BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020912
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YB1|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
           Violaceum (Efi Target Efi-500202) With Bound Mn, Amp And
           Phosphate.
 pdb|2YB4|A Chain A, Structure Of An Amidohydrolase From Chromobacterium
           Violaceum (Efi Target Efi-500202) With Bound So4, No
           Metal
          Length = 292

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 13/175 (7%)

Query: 13  RFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAK 72
           R G+  + GVE+S       S     VHI+       P++   L   L +IR+GR  RA+
Sbjct: 54  RRGIPFLNGVEVSV------SWGRHTVHIVGL--GIDPAE-PALAAGLKSIREGRLERAR 104

Query: 73  DMIXXXXXXXXXXXWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA 132
            M            ++   +         R H AR +V++G V++++  F +YL  G P 
Sbjct: 105 QMGASLEAAGIAGCFDGAMRWCDNPEMISRTHFARHLVDSGAVKDMRTVFRKYLTPGKPG 164

Query: 133 YSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDVGLHGLEV 183
           Y +      E AV  I   GG+AV+AHP        +I +L    +  G  G+EV
Sbjct: 165 YVSHQWASLEDAVGWIVGAGGMAVIAHPGRYDMGRTLIERLILDFQAAGGQGIEV 219


>pdb|3E0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
           Phosphoesterase (Bad_1165) From Bifidobacterium
           Adolescentis Atcc 15703 At 2.40 A Resolution
 pdb|3O0F|A Chain A, Crystal Structure Of A Putative Metal-Dependent
           Phosphoesterase (Bad_1165) From Bifidobacterium
           Adolescentis Atcc 15703 At 1.94 A Resolution
          Length = 301

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 78/193 (40%), Gaps = 21/193 (10%)

Query: 1   MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFL 60
            +G  EA E +   G+ ++ G EI+ +      + +  VH LA+     PS  E + +  
Sbjct: 53  TAGWDEATEASEEIGLPLLLGTEITAV------DEDVSVHXLAFQYD--PSN-EHISSXF 103

Query: 61  ANIRDGRFLRAKDMIXXXXXXXXXXXWEHVAKIA-GKGVAPGRLHVARAMVEAGHVENLK 119
           AN R  R  R K  +            + +A++  G+    GR H+A A+V AG  E   
Sbjct: 104 ANTRAARLRRTKRXVERLSQDFPITWDDVLAQVKEGERTTIGRPHIADALVAAGVYETRS 163

Query: 120 QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDV--- 176
            AFA  +      Y     P     +  +   GG+ V AH     +P    R L D    
Sbjct: 164 DAFADAVSAKSKYYIPTPSPSTHEVIAAVKGAGGVVVAAH---AGDPQRNRRLLSDEQLD 220

Query: 177 -----GLHGLEVY 184
                GL GLEV+
Sbjct: 221 AXIADGLDGLEVW 233


>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
           Glutaredoxin 3
 pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
           Glutaredoxin 3
          Length = 112

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 20/24 (83%)

Query: 243 CGAIKEILESYADEPSDSNLSHIT 266
           C A+K++ E+ ++EPS+SN+S ++
Sbjct: 36  CKALKQVFEAISNEPSNSNVSFLS 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,983,941
Number of Sequences: 62578
Number of extensions: 347116
Number of successful extensions: 802
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 4
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)