BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020908
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9PD85|Y1494_XYLFA UPF0162 protein XF_1494 OS=Xylella fastidiosa (strain 9a5c)
GN=XF_1494 PE=3 SV=2
Length = 281
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 59/216 (27%)
Query: 131 YSSGFRSSPESV------LESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSA 184
Y RS E + + ++ RYLF K G+ + ++ +PR+ YL+ V R G+
Sbjct: 50 YVEYLRSEVEEISLWPLKMAAVNRYLFQKLGY--SGNHDEYYDPRNSYLNQVFERRLGNP 107
Query: 185 VMLSLIYSEILKMLRIWGLIDFDVEISFP---------------LDLYSLPRGYQKQKSK 229
+ L++I E+ + L I D +SFP +D ++ R ++ +
Sbjct: 108 ISLAVIQIEVARRLG----IPLD-GVSFPGHFLVRLPVDDGILVMDPFNGGRPLDAEELR 162
Query: 230 DSDQPHI--------ITVQML--------LEEILRNLKNAFWPFQHDRSRSLFLRAARAA 273
+ +PH+ Q+L L ILRNL + + + + + RAAR A
Sbjct: 163 ERVRPHLGGEVPDDRALAQILNPAPHRTILVRILRNLHSVY------ANTNRWDRAARCA 216
Query: 274 NCIDQL---------NSGDSGLQLASAKAARHRLER 300
+ I +L + G + LQL AR+ L R
Sbjct: 217 DRILKLVPNQPEALRDRGLAYLQLGHRSGARNDLTR 252
>sp|Q8VDH1|FBX21_MOUSE F-box only protein 21 OS=Mus musculus GN=Fbxo21 PE=2 SV=1
Length = 627
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 141 SVLESIERYLFDKKGFR--RTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198
VL++I L+D+ F+ R + N L +LY+H VLT RTG + +SL+Y + + L
Sbjct: 260 QVLDAINYVLYDQLKFKGNRMDYYNAL----NLYMHQVLTRRTGIPISMSLLYLTVARQL 315
Query: 199 RI 200
+
Sbjct: 316 GV 317
>sp|Q87DH6|Y709_XYLFT UPF0162 protein PD_0709 OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=PD_0709 PE=3 SV=1
Length = 281
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 20/96 (20%)
Query: 131 YSSGFRSSPESV------LESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSA 184
Y RS E + + ++ RYLF K G+ + ++ +PR+ YL+ V R G+
Sbjct: 50 YVEYLRSEVEEISLWPLKMAAVNRYLFQKLGY--SGNHDEYYDPRNSYLNQVFERRLGNP 107
Query: 185 VMLSLIYSEILKMLRIWGLIDFDVEISFPLDLYSLP 220
+ L++I E+ + L I PLD S P
Sbjct: 108 ISLAVIQIEVARRLGI------------PLDGVSFP 131
>sp|A1AV54|BIOD_RUTMC ATP-dependent dethiobiotin synthetase BioD OS=Ruthia magnifica
subsp. Calyptogena magnifica GN=bioD PE=3 SV=1
Length = 213
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 5 LYAAFCLPSSPYLSKFSRYRVTCCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAREG 64
L + C + P + K RY++ CS +Q S LKL L D++D+ +D E G
Sbjct: 56 LLSKACNINEP-IDKVCRYKLESCSSAQMASQDSGLKLTLDDLVDACMSDEFVIVEGTGG 114
Query: 65 FYSQIKR 71
S I R
Sbjct: 115 LLSPIAR 121
>sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2
Length = 628
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 141 SVLESIERYLFDKKGFR--RTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198
VL+++ L+D+ F+ R + N L +LY+H VL RTG + +SL+Y I + L
Sbjct: 260 QVLDAMNYVLYDQLKFKGNRMDYYNAL----NLYMHQVLIRRTGIPISMSLLYLTIARQL 315
Query: 199 RI 200
+
Sbjct: 316 GV 317
>sp|Q5R5S1|FBX21_PONAB F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1
Length = 621
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 141 SVLESIERYLFDKKGFR--RTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198
VL+++ L+D+ F+ R + N L +LY+H VL RTG + +SL+Y I + L
Sbjct: 260 QVLDAMNYVLYDQLKFQGNRMDYYNAL----NLYMHQVLIRRTGIPISMSLLYLTIARQL 315
Query: 199 RI 200
+
Sbjct: 316 GV 317
>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
Length = 1975
Score = 31.6 bits (70), Expect = 8.0, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 36 VASDLKLALHDVLDSIGTD--TTFAREARE-GFYSQIKRLSNVERETSISINKCVDLGKT 92
+A D +A H+ L+ GTD T +E +E Y Q K + R +S+NK +D
Sbjct: 901 IALDPDVANHNALEFAGTDDITAIDKEGKELPHYDQFKEYFKISRNGKVSVNKQLDRN-- 958
Query: 93 ALHIAAEDDSLISHSSVP 110
L + L++ S+ P
Sbjct: 959 -LFAVMRINVLVTDSTAP 975
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,983,046
Number of Sequences: 539616
Number of extensions: 4206742
Number of successful extensions: 9760
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9756
Number of HSP's gapped (non-prelim): 7
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)