787 444 VIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGR 482 (621)
T ss_pred HHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 3444544432 2345678999999999999999998753
No 58
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=32.02 E-value=5.5e+02 Score=25.99 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=29.2
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHH---hhhhcccc
Q 020907 282 GAPGVTLTLAKAAEVILDEHCHFHCCL---IYQIYCKG 316 (320)
Q Consensus 282 Ga~Gi~~~l~~a~~~~~d~~yl~~a~~---~~~~~c~~ 316 (320)
=.|=++-+..-++++++|++|.+.+.+ ....+|++
T Consensus 528 LrpEviEs~fYlwRlT~d~kyR~wgweavqalek~cr~ 565 (625)
T KOG2204|consen 528 LRPEVIESYFYLWRLTGDQKYRSWGWEAVQALEKYCRV 565 (625)
T ss_pred cCHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHhccc
Confidence 358888999999999999999999887 45567865
No 59
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=30.31 E-value=63 Score=27.74 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=30.9
Q ss_pred CCCCcccccH-HHH-HHHHHHhhhcCChHHHHHHHHHHHHHH
Q 020907 68 QDYTLYTGAL-GTA-YLLFKAYQVTKNDNELKLCCDIVEACD 107 (320)
Q Consensus 68 ~~~~ly~G~a-Gia-l~~~~l~~~~~~~~~l~~a~~~l~~~~ 107 (320)
...+.+++.+ |.+ -+|.+.++.|+|++|++.|.+.++...
T Consensus 22 l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~ 63 (189)
T PF06662_consen 22 LSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFK 63 (189)
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhc
Confidence 5667777754 333 566789999999999999999888754
No 60
>PLN02420 endoglucanase
Probab=30.01 E-value=5.9e+02 Score=25.65 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHH----HHHHHHHHhhhcCChHHHHHHHHHH
Q 020907 39 AVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALG----TAYLLFKAYQVTKNDNELKLCCDIV 103 (320)
Q Consensus 39 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aG----ial~~~~l~~~~~~~~~l~~a~~~l 103 (320)
++.+++++.|+++-+-..+.........+...+.|...+| .++.-..||+.|+|+.|++.+.+..
T Consensus 209 ~YA~~~L~~Ak~ly~fA~~~~g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~~ 277 (525)
T PLN02420 209 HYSHLLLHHAQQLFEFGDKYRGKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDMA 277 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5677888888886665432211111111223456655444 4566678899999999998776543
No 61
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=29.72 E-value=4.2e+02 Score=24.07 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCC
Q 020907 245 VEDVKGTLRYMIKNRFPSGNYPSS 268 (320)
Q Consensus 245 ~~~i~~~l~~l~~~~~~~gnwp~~ 268 (320)
.+.++++++|+++.|.++|.|+..
T Consensus 102 ~~~l~~a~~wL~~~Q~~dG~f~e~ 125 (297)
T cd02896 102 QNVICGSVNWLISNQKPDGSFQEP 125 (297)
T ss_pred HHHHHHHHHHHHhcCCCCCeeCCC
Confidence 568999999999998899999754
No 62
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.82 E-value=2.4e+02 Score=28.16 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=45.6
Q ss_pred HHhhhcCChHHHHHHHHHHHHHHhhcCC-CCCcccccCchhHHHHHHHHHHHhCCHHHHHHHHHHhh
Q 020907 85 KAYQVTKNDNELKLCCDIVEACDSASRD-SGRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFK 150 (320)
Q Consensus 85 ~l~~~~~~~~~l~~a~~~l~~~~~~~~~-~~~~~~~~G~aGi~al~~~i~~~~g~~~~~~~~l~~~~ 150 (320)
..++.|+.+..++.+..+.+.+.....+ ....-.+||-.++-.-++-++..+|++++++.+...+.
T Consensus 142 a~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~ 208 (589)
T COG3533 142 AAHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIH 208 (589)
T ss_pred HHHHhhCcchHHHHHHHHHHhhhhhcCccccccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3467899999888888777766543222 12456789999974333556999999999886654443
No 63
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=28.71 E-value=6.5e+02 Score=25.79 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHHHHHHHH
Q 020907 244 EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEHCHFHCC 307 (320)
Q Consensus 244 ~~~~i~~~l~~l~~~~~~~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~yl~~a~ 307 (320)
+.+.++++++|+.+.|.++|.|....+ +.+++|+.=.+.++..+..-..+....+.+.
T Consensus 474 i~~~i~rAv~~L~~~Q~~DGsW~g~wg------~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~ 531 (634)
T cd02892 474 IDPAIRRAVKYLLREQEPDGSWYGRWG------VCYIYGTWFALEALAAAGEDYENSPYIRKAC 531 (634)
T ss_pred HHHHHHHHHHHHHHccCCCCCccccCC------CccHHHHHHHHHHHHHhCCcccCcHHHHHHH
Confidence 456899999999999989998864332 2344555444455544433223333444443
No 64
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=27.76 E-value=59 Score=29.83 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCchhhhcccccchhhhhhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCCcCCCCCcccccHH
Q 020907 2 ADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGKRVQDYTLYTGALG 78 (320)
Q Consensus 2 ~~r~~~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ly~G~aG 78 (320)
+-||+||||-+-+....+ ...+.....+--. +-.++|++...++++..+..+... + ....++-.|-+|
T Consensus 184 DvRfLpNP~y~~~Lr~lT----G~D~~V~~yv~~~--~~~~~f~~~~~~~l~~~lp~y~~e-g--k~~ltIaiGCTG 251 (284)
T PF03668_consen 184 DVRFLPNPYYVPELRPLT----GLDKPVQDYVLSD--PEAQEFLEKIEDLLDFLLPRYEKE-G--KSYLTIAIGCTG 251 (284)
T ss_pred EcCcCCCCCCChhhhhcC----CCChHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHhc-C--CceEEEEEEcCC
Confidence 569999999665542211 0111111111110 124567777777777766554221 1 223455555554
No 65
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=27.01 E-value=1.3e+02 Score=30.25 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=57.9
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHhhccCCCCC---------------cCCCCCcccccHHHHHHHHHHhhhcCCh
Q 020907 29 LTKLLSLPYTAVSDTLKNSALALKQTVVNETWGVSGK---------------RVQDYTLYTGALGTAYLLFKAYQVTKND 93 (320)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~~~ly~G~aGial~~~~l~~~~~~~ 93 (320)
+..||++|......++++.|.+|-++.-...|...++ ...|+-==+|.+=-|.-+.+|+.+.+.+
T Consensus 583 I~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e 662 (786)
T KOG2244|consen 583 ISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAE 662 (786)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHH
Confidence 6789999988888999999999877754544543221 1233333456666678888999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 020907 94 NELKLCCDIVEACDS 108 (320)
Q Consensus 94 ~~l~~a~~~l~~~~~ 108 (320)
.|++.|..++.....
T Consensus 663 ~yl~ka~~ll~~fse 677 (786)
T KOG2244|consen 663 SYLNKAHRLLAVFSE 677 (786)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988876543
No 66
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=26.40 E-value=2.6e+02 Score=26.39 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHccCCCchhHHHHHHHHHHHHHccCC------------CCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhcCCHH
Q 020907 234 VLMDMELKPDEVEDVKGTLRYMIKNRFP------------SGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVILDEH 301 (320)
Q Consensus 234 ~Ll~~~~~~~~~~~i~~~l~~l~~~~~~------------~gnwp~~~~~~~~~~~~WCHGa~Gi~~~l~~a~~~~~d~~ 301 (320)
+|.++.-.+-+.+.++++++|+-+.+.+ +|.|-... .+.--|.-.----+++||-+++|+.
T Consensus 196 als~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkd-------sgigagidsyyey~lkayillgdds 268 (587)
T KOG2430|consen 196 ALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKD-------SGIGAGIDSYYEYLLKAYILLGDDS 268 (587)
T ss_pred HHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecc-------cCcCcchHHHHHHHHHHhheeccHH
Q ss_pred HHHHHHHhh
Q 020907 302 CHFHCCLIY 310 (320)
Q Consensus 302 yl~~a~~~~ 310 (320)
||++-..-|
T Consensus 269 fldrfn~hy 277 (587)
T KOG2430|consen 269 FLDRFNKHY 277 (587)
T ss_pred HHHHHHHHH
No 67
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=26.12 E-value=34 Score=25.72 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHccCCCCCCC
Q 020907 245 VEDVKGTLRYMIKNRFPSGNYP 266 (320)
Q Consensus 245 ~~~i~~~l~~l~~~~~~~gnwp 266 (320)
.+.++++++|+++.|.++|-|.
T Consensus 91 ~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 91 EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp HTTHCCHHHHHHHTB-TTSSB-
T ss_pred cHHHHHHHHHHHHhcCCCCCCC
Confidence 5678899999999998888874
No 68
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=25.23 E-value=7.7e+02 Score=25.42 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhHHhhhcCCCCcceeecCcccCccccchHHHHHHHHccCCCchhHHHHHHHHHHHHHccCCCCCCC
Q 020907 187 TAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYP 266 (320)
Q Consensus 187 ~~~i~~v~~~ii~~g~~~~~~~~~~l~~~w~~~~ylG~aHG~aGIl~~Ll~~~~~~~~~~~i~~~l~~l~~~~~~~gnwp 266 (320)
+..+++.++.|.+..+. . -.|.+.--.....|.+-.+.+|...... ...+.|+++++|+++.|.++|.|.
T Consensus 470 ~~~i~rav~~L~~~Q~~-----d----G~W~g~wg~~~~Y~T~~al~aL~~~g~~-~~~~~i~rAv~wL~~~Q~~DGGWg 539 (635)
T TIGR01507 470 WPVIERAVEYLKREQEP-----D----GSWFGRWGVNYLYGTGAVLSALKAVGID-TREPYIQKALAWLESHQNPDGGWG 539 (635)
T ss_pred hHHHHHHHHHHHHccCC-----C----CCCccCCCCccccHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhcCCCCCCC
Confidence 44677777777764321 1 1232221122233445555556554332 235689999999999999999996
Q ss_pred C
Q 020907 267 S 267 (320)
Q Consensus 267 ~ 267 (320)
.
T Consensus 540 e 540 (635)
T TIGR01507 540 E 540 (635)
T ss_pred C
Confidence 4
No 69
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=25.00 E-value=5.1e+02 Score=23.30 Aligned_cols=39 Identities=8% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHHHccCC-CchhHHHHHHHHHHHHHccCCCCCCCC
Q 020907 229 AGIMHVLMDMEL-KPDEVEDVKGTLRYMIKNRFPSGNYPS 267 (320)
Q Consensus 229 aGIl~~Ll~~~~-~~~~~~~i~~~l~~l~~~~~~~gnwp~ 267 (320)
+=++.+|.+... .+-....++++++|+++.|.++|.|..
T Consensus 84 a~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~ 123 (292)
T cd02897 84 AFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE 123 (292)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 333444555432 122356899999999998889999974
No 70
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=24.74 E-value=4.1e+02 Score=26.85 Aligned_cols=109 Identities=18% Similarity=0.078 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCc----------CCCCCcccccHHHH---HHHHHHhhhcCChHHHHHHHHHHHHHH
Q 020907 41 SDTLKNSALALKQTVVNETWGVSGKR----------VQDYTLYTGALGTA---YLLFKAYQVTKNDNELKLCCDIVEACD 107 (320)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~ly~G~aGia---l~~~~l~~~~~~~~~l~~a~~~l~~~~ 107 (320)
+..+++.|.++.++.+-..-+..+.. +.+-+=-+=.||++ +=|--|.+.|+|+.|.+.|.+.+++.=
T Consensus 150 ~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~GV~~~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW 229 (622)
T KOG2429|consen 150 DGELLRLAEDLARRLLPAFETPTGIPYGRVNLKYGVDKGETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALW 229 (622)
T ss_pred CchHHHHHHHHHHhhcccccCCCCCCcceeehhcCCCCCCCcceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHH
Confidence 56788889988888654322221110 00111122334554 445567788999999999999998753
Q ss_pred hh-c-C----------CCCCcccccCc-hhHHHHHHHH---HHHhCCHHHHHHHHHHh
Q 020907 108 SA-S-R----------DSGRVTFICGR-AGVCALGAVL---AKHAGDERLLDHYLTKF 149 (320)
Q Consensus 108 ~~-~-~----------~~~~~~~~~G~-aGi~al~~~i---~~~~g~~~~~~~~l~~~ 149 (320)
+. . . ..+-..-.+|. |||=.+...+ +-.+||+++++.+-+..
T Consensus 230 ~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf~ea~ 287 (622)
T KOG2429|consen 230 SLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMFNEAY 287 (622)
T ss_pred hhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHHHHHH
Confidence 21 1 0 11123334444 4553333222 33479998877554444
No 71
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=24.14 E-value=1e+02 Score=31.87 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=30.6
Q ss_pred HHHHHHHHccCC------CchhHHHHHHHHHHHHHccCCCCCCCCCC
Q 020907 229 AGIMHVLMDMEL------KPDEVEDVKGTLRYMIKNRFPSGNYPSSE 269 (320)
Q Consensus 229 aGIl~~Ll~~~~------~~~~~~~i~~~l~~l~~~~~~~gnwp~~~ 269 (320)
+..+.+|.++.. ..+....|+++++|+.+.|.++|+|+.+.
T Consensus 566 ~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsW 612 (760)
T KOG0497|consen 566 SSAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSW 612 (760)
T ss_pred HHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchh
Confidence 445666666632 23456789999999999999999998655
No 72
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=22.28 E-value=71 Score=29.33 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCchhhhcccccchhhhhhhhccCCchhhHHHHHHHHHHHHHHHHhhc
Q 020907 2 ADRFFPNEMPETSLAVAAHETTTAQDSLTKLLSLPYTAVSDTLKNSALALKQTVVNET 59 (320)
Q Consensus 2 ~~r~~~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 59 (320)
+-||+||||-+-+....+ ...+.+...+--. +-.++|++....+++..+..+
T Consensus 187 DvR~lpNP~~~~~lr~~t----G~d~~v~~~v~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (288)
T PRK05416 187 DVRFLPNPHYDPELRPLT----GLDKPVADYVLAQ--PEVEEFLDKIRDLLEFWLPGY 238 (288)
T ss_pred EeCcCCCCCCChhhccCC----CCCHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHH
Confidence 469999999555432111 0111111111000 125567777777777665554
Done!