Query 020912
Match_columns 320
No_of_seqs 194 out of 1260
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 99.9 1.1E-26 2.4E-31 217.2 16.9 205 1-215 42-251 (258)
2 TIGR00375 conserved hypothetic 98.8 1.2E-08 2.6E-13 100.3 8.4 79 140-224 115-199 (374)
3 PRK09248 putative hydrolase; V 98.6 1.6E-07 3.4E-12 87.1 8.3 77 140-223 114-202 (246)
4 PRK00448 polC DNA polymerase I 98.5 3.6E-08 7.8E-13 110.6 0.5 163 1-205 375-561 (1437)
5 PF13263 PHP_C: PHP-associated 97.4 8E-05 1.7E-09 53.9 2.1 32 189-225 3-34 (56)
6 PRK07328 histidinol-phosphatas 96.9 0.0028 6.1E-08 59.6 7.7 69 144-214 146-234 (269)
7 PRK08392 hypothetical protein; 96.9 0.0033 7.1E-08 57.2 7.2 74 143-223 108-191 (215)
8 PRK07945 hypothetical protein; 96.8 0.0028 6E-08 61.8 6.6 71 142-214 211-297 (335)
9 TIGR01856 hisJ_fam histidinol 96.7 0.0038 8.1E-08 58.2 6.4 71 143-214 146-242 (253)
10 PRK06361 hypothetical protein; 96.4 0.0069 1.5E-07 54.6 6.1 61 150-213 110-173 (212)
11 PRK05672 dnaE2 error-prone DNA 96.3 0.014 3E-07 64.9 8.9 78 1-95 46-123 (1046)
12 COG1379 PHP family phosphoeste 96.3 0.012 2.6E-07 57.0 7.0 93 139-235 119-220 (403)
13 PRK08123 histidinol-phosphatas 96.3 0.012 2.6E-07 55.4 7.0 75 143-223 157-259 (270)
14 PRK00912 ribonuclease P protei 96.2 0.014 3E-07 53.9 7.0 72 142-214 92-180 (237)
15 PRK06740 histidinol-phosphatas 96.2 0.0099 2.2E-07 57.9 6.1 75 142-223 205-301 (331)
16 PRK08609 hypothetical protein; 95.8 0.029 6.2E-07 58.6 8.0 65 149-214 455-531 (570)
17 PRK05588 histidinol-phosphatas 95.5 0.023 5E-07 52.8 5.5 75 143-223 128-227 (255)
18 PRK07329 hypothetical protein; 95.4 0.036 7.8E-07 51.5 6.2 72 142-214 128-222 (246)
19 smart00481 POLIIIAc DNA polyme 94.8 0.04 8.7E-07 40.6 3.9 27 1-27 40-66 (67)
20 COG1387 HIS2 Histidinol phosph 94.7 0.13 2.7E-06 47.9 7.7 82 140-227 112-207 (237)
21 PF02811 PHP: PHP domain; Int 94.0 0.48 1.1E-05 40.2 9.4 40 1-46 41-80 (175)
22 COG4464 CapC Capsular polysacc 92.7 0.35 7.7E-06 44.7 6.7 76 141-217 118-202 (254)
23 PRK07135 dnaE DNA polymerase I 89.5 0.65 1.4E-05 51.5 6.0 37 1-45 44-80 (973)
24 PF10566 Glyco_hydro_97: Glyco 85.1 2.8 6.1E-05 40.0 6.9 76 137-216 71-161 (273)
25 COG0613 Predicted metal-depend 72.1 2 4.4E-05 40.4 1.5 75 137-213 96-178 (258)
26 COG0826 Collagenase and relate 69.8 9.9 0.00021 37.5 5.8 65 139-208 49-120 (347)
27 PRK05673 dnaE DNA polymerase I 67.7 20 0.00043 40.8 8.2 56 1-61 43-100 (1135)
28 TIGR01405 polC_Gram_pos DNA po 67.3 6.2 0.00013 45.1 4.2 29 1-29 145-173 (1213)
29 TIGR03234 OH-pyruv-isom hydrox 65.8 13 0.00028 34.0 5.4 42 166-207 16-58 (254)
30 TIGR00262 trpA tryptophan synt 63.9 45 0.00097 31.3 8.7 99 69-202 24-141 (256)
31 PRK09997 hydroxypyruvate isome 63.7 18 0.00039 33.3 6.0 41 166-206 17-58 (258)
32 PF02679 ComA: (2R)-phospho-3- 61.7 13 0.00029 34.9 4.7 61 141-204 56-129 (244)
33 PRK09532 DNA polymerase III su 61.4 21 0.00045 39.6 6.7 46 1-46 44-90 (874)
34 PRK05473 hypothetical protein; 60.3 26 0.00056 27.7 5.3 31 105-137 27-57 (86)
35 PF06135 DUF965: Bacterial pro 60.3 17 0.00036 28.4 4.2 30 105-136 24-53 (79)
36 COG0159 TrpA Tryptophan syntha 58.2 68 0.0015 30.6 8.8 37 166-202 111-148 (265)
37 COG0800 Eda 2-keto-3-deoxy-6-p 58.0 39 0.00084 31.2 6.9 59 142-201 4-63 (211)
38 PRK09989 hypothetical protein; 55.6 25 0.00053 32.4 5.4 41 166-206 17-58 (258)
39 cd06556 ICL_KPHMT Members of t 53.7 75 0.0016 29.7 8.2 70 141-213 114-206 (240)
40 PF07643 DUF1598: Protein of u 53.6 15 0.00033 28.9 3.0 16 99-114 50-65 (84)
41 PRK09856 fructoselysine 3-epim 53.5 38 0.00083 31.1 6.3 46 166-211 15-70 (275)
42 PF01726 LexA_DNA_bind: LexA D 53.3 19 0.00042 26.7 3.5 45 72-116 13-57 (65)
43 CHL00200 trpA tryptophan synth 53.3 1E+02 0.0022 29.2 9.2 102 68-202 28-145 (263)
44 TIGR03849 arch_ComA phosphosul 52.4 43 0.00093 31.4 6.4 61 141-204 43-116 (237)
45 PRK13111 trpA tryptophan synth 50.6 1.2E+02 0.0026 28.5 9.2 58 139-197 104-162 (258)
46 TIGR00594 polc DNA-directed DN 49.4 52 0.0011 37.2 7.5 56 1-61 42-102 (1022)
47 COG1902 NemA NADH:flavin oxido 48.1 37 0.00081 33.7 5.5 24 138-161 82-107 (363)
48 PLN02591 tryptophan synthase 45.9 1.3E+02 0.0028 28.2 8.6 59 139-198 93-152 (250)
49 PF10788 DUF2603: Protein of u 45.0 2E+02 0.0042 24.8 8.7 70 53-150 58-127 (137)
50 PRK06826 dnaE DNA polymerase I 44.5 1E+02 0.0022 35.4 8.8 54 2-60 47-104 (1151)
51 COG3473 Maleate cis-trans isom 43.2 1.2E+02 0.0026 28.3 7.5 75 142-225 88-164 (238)
52 PRK13209 L-xylulose 5-phosphat 42.4 58 0.0013 30.1 5.7 41 166-206 23-75 (283)
53 PF01301 Glyco_hydro_35: Glyco 40.1 48 0.001 32.1 4.9 47 159-205 17-80 (319)
54 COG4472 Uncharacterized protei 39.4 64 0.0014 25.3 4.4 31 105-137 27-57 (88)
55 COG2355 Zn-dependent dipeptida 38.5 17 0.00036 35.5 1.4 23 141-163 204-227 (313)
56 PRK07259 dihydroorotate dehydr 38.4 2.3E+02 0.0049 26.8 9.2 47 140-186 144-191 (301)
57 PTZ00170 D-ribulose-5-phosphat 36.4 1.8E+02 0.0039 26.6 7.9 38 140-177 76-114 (228)
58 PRK05718 keto-hydroxyglutarate 36.2 1.2E+02 0.0025 27.8 6.5 60 141-201 5-65 (212)
59 TIGR02336 1,3-beta-galactosyl- 35.7 1E+02 0.0022 33.3 6.7 41 141-181 292-332 (719)
60 PRK13210 putative L-xylulose 5 35.5 77 0.0017 29.2 5.3 41 166-206 18-70 (284)
61 PF00290 Trp_syntA: Tryptophan 35.4 82 0.0018 29.8 5.5 57 141-198 104-161 (259)
62 PRK08883 ribulose-phosphate 3- 33.4 2.5E+02 0.0053 25.7 8.2 70 140-209 69-138 (220)
63 cd04726 KGPDC_HPS 3-Keto-L-gul 33.1 1.5E+02 0.0032 25.9 6.6 15 146-160 71-85 (202)
64 PLN02905 beta-amylase 32.9 85 0.0018 33.6 5.5 49 167-215 289-350 (702)
65 PRK13125 trpA tryptophan synth 32.7 2.1E+02 0.0046 26.3 7.8 67 138-204 87-156 (244)
66 cd04733 OYE_like_2_FMN Old yel 32.6 1.1E+02 0.0023 29.7 6.0 18 140-157 83-100 (338)
67 PF01261 AP_endonuc_2: Xylose 32.5 47 0.001 28.5 3.2 36 171-206 2-45 (213)
68 PRK07279 dnaE DNA polymerase I 32.5 1.1E+02 0.0024 34.6 6.7 50 1-61 43-92 (1034)
69 PRK06552 keto-hydroxyglutarate 31.4 1.5E+02 0.0032 27.1 6.4 64 143-207 5-73 (213)
70 PRK07374 dnaE DNA polymerase I 30.7 94 0.002 35.7 5.9 46 1-46 44-92 (1170)
71 PRK05286 dihydroorotate dehydr 30.6 2.5E+02 0.0053 27.4 8.2 48 140-187 193-248 (344)
72 PLN02161 beta-amylase 30.6 1.7E+02 0.0037 30.6 7.2 49 167-215 120-181 (531)
73 cd03309 CmuC_like CmuC_like. P 30.5 1.1E+02 0.0023 29.8 5.5 66 139-209 198-265 (321)
74 KOG3040 Predicted sugar phosph 30.4 1.8E+02 0.0038 27.3 6.5 124 16-163 4-150 (262)
75 PRK13523 NADPH dehydrogenase N 29.7 1.3E+02 0.0028 29.3 6.1 23 140-162 82-106 (337)
76 TIGR00985 3a0801s04tom mitocho 29.6 2.9E+02 0.0062 24.1 7.5 17 146-162 110-126 (148)
77 PLN00197 beta-amylase; Provisi 29.6 1.1E+02 0.0023 32.3 5.5 64 157-227 123-200 (573)
78 COG3622 Hfi Hydroxypyruvate is 29.6 5E+02 0.011 24.7 10.1 130 37-188 100-245 (260)
79 TIGR01037 pyrD_sub1_fam dihydr 29.5 3.5E+02 0.0076 25.4 8.9 45 141-185 145-190 (300)
80 cd00530 PTE Phosphotriesterase 28.8 1.9E+02 0.0041 26.8 6.8 84 129-213 149-248 (293)
81 TIGR03884 sel_bind_Methan sele 28.6 94 0.002 24.0 3.8 34 3-46 30-63 (74)
82 PF01208 URO-D: Uroporphyrinog 28.6 87 0.0019 29.9 4.6 66 140-211 221-288 (343)
83 cd02933 OYE_like_FMN Old yello 28.2 1.4E+02 0.003 29.1 6.0 13 173-185 161-173 (338)
84 COG0399 WecE Predicted pyridox 28.2 3.8E+02 0.0082 26.8 9.1 78 126-205 71-153 (374)
85 PRK08392 hypothetical protein; 27.5 64 0.0014 29.0 3.3 24 5-28 50-73 (215)
86 PLN02705 beta-amylase 26.8 1E+02 0.0022 32.9 4.9 56 168-227 272-341 (681)
87 PRK08309 short chain dehydroge 26.7 37 0.0008 29.9 1.5 26 292-317 146-171 (177)
88 PLN02801 beta-amylase 26.4 2.2E+02 0.0048 29.7 7.1 57 167-227 40-110 (517)
89 PF04309 G3P_antiterm: Glycero 26.3 2.4E+02 0.0053 25.1 6.6 62 137-204 29-94 (175)
90 PLN02803 beta-amylase 26.0 1.3E+02 0.0029 31.4 5.5 57 167-227 110-180 (548)
91 TIGR02631 xylA_Arthro xylose i 25.5 1.1E+02 0.0024 30.5 4.8 41 166-206 34-86 (382)
92 cd02930 DCR_FMN 2,4-dienoyl-Co 25.2 1.8E+02 0.0039 28.3 6.2 23 140-162 78-102 (353)
93 COG0587 DnaE DNA polymerase II 24.9 2.3E+02 0.0051 32.5 7.6 54 1-60 45-98 (1139)
94 PRK15447 putative protease; Pr 24.8 2.1E+02 0.0045 27.4 6.4 61 139-204 48-110 (301)
95 KOG4175 Tryptophan synthase al 24.7 2.2E+02 0.0048 26.5 6.1 64 139-202 77-149 (268)
96 TIGR03551 F420_cofH 7,8-dideme 23.8 1.2E+02 0.0027 29.3 4.7 13 167-179 141-153 (343)
97 PF13344 Hydrolase_6: Haloacid 23.8 1.7E+02 0.0036 23.2 4.7 19 72-90 45-63 (101)
98 PRK03892 ribonuclease P protei 23.5 2.5E+02 0.0055 26.0 6.3 87 120-212 75-177 (216)
99 cd06557 KPHMT-like Ketopantoat 23.4 3.4E+02 0.0074 25.6 7.4 110 141-258 116-249 (254)
100 PRK08508 biotin synthase; Prov 23.2 2.6E+02 0.0057 26.3 6.7 39 142-182 78-117 (279)
101 PF09508 Lact_bio_phlase: Lact 23.1 1.1E+02 0.0023 33.0 4.3 42 141-182 289-330 (716)
102 cd04734 OYE_like_3_FMN Old yel 23.1 2E+02 0.0043 28.1 6.0 23 140-162 78-102 (343)
103 PF09339 HTH_IclR: IclR helix- 22.9 72 0.0016 22.0 2.1 47 69-116 3-49 (52)
104 cd00952 CHBPH_aldolase Trans-o 22.7 5.7E+02 0.012 24.4 9.0 76 152-236 76-161 (309)
105 TIGR01182 eda Entner-Doudoroff 22.6 2E+02 0.0043 26.2 5.5 55 146-201 3-58 (204)
106 PRK04051 rps4p 30S ribosomal p 22.1 2E+02 0.0043 25.8 5.2 60 67-129 66-128 (177)
107 PRK07565 dihydroorotate dehydr 21.9 4.9E+02 0.011 25.1 8.4 47 141-187 153-200 (334)
108 PF02061 Lambda_CIII: Lambda P 21.8 2.1E+02 0.0046 19.6 4.1 28 57-84 18-45 (45)
109 COG0735 Fur Fe2+/Zn2+ uptake r 21.8 5E+02 0.011 22.0 8.1 72 72-160 6-77 (145)
110 PRK15452 putative protease; Pr 21.7 1.6E+02 0.0034 30.1 5.1 66 140-210 47-119 (443)
111 PRK00311 panB 3-methyl-2-oxobu 21.6 3.9E+02 0.0084 25.4 7.4 110 141-258 119-252 (264)
112 PF06844 DUF1244: Protein of u 21.2 32 0.00068 26.0 -0.0 13 285-297 11-23 (68)
113 PRK05898 dnaE DNA polymerase I 21.0 2.3E+02 0.0051 32.0 6.5 38 1-46 43-80 (971)
114 COG2406 Protein distantly rela 21.0 5.8E+02 0.013 22.5 8.5 22 130-151 94-115 (172)
115 PRK07114 keto-hydroxyglutarate 20.6 3.1E+02 0.0067 25.3 6.4 47 140-187 4-50 (222)
116 COG2100 Predicted Fe-S oxidore 20.4 2.4E+02 0.0052 28.1 5.8 51 135-185 171-222 (414)
117 PF07862 Nif11: Nitrogen fixat 20.3 2.6E+02 0.0057 19.0 4.6 19 72-90 30-48 (49)
118 cd00717 URO-D Uroporphyrinogen 20.2 3.6E+02 0.0079 25.7 7.1 45 139-186 215-260 (335)
119 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.1 4.9E+02 0.011 24.4 7.9 38 168-205 95-135 (275)
120 TIGR00542 hxl6Piso_put hexulos 20.1 2.8E+02 0.006 25.6 6.1 41 166-206 18-70 (279)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=99.95 E-value=1.1e-26 Score=217.24 Aligned_cols=205 Identities=34% Similarity=0.457 Sum_probs=184.8
Q ss_pred CCCHHHHH-HHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020912 1 MSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLN 79 (320)
Q Consensus 1 ~~Gv~ea~-~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~d~~~~~~~~L~~~l~~~~~~R~~r~~~ii~~L~ 79 (320)
+.|+.+|. ..+..+|+.+|||+|+||.|. +..+|+++|++|. ....+.+.+.+.+..|.+|++++.+++.
T Consensus 42 ~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (258)
T COG0613 42 VRGLLEARRAAGLRLGITVIPGIEISTTWG------GHIIHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLG 112 (258)
T ss_pred ccccHHHHHHhhcCCCceeeccEEeecccC------CeEEEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCC
Confidence 36788886 777889999999999999996 7899999999975 3456889999999999999999999999
Q ss_pred hCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHhhcCCCCccccCCCCCHHHHHHHHHHcCCEEEecC
Q 020912 80 KLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAH 159 (320)
Q Consensus 80 ~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~~~~af~~~L~~g~p~yv~~~~~~~~e~I~~I~~aGGiaVlAH 159 (320)
..+++-.++.+...++.+ .+.|.|+++.+|+.+++.+....|++|+..++++|++..+.+.++.|..++.+||++|+||
T Consensus 113 ~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ah 191 (258)
T COG0613 113 KAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAH 191 (258)
T ss_pred ccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccchHHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEecc
Confidence 999999999998877644 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-hHHHHHHHHHcCccEEEEecCcC---cHHHHHHHHHHcCCceeecCCCCCCCC
Q 020912 160 PWALKN-PAAIIRKLKDVGLHGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGG 215 (320)
Q Consensus 160 P~~~~~-~~~~i~~l~~~GldGIEv~~~~~---~~~~~~~lA~~~~L~~tgGSD~Hg~~~ 215 (320)
|.++.. ...++..+.+.|.||||+++... +...+..++++++++.|+|||||.++.
T Consensus 192 p~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~~~~k~~~~l~s~gs~fh~~~~ 251 (258)
T COG0613 192 PGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLALLAKEFGLLASVGSDFHTPGD 251 (258)
T ss_pred ccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHHHHHHHhhhhhcccccccCCCc
Confidence 998764 25788899999999999998763 567888999999999999999999753
No 2
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=98.81 E-value=1.2e-08 Score=100.27 Aligned_cols=79 Identities=18% Similarity=0.112 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCCChHHHHHHH---H-HcC--ccEEEEecCcCcHHHHHHHHHHcCCceeecCCCCCC
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKL---K-DVG--LHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGR 213 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l---~-~~G--ldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~Hg~ 213 (320)
+..+.++.+++.||++|+||+++.++ +++..+ . ..| -|+||+..+... .++..++...++....+||+|.+
T Consensus 115 ~~~~~~~~v~~~gGi~iPAHiftP~~--Sl~g~~~~~~~~~g~~p~avElglS~d~-~ma~~~s~L~~~~~ISnSDAHsl 191 (374)
T TIGR00375 115 ETGLNLEKVQDYGGLFGPAHIFTPWT--SLYKSGDSSSDCYVFDPDFVELGLSADT-DMADHISELNDYPFLTNSDAHSL 191 (374)
T ss_pred cHHHHHHHhhcCCeEEEeCCCCCCcc--cccccccchhhhhcCCCceEEEeccCCH-HHHHHhHHhcCCCeEeecCCCCC
Confidence 66788999999999999999997543 111110 0 112 299999988764 33448888899999999999997
Q ss_pred CCCCCccccCc
Q 020912 214 GGHGESELGSV 224 (320)
Q Consensus 214 ~~~~~~~lG~~ 224 (320)
. +..||.-
T Consensus 192 ~---p~~IGre 199 (374)
T TIGR00375 192 G---PHRLGRE 199 (374)
T ss_pred C---hhHhCCc
Confidence 3 1257764
No 3
>PRK09248 putative hydrolase; Validated
Probab=98.59 E-value=1.6e-07 Score=87.07 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCC---ChHHHHHHHHHcCccEEEEecCcC---------cHHHHHHHHHHcCCceeec
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRSDG---------KLVAYTDLADTYGLLKLGG 207 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~---~~~~~i~~l~~~GldGIEv~~~~~---------~~~~~~~lA~~~~L~~tgG 207 (320)
..+++++.| ++|++.|+|||++.. ....++..+++.|+ +||+.++.. ....+.+++.++|+..|.|
T Consensus 114 ~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~~~g 191 (246)
T PRK09248 114 NTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWVALG 191 (246)
T ss_pred HHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeEEEe
Confidence 357788888 889999999999654 23466778888888 999986531 4577889999999999999
Q ss_pred CCCCCCCCCCCccccC
Q 020912 208 SDYHGRGGHGESELGS 223 (320)
Q Consensus 208 SD~Hg~~~~~~~~lG~ 223 (320)
||+|.+. .+|.
T Consensus 192 SDAH~~~-----~vg~ 202 (246)
T PRK09248 192 SDAHIAF-----DIGN 202 (246)
T ss_pred CCCCChh-----hhcc
Confidence 9999974 5774
No 4
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=98.46 E-value=3.6e-08 Score=110.59 Aligned_cols=163 Identities=21% Similarity=0.313 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNK 80 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~d~~~~~~~~L~~~l~~~~~~R~~r~~~ii~~L~~ 80 (320)
+.|+++|.+++++.||++|+|||+++.+. .+|| +|+++. ..|. +.+.++-.++.
T Consensus 375 v~~~p~a~~~~k~~gikvI~GvE~~~~~~--------~~~i-v~~~~~-----~~L~------------~~~~VVfDLET 428 (1437)
T PRK00448 375 VQAFPEAYNAAKKAGIKVIYGVEANLVDD--------GVPI-VYNEVD-----RDLK------------DATYVVFDVET 428 (1437)
T ss_pred CcCHHHHHHHHHhcCCceEeeeeEEEecc--------ceeE-EecCCc-----hhhc------------cCcEEEEEhhh
Confidence 46899999999999999999999999863 3666 598742 2222 12356667787
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHhhcCCCCc-------------cccCCCCCHHHHHHH
Q 020912 81 LKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA-------------YSTGSEPLAEVAVQL 147 (320)
Q Consensus 81 ~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~~~~af~~~L~~g~p~-------------yv~~~~~~~~e~I~~ 147 (320)
-|++..++++.+++ .++++.|.+. +.|+.|+.++.|. ++. ..++++|+++.
T Consensus 429 TGL~~~~deIIEIg------------AV~V~~G~ii---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~ 492 (1437)
T PRK00448 429 TGLSAVYDEIIEIG------------AVKIKNGEII---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPK 492 (1437)
T ss_pred cCCCCchhhhheee------------eEEEeCCeEe---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHH
Confidence 89988888876543 1334455442 5577777776542 333 67899999999
Q ss_pred HHH-cCCEEEecCCCCCCC--hHHHHH-----HHHHcCccEEEEecCc---CcHHHHHHHHHHcCCcee
Q 020912 148 IHR-TGGLAVLAHPWALKN--PAAIIR-----KLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKL 205 (320)
Q Consensus 148 I~~-aGGiaVlAHP~~~~~--~~~~i~-----~l~~~GldGIEv~~~~---~~~~~~~~lA~~~~L~~t 205 (320)
+++ .||.+++|||..+.. +...++ .+...++|++|+++.. .....+..+|+++|+..+
T Consensus 493 f~~figg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~ 561 (1437)
T PRK00448 493 FKEFCGDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKFGVELE 561 (1437)
T ss_pred HHHHhCCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHcCCCCC
Confidence 999 799999999985432 111111 1234468899987543 245678899999999874
No 5
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=97.43 E-value=8e-05 Score=53.93 Aligned_cols=32 Identities=38% Similarity=0.406 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHcCCceeecCCCCCCCCCCCccccCcc
Q 020912 189 KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK 225 (320)
Q Consensus 189 ~~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~~~ 225 (320)
.+.+..++|+++++++++|||+|.+ ..+|...
T Consensus 3 ~N~~A~~~A~~~~lp~~~gSDAH~~-----~~vG~~~ 34 (56)
T PF13263_consen 3 ANRRAAELAEKYGLPFTGGSDAHFL-----EEVGRGY 34 (56)
T ss_dssp ---HHHHHHHHTT--EEEE--BSSG-----GGTTTTH
T ss_pred HHHHHHHHHHHcCCCeEeEEcccCh-----hhcCCEe
Confidence 3567889999999999999999987 3688764
No 6
>PRK07328 histidinol-phosphatase; Provisional
Probab=96.94 E-value=0.0028 Score=59.57 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHcCCEEEecCCCCCC-----C---h----HHHHHHHHHcCccEEEEecCc--------CcHHHHHHHHHHcCCc
Q 020912 144 AVQLIHRTGGLAVLAHPWALK-----N---P----AAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDLADTYGLL 203 (320)
Q Consensus 144 ~I~~I~~aGGiaVlAHP~~~~-----~---~----~~~i~~l~~~GldGIEv~~~~--------~~~~~~~~lA~~~~L~ 203 (320)
+++++. .|.+-|+|||+... . . +.+++.+++.|+ +||+..+. .....+.++|+++|..
T Consensus 146 ~~~~~~-~~~~dvlgH~d~i~~~~~~~~~~~~~~~~~il~~~~~~g~-~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~ 223 (269)
T PRK07328 146 VEQAAR-SGLFDIIGHPDLIKKFGHRPREDLTELYEEALDVIAAAGL-ALEVNTAGLRKPVGEIYPSPALLRACRERGIP 223 (269)
T ss_pred HHHHHH-cCCCCEeeCccHHHHcCCCCchhHHHHHHHHHHHHHHcCC-EEEEEchhhcCCCCCCCCCHHHHHHHHHcCCC
Confidence 444553 68899999998422 0 1 345566666675 99998642 1346788999999999
Q ss_pred eeecCCCCCCC
Q 020912 204 KLGGSDYHGRG 214 (320)
Q Consensus 204 ~tgGSD~Hg~~ 214 (320)
+|-|||+|.+.
T Consensus 224 itigSDAH~~~ 234 (269)
T PRK07328 224 VVLGSDAHRPE 234 (269)
T ss_pred EEEeCCCCCHH
Confidence 99999999973
No 7
>PRK08392 hypothetical protein; Provisional
Probab=96.86 E-value=0.0033 Score=57.23 Aligned_cols=74 Identities=12% Similarity=0.095 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCEEEecCCCCCC---------ChHHHHHHHHHcCccEEEEecCc-CcHHHHHHHHHHcCCceeecCCCCC
Q 020912 143 VAVQLIHRTGGLAVLAHPWALK---------NPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLGGSDYHG 212 (320)
Q Consensus 143 e~I~~I~~aGGiaVlAHP~~~~---------~~~~~i~~l~~~GldGIEv~~~~-~~~~~~~~lA~~~~L~~tgGSD~Hg 212 (320)
..++++ +.+.+-|+|||+... ....+++.+++.| -.+|+.... .....+.++|+++|..+|-|||+|.
T Consensus 108 ~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH~ 185 (215)
T PRK08392 108 LVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSRYRVPDLEFIRECIKRGIKLTFASDAHR 185 (215)
T ss_pred HHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 344554 558899999997321 1234555566667 599997532 3445678999999999999999999
Q ss_pred CCCCCCccccC
Q 020912 213 RGGHGESELGS 223 (320)
Q Consensus 213 ~~~~~~~~lG~ 223 (320)
+. .+|.
T Consensus 186 ~~-----~vg~ 191 (215)
T PRK08392 186 PE-----DVGN 191 (215)
T ss_pred hH-----HCCc
Confidence 84 5775
No 8
>PRK07945 hypothetical protein; Provisional
Probab=96.80 E-value=0.0028 Score=61.84 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCEEEecCCCCC-------C------ChHHHHHHHHHcCccEEEEecCc---CcHHHHHHHHHHcCCcee
Q 020912 142 EVAVQLIHRTGGLAVLAHPWAL-------K------NPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKL 205 (320)
Q Consensus 142 ~e~I~~I~~aGGiaVlAHP~~~-------~------~~~~~i~~l~~~GldGIEv~~~~---~~~~~~~~lA~~~~L~~t 205 (320)
+..++.+. .+.+-|+|||+.. . ....+++.+++.|+ +||+..+. .....+.++|+++|..+|
T Consensus 211 ~~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~-~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 211 RRMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGT-AVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred HHHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCC-EEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 34455554 5779999999621 0 12456666777775 99998653 356778899999999999
Q ss_pred ecCCCCCCC
Q 020912 206 GGSDYHGRG 214 (320)
Q Consensus 206 gGSD~Hg~~ 214 (320)
-|||+|.+.
T Consensus 289 igSDAH~p~ 297 (335)
T PRK07945 289 IDTDAHAPG 297 (335)
T ss_pred ecCCCCChh
Confidence 999999974
No 9
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=96.69 E-value=0.0038 Score=58.24 Aligned_cols=71 Identities=24% Similarity=0.207 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCEEEecCCCCCC----C--------------hHHHHHHHHHcCccEEEEecCc--------CcHHHHHHH
Q 020912 143 VAVQLIHRTGGLAVLAHPWALK----N--------------PAAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDL 196 (320)
Q Consensus 143 e~I~~I~~aGGiaVlAHP~~~~----~--------------~~~~i~~l~~~GldGIEv~~~~--------~~~~~~~~l 196 (320)
.+.++|.+..-.-|+|||+..+ . .+.+++.+++.|+ +||+..+. .....+.++
T Consensus 146 ~~~~~i~~~~~~dvlgH~Dli~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~g~-~lEiNt~g~r~~~~~~yP~~~il~~ 224 (253)
T TIGR01856 146 SVYDSIQALFKPLVIGHIDLVQKFGPLFTDVSSFSDEVYELLQRILKLVASQGK-ALEFNTSGLRKPLEEAYPSKELLNL 224 (253)
T ss_pred HHHHHHHcCCCCCCcccHhHHHHhCccccccccccHHHHHHHHHHHHHHHHcCC-EEEEEcHhhcCCCCCCCCCHHHHHH
Confidence 3445666643357999997321 1 1345566666675 99998642 134678899
Q ss_pred HHHcCCceeecCCCCCCC
Q 020912 197 ADTYGLLKLGGSDYHGRG 214 (320)
Q Consensus 197 A~~~~L~~tgGSD~Hg~~ 214 (320)
|+++|..+|-|||+|.+.
T Consensus 225 ~~~~g~~itlgSDAH~~~ 242 (253)
T TIGR01856 225 AKELGIPLVLGSDAHGPG 242 (253)
T ss_pred HHHcCCCEEecCCCCCHH
Confidence 999999999999999973
No 10
>PRK06361 hypothetical protein; Provisional
Probab=96.42 E-value=0.0069 Score=54.63 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=46.3
Q ss_pred HcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCc---CcHHHHHHHHHHcCCceeecCCCCCC
Q 020912 150 RTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGR 213 (320)
Q Consensus 150 ~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~---~~~~~~~~lA~~~~L~~tgGSD~Hg~ 213 (320)
+.|-+-|+|||+... ..+++.+++.| ..||+..+. .....+.++|+++|+.++.|||+|.+
T Consensus 110 ~~~~~dvlaHpd~~~--~~~~~~~~~~~-~~lEin~~~~~~~~~~~~l~~a~~~gi~vv~~SDaH~~ 173 (212)
T PRK06361 110 ECEDVDILAHPGLIT--EEEAELAAENG-VFLEITARKGHSLTNGHVARIAREAGAPLVINTDTHAP 173 (212)
T ss_pred hCCCCcEecCcchhh--HHHHHHHHHcC-eEEEEECCCCcccchHHHHHHHHHhCCcEEEECCCCCH
Confidence 577899999998543 34555555555 589997632 24567889999999999999999954
No 11
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=96.32 E-value=0.014 Score=64.88 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNK 80 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~d~~~~~~~~L~~~l~~~~~~R~~r~~~ii~~L~~ 80 (320)
+.|+.++.++|++.||++|+|+|+++.+.. .+..+|+++|..+ ...+++++.-+...+.++. .
T Consensus 46 l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~~hllllAkn-----~~Gy~nL~kL~S~a~~~~~--------~ 108 (1046)
T PRK05672 46 LAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGGPHLLVLARD-----REGYGRLSRLITRARLRAG--------K 108 (1046)
T ss_pred chhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCCceEEEEEcC-----hHHHHHHHHHHHHHHHhCC--------C
Confidence 467899999999999999999999997621 1356899999874 4577777776666554432 3
Q ss_pred CCCCCCHHHHHHHhC
Q 020912 81 LKLPLKWEHVAKIAG 95 (320)
Q Consensus 81 ~G~~i~~eev~~~a~ 95 (320)
.+..++++.+.++..
T Consensus 109 ~~p~i~~e~L~~~~~ 123 (1046)
T PRK05672 109 GEYRLDLDDLAEPAG 123 (1046)
T ss_pred CCccccHHHHHhhcC
Confidence 456789999877643
No 12
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=96.28 E-value=0.012 Score=56.98 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHcCCEEEecCCCCCC-----ChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHcCCceeecCCCCCC
Q 020912 139 PLAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSDYHGR 213 (320)
Q Consensus 139 ~~~~e~I~~I~~aGGiaVlAHP~~~~-----~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD~Hg~ 213 (320)
++-.+..++++..||+..+||-+..+ ..+++-+-+-.+-+|.||.=-|. +..++..+..-+.+.....||+|.+
T Consensus 119 ~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvELGLSA-DtdmAD~I~el~~~pFLtNSDAHSp 197 (403)
T COG1379 119 LTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVELGLSA-DTDMADMIEELHRLPFLTNSDAHSP 197 (403)
T ss_pred ccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHhcccc-CchHHHHHHHhccCCcccccccCCC
Confidence 46678899999999999999976432 22333333333446777765333 2344445555578999999999996
Q ss_pred CCCCCccccC----ccCCHHHHHHHh
Q 020912 214 GGHGESELGS----VKLPVLVLNDFL 235 (320)
Q Consensus 214 ~~~~~~~lG~----~~~p~~~~~~~~ 235 (320)
.. ..+|. +.+++..|+.|+
T Consensus 198 ~p---hrLgREfn~f~v~~~sF~~~r 220 (403)
T COG1379 198 YP---HRLGREFNQFEVEEISFEELR 220 (403)
T ss_pred ch---hhhhhhhheeecccCCHHHHH
Confidence 31 24664 345554444444
No 13
>PRK08123 histidinol-phosphatase; Reviewed
Probab=96.27 E-value=0.012 Score=55.44 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=50.8
Q ss_pred HHHHHHHHcCC---EEEecCCCC---C----C---------ChHHHHHHHHHcCccEEEEecCc---------CcHHHHH
Q 020912 143 VAVQLIHRTGG---LAVLAHPWA---L----K---------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYT 194 (320)
Q Consensus 143 e~I~~I~~aGG---iaVlAHP~~---~----~---------~~~~~i~~l~~~GldGIEv~~~~---------~~~~~~~ 194 (320)
.+.+++.+..+ +-|+|||+. + . ..+.+++.+++.|. +||+..+. .+...+.
T Consensus 157 ~~~~~~~~~~~~~~~dvlgH~Dli~r~~~~~~~~~~~~~~~~~~~il~~~~~~g~-~lEINtsgl~~~~~~~~yP~~~il 235 (270)
T PRK08123 157 TVLQSIEADLGPYKPKRIGHITLVRKFQKLFPPDFDEKNKELIEDILALIKKRGY-ELDFNTAGLRKPYCGEPYPPGEII 235 (270)
T ss_pred HHHHHHHhcccccCCCEeecchHHHHhCccCCcccCHHHHHHHHHHHHHHHHcCC-EEEEEchhhcCCCCCCCCCcHHHH
Confidence 34444444322 569999972 1 1 11355666667775 99998642 1346788
Q ss_pred HHHHHcCCceeecCCCCCCCCCCCccccC
Q 020912 195 DLADTYGLLKLGGSDYHGRGGHGESELGS 223 (320)
Q Consensus 195 ~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~ 223 (320)
++++++|..+|-|||+|.+. .+|.
T Consensus 236 ~~~~e~g~~itlgSDAH~~~-----~vg~ 259 (270)
T PRK08123 236 TLAKKLGIPLVYGSDAHSAA-----DVGR 259 (270)
T ss_pred HHHHHcCCCEEEeCCCCCHH-----HHHh
Confidence 99999999999999999973 5665
No 14
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=96.21 E-value=0.014 Score=53.86 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCEEEecCCCCCC----ChHHHHHHHHHcCccEEEEecCc-----C--------cHHHHHHHHHHcCCce
Q 020912 142 EVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSD-----G--------KLVAYTDLADTYGLLK 204 (320)
Q Consensus 142 ~e~I~~I~~aGGiaVlAHP~~~~----~~~~~i~~l~~~GldGIEv~~~~-----~--------~~~~~~~lA~~~~L~~ 204 (320)
+++...+.+.+++-|++||+..+ ....+++..++.|+ ++|+..+. . ....+.++|+++|..+
T Consensus 92 ~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv-~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~pi 170 (237)
T PRK00912 92 EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNV-AIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPL 170 (237)
T ss_pred HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCe-EEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCE
Confidence 44545678889999999998532 12345555566665 88887652 0 1146789999999999
Q ss_pred eecCCCCCCC
Q 020912 205 LGGSDYHGRG 214 (320)
Q Consensus 205 tgGSD~Hg~~ 214 (320)
+.|||+|.+.
T Consensus 171 iisSdAh~~~ 180 (237)
T PRK00912 171 VLTSGAMSCY 180 (237)
T ss_pred EEeCCCCccc
Confidence 9999999974
No 15
>PRK06740 histidinol-phosphatase; Validated
Probab=96.17 E-value=0.0099 Score=57.90 Aligned_cols=75 Identities=19% Similarity=0.127 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCEEEecCCCCCC-------------ChHHHHHHHHHcCccEEEEecCc---------CcHHHHHHHHHH
Q 020912 142 EVAVQLIHRTGGLAVLAHPWALK-------------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYTDLADT 199 (320)
Q Consensus 142 ~e~I~~I~~aGGiaVlAHP~~~~-------------~~~~~i~~l~~~GldGIEv~~~~---------~~~~~~~~lA~~ 199 (320)
+.++++| +.|-+-|+|||+..+ ....+++.+++.|+ ++|+..+. .....+.+.|++
T Consensus 205 ~~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g~-~lEINt~~~~r~~~~e~yP~~~il~~~~e 282 (331)
T PRK06740 205 KTVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETNT-ATEINAGLYYRYPVREMCPSPLFLQVLAK 282 (331)
T ss_pred HHHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcCC-EEEEECccccCCCCCCCCcCHHHHHHHHH
Confidence 3445555 578899999998321 01234455556665 89998641 134567889999
Q ss_pred cCCceeecCCCCCCCCCCCccccC
Q 020912 200 YGLLKLGGSDYHGRGGHGESELGS 223 (320)
Q Consensus 200 ~~L~~tgGSD~Hg~~~~~~~~lG~ 223 (320)
+|..+|-|||+|.+. .+|.
T Consensus 283 ~Gv~~tlgSDAH~p~-----~VG~ 301 (331)
T PRK06740 283 HEVPITLSSDAHYPN-----DLGK 301 (331)
T ss_pred CCCeEEEeeCCCCHH-----HHHh
Confidence 999999999999984 5765
No 16
>PRK08609 hypothetical protein; Provisional
Probab=95.82 E-value=0.029 Score=58.57 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=47.9
Q ss_pred HHcCCEEEecCCCC-----CC-C---hHHHHHHHHHcCccEEEEecCc---CcHHHHHHHHHHcCCceeecCCCCCCC
Q 020912 149 HRTGGLAVLAHPWA-----LK-N---PAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGRG 214 (320)
Q Consensus 149 ~~aGGiaVlAHP~~-----~~-~---~~~~i~~l~~~GldGIEv~~~~---~~~~~~~~lA~~~~L~~tgGSD~Hg~~ 214 (320)
...|.+.|+|||.. .. . .+.+++.+++.|+ .+|+..+. .....+.+.|.++|+.+|-|||+|.+.
T Consensus 455 ~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~-~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDAH~~~ 531 (570)
T PRK08609 455 CRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNT-ALELNANPNRLDLSAEHLKKAQEAGVKLAINTDAHHTE 531 (570)
T ss_pred hcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCC-EEEEcCCccccCccHHHHHHHHHcCCEEEEECCCCChh
Confidence 34688999999983 11 1 2345555566675 89998653 245678899999999999999999974
No 17
>PRK05588 histidinol-phosphatase; Provisional
Probab=95.54 E-value=0.023 Score=52.83 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCEEEecCCCCCC-------------Ch----HHHHHHHHHcCccEEEEecCcC-------cHHHHHHHHH
Q 020912 143 VAVQLIHRTGGLAVLAHPWALK-------------NP----AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLAD 198 (320)
Q Consensus 143 e~I~~I~~aGGiaVlAHP~~~~-------------~~----~~~i~~l~~~GldGIEv~~~~~-------~~~~~~~lA~ 198 (320)
..++++...+.+-|+|||+..+ .. ..+++.+++.|+ ++|+..+.- ....+.+.+.
T Consensus 128 ~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~il~~~~~~g~-~lEINt~~l~~~~~~~~~~~~l~~~~ 206 (255)
T PRK05588 128 NMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEILKVLIEKEK-VLEINTRRLDDKRSVENLVKIYKRFY 206 (255)
T ss_pred HHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHHHHHHHHcCC-EEEEECcccCCCCCCCCHHHHHHHHH
Confidence 4555666667799999998321 01 344555666675 899976431 2345677888
Q ss_pred HcCCc-eeecCCCCCCCCCCCccccC
Q 020912 199 TYGLL-KLGGSDYHGRGGHGESELGS 223 (320)
Q Consensus 199 ~~~L~-~tgGSD~Hg~~~~~~~~lG~ 223 (320)
+.|.. +|-|||+|.+. .+|.
T Consensus 207 ~~g~~~i~lgSDAH~~~-----~vg~ 227 (255)
T PRK05588 207 ELGGKYITLGSDAHNIE-----DIGN 227 (255)
T ss_pred HcCCcEEEEECCCCCHH-----HHHh
Confidence 88876 79999999973 5664
No 18
>PRK07329 hypothetical protein; Provisional
Probab=95.37 E-value=0.036 Score=51.52 Aligned_cols=72 Identities=25% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCEEEecCCCCC---C-----Ch-------HHHHHHHHHcCccEEEEecCc---C----cHHHHHHHHHH
Q 020912 142 EVAVQLIHRTGGLAVLAHPWAL---K-----NP-------AAIIRKLKDVGLHGLEVYRSD---G----KLVAYTDLADT 199 (320)
Q Consensus 142 ~e~I~~I~~aGGiaVlAHP~~~---~-----~~-------~~~i~~l~~~GldGIEv~~~~---~----~~~~~~~lA~~ 199 (320)
+..++.+...|=+-|+|||+.. . .. +.+++.+++.|+ .+|+..+. . ....+.+.|++
T Consensus 128 ~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~lEiNt~~~~~~~~~~~~~~~l~~~~~ 206 (246)
T PRK07329 128 EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLTRIFAKMIDNDL-AFELNTKSMYLYGNEGLYRYAIELYKQ 206 (246)
T ss_pred HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHHHHHHHHHHcCC-eEEEECcccccCCCCcchHHHHHHHHH
Confidence 3455555555578999999831 0 10 244556666675 89998642 1 22446799999
Q ss_pred cCCc-eeecCCCCCCC
Q 020912 200 YGLL-KLGGSDYHGRG 214 (320)
Q Consensus 200 ~~L~-~tgGSD~Hg~~ 214 (320)
+|.. +|-|||+|.+.
T Consensus 207 ~g~~~i~~gSDAH~~~ 222 (246)
T PRK07329 207 LGGKLFSIGSDAHKLE 222 (246)
T ss_pred cCCeEEEecCCCCCHH
Confidence 9975 89999999974
No 19
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=94.84 E-value=0.04 Score=40.57 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeE
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTI 27 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~ 27 (320)
+.|+.++.+.+++.||++|||+|+++.
T Consensus 40 ~~~~~~~~~~~~~~gi~~i~G~E~~~~ 66 (67)
T smart00481 40 LFGAVEFYKAAKKAGIKPIIGLEANIV 66 (67)
T ss_pred ccCHHHHHHHHHHcCCeEEEEEEEEec
Confidence 467889999999999999999999873
No 20
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=94.68 E-value=0.13 Score=47.86 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCC-----------ChHHHHHHHHHcCccEEEEecCc---CcHHHHHHHHHHcCCcee
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALK-----------NPAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKL 205 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~-----------~~~~~i~~l~~~GldGIEv~~~~---~~~~~~~~lA~~~~L~~t 205 (320)
...+.+...-+.+-+-|+|||+-.. .....++.+.+.| -++|+..+. .......++|+++|...+
T Consensus 112 ~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~aleins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 112 DYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG-KALEINSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred HHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-cEEeecCCcCccCchHHHHHHHHHhCCeEE
Confidence 3455666666678899999998521 1123444444444 488887653 256788899999999999
Q ss_pred ecCCCCCCCCCCCccccCccCC
Q 020912 206 GGSDYHGRGGHGESELGSVKLP 227 (320)
Q Consensus 206 gGSD~Hg~~~~~~~~lG~~~~p 227 (320)
-|||+|.+. .+|.+..+
T Consensus 191 i~tDaH~~~-----~lg~~~~~ 207 (237)
T COG1387 191 IGTDAHRPG-----DLGDMYFG 207 (237)
T ss_pred eecCcCChh-----hcccchHH
Confidence 999999984 68877543
No 21
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=94.00 E-value=0.48 Score=40.21 Aligned_cols=40 Identities=30% Similarity=0.574 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEecc
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 46 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~ 46 (320)
+.|+++..+.+++.||.+++|+|+..... +..+|++-+..
T Consensus 41 ~~~~~~~~~~~~~~~i~vi~G~E~~~~~~------~~~~~~~i~~~ 80 (175)
T PF02811_consen 41 FAGYPDFYKEAKKKGIKVIPGVEIESFER------NDPFDYIIGSV 80 (175)
T ss_dssp TTTHHHHHHHHHHTTSEEEEEEEESHHHH------TTTEEEEEEEG
T ss_pred cccchHHHHHHHhcCCceEEeEeeccccc------cchhHHHHHHh
Confidence 45788899999999999999999943322 45677777654
No 22
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=0.35 Score=44.65 Aligned_cols=76 Identities=20% Similarity=0.206 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCCC---hHHHHHHHHHcCccEEEEecCc------CcHHHHHHHHHHcCCceeecCCCC
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSD------GKLVAYTDLADTYGLLKLGGSDYH 211 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~~---~~~~i~~l~~~GldGIEv~~~~------~~~~~~~~lA~~~~L~~tgGSD~H 211 (320)
..++.=-+..-|=++|+|||.|+.. ....+.+|++.|.-- -|..++ ...++....--+.+|.-.-+||+|
T Consensus 118 a~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~s-Qvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASDAH 196 (254)
T COG4464 118 ADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAYS-QVTSSSLAGLFGKKIKKFALQLIEANLVHFIASDAH 196 (254)
T ss_pred HHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccce-eechHhHHhhhhHHHHHHHHHHHHcccceeeecccc
Confidence 4566777788899999999998752 246788888877421 111121 123333333357899999999999
Q ss_pred CCCCCC
Q 020912 212 GRGGHG 217 (320)
Q Consensus 212 g~~~~~ 217 (320)
..+.++
T Consensus 197 n~~~R~ 202 (254)
T COG4464 197 NVDKRP 202 (254)
T ss_pred ccCCCC
Confidence 986654
No 23
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=89.51 E-value=0.65 Score=51.51 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEec
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYY 45 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~ 45 (320)
|.|+.++.++|++.||+.|+|+|+++.+ ..+|+|+++
T Consensus 44 l~G~~~f~~~a~~~gIkpIiG~Ei~~~~--------~~l~LLAkn 80 (973)
T PRK07135 44 MFGVPKFYKLCKKNNIKPIIGLDLEVEN--------FRFILLAKN 80 (973)
T ss_pred HHhHHHHHHHHHHcCCeEEEeEEEEecC--------cEEEEEECC
Confidence 4688999999999999999999998863 579999985
No 24
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=85.12 E-value=2.8 Score=40.00 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHcC-CEEEecCCCC------CC-ChHHHHHHHHHcCccEEEEec--CcCc-----HHHHHHHHHHcC
Q 020912 137 SEPLAEVAVQLIHRTG-GLAVLAHPWA------LK-NPAAIIRKLKDVGLHGLEVYR--SDGK-----LVAYTDLADTYG 201 (320)
Q Consensus 137 ~~~~~~e~I~~I~~aG-GiaVlAHP~~------~~-~~~~~i~~l~~~GldGIEv~~--~~~~-----~~~~~~lA~~~~ 201 (320)
...+++|+|+-.++-| ||.+..|=.. +. ..+..++.+.+.|+.||=+-. +..+ ...+.+-|.+|+
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence 4578999999999998 7888888644 11 246788889999999999843 3322 245567778999
Q ss_pred CceeecCCCCCCCCC
Q 020912 202 LLKLGGSDYHGRGGH 216 (320)
Q Consensus 202 L~~tgGSD~Hg~~~~ 216 (320)
|++ ||||+.+|
T Consensus 151 Lmv----nfHg~~kP 161 (273)
T PF10566_consen 151 LMV----NFHGATKP 161 (273)
T ss_dssp -EE----EETTS---
T ss_pred cEE----EecCCcCC
Confidence 999 99998654
No 25
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=72.07 E-value=2 Score=40.35 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHcCCEEEecCCCCCCC---hH-HHHHHHHHcCccEEEEecCcC----cHHHHHHHHHHcCCceeecC
Q 020912 137 SEPLAEVAVQLIHRTGGLAVLAHPWALKN---PA-AIIRKLKDVGLHGLEVYRSDG----KLVAYTDLADTYGLLKLGGS 208 (320)
Q Consensus 137 ~~~~~~e~I~~I~~aGGiaVlAHP~~~~~---~~-~~i~~l~~~GldGIEv~~~~~----~~~~~~~lA~~~~L~~tgGS 208 (320)
.....++.++.|+..++.++..||+.... .. ...+.. .-.+.+|.+|++. .+.++.+.+..|+....++|
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h--~~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~ 173 (258)
T COG0613 96 QQLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAH--IARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADS 173 (258)
T ss_pred ccccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhh--hhhhhhccccccchHHHHHHHHhccCcccCcccccCH
Confidence 44678999999999999999999984211 11 112222 1368999999875 35677788889999999999
Q ss_pred CCCCC
Q 020912 209 DYHGR 213 (320)
Q Consensus 209 D~Hg~ 213 (320)
|.|-.
T Consensus 174 ~~~i~ 178 (258)
T COG0613 174 EAHVG 178 (258)
T ss_pred HHHHH
Confidence 99954
No 26
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=69.77 E-value=9.9 Score=37.49 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHcCC-EEE----ecCCCCCCChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHcC--CceeecC
Q 020912 139 PLAEVAVQLIHRTGG-LAV----LAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGS 208 (320)
Q Consensus 139 ~~~~e~I~~I~~aGG-iaV----lAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~~--L~~tgGS 208 (320)
..++++|+..|++|- +-| +.|+.........++.+.+.|+|+|++-.+. +..++++.+ |.+..+.
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg-----~i~l~~e~~p~l~ih~S~ 120 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPG-----LIMLARERGPDLPIHVST 120 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHH-----HHHHHHHhCCCCcEEEee
Confidence 458899999999998 333 2344333333578889999999999998754 667777766 7665543
No 27
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=67.66 E-value=20 Score=40.84 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccC-C-CCCCccEEEEEeccCCCCCChHHHHHHHH
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEEPVHILAYYSSCGPSKYEELENFLA 61 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~-~-~~~g~~vHILGY~~d~~~~~~~~L~~~l~ 61 (320)
|.|+.++.+.|++.||++|.|+|+++.+..+ + ...+...|++-|-- +...+++++.
T Consensus 43 l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~~~~l~llAk-----n~~Gy~nL~k 100 (1135)
T PRK05673 43 LFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGAYTHLTLLAK-----NETGYRNLFK 100 (1135)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccCCCceEEEec-----CHHHHHHHHH
Confidence 4578899999999999999999999986421 0 00123468888864 3455555543
No 28
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=67.32 E-value=6.2 Score=45.05 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEec
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFC 29 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~ 29 (320)
+.|++++.+++++.||++|+|||+++...
T Consensus 145 ~~~~~~~~~~~~~~~ikvI~GvE~~~~~d 173 (1213)
T TIGR01405 145 VQAFPEAYKAAKKDGIKIIYGMEANLVDD 173 (1213)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEEEEeecc
Confidence 46899999999999999999999999754
No 29
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=65.82 E-value=13 Score=33.99 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCccEEEEecCcC-cHHHHHHHHHHcCCceeec
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLGG 207 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~~-~~~~~~~lA~~~~L~~tgG 207 (320)
..+.++.+.+.|++|||.+.+.. ....+.++++++||-+++-
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 46788888899999999987543 4667888999999988764
No 30
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.87 E-value=45 Score=31.29 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCC--------HHHHHHHhhcCCCCccccCCCCC
Q 020912 69 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN--------LKQAFARYLYDGGPAYSTGSEPL 140 (320)
Q Consensus 69 ~r~~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~--------~~~af~~~L~~g~p~yv~~~~~~ 140 (320)
+...++++.|.+.|.++ ++-|+.-+ ++.+..+-|.+| .+
T Consensus 24 ~~~~~~~~~l~~~Gad~------------------------iElGiPfsDP~aDGpvIq~a~~~al~~G---------~~ 70 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADA------------------------LELGVPFSDPLADGPTIQAADLRALRAG---------MT 70 (256)
T ss_pred HHHHHHHHHHHHcCCCE------------------------EEECCCCCCCCCcCHHHHHHHHHHHHcC---------CC
Q ss_pred HHHHHHHHHHcC----CEEEecCCCCCCCh------HHHHHHHHHcCccEEEEec-CcCcHHHHHHHHHHcCC
Q 020912 141 AEVAVQLIHRTG----GLAVLAHPWALKNP------AAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 202 (320)
Q Consensus 141 ~~e~I~~I~~aG----GiaVlAHP~~~~~~------~~~i~~l~~~GldGIEv~~-~~~~~~~~~~lA~~~~L 202 (320)
++++.+.+++.- .+++. |- .+.++ +..++.++++|+||+=+.. +..+...+.+.++++|+
T Consensus 71 ~~~~~~~v~~ir~~~~~~plv-~m-~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl 141 (256)
T TIGR00262 71 PEKCFELLKKVRQKHPNIPIG-LL-TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGV 141 (256)
T ss_pred HHHHHHHHHHHHhcCCCCCEE-EE-EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCC
No 31
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=63.75 E-value=18 Score=33.30 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcCccEEEEecCcC-cHHHHHHHHHHcCCceee
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG 206 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~~-~~~~~~~lA~~~~L~~tg 206 (320)
..+.++.+.+.|++|||+..+.. ..+.+.++.+++||-+|+
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 46788899999999999976543 667888999999999876
No 32
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=61.73 E-value=13 Score=34.90 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCEEEecCCCC--------CCChHHHHHHHHHcCccEEEEecCcC-----cHHHHHHHHHHcCCce
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 204 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~--------~~~~~~~i~~l~~~GldGIEv~~~~~-----~~~~~~~lA~~~~L~~ 204 (320)
+.+-|++.|++| |.|. |+- ....+..++..++.|++.||+....- +...+.+.+++.|+.+
T Consensus 56 l~eki~l~~~~g-V~v~--~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 56 LKEKIDLAHSHG-VYVY--PGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp HHHHHHHHHCTT--EEE--E-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE
T ss_pred HHHHHHHHHHcC-CeEe--CCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE
Confidence 789999999998 4333 431 12356888999999999999998753 3356778888888755
No 33
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=61.42 E-value=21 Score=39.58 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCC-CCCccEEEEEecc
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-ESEEPVHILAYYS 46 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~-~~g~~vHILGY~~ 46 (320)
|.|+.++.++|++.||+.|+|+|+++....... ..+...|++-|--
T Consensus 44 ~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~~~~lvLLAk 90 (874)
T PRK09532 44 MYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRRKYHQVVLAK 90 (874)
T ss_pred hhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccccceeEEEec
Confidence 468889999999999999999999987431100 0123468887754
No 34
>PRK05473 hypothetical protein; Provisional
Probab=60.28 E-value=26 Score=27.75 Aligned_cols=31 Identities=32% Similarity=0.440 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHhhcCCCCccccCC
Q 020912 105 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 137 (320)
Q Consensus 105 iA~~Lv~~G~~~~~~~af~~~L~~g~p~yv~~~ 137 (320)
+..+|.++||-+- .-.--||-+|.|+|+|..
T Consensus 27 Vy~AL~EKGYNPi--nQiVGYllSGDPaYItsh 57 (86)
T PRK05473 27 VYDALEEKGYNPI--NQIVGYLLSGDPAYIPRH 57 (86)
T ss_pred HHHHHHHcCCChH--HHHHhhhccCCCCccCCc
Confidence 5667778887432 333478888999999843
No 35
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=60.27 E-value=17 Score=28.40 Aligned_cols=30 Identities=37% Similarity=0.495 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHhhcCCCCccccC
Q 020912 105 VARAMVEAGHVENLKQAFARYLYDGGPAYSTG 136 (320)
Q Consensus 105 iA~~Lv~~G~~~~~~~af~~~L~~g~p~yv~~ 136 (320)
+.++|-++||-+- .-.--||-+|.|+|++.
T Consensus 24 Vy~AL~EKGYnPi--nQivGYllSGDPaYIts 53 (79)
T PF06135_consen 24 VYAALEEKGYNPI--NQIVGYLLSGDPAYITS 53 (79)
T ss_pred HHHHHHHcCCChH--HHHHhheecCCCccccC
Confidence 5667778887433 33347888999999984
No 36
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=58.23 E-value=68 Score=30.58 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=27.0
Q ss_pred hHHHHHHHHHcCccEEEEec-CcCcHHHHHHHHHHcCC
Q 020912 166 PAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 202 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~-~~~~~~~~~~lA~~~~L 202 (320)
.+.+++++++.|+||+=+-. |.++...+.+.|++||+
T Consensus 111 ie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 111 IEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred HHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCC
Confidence 35678888899999987764 33455677888888875
No 37
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=57.98 E-value=39 Score=31.16 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCc-CcHHHHHHHHHHcC
Q 020912 142 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 201 (320)
Q Consensus 142 ~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~-~~~~~~~~lA~~~~ 201 (320)
.++....+..+=|+|+.+...- .-..+...|.+-|++.||+-... .-.+....+++++.
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~e-~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p 63 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDVE-EALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP 63 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCHH-HHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc
Confidence 4677788888999999986421 12356677889999999997654 34455566666665
No 38
>PRK09989 hypothetical protein; Provisional
Probab=55.56 E-value=25 Score=32.36 Aligned_cols=41 Identities=7% Similarity=-0.056 Sum_probs=32.2
Q ss_pred hHHHHHHHHHcCccEEEEecCc-CcHHHHHHHHHHcCCceee
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLG 206 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~-~~~~~~~~lA~~~~L~~tg 206 (320)
..+.++.+.++|+||||+..+. .....+.++.+++||-+++
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 3567888889999999986543 3567788889999998875
No 39
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=53.65 E-value=75 Score=29.66 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCC-----------------ChHHHHHH---HHHcCccEEEEecCcCcHHHHHHHHHHc
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALK-----------------NPAAIIRK---LKDVGLHGLEVYRSDGKLVAYTDLADTY 200 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~-----------------~~~~~i~~---l~~~GldGIEv~~~~~~~~~~~~lA~~~ 200 (320)
..+.|+.+++++ ++|.||-+... ..++.+++ +.++|.|+|-+-.. +.+...+++++.
T Consensus 114 ~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~i~~~~ 190 (240)
T cd06556 114 HIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQITEAL 190 (240)
T ss_pred HHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHhC
Confidence 446788888887 99999987521 02344443 55789999877644 567777888888
Q ss_pred CCcee---ecCCCCCC
Q 020912 201 GLLKL---GGSDYHGR 213 (320)
Q Consensus 201 ~L~~t---gGSD~Hg~ 213 (320)
+.+.. +|+++.|.
T Consensus 191 ~~P~~~~gag~~~dgq 206 (240)
T cd06556 191 AIPLAGIGAGSGTDGQ 206 (240)
T ss_pred CCCEEEEecCcCCCce
Confidence 86654 56777763
No 40
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=53.60 E-value=15 Score=28.94 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHcCC
Q 020912 99 APGRLHVARAMVEAGH 114 (320)
Q Consensus 99 ~~gR~hiA~~Lv~~G~ 114 (320)
.+...|+|+.||+.-|
T Consensus 50 ip~~sh~ArvLVeADy 65 (84)
T PF07643_consen 50 IPADSHFARVLVEADY 65 (84)
T ss_pred cCCccHHHHHHHHhhh
Confidence 4677899999998643
No 41
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.49 E-value=38 Score=31.15 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=33.9
Q ss_pred hHHHHHHHHHcCccEEEEecCc----------CcHHHHHHHHHHcCCceeecCCCC
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSD----------GKLVAYTDLADTYGLLKLGGSDYH 211 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~----------~~~~~~~~lA~~~~L~~tgGSD~H 211 (320)
+.+.++.+.++|+++||++... ...+.+.++++++||-+++.+-.|
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~ 70 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPET 70 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcc
Confidence 5688888999999999996321 135677889999999887644333
No 42
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=53.31 E-value=19 Score=26.66 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCC
Q 020912 72 KDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 116 (320)
Q Consensus 72 ~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~ 116 (320)
.-|.+...+.|++-+..|+.+..+-...-+-.+..++|.++||+.
T Consensus 13 ~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 13 EFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 444556667899999999988776331122345567788899874
No 43
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=53.26 E-value=1e+02 Score=29.16 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCC--------HHHHHHHhhcCCCCccccCCCC
Q 020912 68 FLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN--------LKQAFARYLYDGGPAYSTGSEP 139 (320)
Q Consensus 68 ~~r~~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~--------~~~af~~~L~~g~p~yv~~~~~ 139 (320)
.+...+++..|.+.|.++ ++-|+.-+ ++.+..+-|.+| .
T Consensus 28 ~~~~~~~~~~l~~~Gad~------------------------iElGiPfSDP~aDGpvIq~a~~rAL~~g---------~ 74 (263)
T CHL00200 28 IVITKKALKILDKKGADI------------------------IELGIPYSDPLADGPIIQEASNRALKQG---------I 74 (263)
T ss_pred HHHHHHHHHHHHHCCCCE------------------------EEECCCCCCCCccCHHHHHHHHHHHHcC---------C
Q ss_pred CHHHHHHHHHHcC-------CEEEecCCCCCCChHHHHHHHHHcCccEEEEec-CcCcHHHHHHHHHHcCC
Q 020912 140 LAEVAVQLIHRTG-------GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 202 (320)
Q Consensus 140 ~~~e~I~~I~~aG-------GiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~-~~~~~~~~~~lA~~~~L 202 (320)
+++++.+++++.- -+.....|......+.++++++++|+||+=+.. |.++...+.+.|+++|+
T Consensus 75 ~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi 145 (263)
T CHL00200 75 NLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNI 145 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCC
No 44
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=52.39 E-value=43 Score=31.40 Aligned_cols=61 Identities=11% Similarity=0.244 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCEEEecCCCC--------CCChHHHHHHHHHcCccEEEEecCcC-----cHHHHHHHHHHcCCce
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWA--------LKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 204 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~--------~~~~~~~i~~l~~~GldGIEv~~~~~-----~~~~~~~lA~~~~L~~ 204 (320)
+.|.|++.|++| |.|. |+- ....+..++..++.|++.||+....- +...+.+.++++||.+
T Consensus 43 l~eki~la~~~~-V~v~--~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 43 VKEKIEMYKDYG-IKVY--PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHHHHHcC-CeEe--CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 778888888877 3333 331 11245778889999999999998752 3457788888888765
No 45
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.64 E-value=1.2e+02 Score=28.55 Aligned_cols=58 Identities=12% Similarity=-0.029 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHcCCEEEecCCCCCC-ChHHHHHHHHHcCccEEEEecCcCcHHHHHHHH
Q 020912 139 PLAEVAVQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLA 197 (320)
Q Consensus 139 ~~~~e~I~~I~~aGGiaVlAHP~~~~-~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA 197 (320)
..++..++...++|---++- |+... ....++..+.+.|++-|=...+....+++..++
T Consensus 104 ~G~e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~ 162 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLII-PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIA 162 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 46667777777776433332 43221 123455556667777775444544334444444
No 46
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.38 E-value=52 Score=37.17 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccC-C----CCCCccEEEEEeccCCCCCChHHHHHHHH
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQR-G----SESEEPVHILAYYSSCGPSKYEELENFLA 61 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~-~----~~~g~~vHILGY~~d~~~~~~~~L~~~l~ 61 (320)
|.|+.++.++|++.||++|.|+|+++...++ + ...+...|++-|-- +...+++++.
T Consensus 42 l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~~~~~~~l~llAk-----n~~Gy~nL~k 102 (1022)
T TIGR00594 42 MFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISKGKEAYHLILLAK-----NNTGYRNLMK 102 (1022)
T ss_pred chhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccccCCCccEEEEeC-----CHHHHHHHHH
Confidence 4578899999999999999999999976321 0 00122468888854 3455555543
No 47
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=48.06 E-value=37 Score=33.69 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHcCCEEE--ecCCC
Q 020912 138 EPLAEVAVQLIHRTGGLAV--LAHPW 161 (320)
Q Consensus 138 ~~~~~e~I~~I~~aGGiaV--lAHP~ 161 (320)
-+....+.+.||+.|+.++ |+|++
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~G 107 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAG 107 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCc
Confidence 3467789999999999655 68887
No 48
>PLN02591 tryptophan synthase
Probab=45.87 E-value=1.3e+02 Score=28.24 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHcCCEEEecCCCCC-CChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHH
Q 020912 139 PLAEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLAD 198 (320)
Q Consensus 139 ~~~~e~I~~I~~aGGiaVlAHP~~~-~~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~ 198 (320)
...+..++..+++|---|+- |+.. .....+...+.+.|++=|=+..|.....++..+|+
T Consensus 93 ~G~~~F~~~~~~aGv~Gvii-pDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~ 152 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVV-PDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAE 152 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH
Confidence 45666777777776433333 2211 11234555566677777777766654444444443
No 49
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=44.98 E-value=2e+02 Score=24.85 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHhhcCCCCc
Q 020912 53 YEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPA 132 (320)
Q Consensus 53 ~~~L~~~l~~~~~~R~~r~~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~~~~af~~~L~~g~p~ 132 (320)
...|+.+++.++..+.++..--+++=--.-+||+++||...|- +.+.++-..++..
T Consensus 58 ~~~l~~Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~VAm------------------------~ei~~~~~~~~~~ 113 (137)
T PF10788_consen 58 QKSLQNLIESLKNAQKENFELKLEKDILQQMPIDFEDVWAVAM------------------------DEIKKMRQKDGNL 113 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH------------------------HHHHHHHhcCCCc
Confidence 4678899999999999888777665555579999999986542 2223444444332
Q ss_pred cccCCCCCHHHHHHHHHH
Q 020912 133 YSTGSEPLAEVAVQLIHR 150 (320)
Q Consensus 133 yv~~~~~~~~e~I~~I~~ 150 (320)
..+++...|+-|+.
T Consensus 114 ----~~id~~~lvk~IKk 127 (137)
T PF10788_consen 114 ----PNIDLDKLVKNIKK 127 (137)
T ss_pred ----CCCCHHHHHHHHHH
Confidence 45788888888886
No 50
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=44.48 E-value=1e+02 Score=35.40 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=36.2
Q ss_pred CCHHHHHHHHhhcCCeEeeeeEEEeEeccCCC----CCCccEEEEEeccCCCCCChHHHHHHH
Q 020912 2 SGIPEAIETARRFGMKIIPGVEISTIFCQRGS----ESEEPVHILAYYSSCGPSKYEELENFL 60 (320)
Q Consensus 2 ~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~----~~g~~vHILGY~~d~~~~~~~~L~~~l 60 (320)
.|+.++.+.|++.||.+|+|+|+.+....+.. ......|++-|--+ ...+++++
T Consensus 47 ~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~~~~~~l~lLAkn-----~~Gy~nL~ 104 (1151)
T PRK06826 47 YGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEPDIDNETYHLVLLAKN-----ETGYKNLM 104 (1151)
T ss_pred HhHHHHHHHHHhCCCEEEEEEEEEecCCccccccccccCCCceEEEEEcC-----cHHHHHHH
Confidence 47888999999999999999999986431100 00123588888643 34555554
No 51
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.20 E-value=1.2e+02 Score=28.29 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCcC--cHHHHHHHHHHcCCceeecCCCCCCCCCCCc
Q 020912 142 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLLKLGGSDYHGRGGHGES 219 (320)
Q Consensus 142 ~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~--~~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~ 219 (320)
.|+.+.|.+++|++|..-+. ..++.|...|..-|=+..|+- -++.-.++-..+|+-+ -||-+.+-..+.
T Consensus 88 ~ei~~~ie~~~~v~vvTts~------Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfei---v~~~~Lgi~dn~ 158 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTST------AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEI---VDFKGLGITDNL 158 (238)
T ss_pred HHHHHHHHhccCCceeechH------HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEE---EEeeccCCcccc
Confidence 46667777777777776432 455666666777776666652 3455556666677665 356665555556
Q ss_pred cccCcc
Q 020912 220 ELGSVK 225 (320)
Q Consensus 220 ~lG~~~ 225 (320)
++|...
T Consensus 159 eigr~~ 164 (238)
T COG3473 159 EIGRQE 164 (238)
T ss_pred hhcccC
Confidence 666653
No 52
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=42.43 E-value=58 Score=30.10 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=30.1
Q ss_pred hHHHHHHHHHcCccEEEEecCc------------CcHHHHHHHHHHcCCceee
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 206 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~------------~~~~~~~~lA~~~~L~~tg 206 (320)
..+.++.+.++|++|||+.... .....+.+.++++||-+++
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 4677888888999999996421 1245677888999997654
No 53
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=40.09 E-value=48 Score=32.09 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=31.2
Q ss_pred CCCCCC--ChHHHHHHHHHcCccEEEEecC------c---------CcHHHHHHHHHHcCCcee
Q 020912 159 HPWALK--NPAAIIRKLKDVGLHGLEVYRS------D---------GKLVAYTDLADTYGLLKL 205 (320)
Q Consensus 159 HP~~~~--~~~~~i~~l~~~GldGIEv~~~------~---------~~~~~~~~lA~~~~L~~t 205 (320)
|++|.. .....+..++++|+..|++|-+ . .+...+.++|+++||.+.
T Consensus 17 hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 17 HYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp -GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred ccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 666653 2467888999999999999842 1 135788999999999653
No 54
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.45 E-value=64 Score=25.34 Aligned_cols=31 Identities=29% Similarity=0.421 Sum_probs=19.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHhhcCCCCccccCC
Q 020912 105 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGS 137 (320)
Q Consensus 105 iA~~Lv~~G~~~~~~~af~~~L~~g~p~yv~~~ 137 (320)
+...|-++||-. -+-.--|+-+|.|+|+|..
T Consensus 27 VY~sL~ekGYNp--iNQiVGYllSGDPaYIpr~ 57 (88)
T COG4472 27 VYNSLEEKGYNP--INQIVGYLLSGDPAYIPRY 57 (88)
T ss_pred HHHHHHHcCCCh--HHHHHhhhccCCccccCcc
Confidence 345556677632 2223467888889999854
No 55
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=38.51 E-value=17 Score=35.46 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCE-EEecCCCCC
Q 020912 141 AEVAVQLIHRTGGL-AVLAHPWAL 163 (320)
Q Consensus 141 ~~e~I~~I~~aGGi-aVlAHP~~~ 163 (320)
.++.++.|.+.||+ -|-+||...
T Consensus 204 ~D~qlkaI~~~gGvIgv~~~~~fl 227 (313)
T COG2355 204 SDEQLKAIAETGGVIGVNFIPAFL 227 (313)
T ss_pred CHHHHHHHHhcCCEEEEEeehhhc
Confidence 36788999999995 677888543
No 56
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=38.43 E-value=2.3e+02 Score=26.78 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHcCCEEEecCCCC-CCChHHHHHHHHHcCccEEEEecC
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRS 186 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~-~~~~~~~i~~l~~~GldGIEv~~~ 186 (320)
.+.++++.|+++-.++|...-.. ......+.+.+.+.|+|||.+.|.
T Consensus 144 ~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 144 LAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINT 191 (301)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcc
Confidence 35788899998866777775431 112335666777899999988653
No 57
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=36.44 E-value=1.8e+02 Score=26.61 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCCC-hHHHHHHHHHcC
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALKN-PAAIIRKLKDVG 177 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~~-~~~~i~~l~~~G 177 (320)
+++..++....+|.-.|.-|...... +...++.+++.|
T Consensus 76 ~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G 114 (228)
T PTZ00170 76 NPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAG 114 (228)
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC
Confidence 35555566666665555555543322 334445555555
No 58
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.22 E-value=1.2e+02 Score=27.79 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCcC-cHHHHHHHHHHcC
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYG 201 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~-~~~~~~~lA~~~~ 201 (320)
..++++.+.+.+=++|+-++... ....+.+.+.+.|++.||+-.... -.+.+.++.+++.
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~~-~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p 65 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKLE-DAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP 65 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCHH-HHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC
Confidence 34667888888989999876421 123567778888999999985543 3445556666555
No 59
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=35.66 E-value=1e+02 Score=33.29 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEE
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGL 181 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGI 181 (320)
+.+.|+++|++|=-|..--=+..-..++..+.+++.||||+
T Consensus 292 ak~lvd~~H~~GkeAmmFlgD~WIGtEPy~~~F~~iGlDav 332 (719)
T TIGR02336 292 AKELVDMSHAAGKEAMMFLGDQWIGTEPYKDGFDEIGLDAV 332 (719)
T ss_pred HHHHHHHHHhcCceEEEeccCceeccccchhhhhhcCcceE
Confidence 57899999999976554211110012466778889999995
No 60
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=35.47 E-value=77 Score=29.16 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=26.4
Q ss_pred hHHHHHHHHHcCccEEEEecCc------------CcHHHHHHHHHHcCCceee
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 206 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~------------~~~~~~~~lA~~~~L~~tg 206 (320)
+.+.++...++|+++||+.-.. .....+.+.++++||-+++
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 3566777777788888875211 1245667788888886653
No 61
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=35.38 E-value=82 Score=29.80 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCC-ChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHH
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALK-NPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLAD 198 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~-~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~ 198 (320)
+++-++...++|--.++- |+... ....+.+.+.+.|++-|=...|.....++..+++
T Consensus 104 ~e~F~~~~~~aGvdGlIi-pDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~ 161 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLII-PDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAK 161 (259)
T ss_dssp HHHHHHHHHHHTEEEEEE-TTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEE-cCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence 455555555554222222 33221 1223444445567766666666554455555543
No 62
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.40 E-value=2.5e+02 Score=25.73 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHcCCceeecCC
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 209 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~~L~~tgGSD 209 (320)
.++.-|+....+|.=.|.-|......+..++..+++.|+..-=+.+|..+...+..+....+++...+.+
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVN 138 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEec
Confidence 4677888888888888888887655556777888888877766778877777777788777876665554
No 63
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.15 E-value=1.5e+02 Score=25.90 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=6.6
Q ss_pred HHHHHcCCEEEecCC
Q 020912 146 QLIHRTGGLAVLAHP 160 (320)
Q Consensus 146 ~~I~~aGGiaVlAHP 160 (320)
+...++|+=.+..|.
T Consensus 71 ~~~~~aGad~i~~h~ 85 (202)
T cd04726 71 EMAFKAGADIVTVLG 85 (202)
T ss_pred HHHHhcCCCEEEEEe
Confidence 344444444444443
No 64
>PLN02905 beta-amylase
Probab=32.88 E-value=85 Score=33.60 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCccEEEE--ecCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCC
Q 020912 167 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGG 215 (320)
Q Consensus 167 ~~~i~~l~~~GldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~ 215 (320)
...+..|+.+|+|||+| |+.-- + -+.+.+++++.||-.-.==-||..+.
T Consensus 289 ~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 289 LKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 35567788999999987 44321 1 25667888999987666666997653
No 65
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.72 E-value=2.1e+02 Score=26.32 Aligned_cols=67 Identities=12% Similarity=0.022 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHcCCEEEecC--CC-CCCChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHcCCce
Q 020912 138 EPLAEVAVQLIHRTGGLAVLAH--PW-ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLK 204 (320)
Q Consensus 138 ~~~~~e~I~~I~~aGGiaVlAH--P~-~~~~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~~L~~ 204 (320)
...+++-++...++|.-.|+-| |. .......+++.+.+.|++.+=+.+|......+..+++.-..+.
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l 156 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFI 156 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEE
Confidence 3477888899999988777777 32 1223456778888999999999998876667777776555443
No 66
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.62 E-value=1.1e+02 Score=29.70 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHcCCEEEe
Q 020912 140 LAEVAVQLIHRTGGLAVL 157 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVl 157 (320)
....+++.||+.|+.+++
T Consensus 83 ~~~~l~~~vh~~G~~~~~ 100 (338)
T cd04733 83 AFREWAAAAKANGALIWA 100 (338)
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 456777888888876544
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.51 E-value=47 Score=28.46 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=27.4
Q ss_pred HHHHHcCccEEEEecCcC--------cHHHHHHHHHHcCCceee
Q 020912 171 RKLKDVGLHGLEVYRSDG--------KLVAYTDLADTYGLLKLG 206 (320)
Q Consensus 171 ~~l~~~GldGIEv~~~~~--------~~~~~~~lA~~~~L~~tg 206 (320)
+.+.++|+++||+..... ....+.++++++|+-+++
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEE
Confidence 456789999999986432 246788999999998543
No 68
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=32.50 E-value=1.1e+02 Score=34.63 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEeccCCCCCChHHHHHHHH
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLA 61 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~d~~~~~~~~L~~~l~ 61 (320)
|-|+.++..+|++.||.-|-|+|+..... +...|++-|-- +....++++.
T Consensus 43 m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~------~~~~~lvlLAk-----N~~GY~nL~k 92 (1034)
T PRK07279 43 LYGAYHFIEGAQKNGLQPILGLELNIFVE------EQEVTLRLIAK-----NTQGYKNLLK 92 (1034)
T ss_pred cccHHHHHHHHHHcCCcEEEEEEEEEecC------CCcceEEEEEC-----CHHHHHHHHH
Confidence 45889999999999999999999988653 24579988864 3445555543
No 69
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.36 E-value=1.5e+02 Score=27.09 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCcC-cHHHHHHHHHHc----CCceeec
Q 020912 143 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTY----GLLKLGG 207 (320)
Q Consensus 143 e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~-~~~~~~~lA~~~----~L~~tgG 207 (320)
++++.+...+=++|+...... ....+.+.|.+.|+.-+|+-.... -.+.+.++++++ ++++-.|
T Consensus 5 ~~~~~l~~~~vi~vir~~~~~-~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG 73 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESKE-EALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG 73 (213)
T ss_pred HHHHHHHHCCEEEEEECCCHH-HHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee
Confidence 467888889989999876421 224677778899999999986553 446677777777 3555444
No 70
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=30.72 E-value=94 Score=35.71 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCC---CCCccEEEEEecc
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGS---ESEEPVHILAYYS 46 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~---~~g~~vHILGY~~ 46 (320)
|.|+.++.++|++.||+.|.|+|+......+.. ..+...|++-|--
T Consensus 44 l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~~~~~~l~LLAk 92 (1170)
T PRK07374 44 MYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKKEKRYHLVVLAK 92 (1170)
T ss_pred hHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccccccceEEEEEe
Confidence 357889999999999999999999876421000 0112368888864
No 71
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=30.63 E-value=2.5e+02 Score=27.40 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCC-----EEEecCCCCCCC---hHHHHHHHHHcCccEEEEecCc
Q 020912 140 LAEVAVQLIHRTGG-----LAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRSD 187 (320)
Q Consensus 140 ~~~e~I~~I~~aGG-----iaVlAHP~~~~~---~~~~i~~l~~~GldGIEv~~~~ 187 (320)
.+.++++.|+++=+ ++|++--..... ...+.+.+.+.|+|||.+.+..
T Consensus 193 ~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 193 ALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 45678888888744 788775432111 2355666778899999999853
No 72
>PLN02161 beta-amylase
Probab=30.61 E-value=1.7e+02 Score=30.55 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCccEEEE--ecCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCC
Q 020912 167 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGG 215 (320)
Q Consensus 167 ~~~i~~l~~~GldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~ 215 (320)
...+..|+.+|+|||+| |...- + -+.+.+++++.||-.-.==-||..+.
T Consensus 120 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 120 TVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 45677889999999987 44321 1 25667888999987666666997643
No 73
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=30.55 E-value=1.1e+02 Score=29.82 Aligned_cols=66 Identities=14% Similarity=0.326 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHcC--CceeecCC
Q 020912 139 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 209 (320)
Q Consensus 139 ~~~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~~--L~~tgGSD 209 (320)
|...++++.|++.||+++.-|+.-. ....++.+.+.|+|++-+.+...+.. +..++++ +..-|+=|
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~~~dl~---eak~~~g~k~~l~GNlD 265 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMTANNTA---ELRRLLGDKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCCCCCHH---HHHHHhCCCeEEEcCCC
Confidence 4457899999999888888898643 33678889999999998865443333 3333344 44444433
No 74
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=30.45 E-value=1.8e+02 Score=27.31 Aligned_cols=124 Identities=12% Similarity=0.055 Sum_probs=67.2
Q ss_pred CeEeeeeEEEeEeccCCCCCCccEEEEEeccCCCCCChHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCCCC
Q 020912 16 MKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGR----------FLRAKDMILKLNKLKLPL 85 (320)
Q Consensus 16 I~vIpGVEIS~~~~~~~~~~g~~vHILGY~~d~~~~~~~~L~~~l~~~~~~R----------~~r~~~ii~~L~~~G~~i 85 (320)
++-|.||=|+-+ ..+|+=.|-+. .-++.++++|+++ .+..+.+.++|+++|+++
T Consensus 4 ~~~v~gvLlDlS---------GtLh~e~~avp-------ga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v 67 (262)
T KOG3040|consen 4 GRAVKGVLLDLS---------GTLHIEDAAVP-------GAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV 67 (262)
T ss_pred ccccceEEEecc---------ceEecccccCC-------CHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc
Confidence 345667766654 36888887542 1235566665333 234467889999999999
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCC------HHHHHHHhhcCCCCccccC---C---CCCHHHHHHHHHHcC-
Q 020912 86 KWEHVAKIAGKGVAPGRLHVARAMVEAGHVEN------LKQAFARYLYDGGPAYSTG---S---EPLAEVAVQLIHRTG- 152 (320)
Q Consensus 86 ~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~------~~~af~~~L~~g~p~yv~~---~---~~~~~e~I~~I~~aG- 152 (320)
+.+|+.. .-+..++++.+.++-.- ..+-|+..=.+...|-|-. + +-.+-+|.+++.+.-
T Consensus 68 ~eeei~t--------sl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k 139 (262)
T KOG3040|consen 68 SEEEIFT--------SLPAARQYLEENQLRPYLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKK 139 (262)
T ss_pred cHHHhcC--------ccHHHHHHHHhcCCCceEEEcccchhhCCCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCC
Confidence 9999842 22345566666554322 1233332222232333311 1 122445666666553
Q ss_pred CEEEecCCCCC
Q 020912 153 GLAVLAHPWAL 163 (320)
Q Consensus 153 GiaVlAHP~~~ 163 (320)
-..|.-|-++|
T Consensus 140 ~~LIai~kgry 150 (262)
T KOG3040|consen 140 PLLIAIGKGRY 150 (262)
T ss_pred CeEEEecCcee
Confidence 45555565554
No 75
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=29.70 E-value=1.3e+02 Score=29.35 Aligned_cols=23 Identities=35% Similarity=0.325 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHcCCEEE--ecCCCC
Q 020912 140 LAEVAVQLIHRTGGLAV--LAHPWA 162 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaV--lAHP~~ 162 (320)
...++++.||+.|+.++ |.|+++
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCC
Confidence 55678888999888654 467764
No 76
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=29.65 E-value=2.9e+02 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=12.8
Q ss_pred HHHHHcCCEEEecCCCC
Q 020912 146 QLIHRTGGLAVLAHPWA 162 (320)
Q Consensus 146 ~~I~~aGGiaVlAHP~~ 162 (320)
.++|-++++.|.++|..
T Consensus 110 ga~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 110 GAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 34577888899998863
No 77
>PLN00197 beta-amylase; Provisional
Probab=29.63 E-value=1.1e+02 Score=32.33 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=42.1
Q ss_pred ecCCCCCCChHHHHHHHHHcCccEEEE--ecCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC
Q 020912 157 LAHPWALKNPAAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS 223 (320)
Q Consensus 157 lAHP~~~~~~~~~i~~l~~~GldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~ 223 (320)
+.||.. ....+..|+.+|+|||+| |...- + -+.+.+++++.||-.-.==-||..+. .+|.
T Consensus 123 l~~~~~---l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqCGG----NVGD 195 (573)
T PLN00197 123 VNRRKA---MKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQCGG----NVGD 195 (573)
T ss_pred ccCHHH---HHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCC
Confidence 555532 345677889999999987 44321 1 25667889999997666666997653 3554
Q ss_pred -ccCC
Q 020912 224 -VKLP 227 (320)
Q Consensus 224 -~~~p 227 (320)
+.||
T Consensus 196 ~~~Ip 200 (573)
T PLN00197 196 SCTIP 200 (573)
T ss_pred ccccc
Confidence 3445
No 78
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=29.56 E-value=5e+02 Score=24.70 Aligned_cols=130 Identities=18% Similarity=0.120 Sum_probs=69.1
Q ss_pred ccEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCC
Q 020912 37 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 116 (320)
Q Consensus 37 ~~vHILGY~~d~~~~~~~~L~~~l~~~~~~R~~r~~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~ 116 (320)
+.||+|.=-.+.+ .+..... .--.+..+...+++.+.|+.+.+|-+-...-.+..+++..-|.+||+.=-.+
T Consensus 100 ~~vh~mag~~p~~-~~~~~~~-------~t~venLr~aAd~l~~~gi~~liEplN~~d~PG~~l~~~~~al~li~~V~~~ 171 (260)
T COG3622 100 KQVHCLAGIPPEG-VDTEAMW-------ATFVENLRYAADLLAAEGIRLLIEPLNLRDMPGYFLTSQEQALALIDEVGRP 171 (260)
T ss_pred CceeeeecCCCCC-ccHHHHH-------HHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCcccccHHHHHHHHHHhCCC
Confidence 6799888544322 1222221 1123344556778888999988887644333344566777788888643233
Q ss_pred CHH---HHHHHhhcCCCCccccCCCCCHHHHHHHHHHcCC----EEEecCCCCCC------ChHHHHHHHHHcCcc---E
Q 020912 117 NLK---QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGG----LAVLAHPWALK------NPAAIIRKLKDVGLH---G 180 (320)
Q Consensus 117 ~~~---~af~~~L~~g~p~yv~~~~~~~~e~I~~I~~aGG----iaVlAHP~~~~------~~~~~i~~l~~~Gld---G 180 (320)
|+. +.|..-+..| +.+++++..-+ |=|.--|+|.. |..-+.+.|.++|.+ |
T Consensus 172 Nl~lq~D~YH~Q~~eG-------------nL~~~lr~~~~~ighvQiAdvP~RhEPgtGEINY~~lf~~l~~~GY~GwIG 238 (260)
T COG3622 172 NLFLQLDLYHAQIMEG-------------NLTRLLREYLPKIGHVQIADVPGRHEPGTGEINYPYLFKALDAMGYDGWIG 238 (260)
T ss_pred CeEeehhHHHHHHhcc-------------HHHHHHHHhhhhhceeeecCCCCCCCCCCCccccHHHHHHHHHcCCCCcee
Confidence 432 2232333333 34555555533 33333465531 334566777777655 5
Q ss_pred EEEecCcC
Q 020912 181 LEVYRSDG 188 (320)
Q Consensus 181 IEv~~~~~ 188 (320)
.|.. |..
T Consensus 239 cEy~-p~g 245 (260)
T COG3622 239 CEYK-PRG 245 (260)
T ss_pred eeec-cCC
Confidence 5644 443
No 79
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=29.49 E-value=3.5e+02 Score=25.41 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCCEEEecCCCCC-CChHHHHHHHHHcCccEEEEec
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYR 185 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~-~~~~~~i~~l~~~GldGIEv~~ 185 (320)
+.++++.|+++-+++|.+--... .....+.+.+.+.|+|+|.+.+
T Consensus 145 ~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 145 SADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred HHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 46788888887667777643211 1223556667789999999875
No 80
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=28.84 E-value=1.9e+02 Score=26.83 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCCccccCCC--CCHHHHHHHHHHcCCEE---EecCCCCCCChHHHHHHHHHcC----ccEEEEec-----CcC-cHHHH
Q 020912 129 GGPAYSTGSE--PLAEVAVQLIHRTGGLA---VLAHPWALKNPAAIIRKLKDVG----LHGLEVYR-----SDG-KLVAY 193 (320)
Q Consensus 129 g~p~yv~~~~--~~~~e~I~~I~~aGGia---VlAHP~~~~~~~~~i~~l~~~G----ldGIEv~~-----~~~-~~~~~ 193 (320)
+.|..+.... ....++++.++..|-.. |++|+++.... ..+.++++.| ++|.=.+. +.. ..+.+
T Consensus 149 ~~Pv~iH~~~~~~~~~~~l~~l~~~g~~~~~~vi~H~~~~~~~-~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~l 227 (293)
T cd00530 149 GVPISTHTQAGLTMGLEQLRILEEEGVDPSKVVIGHLDRNDDP-DYLLKIAALGAYLEFDGIGKDKIFGYPSDETRADAV 227 (293)
T ss_pred CCeEEEcCCCCccccHHHHHHHHHcCCChhheEEeCCCCCCCH-HHHHHHHhCCCEEEeCCCCcccccCCCCHHHHHHHH
Confidence 4455443222 36788999999886443 89999865543 5677777777 33322221 111 22345
Q ss_pred HHHHHHcCC-ceeecCCCCCC
Q 020912 194 TDLADTYGL-LKLGGSDYHGR 213 (320)
Q Consensus 194 ~~lA~~~~L-~~tgGSD~Hg~ 213 (320)
.+++++-.+ -++-+||.|..
T Consensus 228 ~~~~~~~~~d~ill~TD~p~~ 248 (293)
T cd00530 228 KALIDEGYGDRLLLSHDVFRK 248 (293)
T ss_pred HHHHHCCCcCCEEEeCCcCch
Confidence 555554322 22559999985
No 81
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=28.64 E-value=94 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=28.7
Q ss_pred CHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEecc
Q 020912 3 GIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 46 (320)
Q Consensus 3 Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~ 46 (320)
.+.++.+.|+++|-+-|-||-+++. . + -+++||-
T Consensus 30 Al~eM~e~A~~lGAnAVVGvr~d~s-~------~---eV~ayGT 63 (74)
T TIGR03884 30 IVENLREKVKAKGGMGLIAFRITCA-D------G---KFLGYGT 63 (74)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEEcC-C------C---EEEEEEE
Confidence 3678889999999999999999997 3 3 6899983
No 82
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=28.61 E-value=87 Score=29.94 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHc--CCceeecCCCC
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY--GLLKLGGSDYH 211 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~--~L~~tgGSD~H 211 (320)
...++++.||..|+-.+.-|..-. ....++.+.+.|+|++.+-+... . .+.++++ +....||=|-+
T Consensus 221 ~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~~~-~---~~~~~~~~~~~~l~Gni~~~ 288 (343)
T PF01208_consen 221 YLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEKVD-L---AEAKRKLGDKIVLMGNIDPV 288 (343)
T ss_dssp HHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TTS--H---HHHHHHHTTSSEEEEEB-G-
T ss_pred HHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCCCC-H---HHHHHHhCCCeEEECCCCcc
Confidence 457899999999974666787632 33578888999999999754432 2 2333343 67777776664
No 83
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=28.23 E-value=1.4e+02 Score=29.13 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=9.8
Q ss_pred HHHcCccEEEEec
Q 020912 173 LKDVGLHGLEVYR 185 (320)
Q Consensus 173 l~~~GldGIEv~~ 185 (320)
.+++|+||||+.-
T Consensus 161 a~~aGfDgVeih~ 173 (338)
T cd02933 161 AIEAGFDGVEIHG 173 (338)
T ss_pred HHHcCCCEEEEcc
Confidence 4456999999963
No 84
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=28.22 E-value=3.8e+02 Score=26.81 Aligned_cols=78 Identities=13% Similarity=0.014 Sum_probs=54.8
Q ss_pred hcCCCCccccCCCCCHHHHHHHHHHcCCEEEecCCCCC-CC-hHHHHHHHHHcCccEEEEecCc---CcHHHHHHHHHHc
Q 020912 126 LYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL-KN-PAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTY 200 (320)
Q Consensus 126 L~~g~p~yv~~~~~~~~e~I~~I~~aGGiaVlAHP~~~-~~-~~~~i~~l~~~GldGIEv~~~~---~~~~~~~~lA~~~ 200 (320)
+++|....+| -.+.-.....|-..|+.+|.+-.+.. .+ ....++..+.-...+|=..|-. .+++.+.++|++|
T Consensus 71 ig~GDeVI~p--s~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~ 148 (374)
T COG0399 71 IGPGDEVIVP--SFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRH 148 (374)
T ss_pred CCCCCEEEec--CCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHc
Confidence 5666666665 35777788999999999999977632 22 2345555444446777666543 3789999999999
Q ss_pred CCcee
Q 020912 201 GLLKL 205 (320)
Q Consensus 201 ~L~~t 205 (320)
||.+.
T Consensus 149 ~l~vI 153 (374)
T COG0399 149 GLPVI 153 (374)
T ss_pred CCeEE
Confidence 99774
No 85
>PRK08392 hypothetical protein; Provisional
Probab=27.46 E-value=64 Score=29.04 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=18.1
Q ss_pred HHHHHHHhhcCCeEeeeeEEEeEe
Q 020912 5 PEAIETARRFGMKIIPGVEISTIF 28 (320)
Q Consensus 5 ~ea~~~a~~~GI~vIpGVEIS~~~ 28 (320)
.++.++.++.+|+++.|+|+++..
T Consensus 50 ~~i~~l~~~~~i~il~GiE~~~~~ 73 (215)
T PRK08392 50 NEIRQWGEESEIVVLAGIEANITP 73 (215)
T ss_pred HHHHHHhhccCceEEEeEEeeecC
Confidence 455555566789999999998753
No 86
>PLN02705 beta-amylase
Probab=26.82 E-value=1e+02 Score=32.92 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=38.0
Q ss_pred HHHHHHHHcCccEEEE--ecCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-ccCC
Q 020912 168 AIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 227 (320)
Q Consensus 168 ~~i~~l~~~GldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 227 (320)
..+..|+.+|+|||+| |+..- + -+.+.+++++.||-.-.==-||..+. .+|. +.||
T Consensus 272 a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGG----NVGD~~~IP 341 (681)
T PLN02705 272 QELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGG----NASGNVMIS 341 (681)
T ss_pred HHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCC----CCCCccccc
Confidence 4567788999999987 44321 1 25667888999997666666997653 3553 4444
No 87
>PRK08309 short chain dehydrogenase; Provisional
Probab=26.70 E-value=37 Score=29.92 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.8
Q ss_pred hcccChhhhhhhHHHHHHhhhccccc
Q 020912 292 SLWLTNEERQSAEFEAIKLKLSHVSI 317 (320)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (320)
|.|||++|.-+-=+++|+.+.+..++
T Consensus 146 ~rwlt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 146 SRWLTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred cccCchHHHHHHHHHHHhcCCCeEEE
Confidence 57999999999999999999876654
No 88
>PLN02801 beta-amylase
Probab=26.42 E-value=2.2e+02 Score=29.73 Aligned_cols=57 Identities=25% Similarity=0.520 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCccEEEE--ecCc------C-----cHHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-ccCC
Q 020912 167 AAIIRKLKDVGLHGLEV--YRSD------G-----KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 227 (320)
Q Consensus 167 ~~~i~~l~~~GldGIEv--~~~~------~-----~~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 227 (320)
...+..|+.+|+|||+| +... . --+.+.+++++.||-.-.==-||..+. .+|. +.||
T Consensus 40 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG----NVGD~~~Ip 110 (517)
T PLN02801 40 EKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFHQCGG----NVGDAVNIP 110 (517)
T ss_pred HHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCccccc
Confidence 45677899999999997 3432 1 125667888999997766666997653 3554 3444
No 89
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=26.29 E-value=2.4e+02 Score=25.12 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHcCCEEEecCCCCC---CChHHHHHHHHHcC-ccEEEEecCcCcHHHHHHHHHHcCCce
Q 020912 137 SEPLAEVAVQLIHRTGGLAVLAHPWAL---KNPAAIIRKLKDVG-LHGLEVYRSDGKLVAYTDLADTYGLLK 204 (320)
Q Consensus 137 ~~~~~~e~I~~I~~aGGiaVlAHP~~~---~~~~~~i~~l~~~G-ldGIEv~~~~~~~~~~~~lA~~~~L~~ 204 (320)
+-.++.+.++.+|++| ..|+-|.+.. ......++.|++.+ .|||=-.+ ....+.|++.||+.
T Consensus 29 ~I~~l~~~v~~~~~~g-K~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIISTk-----~~~i~~Ak~~gl~t 94 (175)
T PF04309_consen 29 DIGNLKDIVKRLKAAG-KKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIISTK-----SNLIKRAKKLGLLT 94 (175)
T ss_dssp ECCCHHHHHHHHHHTT--EEEEECCGEETB-SSHHHHHHHHHTT--SEEEESS-----HHHHHHHHHTT-EE
T ss_pred cHHHHHHHHHHHHHcC-CEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeCC-----HHHHHHHHHcCCEE
Confidence 4568899999999987 5666687643 23356788888877 99975443 34778899999876
No 90
>PLN02803 beta-amylase
Probab=26.00 E-value=1.3e+02 Score=31.44 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCccEEEE--ecCcC--------c---HHHHHHHHHHcCCceeecCCCCCCCCCCCccccC-ccCC
Q 020912 167 AAIIRKLKDVGLHGLEV--YRSDG--------K---LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS-VKLP 227 (320)
Q Consensus 167 ~~~i~~l~~~GldGIEv--~~~~~--------~---~~~~~~lA~~~~L~~tgGSD~Hg~~~~~~~~lG~-~~~p 227 (320)
...+..|+.+|+|||+| |...- + -+.+.+++++.||-.-.==-||..+. .+|. +.||
T Consensus 110 ~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGG----NVGD~~~Ip 180 (548)
T PLN02803 110 NASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGG----NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCC----CCCCccccc
Confidence 35677889999999987 44321 1 25667889999997766667997653 3554 3444
No 91
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=25.51 E-value=1.1e+02 Score=30.49 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.5
Q ss_pred hHHHHHHHHHcCccEEEEec----CcC-c-------HHHHHHHHHHcCCceee
Q 020912 166 PAAIIRKLKDVGLHGLEVYR----SDG-K-------LVAYTDLADTYGLLKLG 206 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~----~~~-~-------~~~~~~lA~~~~L~~tg 206 (320)
+.+.+..+.++|++|||++. |.. . ...+.+.++++||-+++
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 45778888899999999873 221 1 24677888999997543
No 92
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=25.23 E-value=1.8e+02 Score=28.33 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHcCCEEE--ecCCCC
Q 020912 140 LAEVAVQLIHRTGGLAV--LAHPWA 162 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaV--lAHP~~ 162 (320)
...++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~QL~h~G~ 102 (353)
T cd02930 78 GHRLITDAVHAEGGKIALQILHAGR 102 (353)
T ss_pred HHHHHHHHHHHcCCEEEeeccCCCC
Confidence 56788899999988653 577664
No 93
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=24.93 E-value=2.3e+02 Score=32.53 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEeccCCCCCChHHHHHHH
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFL 60 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~d~~~~~~~~L~~~l 60 (320)
|.|+-++...|++.||+.|.|+|+......+. ......|++-|--+ ....++++
T Consensus 45 l~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~~~~l~llAkn-----~~GY~nL~ 98 (1139)
T COG0587 45 LYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRERPHLLLLAKN-----NEGYKNLV 98 (1139)
T ss_pred ceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccCCccEEEEeCC-----HHHHHHHH
Confidence 45788999999999999999999888754211 11356999999653 44555554
No 94
>PRK15447 putative protease; Provisional
Probab=24.84 E-value=2.1e+02 Score=27.40 Aligned_cols=61 Identities=16% Similarity=0.029 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHcCCEEEecCCCCCC-C-hHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHcCCce
Q 020912 139 PLAEVAVQLIHRTGGLAVLAHPWALK-N-PAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLK 204 (320)
Q Consensus 139 ~~~~e~I~~I~~aGGiaVlAHP~~~~-~-~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~~L~~ 204 (320)
-++.++|+.+|++|--+++|=|.-.. . ....+..+.+.+.++|.|.+.. ...++++.++.+
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g-----~l~~~~e~~~~l 110 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLG-----AVRLLAERGLPF 110 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHH-----HHHHHHhcCCCE
Confidence 45778999999999888887776422 1 1244556677799999987644 445666655554
No 95
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.69 E-value=2.2e+02 Score=26.48 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHc--CCEEEecCCCCCCC------hHHHHHHHHHcCccEEEEec-CcCcHHHHHHHHHHcCC
Q 020912 139 PLAEVAVQLIHRT--GGLAVLAHPWALKN------PAAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 202 (320)
Q Consensus 139 ~~~~e~I~~I~~a--GGiaVlAHP~~~~~------~~~~i~~l~~~GldGIEv~~-~~~~~~~~~~lA~~~~L 202 (320)
.++..+++.++.+ -|+.++---+.|.+ .+..+...+++|..|+=+.. |.++...+++.|+++++
T Consensus 77 ~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gi 149 (268)
T KOG4175|consen 77 TTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGI 149 (268)
T ss_pred CcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCc
Confidence 3555666666655 34444332223332 13566667777888876654 34566777778877775
No 96
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=23.78 E-value=1.2e+02 Score=29.29 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCcc
Q 020912 167 AAIIRKLKDVGLH 179 (320)
Q Consensus 167 ~~~i~~l~~~Gld 179 (320)
.+.++.|+++|++
T Consensus 141 ~e~l~~LkeAGl~ 153 (343)
T TIGR03551 141 EEALKRLKEAGLD 153 (343)
T ss_pred HHHHHHHHHhCcc
Confidence 4556666666666
No 97
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.76 E-value=1.7e+02 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=9.8
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 020912 72 KDMILKLNKLKLPLKWEHV 90 (320)
Q Consensus 72 ~~ii~~L~~~G~~i~~eev 90 (320)
+.+.++|+++|++++.+++
T Consensus 45 ~~~~~~L~~~Gi~~~~~~i 63 (101)
T PF13344_consen 45 EEYAKKLKKLGIPVDEDEI 63 (101)
T ss_dssp HHHHHHHHHTTTT--GGGE
T ss_pred HHHHHHHHhcCcCCCcCEE
Confidence 4555566666666655544
No 98
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=23.54 E-value=2.5e+02 Score=25.96 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=54.4
Q ss_pred HHHHHhhcCCCCccccCCCCCHHHHHHHHHHcCCEEEecCCCCCC---ChHHHHHHHHHcCccEEEEecCc-------C-
Q 020912 120 QAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK---NPAAIIRKLKDVGLHGLEVYRSD-------G- 188 (320)
Q Consensus 120 ~af~~~L~~g~p~yv~~~~~~~~e~I~~I~~aGGiaVlAHP~~~~---~~~~~i~~l~~~GldGIEv~~~~-------~- 188 (320)
.+..+| ...--||..... .+...+-+. +|=||+||+... ..+.++..+....=-+||..-+. .
T Consensus 75 ~~V~k~--~~~vv~V~GGd~---~vNR~AvE~-~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~plL~~~G~~R 148 (216)
T PRK03892 75 EVKQRF--LNYLIYVQGGDL---RVNRYAIER-GVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSPLLRANPYER 148 (216)
T ss_pred HHHHhc--cceEEEEECCcH---HHHHHHHhc-ccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHHHHhhCchhH
Confidence 334455 233446654433 344444555 799999998532 25677777665544588885321 1
Q ss_pred -----cHHHHHHHHHHcCCceeecCCCCC
Q 020912 189 -----KLVAYTDLADTYGLLKLGGSDYHG 212 (320)
Q Consensus 189 -----~~~~~~~lA~~~~L~~tgGSD~Hg 212 (320)
..+....++++|+.+.+-.|++..
T Consensus 149 ar~L~~~r~~l~L~rKYd~P~VISS~A~s 177 (216)
T PRK03892 149 ANILRFMMKAWQLVNKYKVPRFITSSAES 177 (216)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCcch
Confidence 235667999999999888888764
No 99
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=23.36 E-value=3.4e+02 Score=25.56 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCC-------------Ch----HHHHH---HHHHcCccEEEEecCcCcHHHHHHHHHHc
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALK-------------NP----AAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTY 200 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~-------------~~----~~~i~---~l~~~GldGIEv~~~~~~~~~~~~lA~~~ 200 (320)
..+.|+.+.++| ++|.+|.+... .. +.+++ .+.++|.|+|.+-... .....+++++.
T Consensus 116 ~~~~I~al~~ag-ipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~--~~~~~~i~~~v 192 (254)
T cd06557 116 VAETIRALVDAG-IPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP--AELAKEITEAL 192 (254)
T ss_pred HHHHHHHHHHcC-CCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HHHHHHHHHhC
Confidence 345666666555 99999987321 11 23333 3557899999876653 35788889999
Q ss_pred CCcee---ecCCCCCCCCCCCccccCcc-CCHHHHHHHhcccccccchHHHHHHhhhcCCCC
Q 020912 201 GLLKL---GGSDYHGRGGHGESELGSVK-LPVLVLNDFLKVARPIWCGAIKEILESYADEPS 258 (320)
Q Consensus 201 ~L~~t---gGSD~Hg~~~~~~~~lG~~~-~p~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 258 (320)
.++.. +|+++.|.----..-+|... .+...++.+.+. ...+.+.+++|.++..
T Consensus 193 ~iP~igiGaG~~~dgqvlv~~D~lG~~~~~~p~f~k~~~~~-----~~~~~~a~~~y~~~v~ 249 (254)
T cd06557 193 SIPTIGIGAGPDCDGQVLVWHDMLGLSPGFKPKFVKRYADL-----GELIREAVKAYVEEVK 249 (254)
T ss_pred CCCEEEeccCCCCCceeehHHhhcCCCCCCCCCcHHHHhhh-----HHHHHHHHHHHHHHHh
Confidence 98877 68888873211112356542 122233333321 1356777788877653
No 100
>PRK08508 biotin synthase; Provisional
Probab=23.20 E-value=2.6e+02 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=21.8
Q ss_pred HHHHHHHHHcC-CEEEecCCCCCCChHHHHHHHHHcCccEEE
Q 020912 142 EVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLE 182 (320)
Q Consensus 142 ~e~I~~I~~aG-GiaVlAHP~~~~~~~~~i~~l~~~GldGIE 182 (320)
.++++.|++.+ ++.+.+=.+.. ..+.++.|+++|+|.+=
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~--~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTA--SVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CHHHHHHHHHcCCCEEc
Confidence 45666666665 55554433222 24666777777776543
No 101
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=23.13 E-value=1.1e+02 Score=33.00 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEE
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLE 182 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIE 182 (320)
+.+.|+++|++|=-|..--=+..-..++..+.+.+.|+||+=
T Consensus 289 akelVDivH~~GKeAmMFlGD~WIGtEPyg~~F~~iGlDaVV 330 (716)
T PF09508_consen 289 AKELVDIVHEYGKEAMMFLGDHWIGTEPYGKYFKSIGLDAVV 330 (716)
T ss_dssp HHHHHHHHHHTT-EEEEESSSSBTTT-TTSTTGGGG---EEE
T ss_pred HHHHHHHHHhcCCeEEEecCCceeecccchhhhhhcCcceEe
Confidence 578999999999766543111111124555678888999953
No 102
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.05 E-value=2e+02 Score=28.06 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHcCCEEE--ecCCCC
Q 020912 140 LAEVAVQLIHRTGGLAV--LAHPWA 162 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaV--lAHP~~ 162 (320)
...++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~l~~~vh~~g~~~~~Ql~H~G~ 102 (343)
T cd04734 78 GFRRLAEAVHAHGAVIMIQLTHLGR 102 (343)
T ss_pred HHHHHHHHHHhcCCeEEEeccCCCc
Confidence 34567788888876543 456553
No 103
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=22.93 E-value=72 Score=21.96 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCC
Q 020912 69 LRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 116 (320)
Q Consensus 69 ~r~~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~ 116 (320)
+|+-.+++.|...+-+++..++.+..+-+. ..=..+.+.|++.||+.
T Consensus 3 ~ral~iL~~l~~~~~~~t~~eia~~~gl~~-stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 3 ERALRILEALAESGGPLTLSEIARALGLPK-STVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHHHHHHCHHCTBSCEEHHHHHHHHTS-H-HHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCcCH-HHHHHHHHHHHHCcCee
Confidence 577888898888888888999987765221 11233555666788763
No 104
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.68 E-value=5.7e+02 Score=24.41 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=48.5
Q ss_pred CCEEEecCCCCCCCh--HHHHHHHHHcCccEEEEecCcC-------cHHHHHHHHHHc-CCceeecCCCCCCCCCCCccc
Q 020912 152 GGLAVLAHPWALKNP--AAIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADTY-GLLKLGGSDYHGRGGHGESEL 221 (320)
Q Consensus 152 GGiaVlAHP~~~~~~--~~~i~~l~~~GldGIEv~~~~~-------~~~~~~~lA~~~-~L~~tgGSD~Hg~~~~~~~~l 221 (320)
|.++|++|....... ..+.+...+.|.||+=+..|.. -..++..+|+.- ++.+.- ||-|. ..
T Consensus 76 grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~i---Yn~P~-----~t 147 (309)
T cd00952 76 GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAI---YANPE-----AF 147 (309)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEE---EcCch-----hc
Confidence 459999999764421 2444556678999999986642 136777888866 455432 55442 22
Q ss_pred cCccCCHHHHHHHhc
Q 020912 222 GSVKLPVLVLNDFLK 236 (320)
Q Consensus 222 G~~~~p~~~~~~~~~ 236 (320)
| +.+|.+.+..+.+
T Consensus 148 g-~~l~~~~l~~L~~ 161 (309)
T cd00952 148 K-FDFPRAAWAELAQ 161 (309)
T ss_pred C-CCCCHHHHHHHhc
Confidence 3 4677777777764
No 105
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.55 E-value=2e+02 Score=26.22 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=34.7
Q ss_pred HHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCc-CcHHHHHHHHHHcC
Q 020912 146 QLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 201 (320)
Q Consensus 146 ~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~-~~~~~~~~lA~~~~ 201 (320)
+.+...+=++|+-..... ......+.|.+.|++.||+-... +-.+...++.+++.
T Consensus 3 ~~l~~~~liaVlr~~~~e-~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~ 58 (204)
T TIGR01182 3 ELLREAKIVPVIRIDDVD-DALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVP 58 (204)
T ss_pred hHHhhCCEEEEEecCCHH-HHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCC
Confidence 456667777888655321 12356677888899999997644 33345556665554
No 106
>PRK04051 rps4p 30S ribosomal protein S4P; Validated
Probab=22.13 E-value=2e+02 Score=25.77 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCC---CCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHhhcCC
Q 020912 67 RFLRAKDMILKLNKLKLP---LKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDG 129 (320)
Q Consensus 67 R~~r~~~ii~~L~~~G~~---i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~~~~af~~~L~~g 129 (320)
|......++++|..+|+- -++++|++..-. .+-+.-+-..|++.|++.++.+| ..++..|
T Consensus 66 r~~~~~~Ll~kL~~~Gil~~~~~L~~vl~L~v~--~~lerRLd~il~r~gla~S~~~A-r~lI~hG 128 (177)
T PRK04051 66 RAKEEEQLLGKLKRYGILKENATLDDVLSLTVE--DILERRLQTIVYRKGLARTPKQA-RQFIVHG 128 (177)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHhccHH--HHHHhHHHHHHHHccCcCCHHHH-HHHHHcC
Confidence 344557778888888873 345555433211 01122234467788888887777 3555544
No 107
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.91 E-value=4.9e+02 Score=25.07 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHHHHHcCCEEEecCCCC-CCChHHHHHHHHHcCccEEEEecCc
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWA-LKNPAAIIRKLKDVGLHGLEVYRSD 187 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~-~~~~~~~i~~l~~~GldGIEv~~~~ 187 (320)
..++++.|+++=.++|++--.. ......+.+.+.+.|+|||.+.+..
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~ 200 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRF 200 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCc
Confidence 4577788888777888887211 1123466677778999999998753
No 108
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.76 E-value=2.1e+02 Score=19.63 Aligned_cols=28 Identities=25% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 020912 57 ENFLANIRDGRFLRAKDMILKLNKLKLP 84 (320)
Q Consensus 57 ~~~l~~~~~~R~~r~~~ii~~L~~~G~~ 84 (320)
+++|+++-+.-+.-.+++.+-|+.-|+|
T Consensus 18 ESLLdrItRklr~gwKRl~~iLnQpGvP 45 (45)
T PF02061_consen 18 ESLLDRITRKLRDGWKRLWDILNQPGVP 45 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3567777666667778888888877764
No 109
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.75 E-value=5e+02 Score=22.01 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHhhcCCCCccccCCCCCHHHHHHHHHHc
Q 020912 72 KDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRT 151 (320)
Q Consensus 72 ~~ii~~L~~~G~~i~~eev~~~a~~~~~~gR~hiA~~Lv~~G~~~~~~~af~~~L~~g~p~yv~~~~~~~~e~I~~I~~a 151 (320)
..+.+.|++.|+.++ +-|.-|+++|.+.+-.-+..+.+++....+.+ ....++..++++..++
T Consensus 6 ~~~~~~lk~~glr~T-------------~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~----islaTVYr~L~~l~e~ 68 (145)
T COG0735 6 EDAIERLKEAGLRLT-------------PQRLAVLELLLEADGHLSAEELYEELREEGPG----ISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHHHHcCCCcC-------------HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCC----CCHhHHHHHHHHHHHC
Confidence 345566777777764 45666778877654334555555554443321 1234555566666666
Q ss_pred CCEEEecCC
Q 020912 152 GGLAVLAHP 160 (320)
Q Consensus 152 GGiaVlAHP 160 (320)
|=|-.++-.
T Consensus 69 Glv~~~~~~ 77 (145)
T COG0735 69 GLVHRLEFE 77 (145)
T ss_pred CCEEEEEeC
Confidence 655554443
No 110
>PRK15452 putative protease; Provisional
Probab=21.72 E-value=1.6e+02 Score=30.13 Aligned_cols=66 Identities=6% Similarity=-0.097 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCC-----ChHHHHHHHHHcCccEEEEecCcCcHHHHHHHHHHc--CCceeecCCC
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALK-----NPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY--GLLKLGGSDY 210 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~-----~~~~~i~~l~~~GldGIEv~~~~~~~~~~~~lA~~~--~L~~tgGSD~ 210 (320)
.++++|+..|..|--..++=|-... .....+..+.+.|+|||=|-++. ...+++++ ++.+.+++-.
T Consensus 47 dl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G-----~l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 47 NLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPG-----LIMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred HHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHH-----HHHHHHHhCCCCeEEEEecc
Confidence 4778999999999877776553222 12345677778999999887644 45666664 5555444443
No 111
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=21.59 E-value=3.9e+02 Score=25.36 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=64.5
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCC-------------C----hHHHHHH---HHHcCccEEEEecCcCcHHHHHHHHHHc
Q 020912 141 AEVAVQLIHRTGGLAVLAHPWALK-------------N----PAAIIRK---LKDVGLHGLEVYRSDGKLVAYTDLADTY 200 (320)
Q Consensus 141 ~~e~I~~I~~aGGiaVlAHP~~~~-------------~----~~~~i~~---l~~~GldGIEv~~~~~~~~~~~~lA~~~ 200 (320)
..+.|+.+.++ ||+|.+|.+... . .+.++++ +.++|.|+|.+-... ......++++.
T Consensus 119 ~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~--~~~~~~i~~~l 195 (264)
T PRK00311 119 VAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVP--AELAKEITEAL 195 (264)
T ss_pred HHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HHHHHHHHHhC
Confidence 44667777766 799999987321 0 1233433 557899998876553 25777888888
Q ss_pred CCcee---ecCCCCCCCCCCCccccCcc-CCHHHHHHHhcccccccchHHHHHHhhhcCCCC
Q 020912 201 GLLKL---GGSDYHGRGGHGESELGSVK-LPVLVLNDFLKVARPIWCGAIKEILESYADEPS 258 (320)
Q Consensus 201 ~L~~t---gGSD~Hg~~~~~~~~lG~~~-~p~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 258 (320)
..+.. +|.|+.|.----..-+|... .+...++.+.+. + ..+.+.++.|+++..
T Consensus 196 ~iP~igiGaG~~~dgqvlv~~D~lG~~~~~~pkf~k~~~~~----~-~~~~~a~~~y~~~V~ 252 (264)
T PRK00311 196 SIPTIGIGAGPDCDGQVLVWHDMLGLFSGFKPKFVKRYADL----A-GSIREAVKAYVAEVK 252 (264)
T ss_pred CCCEEEeccCCCCCceeeeHHhhcCCCCCCCCCchHhHhhh----H-HHHHHHHHHHHHHHh
Confidence 87765 57888773111112356532 121222222221 1 366777888887763
No 112
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=21.24 E-value=32 Score=26.01 Aligned_cols=13 Identities=38% Similarity=1.017 Sum_probs=8.8
Q ss_pred hhhhhhhhcccCh
Q 020912 285 GLVDECLSLWLTN 297 (320)
Q Consensus 285 ~~~~~~~~~~~~~ 297 (320)
++|.-|||-|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5788899999644
No 113
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=20.98 E-value=2.3e+02 Score=31.95 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHhhcCCeEeeeeEEEeEeccCCCCCCccEEEEEecc
Q 020912 1 MSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVHILAYYS 46 (320)
Q Consensus 1 ~~Gv~ea~~~a~~~GI~vIpGVEIS~~~~~~~~~~g~~vHILGY~~ 46 (320)
|-|+.++.++|++.||+-|-|+|+.... ...|++-|--
T Consensus 43 l~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~~~lvLLAk 80 (971)
T PRK05898 43 LYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TNATLVLYAK 80 (971)
T ss_pred cccHHHHHHHHHHcCCCEEEEEEEEEcC--------CCceEEEEeC
Confidence 4588999999999999999999998742 3468887754
No 114
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=20.97 E-value=5.8e+02 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=15.0
Q ss_pred CCccccCCCCCHHHHHHHHHHc
Q 020912 130 GPAYSTGSEPLAEVAVQLIHRT 151 (320)
Q Consensus 130 ~p~yv~~~~~~~~e~I~~I~~a 151 (320)
+|+|+|.+.-++.+.++..-.|
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~A 115 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKA 115 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHH
Confidence 4778887777777777655443
No 115
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.55 E-value=3.1e+02 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHcCCEEEecCCCCCCChHHHHHHHHHcCccEEEEecCc
Q 020912 140 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD 187 (320)
Q Consensus 140 ~~~e~I~~I~~aGGiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~~ 187 (320)
+-.++++.+...+=++|+-..... ....+.+.|.+.|+..||+-...
T Consensus 4 ~~~~~~~~l~~~~vi~Vvr~~~~~-~a~~~~~al~~gGi~~iEiT~~t 50 (222)
T PRK07114 4 DRIAVLTAMKATGMVPVFYHADVE-VAKKVIKACYDGGARVFEFTNRG 50 (222)
T ss_pred cHHHHHHHHHhCCEEEEEEcCCHH-HHHHHHHHHHHCCCCEEEEeCCC
Confidence 445778899999989998765321 12356777889999999998655
No 116
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.38 E-value=2.4e+02 Score=28.09 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=37.3
Q ss_pred cCCCCCHHHHHHHHHHcCCEEEecCCCCC-CChHHHHHHHHHcCccEEEEec
Q 020912 135 TGSEPLAEVAVQLIHRTGGLAVLAHPWAL-KNPAAIIRKLKDVGLHGLEVYR 185 (320)
Q Consensus 135 ~~~~~~~~e~I~~I~~aGGiaVlAHP~~~-~~~~~~i~~l~~~GldGIEv~~ 185 (320)
|..+|.+.+.|+..++.-|+.+.+--... .....++++|.++|+|=|-+.-
T Consensus 171 P~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv 222 (414)
T COG2100 171 PLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSV 222 (414)
T ss_pred CccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEeec
Confidence 34567888999999999888887632211 1235888999999999988863
No 117
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.28 E-value=2.6e+02 Score=18.95 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 020912 72 KDMILKLNKLKLPLKWEHV 90 (320)
Q Consensus 72 ~~ii~~L~~~G~~i~~eev 90 (320)
..++...++.||.++.+++
T Consensus 30 ~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 30 EEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHHHcCCCCCHHHh
Confidence 3445555567887776664
No 118
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=20.18 E-value=3.6e+02 Score=25.72 Aligned_cols=45 Identities=11% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHcC-CEEEecCCCCCCChHHHHHHHHHcCccEEEEecC
Q 020912 139 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRS 186 (320)
Q Consensus 139 ~~~~e~I~~I~~aG-GiaVlAHP~~~~~~~~~i~~l~~~GldGIEv~~~ 186 (320)
|...++++.|++.| |+.|+=|.+. ....++.+.+.|.+++-+-+.
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~ 260 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWR 260 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCC
Confidence 45678999999987 7777766652 236788899999999876554
No 119
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.15 E-value=4.9e+02 Score=24.40 Aligned_cols=38 Identities=11% Similarity=0.108 Sum_probs=25.3
Q ss_pred HHHHHHHHcCccEEEEecCcCc---HHHHHHHHHHcCCcee
Q 020912 168 AIIRKLKDVGLHGLEVYRSDGK---LVAYTDLADTYGLLKL 205 (320)
Q Consensus 168 ~~i~~l~~~GldGIEv~~~~~~---~~~~~~lA~~~~L~~t 205 (320)
..++...+.|++.|-++.+.++ .....++|+++|+.+.
T Consensus 95 ~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~ 135 (275)
T cd07937 95 LFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVE 135 (275)
T ss_pred HHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEE
Confidence 4556666778888888766543 3455677888886554
No 120
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.06 E-value=2.8e+02 Score=25.60 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=29.2
Q ss_pred hHHHHHHHHHcCccEEEEecCc------------CcHHHHHHHHHHcCCceee
Q 020912 166 PAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 206 (320)
Q Consensus 166 ~~~~i~~l~~~GldGIEv~~~~------------~~~~~~~~lA~~~~L~~tg 206 (320)
+.+.++.+.+.|++|||+.-+. .+...+.+..+++||-+++
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS 70 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee
Confidence 3577777888999999996322 1235677888999998753
Done!