Query 020908
Match_columns 320
No_of_seqs 179 out of 410
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3isr_A Transglutaminase-like e 89.5 0.72 2.5E-05 43.1 7.1 72 119-201 127-198 (293)
2 3kd4_A Putative protease; stru 89.4 0.9 3.1E-05 45.3 8.2 76 119-201 229-304 (506)
3 2f4m_A Peptide N-glycanase; gl 50.3 90 0.0031 29.1 9.8 29 173-201 132-160 (295)
4 3rkv_A Putative peptidylprolyl 47.9 21 0.00073 27.8 4.5 74 242-318 61-141 (162)
5 4gco_A Protein STI-1; structur 46.4 30 0.001 26.4 5.1 71 245-318 48-124 (126)
6 3h3g_B Parathyroid hormone-rel 36.0 16 0.00056 21.7 1.4 11 41-51 10-20 (24)
7 3sz7_A HSC70 cochaperone (SGT) 35.9 46 0.0016 25.8 4.8 71 245-318 46-124 (164)
8 2fbn_A 70 kDa peptidylprolyl i 34.1 80 0.0027 25.3 6.1 76 240-318 84-165 (198)
9 1x3z_A Peptide: N-glycanase; h 27.5 34 0.0011 32.7 2.9 34 168-201 168-201 (335)
10 2q2k_A Hypothetical protein; p 24.4 30 0.001 24.8 1.4 25 46-70 41-67 (70)
11 3upv_A Heat shock protein STI1 24.1 94 0.0032 22.6 4.4 71 245-318 39-121 (126)
12 1p5q_A FKBP52, FK506-binding p 23.8 1.2E+02 0.0043 27.1 6.0 76 240-318 192-273 (336)
13 2if4_A ATFKBP42; FKBP-like, al 21.4 87 0.003 28.2 4.4 71 245-318 231-307 (338)
No 1
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=89.54 E-value=0.72 Score=43.08 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=55.3
Q ss_pred HHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcCcCchHHHHHHHHHHHHHc
Q 020908 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198 (320)
Q Consensus 119 ~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~~~Y~dp~Ns~L~~VLerR~GiPIsLsIIYleVArRL 198 (320)
++.++|.++.. ...++.+++++|++++.++..|..... .- ..-...+|+.|+|.+--.+.+++.++|.+
T Consensus 127 ~i~~~A~~~~~-----~~~~~~~~~~ai~~~v~~~~~Y~~~~~--~~----~~~a~~~l~~~~G~C~d~A~l~val~Ra~ 195 (293)
T 3isr_A 127 KLQKLAYKEFG-----KIENVYSKVLAITDWIYNNVEYISGST--NS----QTSAFDTITERAGVCRDFAHLGIALCRAL 195 (293)
T ss_dssp GSHHHHHHHHT-----TCCSHHHHHHHHHHHHHHHSEECTTSC--CT----TCCHHHHHHHCEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhhcEEeccCC--CC----CCCHHHhhcCCcEehHHHHHHHHHHHHHC
Confidence 46667766643 234567899999999999887765433 11 12346799999999999999999999999
Q ss_pred CCC
Q 020908 199 RIW 201 (320)
Q Consensus 199 Glp 201 (320)
|||
T Consensus 196 GIP 198 (293)
T 3isr_A 196 SIP 198 (293)
T ss_dssp TCC
T ss_pred CCC
Confidence 999
No 2
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=89.40 E-value=0.9 Score=45.33 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=56.6
Q ss_pred HHHHHHHHHhchhCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcCcCchHHHHHHHHHHHHHc
Q 020908 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198 (320)
Q Consensus 119 ~LD~La~ev~~~~~~~~~~~p~~~l~~Ln~vLf~elGF~Gn~~~~~Y~dp~Ns~L~~VLerR~GiPIsLsIIYleVArRL 198 (320)
.+.+++.++.. ...++.+++++|-.+.-++..|.+... .+......-...||++|.|.+...+.+++.++|.+
T Consensus 229 ~i~~~a~~l~~-----~~~~~~ek~~~iy~~V~~~i~y~~~~~--~~~g~~~~~a~~vl~~~~G~C~d~a~Ll~AllRa~ 301 (506)
T 3kd4_A 229 ESKTFAQFLTD-----KSGNEQEKVNIIRDHILNNLSTCPIPM--AMTGYTVRDIDTVLRSAYGTPLEIAQLLNVMLNAA 301 (506)
T ss_dssp HHHHHHHHHHS-----SCSSHHHHHHHHHHHHHHHCEECCCCG--GGGTTCCCCHHHHHHHTEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhccEecceec--ccCCCCCCCHHHHHHhCCcchHHHHHHHHHHHHHC
Confidence 44455555533 346788999999999888877765332 22221223478999999999999999999999999
Q ss_pred CCC
Q 020908 199 RIW 201 (320)
Q Consensus 199 Glp 201 (320)
|||
T Consensus 302 GIp 304 (506)
T 3kd4_A 302 GIP 304 (506)
T ss_dssp TCC
T ss_pred CCC
Confidence 999
No 3
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=50.27 E-value=90 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=27.6
Q ss_pred HHHHHhcCcCchHHHHHHHHHHHHHcCCC
Q 020908 173 LHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (320)
Q Consensus 173 L~~VLerR~GiPIsLsIIYleVArRLGlp 201 (320)
...+|++|+|.+--.+.+++.++|.+|||
T Consensus 132 ~~~~l~~r~G~C~d~A~lf~al~Ra~GIp 160 (295)
T 2f4m_A 132 PEKLLETRCGRCGEWANCFTLCCRALGFE 160 (295)
T ss_dssp HHHHHHHCEESHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCEeeHHHHHHHHHHHHHCCCC
Confidence 44899999999999999999999999999
No 4
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=47.88 E-value=21 Score=27.80 Aligned_cols=74 Identities=7% Similarity=-0.039 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcc-hhHhh
Q 020908 242 LLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFG-DMRCA 314 (320)
Q Consensus 242 IL~RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g-~~~~~ 314 (320)
....++.|+-.+|...++ ...++...+.++.+|..+ -|..+.++.....|...+++++-..|+.. .+++.
T Consensus 61 ~~~~~~~nla~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGD---LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp THHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 345678899999988887 455555555555444443 23477788888999999999999999988 77777
Q ss_pred hhcc
Q 020908 315 LAGM 318 (320)
Q Consensus 315 ~~~~ 318 (320)
|..|
T Consensus 138 l~~~ 141 (162)
T 3rkv_A 138 MKIV 141 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 5
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=46.41 E-value=30 Score=26.44 Aligned_cols=71 Identities=8% Similarity=-0.019 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcchhHhhhhcc
Q 020908 245 EILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAGM 318 (320)
Q Consensus 245 RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~~~~~~~~~ 318 (320)
....|+-.+|...++ ..-++...+-+..+|..+ -|..+.++.....|...+++.+-..|+..+.+..|+-|
T Consensus 48 ~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 48 ILYSNRAACLTKLME---FQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhcc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 345667777777666 333444444444444333 23367777888899999999999999999999888765
No 6
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=35.99 E-value=16 Score=21.73 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=9.3
Q ss_pred HHHHHHhhhhc
Q 020908 41 KLALHDVLDSI 51 (320)
Q Consensus 41 ~~~l~~~~~~~ 51 (320)
++|||++|+..
T Consensus 10 r~wL~~ll~~v 20 (24)
T 3h3g_B 10 RFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 69999999864
No 7
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=35.88 E-value=46 Score=25.82 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcch--hHhhhh
Q 020908 245 EILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFGD--MRCALA 316 (320)
Q Consensus 245 RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~--~~~~~~ 316 (320)
..+.|+-.+|...++ ...++...+.+..++..+ -+..+.++.....|...+++.+-..|+..+ ++++++
T Consensus 46 ~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 46 IYLSNRAAAYSASGQ---HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456677777777766 333444444443333332 233677788888999999999999999988 777776
Q ss_pred cc
Q 020908 317 GM 318 (320)
Q Consensus 317 ~~ 318 (320)
.|
T Consensus 123 ~~ 124 (164)
T 3sz7_A 123 TT 124 (164)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=34.13 E-value=80 Score=25.27 Aligned_cols=76 Identities=14% Similarity=0.035 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcchhHh
Q 020908 240 QMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFGDMRC 313 (320)
Q Consensus 240 r~IL~RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~~~~ 313 (320)
..+...+..|+-.+|...++ ..-++...+-+..++..+ -+..+.++.....|...+++++-..|...+.+.
T Consensus 84 ~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKD---YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34445788888888888777 444444444444444332 233667777788999999999999999988888
Q ss_pred hhhcc
Q 020908 314 ALAGM 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
.|+.|
T Consensus 161 ~l~~~ 165 (198)
T 2fbn_A 161 SYELC 165 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 9
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=27.49 E-value=34 Score=32.68 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=30.4
Q ss_pred CccccHHHHHhcCcCchHHHHHHHHHHHHHcCCC
Q 020908 168 PRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (320)
Q Consensus 168 p~Ns~L~~VLerR~GiPIsLsIIYleVArRLGlp 201 (320)
|++.-.-.+|++|+|.+--.|.++..++|-+|+|
T Consensus 168 PRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi~ 201 (335)
T 1x3z_A 168 PRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLD 201 (335)
T ss_dssp EEECCHHHHHHHCEECHHHHHHHHHHHHHTTTCC
T ss_pred CCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCCC
Confidence 3345567999999999999999999999999999
No 10
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=24.40 E-value=30 Score=24.82 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.4
Q ss_pred Hhhh--hcccccHHHHHHHHHHHHHHh
Q 020908 46 DVLD--SIGTDTTFAREAREGFYSQIK 70 (320)
Q Consensus 46 ~~~~--~~~~~~~~~~~ar~~f~~~l~ 70 (320)
|.|+ --|+.|+|.+++.+++++||.
T Consensus 41 dflenvprgtktahirealrryieeig 67 (70)
T 2q2k_A 41 DFLENVPRGTKTAHIREALRRYIEEIG 67 (70)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCccchHHHHHHHHHHHHHhc
Confidence 4566 469999999999999999986
No 11
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.06 E-value=94 Score=22.60 Aligned_cols=71 Identities=8% Similarity=-0.073 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhcc------CCcchhH
Q 020908 245 EILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNS------VRFGDMR 312 (320)
Q Consensus 245 RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~------~~~g~~~ 312 (320)
....|+-.+|...++ ...++...+-+..++..+ -+..+.++.....|...+++.+-.. |...+++
T Consensus 39 ~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~ 115 (126)
T 3upv_A 39 RGYSNRAAALAKLMS---FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115 (126)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHH
Confidence 456777777777766 333444444443333333 2336667777888999999999998 7777777
Q ss_pred hhhhcc
Q 020908 313 CALAGM 318 (320)
Q Consensus 313 ~~~~~~ 318 (320)
..|+.|
T Consensus 116 ~~l~~~ 121 (126)
T 3upv_A 116 QLYYKA 121 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 12
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=23.76 E-value=1.2e+02 Score=27.08 Aligned_cols=76 Identities=20% Similarity=0.097 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcchhHh
Q 020908 240 QMLLEEILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFGDMRC 313 (320)
Q Consensus 240 r~IL~RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~~~~ 313 (320)
.......+.||-.+|...++ ..-++...+.++.++..+ -+..+.++.....|...+++.+-..|+..+...
T Consensus 192 ~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~ 268 (336)
T 1p5q_A 192 QALRLASHLNLAMCHLKLQA---FSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 34456788999999988887 444444444444444333 233677777888999999999999999888777
Q ss_pred hhhcc
Q 020908 314 ALAGM 318 (320)
Q Consensus 314 ~~~~~ 318 (320)
.|+.|
T Consensus 269 ~l~~~ 273 (336)
T 1p5q_A 269 QLAVC 273 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 13
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=21.38 E-value=87 Score=28.25 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcccCCCchhhhHhhhhhHHhhhhccC------CchhhHhhhhHHHHHHHHHhhhhccCCcchhHhhhhcc
Q 020908 245 EILRNLKNAFWPFQHDRSRSLFLRAARAANCIDQLN------SGDSGLQLASAKAARHRLERGVWNSVRFGDMRCALAGM 318 (320)
Q Consensus 245 RmL~NLk~~y~~~~~~~s~~l~L~~~~~a~~~dr~~------~~~~~~~~~~~~~a~~~l~~~~~~~~~~g~~~~~~~~~ 318 (320)
....|+-.+|...++.. .++...+.++.+|..+ -+..+.++.....|...+++.+-..|+..+.+..|+.|
T Consensus 231 ~~~~nla~~~~~~g~~~---~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYD---EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHHHHTTTCCH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47788888998877743 3343333333333322 12367777788899999999999999988888877755
Done!