Query 020908
Match_columns 320
No_of_seqs 179 out of 410
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10941 hypothetical protein; 100.0 9E-45 2E-49 342.1 15.7 212 83-311 8-251 (269)
2 COG2912 Uncharacterized conser 100.0 4.7E-34 1E-38 267.7 12.1 212 86-311 12-251 (269)
3 PF13369 Transglut_core2: Tran 99.9 3.5E-26 7.5E-31 198.5 8.3 131 114-248 1-152 (152)
4 PF01841 Transglut_core: Trans 91.3 0.031 6.7E-07 44.6 -1.6 62 135-201 10-71 (113)
5 PF13371 TPR_9: Tetratricopept 90.0 0.29 6.3E-06 35.8 2.8 64 250-316 1-70 (73)
6 smart00460 TGc Transglutaminas 75.6 2 4.3E-05 31.1 1.9 26 176-201 1-26 (68)
7 COG1305 Transglutaminase-like 58.3 47 0.001 30.5 7.7 73 118-201 142-214 (319)
8 PF12418 AcylCoA_DH_N: Acyl-Co 32.0 29 0.00063 22.8 1.3 16 36-51 6-21 (34)
9 PF13428 TPR_14: Tetratricopep 30.2 55 0.0012 21.8 2.6 35 283-317 9-43 (44)
10 PF04405 ScdA_N: Domain of Unk 27.4 46 0.001 24.4 1.9 35 18-62 17-52 (56)
11 COG2345 Predicted transcriptio 27.1 3.8E+02 0.0083 25.1 8.3 142 45-201 29-193 (218)
12 KOG0543 FKBP-type peptidyl-pro 25.7 1.6E+02 0.0034 30.1 5.8 78 238-318 251-334 (397)
13 PF10787 YfmQ: Uncharacterised 25.5 35 0.00076 30.0 1.1 45 137-183 57-103 (149)
14 PRK04758 hypothetical protein; 25.3 4.5E+02 0.0097 23.8 8.2 66 40-105 41-108 (181)
15 COG5502 Uncharacterized conser 25.3 4.6E+02 0.01 22.9 8.0 95 37-150 6-108 (135)
No 1
>PRK10941 hypothetical protein; Provisional
Probab=100.00 E-value=9e-45 Score=342.12 Aligned_cols=212 Identities=18% Similarity=0.104 Sum_probs=191.7
Q ss_pred cCCCCcHHHHHHHHhhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCC
Q 020908 83 INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR 162 (320)
Q Consensus 83 ~d~~~dL~eaAL~IA~e~~P~~s~s~v~l~v~~~~~~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~ 162 (320)
++++++|.+||++||++.+| ++|++++..+||+|+.+++. .++...++.+++++||++||++|||+||+.
T Consensus 8 ~~~~~~L~e~al~ia~~~~p-------dl~~~~~~~~L~~l~~~~~~--~l~~~~~~~~~l~~L~~~fy~~lgF~Gn~~- 77 (269)
T PRK10941 8 EFNKAPLCEGMILASQAIRR-------DFPSQDVYDELERLVSLARE--EISQLLPQDEQLEKLIALFYGEWGFGGASG- 77 (269)
T ss_pred cccCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHH--hccccCCHHHHHHHHHHHHHHHhCCCCCcc-
Confidence 47899999999999999999 99999999999999999999 678888999999999999999999999999
Q ss_pred CCcCCCccccHHHHHhcCcCchHHHHHHHHHHHHHcCCC--cc--C-----------------C-CCceeeccccccccc
Q 020908 163 NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--I-----------------D-FDVEISFPLDLYSLP 220 (320)
Q Consensus 163 ~~Y~dp~Ns~L~~VLerR~GiPIsLsIIYleVArRLGlp--GV--~-----------------d-f~G~il~~~d~~~l~ 220 (320)
+||+|+|||||+||++|+|+|||||+||++||+|+|+| || | | |+|+++++++|+.|.
T Consensus 78 -~Y~~p~ns~L~~VL~~R~G~PisL~il~l~iA~~lglp~~gV~fPghfllr~~~~d~~~~~IDPf~G~~L~~~~l~~~L 156 (269)
T PRK10941 78 -VYRLSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWL 156 (269)
T ss_pred -ccCCchhhHHHHHHHccCCCcHHHHHHHHHHHHHcCCCeeeeecCchheeeeecCCCceEEEeCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999 87 2 1 368999999999998
Q ss_pred cccccCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhcccCCCchhhhHhhhhh---------HHhhhhccCCchhhHhhhh
Q 020908 221 RGYQKQKSKD-SDQPHIITVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAAR---------AANCIDQLNSGDSGLQLAS 290 (320)
Q Consensus 221 rg~~~~~~~~-~~~l~~~s~r~IL~RmL~NLk~~y~~~~~~~s~~l~L~~~~---------~a~~~dr~~~~~~~~~~~~ 290 (320)
++..++..+. +.++.+++|++||.||++|||.+|+++++ .+.+|++++ ....+||+. .++||+|
T Consensus 157 ~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~~---~~~AL~~~e~ll~l~P~dp~e~RDRGl---l~~qL~c 230 (269)
T PRK10941 157 KGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQ---MELALRASEALLQFDPEDPYEIRDRGL---IYAQLDC 230 (269)
T ss_pred HhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcCc---HHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCC
Confidence 8777665433 34789999999999999999999999999 555555554 556889988 9999999
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 020908 291 AKAARHRLERGVWNSVRFGDM 311 (320)
Q Consensus 291 ~~~a~~~l~~~~~~~~~~g~~ 311 (320)
.+.|..|||.+|..||+..|.
T Consensus 231 ~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 231 EHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred cHHHHHHHHHHHHhCCCchhH
Confidence 999999999999999998875
No 2
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.7e-34 Score=267.66 Aligned_cols=212 Identities=23% Similarity=0.185 Sum_probs=185.8
Q ss_pred CCcHHHHHHHHhhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCc
Q 020908 86 CVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL 165 (320)
Q Consensus 86 ~~dL~eaAL~IA~e~~P~~s~s~v~l~v~~~~~~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~~~Y 165 (320)
...+.++++++++..+| ++|++.+..+++.++..++. .++....+++++++++++||++|||+||.+ .|
T Consensus 12 ~~~~~e~~l~~a~~~~~-------~~dp~~~~~~l~~lV~~a~~--~i~~~~~~~~~~~~l~~~fy~d~gF~~~~~--~y 80 (269)
T COG2912 12 EAPLKEGALLAAQAIRP-------DLDPARLLNELDRLVRLARK--RISELLPQEEQLEALLRLFYGDWGFSGDEE--DY 80 (269)
T ss_pred hccchhHHHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHH--HhhhccChhhHHHHHHHHHHHHcCCCCCcc--cc
Confidence 45567779999999999 99999999999999999988 677778889999999999999999999999 99
Q ss_pred CCCccccHHHHHhcCcCchHHHHHHHHHHHHHcCCC--cc--CC-----------------CCceeeccccccccccccc
Q 020908 166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--ID-----------------FDVEISFPLDLYSLPRGYQ 224 (320)
Q Consensus 166 ~dp~Ns~L~~VLerR~GiPIsLsIIYleVArRLGlp--GV--~d-----------------f~G~il~~~d~~~l~rg~~ 224 (320)
|+|+|+|+++|+++|+|+|||||+||+++|+++|+| || |+ |+|++++.++|+.+..+..
T Consensus 81 ~~~~n~~l~~Vl~~R~G~pvsLa~vll~ia~~l~lpl~gV~FP~~flLR~~~~~~~~~idP~ng~~l~~~~l~~~l~~~~ 160 (269)
T COG2912 81 FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGVNFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGTI 160 (269)
T ss_pred cCchhhhHHHHHHHcCCCcchHHHHHHHHHHHcCCCCCccCCccceeEeeccCCCceeeCCCCCCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 87 21 3577888999999988877
Q ss_pred cCCCCCC-CCCCCCCHHHHHHHHHHHHHHHhcccCCCch------hhhHhhhhhHHhhhhccCCchhhHhhhhHHHHHHH
Q 020908 225 KQKSKDS-DQPHIITVQMLLEEILRNLKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKAARHR 297 (320)
Q Consensus 225 ~~~~~~~-~~l~~~s~r~IL~RmL~NLk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~a~~~ 297 (320)
++.++.- ..+..+++++|+.||++|||++|.+++++.. +.+-|.|.++....||+. .|+||+|.+.|..|
T Consensus 161 ~~~ael~~~~L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGl---iY~ql~c~~vAl~d 237 (269)
T COG2912 161 GPSAELLPEDLKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGL---IYAQLGCYHVALED 237 (269)
T ss_pred CcHhhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHH---HHHhcCCchhhHHH
Confidence 7754443 3567899999999999999999999999443 344444555666788888 99999999999999
Q ss_pred HHhhhhccCCcchh
Q 020908 298 LERGVWNSVRFGDM 311 (320)
Q Consensus 298 l~~~~~~~~~~g~~ 311 (320)
|++++..+|+.++-
T Consensus 238 l~~~~~~~P~~~~a 251 (269)
T COG2912 238 LSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHhCCCchHH
Confidence 99999999998864
No 3
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=99.93 E-value=3.5e-26 Score=198.50 Aligned_cols=131 Identities=23% Similarity=0.364 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcCcCchHHHHHHHHH
Q 020908 114 DALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSE 193 (320)
Q Consensus 114 ~~~~~~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~~~Y~dp~Ns~L~~VLerR~GiPIsLsIIYle 193 (320)
+++.++||+|+.++++ .++...+|.+++++|+++||+++||+|+.. +|++|+|++|++||++|+|+||+||+||++
T Consensus 1 ~~~~~~Ld~la~~v~~--~~~~~~~~~~~l~al~~~l~~~~gF~~~~~--~y~~~~n~~l~~vL~~r~G~Pi~L~ily~~ 76 (152)
T PF13369_consen 1 EAVLQRLDALAAQVRQ--RLPARASPREKLEALNDVLYQELGFSGNSE--NYYDPENSFLHKVLERRRGIPISLAILYLE 76 (152)
T ss_pred ChHHHHHHHHHHHHHH--HccccCCHHHHHHHHHHHHHHHcCCCCCcc--ccCChHhhhHHHHHhcCCCCcHHHHHHHHH
Confidence 3678999999999999 577778999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCC--cc--C--------C--------C-CceeeccccccccccccccCCCCCCCCCCCCCHHHHHHHHHH
Q 020908 194 ILKMLRIW--GL--I--------D--------F-DVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILR 248 (320)
Q Consensus 194 VArRLGlp--GV--~--------d--------f-~G~il~~~d~~~l~rg~~~~~~~~~~~l~~~s~r~IL~RmL~ 248 (320)
||+|+|++ || | + | +|++++.++|+.+..+..++......++.++++++||.||+|
T Consensus 77 va~rlGl~~~~v~~Pgh~l~r~~~~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~~~~~~~~l~p~s~~eil~R~l~ 152 (152)
T PF13369_consen 77 VARRLGLPAEPVNFPGHFLVRVRSDGEFYIDPFNGGRLLSREELERLLSRMGGPAELDPEYLKPASPREILLRMLR 152 (152)
T ss_pred HHHHcCCeEEEEecCCEEEEEEecCCcEEEccCCCCccCCHHHHHHHHHhccCcccCCHHHhCCCCHHHHHHHHhC
Confidence 99999999 65 2 1 2 388888888887776665441112346889999999999985
No 4
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=91.30 E-value=0.031 Score=44.60 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcCcCchHHHHHHHHHHHHHcCCC
Q 020908 135 FRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (320)
Q Consensus 135 ~~~~p~~~l~~Ln~vLf~elGF~Gn~~~~~Y~dp~Ns~L~~VLerR~GiPIsLsIIYleVArRLGlp 201 (320)
...++.+++++|..++-+...|. + .+..+.......||.++.|.+...+.++..++|.+|||
T Consensus 10 ~~~~~~~~~~~i~~~v~~~~~y~-~----~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gip 71 (113)
T PF01841_consen 10 NSKTPLEKAKAIYDWVRSNIRYD-D----PNYSPGPRDASEVLRSGRGDCEDYASLFVALLRALGIP 71 (113)
T ss_dssp TSHCHHCCCCCCCCCCCCCCCEC------TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHhCcEEe-C----CCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCc
Confidence 45666677777777776666666 1 23344455589999999999999999999999999999
No 5
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.03 E-value=0.29 Score=35.84 Aligned_cols=64 Identities=23% Similarity=0.169 Sum_probs=48.6
Q ss_pred HHHHhcccCCCch------hhhHhhhhhHHhhhhccCCchhhHhhhhHHHHHHHHHhhhhccCCcchhHhhhh
Q 020908 250 LKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALA 316 (320)
Q Consensus 250 Lk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~~~~~~~ 316 (320)
|+.+|++.++.+. +.+.+.|.+......++. .+.+++....|...|++.+-.+|+..+.+...+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~---~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRAR---CLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHH---HHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 5778888777443 344445555556666665 899999999999999999999999888876654
No 6
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=75.55 E-value=2 Score=31.12 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHhcCcCchHHHHHHHHHHHHHcCCC
Q 020908 176 VLTHRTGSAVMLSLIYSEILKMLRIW 201 (320)
Q Consensus 176 VLerR~GiPIsLsIIYleVArRLGlp 201 (320)
||++|.|.+-..+.++..++|.+|+|
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr~~GIp 26 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLRSLGIP 26 (68)
T ss_pred CCcccceeeHHHHHHHHHHHHHCCCC
Confidence 68899999999999999999999999
No 7
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=58.26 E-value=47 Score=30.49 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcCcCchHHHHHHHHHHHHH
Q 020908 118 SQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKM 197 (320)
Q Consensus 118 ~~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~~~Y~dp~Ns~L~~VLerR~GiPIsLsIIYleVArR 197 (320)
..+..++.+. ......+.+++..+..+++...-|.... .+...--..+|+.++|.|-=.+.+++.++|.
T Consensus 142 ~~~~~la~~~-----~~~~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~~~~~~~l~~~~G~C~d~a~l~val~Ra 210 (319)
T COG1305 142 PRVAELAARE-----TGGATTPREKAAALFDYVNSKIRYSPGP------TPVTGSASDALRLGRGVCRDFAHLLVALLRA 210 (319)
T ss_pred HHHHHHHHHh-----hcccCCHHHHHHHHHHHHhhcceeecCC------CCCCCCHHHHHHhCCcccccHHHHHHHHHHH
Confidence 3455555553 2245677888999999888655554332 2233344679999999999999999999999
Q ss_pred cCCC
Q 020908 198 LRIW 201 (320)
Q Consensus 198 LGlp 201 (320)
+|||
T Consensus 211 ~GIp 214 (319)
T COG1305 211 AGIP 214 (319)
T ss_pred cCCc
Confidence 9999
No 8
>PF12418 AcylCoA_DH_N: Acyl-CoA dehydrogenase N terminal ; InterPro: IPR020953 This entry represents the N-terminal domain of Acyl-CoA dehydrogenase, which is one of the enzymes involved in AcylCoA interaction in beta-oxidation []. The protein is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM.
Probab=31.97 E-value=29 Score=22.77 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.1
Q ss_pred cchhhHHHHHHhhhhc
Q 020908 36 VASDLKLALHDVLDSI 51 (320)
Q Consensus 36 ~~~~~~~~l~~~~~~~ 51 (320)
-..|++|+||+.|+.-
T Consensus 6 p~rD~~F~L~Evl~~~ 21 (34)
T PF12418_consen 6 PLRDMRFVLYEVLDAD 21 (34)
T ss_pred cHHHHHHHHHHHHCcH
Confidence 4579999999998743
No 9
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=30.16 E-value=55 Score=21.79 Aligned_cols=35 Identities=20% Similarity=0.059 Sum_probs=31.0
Q ss_pred hhhHhhhhHHHHHHHHHhhhhccCCcchhHhhhhc
Q 020908 283 DSGLQLASAKAARHRLERGVWNSVRFGDMRCALAG 317 (320)
Q Consensus 283 ~~~~~~~~~~~a~~~l~~~~~~~~~~g~~~~~~~~ 317 (320)
..+.+++....|..-+++.|-..|+..+.+..|+-
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 36788888999999999999999999999998874
No 10
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=27.42 E-value=46 Score=24.43 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=26.6
Q ss_pred CcCcceeEE-eecCCCCcccchhhHHHHHHhhhhcccccHHHHHHH
Q 020908 18 SKFSRYRVT-CCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAR 62 (320)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ar 62 (320)
.-|.+|++= |+||+.+ |.+|....|+|....-+..
T Consensus 17 ~vf~~~gIDfCCgG~~~----------L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 17 RVFRKYGIDFCCGGNRS----------LEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred HHHHHcCCcccCCCCch----------HHHHHHHcCCCHHHHHHHH
Confidence 446677775 9999866 8888999999987765544
No 11
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=27.07 E-value=3.8e+02 Score=25.09 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=87.2
Q ss_pred HHhhhhcccccHHHHHHHHHHHHHH-----------hhhh----hhhhhcccccCCCCcHHHHHHHHhhhhCCCCCCCCC
Q 020908 45 HDVLDSIGTDTTFAREAREGFYSQI-----------KRLS----NVERETSISINKCVDLGKTALHIAAEDDSLISHSSV 109 (320)
Q Consensus 45 ~~~~~~~~~~~~~~~~ar~~f~~~l-----------~~~~----~~~~~~~~~~d~~~dL~eaAL~IA~e~~P~~s~s~v 109 (320)
.|+=+..||++..+++=.+.+..+= .|+. .-++.....|++..+|+.+++..-.+..-
T Consensus 29 ~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~~y~~l~~~~l~~l~~~~G------- 101 (218)
T COG2345 29 DELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKRYGELALALLDALEETGG------- 101 (218)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcchhhHHHHHHHHHHHHHhcc-------
Confidence 3455678888888877666544321 1111 12233334577777887777766666554
Q ss_pred CCCHHHHH----HHHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCC---CCcCCCccccHHHHHhcCcC
Q 020908 110 PLPVDALI----SQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR---NQLIEPRSLYLHSVLTHRTG 182 (320)
Q Consensus 110 ~l~v~~~~----~~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~---~~Y~dp~Ns~L~~VLerR~G 182 (320)
.+.+. .+-+++..+.+. .+....+.+++++.|-.++ .++||-+.... ..|--.++.+-...+.++
T Consensus 102 ---~~~l~~~l~~r~~~~~~~~~~--~~~~~~~~ee~~e~Lv~l~-~~~gy~~e~~~~~~~~~~l~e~nCPi~~vA~~-- 173 (218)
T COG2345 102 ---EEALNAFLEKRAQAIGAQYRP--AMGGDADLEEKVERLVELL-SDLGYMPELRPVDNGRVQLIEHNCPISAVAEE-- 173 (218)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHH-HhCCccccccccCCCceEEEecCCchHHHHHH--
Confidence 12222 233444444444 3444688899999999988 56788765221 134445566777777777
Q ss_pred chHHHHHHHHHHHHHcC-CC
Q 020908 183 SAVMLSLIYSEILKMLR-IW 201 (320)
Q Consensus 183 iPIsLsIIYleVArRLG-lp 201 (320)
.|+....---.+..-|| .+
T Consensus 174 ~~~~C~~e~~~~~~~Lg~~~ 193 (218)
T COG2345 174 FPVACESELALFAEVLGTAH 193 (218)
T ss_pred hHHHHHHHHHHHHHHhccCC
Confidence 88888888888888888 44
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=1.6e+02 Score=30.13 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcchh
Q 020908 238 TVQMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFGDM 311 (320)
Q Consensus 238 s~r~IL~RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~~ 311 (320)
...++..-...||..+|.+.++ ..-++..++-++-.|..| -|.++.+++.-.-|+.++...+-.-|.--++
T Consensus 251 ~~~~~k~~~~lNlA~c~lKl~~---~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 251 KAEALKLACHLNLAACYLKLKE---YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred HHHHHHHHHhhHHHHHHHhhhh---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence 4556777888999999999888 668888888888777777 4668888999999999999999999999999
Q ss_pred Hhhhhcc
Q 020908 312 RCALAGM 318 (320)
Q Consensus 312 ~~~~~~~ 318 (320)
+..|+.|
T Consensus 328 ~~el~~l 334 (397)
T KOG0543|consen 328 RAELIKL 334 (397)
T ss_pred HHHHHHH
Confidence 9888876
No 13
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=25.51 E-value=35 Score=30.01 Aligned_cols=45 Identities=11% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhhh-hcCC-CCCCCCCCcCCCccccHHHHHhcCcCc
Q 020908 137 SSPESVLESIERYLFD-KKGF-RRTNARNQLIEPRSLYLHSVLTHRTGS 183 (320)
Q Consensus 137 ~~p~~~l~~Ln~vLf~-elGF-~Gn~~~~~Y~dp~Ns~L~~VLerR~Gi 183 (320)
.+-.+.++.+|+-+|- ++.| .|+.+ -|..|+|+.-+-|+++++|-
T Consensus 57 e~K~~~I~~FNeAiFLekyY~~P~~e~--~~l~pe~~gtPlvI~tKkGK 103 (149)
T PF10787_consen 57 EDKSQIIDQFNEAIFLEKYYIPPGNEE--RYLHPENSGTPLVIDTKKGK 103 (149)
T ss_pred hHHHHHHHHHhHHHHHHhhccCCCCcc--cccCcccCCCCEEEEeccCc
Confidence 3445788888886664 4444 46766 79999999999999998884
No 14
>PRK04758 hypothetical protein; Validated
Probab=25.33 E-value=4.5e+02 Score=23.80 Aligned_cols=66 Identities=9% Similarity=-0.043 Sum_probs=44.2
Q ss_pred hHHHHHHhhhhcccccHHHHHHHHHHHHHHhhh-hhhh-hhcccccCCCCcHHHHHHHHhhhhCCCCC
Q 020908 40 LKLALHDVLDSIGTDTTFAREAREGFYSQIKRL-SNVE-RETSISINKCVDLGKTALHIAAEDDSLIS 105 (320)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~ar~~f~~~l~~~-~~~~-~~~~~~~d~~~dL~eaAL~IA~e~~P~~s 105 (320)
-+.|+..+++.-|...+..+.....+.+..... +..+ ...-++|++..+|.+=|-.++.|.+.++.
T Consensus 41 ~~~W~~~~~~~~~~~~~~~~~~l~~ly~~t~~~L~d~~~~f~lLLPdD~~~L~~Ra~AL~~W~~gFL~ 108 (181)
T PRK04758 41 GADWLARILADAGQVAPAQGSALDQLRQATVAQLEDRDFAFELLLAEDGAPLAARADALFDWCRAFLG 108 (181)
T ss_pred cHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhccCCCeeeeeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999988866655555555666665555532 1111 12234699999999999999999887654
No 15
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=25.27 E-value=4.6e+02 Score=22.88 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=51.2
Q ss_pred chhhHHHHHHhhhhcccccHH-HHHHHHHHHHHHhhhhhhhhhcccccCCC-------CcHHHHHHHHhhhhCCCCCCCC
Q 020908 37 ASDLKLALHDVLDSIGTDTTF-AREAREGFYSQIKRLSNVERETSISINKC-------VDLGKTALHIAAEDDSLISHSS 108 (320)
Q Consensus 37 ~~~~~~~l~~~~~~~~~~~~~-~~~ar~~f~~~l~~~~~~~~~~~~~~d~~-------~dL~eaAL~IA~e~~P~~s~s~ 108 (320)
.-+.-.|+|++.+.+|+.+.+ ++..-+.-.+-++. ++|.+. .+..-++++...++.+
T Consensus 6 ~~~~~~fi~ev~~~a~l~s~~~A~~~~~avL~tlRd---------rL~~eea~~~aaqLP~~ir~~~~~~p~~~------ 70 (135)
T COG5502 6 SQQFDEFIGEVQAEAGLQSRNDAYRITRAVLRTLRD---------RLPGEEAADFAAQLPMEIRDILVDGPDLG------ 70 (135)
T ss_pred HHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---------HcChhHHHHHHHhCCHHHHHHHhcCCcCC------
Confidence 345678999999999965554 44444444444442 222222 2233333444432222
Q ss_pred CCCCHHHHHHHHHHHHHHHhchhCCCCCCCHHHHHHHHHHHh
Q 020908 109 VPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYL 150 (320)
Q Consensus 109 v~l~v~~~~~~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vL 150 (320)
.......+|+.-.+|..........+++..+++.-.+|
T Consensus 71 ----~~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL 108 (135)
T COG5502 71 ----PPKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVL 108 (135)
T ss_pred ----CCCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence 22233455555555655445667778887776666555
Done!