BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020909
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 9/157 (5%)
Query: 159 DVCMTLERFFYLNLPEVQKALHANRTNL-PYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 217
D C YLNLPEVQ ALHAN + + Y W++CS + + ++LPV + +IQ
Sbjct: 5 DPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQ 64
Query: 218 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWF---HKQQVGGWGTEYG 274
G+ VWV+SGD DSVVP+ +R R LA L V + W+ +++VGGW +Y
Sbjct: 65 AGLRVWVYSGDTDSVVPVSSTR---RSLAA-LELPVKTSWYPWYMAPTEREVGGWSVQYE 120
Query: 275 NLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLP 311
LT+VTVRGA H+VP +P++A LF F+ G +P
Sbjct: 121 G-LTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 159 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 217
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 5 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 64
Query: 218 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 277
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 65 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 119
Query: 278 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNNTRPA 317
T V+VRGA H VP +P +AL LF F+ G+ +P T+ A
Sbjct: 120 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQTKNA 159
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 6/156 (3%)
Query: 159 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 217
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 218 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 277
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 278 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNN 313
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPGQ 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 159 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 217
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 218 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 277
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 278 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 312
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 111 bits (278), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 6/155 (3%)
Query: 159 DVCMTLERFFYLNLPEVQKALHANRTN-LPYGWSMCSGVLNYSDTDSNINILPVLKRIIQ 217
D C Y N +VQ ALHAN T + Y W+ CS +N D+ ++LP+ + +I
Sbjct: 3 DPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIA 62
Query: 218 NGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL 277
G+ +WVFSGD D+VVPL +R I L T + W+ Q+VGGW Y L
Sbjct: 63 AGLRIWVFSGDTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-L 117
Query: 278 TFVTVRGAAHMVPYAQPSRALHLFSSFVHGRRLPN 312
T V+VRGA H VP +P +AL LF F+ G+ +P
Sbjct: 118 TLVSVRGAGHEVPLHRPRQALVLFQYFLQGKPMPG 152
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/342 (26%), Positives = 159/342 (46%), Gaps = 58/342 (16%)
Query: 5 MMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLR 64
+ +++ FPE+K+ +LFLTGESYAG YIP LA +++ + N++G+A+GN L
Sbjct: 129 LQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNLQGLAVGNGLSS 182
Query: 65 LDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN-------SCIEAITE 117
+Q+ ++ F + HG++ + + ++ + C S N N C+ + E
Sbjct: 183 YEQNDNSLVYFAYYHGLLGNRLWSSLQTHC--------CSQNKCNFYDNKDLECVTNLQE 234
Query: 118 ANKIVGDY-INNYDVILDVC----------YPTIVEQEL---------------RLRKMA 151
+IVG+ +N Y++ T+V Q+L L +
Sbjct: 235 VARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRSG 294
Query: 152 TKMSVGVDVCMTLERFFYLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINIL 209
K+ + T YLN P V+KAL+ LP W MC+ ++N Y ++N
Sbjct: 295 DKVRMDPPCTNTTAASTYLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS- 351
Query: 210 PVLKRIIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVT---VPYGAWFHKQQV 266
LK + + +++GD D +G + L + + + V YG +Q+
Sbjct: 352 QYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGD--SGEQI 409
Query: 267 GGWGTEYGNLLTFVTVRGAAHMVPYAQPSRALHLFSSFVHGR 308
G+ E+ + + F+T++GA HMVP +P A +FS F++ +
Sbjct: 410 AGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQ 450
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 2 HVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNP 61
+ F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+KG +GN
Sbjct: 134 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNG 189
Query: 62 LLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKI 121
L+ D +EF+W+HG++SD+ + C D ++ + + +C A A
Sbjct: 190 LIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAE 244
Query: 122 VGDYINNYDVILDVC 136
G+ I+ Y + VC
Sbjct: 245 QGN-IDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 2 HVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNP 61
+ F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+KG +GN
Sbjct: 134 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNG 189
Query: 62 LLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKI 121
L+ D +EF+W+HG++SD+ + C D ++ + + +C A A
Sbjct: 190 LIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAE 244
Query: 122 VGDYINNYDVILDVC 136
G+ I+ Y + VC
Sbjct: 245 QGN-IDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 2 HVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNP 61
+ F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+KG +GN
Sbjct: 129 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNG 184
Query: 62 LLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKI 121
L+ D +EF+W+HG++SD+ + C D ++ + + +C A A
Sbjct: 185 LIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAE 239
Query: 122 VGDYINNYDVILDVC 136
G+ I+ Y + VC
Sbjct: 240 QGN-IDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 2 HVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNP 61
+ F+ W+E+FP +K R+ ++ GESYAGHY+P+L+ ++ SK N+KG +GN
Sbjct: 130 YAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGFMVGNG 185
Query: 62 LLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTNSCIEAITEANKI 121
L+ D +EF+W+HG++SD+ + C D ++ + + +C A A
Sbjct: 186 LIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFI-----HPSPACDAATDVATAE 240
Query: 122 VGDYINNYDVILDVC 136
G+ I+ Y + VC
Sbjct: 241 QGN-IDMYSLYTPVC 254
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 51/321 (15%)
Query: 4 FMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSK--GFKFNIKGVAIGNP 61
F+ N+++ FPE +R++ L+GESYAG YIP A+ +L+HN SK G +++K + IGN
Sbjct: 154 FLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALLIGNG 213
Query: 62 LLRLDQDVPAIYEFFWSHGMISD------------EIGLTIMSDCDFDD---YVSGTSHN 106
+ + + F +I + E +++ D+ + N
Sbjct: 214 WIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHFSYQECEN 273
Query: 107 MTNSCIEAITEAN-KIVGDYINNYDVILDVCYPTIVEQELRLRKMATKMSVGVDVCMTLE 165
+ N + E++ K D +N Y+ L YP + M+ D+ +
Sbjct: 274 ILNLLLSYTRESSQKGTADCLNMYNFNLKDSYP------------SCGMNWPKDISF-VS 320
Query: 166 RFFYLNLPEVQKALHANRTNLPYGWSMCSGV----LNYSDTDSNINILPVLKRIIQNGIP 221
+FF + P V +LH + + + W C+ L+ + +I++LP L +++GI
Sbjct: 321 KFF--STPGVIDSLHLDSDKIDH-WKECTNSVGTKLSNPISKPSIHLLPGL---LESGIE 374
Query: 222 VWVFSGDQDSVVPLLGSRTLIRELARD--LNFEVTVPYGAWFHK-------QQVGGWGTE 272
+ +F+GD+D + G I L F W HK ++ G+ +
Sbjct: 375 IVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGY-VK 433
Query: 273 YGNLLTFVTVRGAAHMVPYAQ 293
Y LTFV+V A+HMVP+ +
Sbjct: 434 YDRNLTFVSVYNASHMVPFDK 454
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 2 HVFMMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNP 61
+ F++ W+E+FP + RE ++ GES GH+IPQL+ V+ + +S N +G+ + +
Sbjct: 134 YTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSP--FINFQGLLVSSG 189
Query: 62 LLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSH-NMTNSCIEAITEANK 120
L +D+ ++E +W HG+ISDE + + C GTS + T C E +A
Sbjct: 190 LTNDHEDMIGMFESWWHHGLISDETRDSGLKVC------PGTSFMHPTPECTEVWNKALA 243
Query: 121 IVGDYINNYDVILDVC 136
G+ IN Y + C
Sbjct: 244 EQGN-INPYTIYTPTC 258
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 136/338 (40%), Gaps = 70/338 (20%)
Query: 1 MHVFMMNWYEKFPEF--KSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAI 58
++ F+ ++++FPE+ K ++ + GESYAGHYIP A +L H K FN+ V I
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSH----KDRNFNLTSVLI 174
Query: 59 GN----PLLRLDQDVP-AIYEFFWSHGMISDEIG---------LTIMSDCDFDDYVSGTS 104
GN PL + + P A E + S+E L ++ C +D +
Sbjct: 175 GNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC-YDSQSVWSC 233
Query: 105 HNMTNSCIEAITEANKIVGDYINNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVD 159
T C A + G N YD+ D +CYPT+ + + L + K +VG +
Sbjct: 234 VPATIYCNNAQLAPYQRTGR--NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAE 291
Query: 160 VCMTLERFFYLNLPEVQKALHANRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNG 219
V + + N + L A PY + ++
Sbjct: 292 V----DHYESCNFDINRNFLFAGDWMKPYH--------------------TAVTDLLNQD 327
Query: 220 IPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL-- 277
+P+ V++GD+D + LG++ L + E F Q+V W + +
Sbjct: 328 LPILVYAGDKDFICNWLGNKAWTDVLPWKYDEE--------FASQKVRNWTASITDEVAG 379
Query: 278 --------TFVTVRGAAHMVPYAQPSRALHLFSSFVHG 307
T++ V HMVP+ P AL + + ++HG
Sbjct: 380 EVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 69/127 (54%), Gaps = 21/127 (16%)
Query: 5 MMNWYEKFPEFKSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAIGNPLLR 64
+ +++ FPE+K+ +LFLTGESYAG YIP LA +++ + N++G+A+GN L
Sbjct: 131 LQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPS------MNLQGLAVGNGLSS 184
Query: 65 LDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN-------SCIEAITE 117
+Q+ ++ F + HG++ + + ++ + C S N N C+ + E
Sbjct: 185 YEQNDNSLVYFAYYHGLLGNRLWSSLQTHC--------CSQNKCNFYDNKDLECVTNLQE 236
Query: 118 ANKIVGD 124
+IVG+
Sbjct: 237 VARIVGN 243
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 135/338 (39%), Gaps = 70/338 (20%)
Query: 1 MHVFMMNWYEKFPEF--KSRELFLTGESYAGHYIPQLADVLLDHNAHSKGFKFNIKGVAI 58
++ F+ ++++FPE+ K ++ + G SYAGHYIP A +L H K FN+ V I
Sbjct: 119 VYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSH----KDRNFNLTSVLI 174
Query: 59 GN----PLLRLDQDVP-AIYEFFWSHGMISDEIG---------LTIMSDCDFDDYVSGTS 104
GN PL + + P A E + S+E L ++ C +D +
Sbjct: 175 GNGLTDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESC-YDSQSVWSC 233
Query: 105 HNMTNSCIEAITEANKIVGDYINNYDVILD-----VCYPTIVEQELRLRKMATKMSVGVD 159
T C A + G N YD+ D +CYPT+ + + L + K +VG +
Sbjct: 234 VPATIYCNNAQLAPYQRTGR--NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAE 291
Query: 160 VCMTLERFFYLNLPEVQKALHANRTNLPYGWSMCSGVLNYSDTDSNINILPVLKRIIQNG 219
V + + N + L A PY + ++
Sbjct: 292 V----DHYESCNFDINRNFLFAGDWMKPYH--------------------TAVTDLLNQD 327
Query: 220 IPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHKQQVGGWGTEYGNLL-- 277
+P+ V++GD+D + LG++ L + E F Q+V W + +
Sbjct: 328 LPILVYAGDKDFICNWLGNKAWTDVLPWKYDEE--------FASQKVRNWTASITDEVAG 379
Query: 278 --------TFVTVRGAAHMVPYAQPSRALHLFSSFVHG 307
T++ V HMVP+ P AL + + ++HG
Sbjct: 380 EVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHG 417
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 169 YLNLPEVQKALHANRTNLPYGWSMCSGVLN--YSDTDSNINILPVLKRIIQNGIPVWVFS 226
YLN P V+KAL+ LP W MC+ ++N Y ++N LK + + +++
Sbjct: 14 YLNNPYVRKALNIPE-QLP-QWDMCNFLVNLQYRRLYRSMNS-QYLKLLSSQKYQILLYN 70
Query: 227 GDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFHK-----QQVGGWGTEYGNLLTFVT 281
GD D +G + L N ++ V W K +Q+ G+ E+ ++ F+T
Sbjct: 71 GDVDMACNFMGDEWFVDSL----NQKMEVQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLT 125
Query: 282 VRGAAHMVPYAQPSRALHLFSSFVHGR 308
++GA HMVP +P A +FS F++ +
Sbjct: 126 IKGAGHMVPTDKPLAAFTMFSRFLNKQ 152
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 220 IPVWVFSGDQDSVVPLLGSRTLIRELAR 247
IP+WVF + D VVP+ SR L+++LA
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAE 336
>pdb|3BWN|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWO|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWO|C Chain C, L-Tryptophan Aminotransferase
pdb|3BWO|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWO|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWO|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 50 KFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN 109
K + K + + + ++ LD P YE +W + D +TI CD Y S +MTN
Sbjct: 12 KISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----DMTN 64
Query: 110 SCI-------EAITEANKIVGD 124
C +AI + + +VG+
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGN 86
>pdb|3BWN|A Chain A, L-Tryptophan Aminotransferase
pdb|3BWN|B Chain B, L-Tryptophan Aminotransferase
pdb|3BWN|D Chain D, L-Tryptophan Aminotransferase
pdb|3BWN|E Chain E, L-Tryptophan Aminotransferase
pdb|3BWN|F Chain F, L-Tryptophan Aminotransferase
Length = 391
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 50 KFNIKGVAIGNPLLRLDQDVPAIYEFFWSHGMISDEIGLTIMSDCDFDDYVSGTSHNMTN 109
K + K + + + ++ LD P YE +W + D +TI CD Y S +MTN
Sbjct: 12 KISNKNIPMSDFVVNLDHGDPTAYEEYWRK--MGDRCTVTIRG-CDLMSYFS----DMTN 64
Query: 110 SC-------IEAITEANKIVGD 124
C +AI + + +VG+
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGN 86
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 215 IIQNGIPVWVFSGDQDSVVPLLGSRTLIRELARDLNFEVTVPYGAWFH 262
+ Q P + GDQD VVP + + +++ + F V +FH
Sbjct: 146 LTQMASPWLIVQGDQDEVVPFEQVKAFVNQISSPVEFVVMSGASHFFH 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,073,514
Number of Sequences: 62578
Number of extensions: 435716
Number of successful extensions: 901
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 850
Number of HSP's gapped (non-prelim): 25
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)