BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020912
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O54453|TRPH_SALTY Protein TrpH OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=trpH PE=3 SV=3
Length = 293
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 100/219 (45%), Gaps = 19/219 (8%)
Query: 2 SGIPEAIETARRFGM--KIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENF 59
+ IP A E R G+ +IPGVEIST++ E+ E +HI+ + + +F
Sbjct: 53 AAIPAAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNIDIA---HPAMRDF 103
Query: 60 LANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLK 119
LA + R R + + +L K +P WE ++A G A R H AR +VE G +
Sbjct: 104 LAQQTERRQARGRLIAERLEKAHIPGAWEGALRLANGG-AVTRGHFARFLVECGKAATMA 162
Query: 120 QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KD 175
F +YL G Y E A+ +IH +GG AVLAHP A +++L D
Sbjct: 163 DVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVAHFAD 222
Query: 176 VGLHGLEV---YRSDGKLVAYTDLADTYGLLKLGGSDYH 211
+EV +S + LA + L GSD+H
Sbjct: 223 HHGDAMEVAQCQQSPNERTQLATLARQHHLWASLGSDFH 261
>sp|P44176|TRPH_HAEIN Protein TrpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=trpH PE=3 SV=1
Length = 274
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 98/218 (44%), Gaps = 18/218 (8%)
Query: 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFL 60
++GI EA A+ G+++I GVEIST + RG +HI+ K L
Sbjct: 43 IAGIDEAEIAAKEVGIELITGVEISTNWEGRG------IHIVGLNFDKTHPKMTALLQSQ 96
Query: 61 ANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQ 120
+R+ R + D KL K +P ++ +A V R H AR +V+ G V N Q
Sbjct: 97 KALREKRAVEIGD---KLEKAGIPNAYDGAKALADGEVT--RAHYARYLVQIGKVSNDGQ 151
Query: 121 AFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL----KDV 176
AF RYL G A+ A++ IH GG+A++AHP +RKL K
Sbjct: 152 AFKRYLGQGKSAFVKAEWADIPTAIETIHAAGGIAIIAHPLRYNMTGKWVRKLIVDFKAW 211
Query: 177 GLHGLEVY---RSDGKLVAYTDLADTYGLLKLGGSDYH 211
G G+E+ ++ + A + L GSD+H
Sbjct: 212 GGDGMEMADCGQTKDQRQMLARWAKEFDLQGSVGSDFH 249
>sp|P77766|TRPH_ECOLI Protein TrpH OS=Escherichia coli (strain K12) GN=trpH PE=3 SV=1
Length = 293
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 2 SGIPEAIETARRFGM--KIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENF 59
+ I A E R G+ +IPGVEIST++ E+ E +HI+ + + F
Sbjct: 49 AAIAPAREEISRSGLALNLIPGVEISTVW-----ENHE-IHIVGLNIDI---THPLMCEF 99
Query: 60 LANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLK 119
LA + R RA+ + +L K ++P E ++A +G A R H AR +VE G ++
Sbjct: 100 LAQQTERRNQRAQLIAERLEKAQIPGALEGAQRLA-QGGAVTRGHFARFLVECGKASSMA 158
Query: 120 QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHP--------WALKNPAAIIR 171
F +YL G Y E A+ +IH +GG AVLAHP W LK A
Sbjct: 159 DVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKW-LKRLVAHFA 217
Query: 172 KLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYH 211
+ + + +S + LA + L GSD+H
Sbjct: 218 EHHGDAMEVAQCQQSPNERTQLAALARQHHLWASQGSDFH 257
>sp|A4XMY1|HIS8_CALS8 Histidinol-phosphate aminotransferase OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=hisC
PE=3 SV=1
Length = 358
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 60 LANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 108
LA++R G + ++++I KLN+++ P HVA+IA + H+ +A
Sbjct: 225 LASLRIGYAIASEEIIEKLNRVRPPFNVNHVAQIAAIAALDDQEHIEKA 273
>sp|Q3V4Q5|Y710_ATV Putative transmembrane protein ORF710 OS=Acidianus two-tailed virus
PE=4 SV=1
Length = 710
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 169 IIRKLKDVGLHGLEVYRSD-------GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESEL 221
++ K VG+ G+ + + L+ +TDL TYG+L G Y G L
Sbjct: 401 VVVKFYGVGVTGIHISTNAFGINQQYSALIGFTDLLHTYGVLIQNGEAYSYIAGTKGPAL 460
Query: 222 GSVKLPVLV 230
G+V P++V
Sbjct: 461 GNVTFPMVV 469
>sp|Q6NRI0|P6R3A_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-A
OS=Xenopus laevis GN=ppp6r3-a PE=2 SV=1
Length = 852
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 232 NDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECL 291
N+FL I C A+ IL S D P S +S G +LK + L C L+D L
Sbjct: 385 NNFLHTQVEI-CLAL--ILASPGDSPEHSTISEQNSTGDHVLLKHLF-LKCH--LIDRIL 438
Query: 292 SLWLTNEERQS 302
W NE+RQS
Sbjct: 439 EAWAMNEKRQS 449
>sp|A4QNA8|WEE2_XENTR Wee1-like protein kinase 2 OS=Xenopus tropicalis GN=wee2 PE=2 SV=1
Length = 562
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 40 HILAYYSSCGPSKYEELEN-----------FLANIRDGRFLRAKDMILKLNKLKLPLKWE 88
H++ YYS+ + ++N + N ++GRF+ +++ L ++ + LK+
Sbjct: 276 HVVRYYSAWAEDDHMIIQNEYCNGGSLQDLIMENKKEGRFVPEQELKEILLQVSMGLKYI 335
Query: 89 HVAKIAGKGVAPGRLHVARAMVEAGHVEN 117
H + + + P + + R E G E+
Sbjct: 336 HSSGLVHMDIKPSNIFICRKQTEVGQDES 364
>sp|Q6NRF1|P6R3B_XENLA Serine/threonine-protein phosphatase 6 regulatory subunit 3-B
OS=Xenopus laevis GN=ppp6r3-b PE=2 SV=1
Length = 850
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 232 NDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLKRNYPLNCGKGLVDECL 291
N+FL I C A+ IL S D P S +S G +LK + L C L+D L
Sbjct: 385 NNFLHTQVEI-CIAL--ILASPGDSPEHSTISEENSAGDHVLLKHLF-LKCH--LIDRIL 438
Query: 292 SLWLTNEERQS 302
W NE+RQS
Sbjct: 439 EAWAMNEKRQS 449
>sp|Q9PN86|RNY_CAMJE Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 276 RNYPLNCGKGL 286
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A7ZDR5|RNY_CAMC1 Ribonuclease Y OS=Campylobacter concisus (strain 13826) GN=rny PE=3
SV=2
Length = 517
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
HG E S++ + D L ARP GA +E+LES+ + + +I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADALSAARP---GARREVLESFLKRVEE--IENIAKSKEG--IK 456
Query: 276 RNYPLNCGKGL 286
+ Y +N G+ +
Sbjct: 457 QAYAINAGREI 467
>sp|Q5HTQ5|RNY_CAMJR Ribonuclease Y OS=Campylobacter jejuni (strain RM1221) GN=rny PE=3
SV=1
Length = 517
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 276 RNYPLNCGKGL 286
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A1W0J3|RNY_CAMJJ Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype
O:23/36 (strain 81-176) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 276 RNYPLNCGKGL 286
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A8FMR4|RNY_CAMJ8 Ribonuclease Y OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rny PE=3 SV=1
Length = 517
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 276 RNYPLNCGKGL 286
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A7H2G9|RNY_CAMJD Ribonuclease Y OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rny PE=3 SV=1
Length = 517
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
HG E S++ + D L ARP GA +E+LE++ S+ L I + G +K
Sbjct: 404 HGHEEATSIESAAVCAADTLSAARP---GARREVLEAFLKRVSE--LEDIAKSKEG--IK 456
Query: 276 RNYPLNCGKGL 286
Y +N G+ +
Sbjct: 457 NAYAINAGREI 467
>sp|A0M2K0|RNY_GRAFK Ribonuclease Y OS=Gramella forsetii (strain KT0803) GN=rny PE=3
SV=1
Length = 520
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 216 HGESELGSVKLPVLVLNDFLKVARPIWCGAIKEILESYADEPSDSNLSHITRYGRGKMLK 275
H E E+ S+ P++ + D + ARP GA +++L+SY D L I +G G +K
Sbjct: 407 HDEIEMNSLLSPIVQVCDAISGARP---GARRQVLDSYIQRLKD--LEEIA-FGFGG-VK 459
Query: 276 RNYPLNCGKGLVDECLSLWLTNEERQSAEFE 306
+ Y + G+ L S +++E+ + FE
Sbjct: 460 KAYAIQAGRELRVIVESEKVSDEKASNLSFE 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,360,872
Number of Sequences: 539616
Number of extensions: 5558265
Number of successful extensions: 12378
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12369
Number of HSP's gapped (non-prelim): 19
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)