Query 020911
Match_columns 320
No_of_seqs 74 out of 76
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 10:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f9z_C Protein (chemotaxis met 96.2 0.02 7E-07 49.8 8.9 132 62-225 3-148 (159)
2 2gpi_A Conserved hypothetical 30.9 23 0.0008 28.0 2.1 47 2-48 25-78 (91)
3 2ckc_A Chromodomain-helicase-D 22.0 50 0.0017 25.8 2.4 19 21-39 44-62 (80)
4 1k4u_P Phagocyte NADPH oxidase 17.2 29 0.00099 22.8 0.1 12 287-298 12-23 (32)
5 3gb3_A Killerred; fluorescent 16.7 58 0.002 29.9 2.0 26 61-86 207-234 (235)
6 3lax_A Phenylacetate-coenzyme 15.1 47 0.0016 25.1 0.8 26 1-38 6-31 (109)
7 2fsu_A Protein PHNH; C-P lyase 14.3 72 0.0024 28.7 1.9 35 131-182 12-46 (210)
8 4dh4_A MIF; trimer, isomerase; 13.6 57 0.002 25.3 1.0 47 131-192 57-103 (114)
9 2cu3_A Unknown function protei 13.5 1.7E+02 0.0056 20.5 3.3 24 1-31 1-24 (64)
10 2rod_B NOXA, noxaa; MCL-1, apo 13.1 81 0.0028 19.6 1.3 13 303-315 4-16 (27)
No 1
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=96.20 E-value=0.02 Score=49.82 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=89.3
Q ss_pred ceEEEecceeEeeC-CC-ceee-eccCCCceeeeEEEeecCCCceEEEecc---Cc-------chhhhHHHHHHHhh-cC
Q 020911 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMD---NP-------EIVDIGLCQMLSLV-VD 127 (320)
Q Consensus 62 ~~LYV~QrE~A~~~-P~-~v~i-lGSDdATTChivVlR~~~sG~t~laH~D---gs-------~~v~~~v~~ml~~l-~~ 127 (320)
..++|.++||.++. |. ...+ ||| |+.|+|+++..+.-.|+|+= .. ...+.++..|++.+ ..
T Consensus 3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~ 77 (159)
T 2f9z_C 3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM 77 (159)
T ss_dssp CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence 45799999999885 55 3556 887 99999999999999999983 11 23478999999886 44
Q ss_pred CCCCCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEeccCCCcccCCCCCcce
Q 020911 128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPI 207 (320)
Q Consensus 128 ~~~~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~~~Nt~~~~~g~~~Pi 207 (320)
+....+|++.|.||=.=-... .....+....-..+.|++.... +.--=+++..- .
T Consensus 78 Ga~~~~L~aKifGGA~m~~~~-------------~~~IG~rNv~~a~~~L~~~gI~--i~aeD~GG~~g----------R 132 (159)
T 2f9z_C 78 GAKVERLEAKIAGGASMFESK-------------GMNIGARNVEAVKKHLKDFGIK--LLAEDTGGNRA----------R 132 (159)
T ss_dssp TCCGGGCEEEEEECCCCSCCC-------------SSCHHHHHHHHHHHHHHHTTCC--EEEEEECCSSC----------E
T ss_pred CCCHHHEEEEEEeCcccCccc-------------ccChHHHHHHHHHHHHHHCCCc--EEEEeCCCCCC----------c
Confidence 555789999999995532100 0235566677777777765543 33333333221 1
Q ss_pred EEEEEEEecCCeeecccc
Q 020911 208 FHGFLVETCTGSLSPASF 225 (320)
Q Consensus 208 i~Gi~VnvkTG~ifPAsF 225 (320)
=+-+++.||++.=-+.
T Consensus 133 --~i~f~~~tG~v~vk~~ 148 (159)
T 2f9z_C 133 --SVEYNIETGKLLVRKV 148 (159)
T ss_dssp --EEEEETTTTEEEEECC
T ss_pred --EEEEECCCCEEEEEEc
Confidence 2566888888865443
No 2
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=30.88 E-value=23 Score=27.97 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=36.7
Q ss_pred eeeCCeeeccCCCCC------CCCCCchhHHHHHHHhC-chHHHhhhhhccCcc
Q 020911 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSMEE 48 (320)
Q Consensus 2 l~v~g~~~~~~~~~~------~~~~~~~~~ll~~l~~h-P~l~~~a~~l~~~p~ 48 (320)
.+|||.++.|.=|.. ..++....++|++|..| ..|.+.|+.|.....
T Consensus 25 A~V~G~~i~C~Is~e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~ 78 (91)
T 2gpi_A 25 AQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEA 78 (91)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred EEeCCeEEEEEEEHHHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHccc
Confidence 379999999974433 23356788999999999 899999999886654
No 3
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=21.95 E-value=50 Score=25.78 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred CchhHHHHHHHhCchHHHh
Q 020911 21 SQGSDILVALLEHPVLVSA 39 (320)
Q Consensus 21 ~~~~~ll~~l~~hP~l~~~ 39 (320)
....+|+.||++||.|...
T Consensus 44 P~~KdL~dWLrqhP~y~vD 62 (80)
T 2ckc_A 44 PKNKDLVEWLKLHPTYTVD 62 (80)
T ss_dssp CBHHHHHHHHHHCTTEEES
T ss_pred ccccCHHHHHHHCCCcEEe
Confidence 4589999999999998654
No 4
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=17.15 E-value=29 Score=22.84 Aligned_cols=12 Identities=58% Similarity=0.850 Sum_probs=9.9
Q ss_pred CHHHHHHhcCCC
Q 020911 287 SDEEILRRCSTS 298 (320)
Q Consensus 287 ~D~~iL~~~STS 298 (320)
+-++||+.||++
T Consensus 12 s~~lIl~RCs~~ 23 (32)
T 1k4u_P 12 SADLILNRCSES 23 (32)
T ss_dssp CHHHHHHSSCHH
T ss_pred CHHHHHHHccHH
Confidence 678999999974
No 5
>3gb3_A Killerred; fluorescent protein, genetically encoded photosensitizer, phototoxicity; HET: CRQ; 1.75A {Anthomedusae SP} PDB: 3gl4_A* 4b30_A* 2wiq_A* 2wis_A* 3a8s_A*
Probab=16.68 E-value=58 Score=29.95 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=18.6
Q ss_pred CceEEEecceeEee--CCCceeeeccCC
Q 020911 61 SKYVYVFQREYATV--DPALVDYVGTDE 86 (320)
Q Consensus 61 ~~~LYV~QrE~A~~--~P~~v~ilGSDd 86 (320)
..-=+|.|.|.|++ +|.-.+-||||+
T Consensus 207 ~~~~~v~l~E~a~A~~~~~~~~~~~~~~ 234 (235)
T 3gb3_A 207 DKRDHVCQREVAYAHSVPRITSAIGSDE 234 (235)
T ss_dssp CCSSEEEEEEEEEEECCCCCSCSCC---
T ss_pred CCCCEEEEEEEEEEEcCCceeecccCCC
Confidence 45568999999998 566788899986
No 6
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=15.06 E-value=47 Score=25.12 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=19.0
Q ss_pred CeeeCCeeeccCCCCCCCCCCchhHHHHHHHhCchHHH
Q 020911 1 MIFVGGLPFSTNNSSWSSSSSQGSDILVALLEHPVLVS 38 (320)
Q Consensus 1 ~l~v~g~~~~~~~~~~~~~~~~~~~ll~~l~~hP~l~~ 38 (320)
||.|+|..|-+. ++=..|++||.+.+
T Consensus 6 mIiv~G~nv~P~------------eIE~vl~~~p~v~~ 31 (109)
T 3lax_A 6 MIILKGVNIFPI------------QIETILLQFKELGS 31 (109)
T ss_dssp CEEETTEEECHH------------HHHHHHHTCTTEEE
T ss_pred EEEECCEEECHH------------HHHHHHHhCCCccc
Confidence 899999998874 33345788887654
No 7
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=14.30 E-value=72 Score=28.75 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=14.4
Q ss_pred CCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccc
Q 020911 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQE 182 (320)
Q Consensus 131 ~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~ 182 (320)
.|.+-+-|.+||.|+ =..++..+..||.+|.+=-.
T Consensus 12 ~~~~~~~l~~gF~dp-----------------v~daQ~~FR~lL~Ams~PG~ 46 (210)
T 2fsu_A 12 SGSMGMTLETAFMLP-----------------VQDAQHSFRRLLKAMSEPGV 46 (210)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHSTTC
T ss_pred CcccceecccccCCc-----------------HHHHHHHHHHHHHHhCCCCc
Confidence 567778889999999 56788888888888876433
No 8
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=13.58 E-value=57 Score=25.25 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=36.0
Q ss_pred CCceeEEEecccCCCCCCCCCCCcccccccCCCCCCHHHHHHHHHHHhcccccEEEEEeEec
Q 020911 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVL 192 (320)
Q Consensus 131 ~g~levhLVGGF~D~~~~~~~~~~~~~~~~~~~g~S~~L~~~lL~~f~~~~~~~hL~t~CV~ 192 (320)
..-++|+++||...+. + +.++..||.-|-+.|...++.+++.-.=+.
T Consensus 57 ~a~v~i~~ig~~~~e~-----------~----~~l~~~i~~~l~~~Lgi~~~riyI~f~d~~ 103 (114)
T 4dh4_A 57 CAFIRVASIGGITSST-----------N----CKIAAALSAACERHLGVPKNRIYTTFTNKS 103 (114)
T ss_dssp CEEEEEEEESCCCHHH-----------H----HHHHHHHHHHHHHHHCCCGGGEEEEEEEEC
T ss_pred eEEEEEEEEcCCCHHH-----------H----HHHHHHHHHHHHHHhCcCcccEEEEEEeCC
Confidence 4578999999865541 1 578888999998999999999988755443
No 9
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=13.46 E-value=1.7e+02 Score=20.50 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=17.7
Q ss_pred CeeeCCeeeccCCCCCCCCCCchhHHHHHHH
Q 020911 1 MIFVGGLPFSTNNSSWSSSSSQGSDILVALL 31 (320)
Q Consensus 1 ~l~v~g~~~~~~~~~~~~~~~~~~~ll~~l~ 31 (320)
||.|||+++..+ . ..-.+||..|-
T Consensus 1 ~i~vNg~~~~~~-~------~tv~~ll~~l~ 24 (64)
T 2cu3_A 1 MVWLNGEPRPLE-G------KTLKEVLEEMG 24 (64)
T ss_dssp CEEETTEEECCT-T------CCHHHHHHHHT
T ss_pred CEEECCEEEEcC-C------CcHHHHHHHcC
Confidence 789999998763 2 34788877763
No 10
>2rod_B NOXA, noxaa; MCL-1, apoptosis, BH3-only, BCL-2, cytoplasm, developmental protein, differentiation, membrane, mitochondrion, nucleus, phosphoprotein; NMR {Mus musculus}
Probab=13.06 E-value=81 Score=19.60 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=11.0
Q ss_pred CCchHHHHHHhhh
Q 020911 303 GPDFVENLRRYGH 315 (320)
Q Consensus 303 pPhFv~~iR~~~~ 315 (320)
||.|..++|.+-+
T Consensus 4 ppefaaqlrkigd 16 (27)
T 2rod_B 4 PPEFAAQLRKIGD 16 (27)
T ss_dssp CTHHHHHHHHHHH
T ss_pred ChHHHHHHHHhCC
Confidence 8999999998643
Done!