Query 020913
Match_columns 320
No_of_seqs 258 out of 1354
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 10:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020913.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020913hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa2 d.219.1.1 (A:2-296) Pr 100.0 9.1E-48 6.6E-52 350.9 17.0 210 63-319 22-244 (295)
2 d1txoa_ d.219.1.1 (A:) putativ 100.0 1.3E-34 9.7E-39 254.7 10.9 187 63-318 4-191 (235)
3 d1a6qa2 d.219.1.1 (A:2-296) Pr 95.4 0.0011 8E-08 57.6 -0.3 154 2-220 1-162 (295)
4 d1b33n_ d.30.1.1 (N:) Allophyc 71.2 1.6 0.00012 27.2 3.0 17 239-255 37-53 (67)
5 d1prtb2 d.169.1.2 (B:4-89) Per 31.7 5.5 0.0004 25.5 0.3 12 89-100 47-58 (86)
6 d1b74a1 c.78.2.1 (A:1-105) Glu 28.6 13 0.00098 25.7 2.1 21 94-116 3-24 (105)
7 d1prtc2 d.169.1.2 (C:4-89) Per 24.3 5.5 0.0004 25.5 -0.7 12 89-100 47-58 (86)
8 d1nxua_ c.122.1.1 (A:) 2,3-dik 16.9 64 0.0047 26.8 4.5 30 92-121 74-103 (332)
9 d1hq0a_ d.194.1.1 (A:) Type 1 13.4 66 0.0048 26.2 3.4 22 188-210 143-164 (295)
10 d1rfma_ c.122.1.1 (A:) L-sulfo 12.8 59 0.0043 27.1 3.1 31 91-121 73-103 (344)
No 1
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=9.1e-48 Score=350.94 Aligned_cols=210 Identities=29% Similarity=0.319 Sum_probs=175.5
Q ss_pred eeeeeeccCCCCCCcceeeeeccCCC--CCceEEEEeeCCCcccHHHHHHHHHHhHHHHHHHHHhhhccCCCCCCccccC
Q 020913 63 TSCIFTQQGRKGINQDAMIVWEDFMS--EDVTFCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNG 140 (320)
Q Consensus 63 ~~~~~s~~G~r~~nED~~~v~~~~~~--~~~~~fgVfDGHG~~G~~~a~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~ 140 (320)
.+++.+.||+|.+|||++++..++.. +++.||||||||| |+.+|++++++|+..|.+.+........
T Consensus 22 ~~g~~s~~G~R~~~ED~~~~~~~~~~~~~~~~lf~V~DGhG--G~~~s~~~~~~l~~~l~~~~~~~~~~~~--------- 90 (295)
T d1a6qa2 22 RYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHA--GSQVAKYCCEHLLDHITNNQDFKGSAGA--------- 90 (295)
T ss_dssp EEEEEEEEETSSSCCEEEEEEEEETTTEEEEEEEEEEEEES--CSHHHHHHHHHHHHHHHTSHHHHCSSSS---------
T ss_pred EEEEEeCccCCCcccCeeEEEcccCCCCCceEEEEEEeCCC--ChHHHHHHHHHHHHHHHHhhhhcccccc---------
Confidence 46677888999999998887766543 5678999999999 9999999999999999876654422111
Q ss_pred CcccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCC--CCCCcCCCceEEEEEEeCCeEEEEEccCceEEEee
Q 020913 141 NTKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHP--NLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAVMGS 218 (320)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~~d~~l~~~~--~~~~~~~GtTav~~li~~~~l~vanvGDSRavl~~ 218 (320)
.....++++|.++|.++++++.... ......+||||+++++.+++||||||||||+||++
T Consensus 91 ------------------~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~ 152 (295)
T d1a6qa2 91 ------------------PSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCR 152 (295)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEE
T ss_pred ------------------chHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEee
Confidence 3345677788888888887765321 22334689999999999999999999999999999
Q ss_pred ecCCCceeeEecCcccCCCCHHHHHHHHHcCCeEEeccCCCCCCeEeccCCCCCceecccccCCcCCCccC--------e
Q 020913 219 KDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYG--------V 290 (320)
Q Consensus 219 ~~~~~~~~~~~LT~DH~p~~~~E~~RI~~~gg~v~~~~~~~~~~rv~~~~~~~g~lavsRalGd~~~k~~g--------v 290 (320)
++ .+++||.||+|.++.|++||+++||.|.. .|+ +|.|++||||||+.+|..+ |
T Consensus 153 ~~-----~~~~lT~dH~~~~~~E~~Ri~~~gg~v~~-------~r~------~g~l~~tRa~Gd~~~k~~~~~~~~~~~v 214 (295)
T d1a6qa2 153 NR-----KVHFFTQDHKPSNPLEKERIQNAGGSVMI-------QRV------NGSLAVSRALGDFDYKCVHGKGPTEQLV 214 (295)
T ss_dssp TT-----EEEEECCCCCTTSHHHHHHHHHTTCCEET-------TEE------TTTBSCSBCEECGGGSCCTTCCGGGSSS
T ss_pred cc-----cceeeccccCcccHHHHhhHhhcCCcccc-------ccc------CCceeeeeccCcHHhhhccccCcccccc
Confidence 87 99999999999999999999999999963 677 8999999999999998643 9
Q ss_pred eecceEEEEEeC-CCCeEEEEEcCCCCCCC
Q 020913 291 ISIPEFSHRLLT-DRDQFIVLASDGVSFSP 319 (320)
Q Consensus 291 ~~~Pdv~~~~l~-~~d~fliLaSDGlw~~~ 319 (320)
+++|||..+++. ++|+||||||||||++.
T Consensus 215 ~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l 244 (295)
T d1a6qa2 215 SPEPEVHDIERSEEDDQFIILACDGIWDVM 244 (295)
T ss_dssp BCCCEEEEEECCTTTEEEEEEECHHHHTTS
T ss_pred cccccceEEEeecccceeEeeecCcccccC
Confidence 999999999986 66789999999999963
No 2
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00 E-value=1.3e-34 Score=254.67 Aligned_cols=187 Identities=19% Similarity=0.159 Sum_probs=139.8
Q ss_pred eeeeeeccCC-CCCCcceeeeeccCCCCCceEEEEeeCCCcccHHHHHHHHHHhHHHHHHHHHhhhccCCCCCCccccCC
Q 020913 63 TSCIFTQQGR-KGINQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGN 141 (320)
Q Consensus 63 ~~~~~s~~G~-r~~nED~~~v~~~~~~~~~~~fgVfDGHG~~G~~~a~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 141 (320)
-++..|++|. |++|||++++. ..+|+|||||| |+.+++++++.++..+.+.+...
T Consensus 4 ~~~~~s~~G~~R~~nEDa~~~~-------~~l~~V~DG~G--G~~~g~~as~~~~~~l~~~~~~~--------------- 59 (235)
T d1txoa_ 4 RYAARSDRGLVRANNEDSVYAG-------ARLLALADGMG--GHAAGEVASQLVIAALAHLDDDE--------------- 59 (235)
T ss_dssp EEEEEEECCSSCSSCCEEEEEC-------SSEEEEEEEEC--TTTHHHHHHHHHHHHHGGGGSSC---------------
T ss_pred EEEEECCCCCCCCCCCCccccC-------CCEEEEEeCCC--CcHHHHHHHHHHHHHHHHHhhcc---------------
Confidence 3678899995 89999999883 35999999999 99999999998887775432211
Q ss_pred cccccCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCceEEEEEEeCCeEEEEEccCceEEEeeecC
Q 020913 142 TKKLEAGDSEKDGPAEDKSNSLWREAYLKAYKSMDKELKSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDS 221 (320)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~~d~~l~~~~~~~~~~~GtTav~~li~~~~l~vanvGDSRavl~~~~~ 221 (320)
...+....+++++.+++..+.+........ ..+|||++++++.++++|++||||||+|+++++
T Consensus 60 --------------~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~--~~~gtt~~~~~~~~~~l~~anvGDSr~~l~r~g- 122 (235)
T d1txoa_ 60 --------------PGGDLLAKLDAAVRAGNSAIAAQVEMEPDL--EGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDG- 122 (235)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHHHHHHHHCGGG--TTCEECEEEEEEETTEEEEEEESSCEEEEEETT-
T ss_pred --------------CcccHHHHHHHHHHHHHHHHHHHhhccccc--ccceeeeeeeeeccceeEEEecCCccEEEecCC-
Confidence 012455667777777777776665544332 347999999999999999999999999999988
Q ss_pred CCceeeEecCcccCCCCHHHHHHHHHcCCeEEeccCCCCCCeEeccCCCCCceecccccCCcCCCccCeeecceEEEEEe
Q 020913 222 NDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLL 301 (320)
Q Consensus 222 ~~~~~~~~LT~DH~p~~~~E~~RI~~~gg~v~~~~~~~~~~rv~~~~~~~g~lavsRalGd~~~k~~gv~~~Pdv~~~~l 301 (320)
.+++||.||++. .++...|... . +..........++|++|+. ..+|++..+++
T Consensus 123 ----~~~~lt~dH~~~-----~~~~~~g~~~-~----------~~~~~~~~~~~lt~~~g~~-------~~~pdi~~~~l 175 (235)
T d1txoa_ 123 ----ELTQITKDDTFV-----QTLVDEGRIT-P----------EEAHSHPQRSLIMRALTGH-------EVEPTLTMREA 175 (235)
T ss_dssp ----EEEECSCCCBHH-----HHHHHTTSSC-T----------TGGGGCTTTTCBCCCBSSS-------CCCCEEEEEEC
T ss_pred ----EEEEecCCCcHH-----HHhhhhcccc-h----------hhhhhccccchhhcccccc-------cccceEEEEec
Confidence 999999999764 3334443211 0 1111113456799999964 45799999999
Q ss_pred CCCCeEEEEEcCCCCCC
Q 020913 302 TDRDQFIVLASDGVSFS 318 (320)
Q Consensus 302 ~~~d~fliLaSDGlw~~ 318 (320)
.++| +|||||||||++
T Consensus 176 ~~~D-~llL~SDGl~d~ 191 (235)
T d1txoa_ 176 RAGD-RYLLCSDGLSDP 191 (235)
T ss_dssp CTTC-EEEEECHHHHTT
T ss_pred CCCC-EEEEcCcchhcC
Confidence 9988 677999999986
No 3
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.42 E-value=0.0011 Score=57.58 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=92.8
Q ss_pred CCcccCCCCccccCCCCCCCcCCCccccccccccccccccccccCCCCCCCceeeeCCceeeeeeeeccCCCCCCcceee
Q 020913 2 GGCVSTSSRSTCSSRSNGETVSPIYGCCGQKRTKRTFSDHVITMHNLPSVPHRIFMNGKSRTSCIFTQQGRKGINQDAMI 81 (320)
Q Consensus 2 ~~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~r~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~s~~G~r~~nED~~~ 81 (320)
|.-||+|.+++.++ .++.....||++.++|+|++|||++....++...... ..+++
T Consensus 1 ~~~l~~p~~~k~~~--~~~~~~~~~g~~s~~G~R~~~ED~~~~~~~~~~~~~~------~~lf~---------------- 56 (295)
T d1a6qa2 1 GAFLDKPKMEKHNA--QGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLES------WSFFA---------------- 56 (295)
T ss_dssp CCCCSSCEEEEEEE--EEEETTEEEEEEEEEETSSSCCEEEEEEEEETTTEEE------EEEEE----------------
T ss_pred CCCCCCCCcccCcc--cccCCceEEEEEeCccCCCcccCeeEEEcccCCCCCc------eEEEE----------------
Confidence 67899999999775 4455667899999999999999998776544221110 01122
Q ss_pred eeccCCCCCceEEEEeeCCCcccHHHHHHHHHHhHHHHHHHHHhhhccCCCCCCccccCCcccccCCCCCCCCCCchhhH
Q 020913 82 VWEDFMSEDVTFCGVFDGHGPHGHLVARRVRDALPIKLLSFLLASQSRQNGPGKTCFNGNTKKLEAGDSEKDGPAEDKSN 161 (320)
Q Consensus 82 v~~~~~~~~~~~fgVfDGHG~~G~~~a~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.+ |. -||.- +..+++.+.+.|...+............ .+.
T Consensus 57 V~D----------Gh-GG~~~-s~~~~~~l~~~l~~~~~~~~~~~~~~~~---------------------------~~~ 97 (295)
T d1a6qa2 57 VYD----------GH-AGSQV-AKYCCEHLLDHITNNQDFKGSAGAPSVE---------------------------NVK 97 (295)
T ss_dssp EEE----------EE-SCSHH-HHHHHHHHHHHHHTSHHHHCSSSSCCHH---------------------------HHH
T ss_pred EEe----------CC-CChHH-HHHHHHHHHHHHHHhhhhccccccchHH---------------------------HHH
Confidence 211 11 15541 7788999988887766554332222221 456
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCCCCCC-------cCCCceEEEEEEeCCeEEEEEccCceEEEeeec
Q 020913 162 SLWREAYLKAYKSMDKEL-KSHPNLDC-------FCSGSTAVTIVKQGSNLFMGYIGDSRAVMGSKD 220 (320)
Q Consensus 162 ~~l~~a~~~a~~~~d~~l-~~~~~~~~-------~~~GtTav~~li~~~~l~vanvGDSRavl~~~~ 220 (320)
+.++++|.++.+.+.... ........ ...+..+.++-+-+.++|+.. +..++..+.+
T Consensus 98 ~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~--~~~~~~lT~d 162 (295)
T d1a6qa2 98 NGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCR--NRKVHFFTQD 162 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEE--TTEEEEECCC
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEee--cccceeeccc
Confidence 778888888877664322 12211111 123555666667777888776 4455555443
No 4
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=71.20 E-value=1.6 Score=27.19 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCeEEec
Q 020913 239 PREAERIKRCKGRVFAL 255 (320)
Q Consensus 239 ~~E~~RI~~~gg~v~~~ 255 (320)
-.|.+||.++||+|..+
T Consensus 37 f~EQQrI~K~GGkI~KV 53 (67)
T d1b33n_ 37 FREQQRIQKMGGKIVKV 53 (67)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 48999999999999875
No 5
>d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=31.69 E-value=5.5 Score=25.54 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=10.6
Q ss_pred CCceEEEEeeCC
Q 020913 89 EDVTFCGVFDGH 100 (320)
Q Consensus 89 ~~~~~fgVfDGH 100 (320)
+.|++|++|||-
T Consensus 47 ~gwsi~~lydgt 58 (86)
T d1prtb2 47 RGWSIFALYDGT 58 (86)
T ss_dssp CSSCEEECSSEE
T ss_pred CCceEEEEeccc
Confidence 679999999984
No 6
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=28.65 E-value=13 Score=25.75 Aligned_cols=21 Identities=38% Similarity=0.757 Sum_probs=17.6
Q ss_pred EEEee-CCCcccHHHHHHHHHHhH
Q 020913 94 CGVFD-GHGPHGHLVARRVRDALP 116 (320)
Q Consensus 94 fgVfD-GHG~~G~~~a~~~~~~l~ 116 (320)
-|||| |.| |-.+.+.+++.++
T Consensus 3 IgifDSGiG--GLtVl~~l~~~lP 24 (105)
T d1b74a1 3 IGIFDSGVG--GLTVLKAIRNRYR 24 (105)
T ss_dssp EEEEESSST--HHHHHHHHHHHSS
T ss_pred EEEEeCCCC--HHHHHHHHHHHCC
Confidence 58999 899 9888888887765
No 7
>d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]}
Probab=24.31 E-value=5.5 Score=25.54 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=10.6
Q ss_pred CCceEEEEeeCC
Q 020913 89 EDVTFCGVFDGH 100 (320)
Q Consensus 89 ~~~~~fgVfDGH 100 (320)
+.|++|++|||-
T Consensus 47 ~gwsi~~lydgt 58 (86)
T d1prtc2 47 PGWSIYGLYDGT 58 (86)
T ss_dssp CTTCEEECSSSE
T ss_pred CCceEEEEeccc
Confidence 679999999994
No 8
>d1nxua_ c.122.1.1 (A:) 2,3-diketogulonate oxidoreductase (YiaK) {Escherichia coli [TaxId: 562]}
Probab=16.91 E-value=64 Score=26.78 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred eEEEEeeCCCcccHHHHHHHHHHhHHHHHH
Q 020913 92 TFCGVFDGHGPHGHLVARRVRDALPIKLLS 121 (320)
Q Consensus 92 ~~fgVfDGHG~~G~~~a~~~~~~l~~~l~~ 121 (320)
.-+++.||++++|+-++.++.+.+.+.-.+
T Consensus 74 ~~~~~vDg~~g~G~~~~~~a~~~ai~kA~~ 103 (332)
T d1nxua_ 74 GAIEQWDAQRSIGNLTAKKMMDRAIELAAD 103 (332)
T ss_dssp TTEEEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEcccccccHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999988776655
No 9
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=13.43 E-value=66 Score=26.19 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=18.4
Q ss_pred cCCCceEEEEEEeCCeEEEEEcc
Q 020913 188 FCSGSTAVTIVKQGSNLFMGYIG 210 (320)
Q Consensus 188 ~~~GtTav~~li~~~~l~vanvG 210 (320)
..+|||.+++. .++.+|+.|+|
T Consensus 143 ~LSGCT~v~A~-K~~~ly~~HtG 164 (295)
T d1hq0a_ 143 NLSGCTTIVAR-KEGYIYKVHTG 164 (295)
T ss_dssp CBSSCEEEEEE-ETTEEEEEEEE
T ss_pred cccCcEEEEEE-cCCeEEEEEcc
Confidence 56899998885 55689999999
No 10
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.77 E-value=59 Score=27.13 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.9
Q ss_pred ceEEEEeeCCCcccHHHHHHHHHHhHHHHHH
Q 020913 91 VTFCGVFDGHGPHGHLVARRVRDALPIKLLS 121 (320)
Q Consensus 91 ~~~fgVfDGHG~~G~~~a~~~~~~l~~~l~~ 121 (320)
.--++++||+++.|+-++.++.+...+.-.+
T Consensus 73 ~~a~~~vDg~~g~G~~a~~~a~~~aie~A~~ 103 (344)
T d1rfma_ 73 SPATAVIDGDLGLGQVVGKKAMELAIKKAKN 103 (344)
T ss_dssp CSSEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcccCCccHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999988776554
Done!