BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020914
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%)
Query: 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70
K+KGNE+FK G+Y A Y +A+K+DP N L+SNRAA L++ +AL D +T I L
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116
+ ++ KGY RK L AM ++ A A++ ALQ +P + E ++
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%)
Query: 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
+ +K+KGNE F+ G+Y +A YT+AIK++P + L+SNRAA + L++ AL D E
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
I L P + KGY RK LEAM+ Y A+ +Q AL + E + +R
Sbjct: 77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRC 127
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 4/171 (2%)
Query: 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
AEE LK + N++FKA +Y A Y+QAI+ +PSN + NR+ A+L AL DA
Sbjct: 6 AEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
I L+ ++ KGY+R+ A+ ++ AL ++T ++ P + K + +++ K
Sbjct: 64 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123
Query: 125 KKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--ECWKHVFSFVVETME 173
K + + +V LD + ++Y E K SF+ E M+
Sbjct: 124 KAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQ 174
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
LK+KGN+ GN A Y++AIK DP N L+SNR+AA+ KA D T+
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66
Query: 70 LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---NPQSAE 110
L P W KGY RK LE + ++++A ++ L++ NPQ E
Sbjct: 67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
AEE LK + N++FKA +Y A Y+QAI+ +PSN + NR+ A+L AL DA
Sbjct: 13 AEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
I L+ ++ KGY+R+ A+ ++ AL ++T ++ P + K + +++ K
Sbjct: 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130
Query: 125 KKRAQEV---ENIRSNVD 139
K + + E+ RS VD
Sbjct: 131 KAFERAIAGDEHKRSVVD 148
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
AEE LK + N++FKA +Y A Y+QAI+ +PSN + NR+ A+L AL DA
Sbjct: 21 AEE--LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDA 78
Query: 65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
I L+ ++ KGY+R+ A+ ++ AL ++T ++ P + K + +++ K
Sbjct: 79 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 138
Query: 125 K 125
K
Sbjct: 139 K 139
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
AE LK +GNE K N+ A Y +AI+ +P+N F NRAAA+ L A+ D
Sbjct: 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDC 69
Query: 65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
E I ++P + K Y R G L ++ ++ +A++ ++ AL+ +P +
Sbjct: 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
LK++GN F Y +AAA Y +AI ++P ++NRA +L + + +ALAD +
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66
Query: 70 LNPQWEKGYFRKG-CILEAMEQYDDALSAFQTA 101
L+ Q K +F G C LE ME YD+A++ Q A
Sbjct: 67 LDGQSVKAHFFLGQCQLE-MESYDEAIANLQRA 98
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
LK++GN F Y +AAA Y +AI ++P ++NRA +L + + +ALAD +
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71
Query: 70 LNPQWEKGYFRKG-CILEAMEQYDDALSAFQTA 101
L+ Q K +F G C LE ME YD+A++ Q A
Sbjct: 72 LDGQSVKAHFFLGQCQLE-MESYDEAIANLQRA 103
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 51/103 (49%)
Query: 1 MAAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKA 60
MA E LK +GN Y KA LYTQA+ P+NP SNRAAA+ + KA
Sbjct: 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64
Query: 61 LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103
DAE ++P++ K + R G M Y A A++ ++
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
+ K+ GN ++K G+Y KA Y +A++ DP+N + + N A+ KA+ + +
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
L+P K ++R+G Y A+ +Q AL+ +P +A+ + + Q
Sbjct: 71 ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQ 122
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
AEE L+ G E+F ++ A YT+ IK+ P + +SNRAAA L+ +A+AD
Sbjct: 4 AEEARLE--GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101
I +P + + Y RK A+++Y AL A
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64
AEE L+ G E+F ++ A YT+ IK+ P + +SNRAAA L+ +A+AD
Sbjct: 139 AEEARLE--GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196
Query: 65 ETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101
I +P + + Y RK A+++Y AL A
Sbjct: 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
+A + LK++GN FF A N+ +A Y AI+ DP+ P +SN +A ++ L K +
Sbjct: 18 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 77
Query: 64 AETTISLNPQWEKGYFRKGCILEAMEQYDDA---LSAFQTALQYNPQSAE--VSRKIKRV 118
+ + P K R+ E++ + DA LS ++ S E + R + +
Sbjct: 78 TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 137
Query: 119 S------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151
+ L+KD+ R +V + SN + F S +
Sbjct: 138 AMKVLNENLSKDEGRGSQV--LPSNTSLASFFGIFDSHL 174
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT---------- 67
F N L A L ++I P+ P + FL L LAD E +
Sbjct: 250 FLKNNLLDAQVLLQESINLHPT-PNSY-----IFLALT-----LADKENSQEFFKFFQKA 298
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
+ LNP++ Y+ +G + ++ Y +A FQ A NP++
Sbjct: 299 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 8 MSLKDKGN--EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
++L DK N EFFK + +A+ +P P + +R + L A D +
Sbjct: 280 LTLADKENSQEFFK---------FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 330
Query: 66 TTISLNPQWEKGYFRKGCIL 85
SLNP+ Y + C+L
Sbjct: 331 KAQSLNPENVYPYIQLACLL 350
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALAD 63
+A + LK++GN FF A N+ +A Y AI+ DP+ P +SN +A ++ L K +
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF 81
Query: 64 AETTISLNPQWEKGYFRKGCILEAMEQYDDA---LSAFQTALQYNPQSAE--VSRKIKRV 118
+ + P K R+ E++ + DA LS ++ S E + R + +
Sbjct: 82 TTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141
Query: 119 S------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151
+ L+KD+ R +V + SN + F S +
Sbjct: 142 AMKVLNENLSKDEGRGSQV--LPSNTSLASFFGIFDSHL 178
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 21/101 (20%)
Query: 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT---------- 67
F N L A L ++I P+ P + FL L LAD E +
Sbjct: 254 FLKNNLLDAQVLLQESINLHPT-PNSY-----IFLALT-----LADKENSQEFFKFFQKA 302
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
+ LNP++ Y+ +G + ++ Y +A FQ A NP++
Sbjct: 303 VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 8 MSLKDKGN--EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65
++L DK N EFFK + +A+ +P P + +R + L A D +
Sbjct: 284 LTLADKENSQEFFK---------FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 66 TTISLNPQWEKGYFRKGCIL 85
SLNP+ Y + C+L
Sbjct: 335 KAQSLNPENVYPYIQLACLL 354
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAET 66
L+ +GNE FK G+Y A A YTQA+ D + L NRAA L L +KA +A
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119
I + K +R+ LE + + D A+ Q + P++ ++ +S
Sbjct: 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 54/107 (50%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN ++K G+Y +A Y +A++ DP+N + N A+ ++A+ + + L+P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
+ ++ G YD+A+ +Q AL+ +P +AE + + Q
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN ++K G+Y +A Y +A++ DP + + N A+ ++A+ + + L+P+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
+ ++ G YD+A+ +Q AL+ +P+SAE
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 50/95 (52%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN ++K G+Y +A Y +A++ DP + + N A+ ++A+ + + L+P+
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108
+ ++ G YD+A+ +Q AL+ +P+S
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAI-----------KQDPSNPTL----FSNRAAAFLHL 54
+K+KG +FK G Y++A Y + + K+ ++ + F N A +L L
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
+ KA+ + + L+ EKG +R+G M +++ A F+ L+ NPQ+ +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 115 IKRVSQLAKD 124
I + AK+
Sbjct: 391 ISMCQKKAKE 400
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAI-----------KQDPSNPTL----FSNRAAAFLHL 54
+K+KG +FK G Y++A Y + + K+ ++ + F N A +L L
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114
+ KA+ + + L+ EKG +R+G M +++ A F+ L+ NPQ+ +
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 115 IKRVSQLAKD 124
I + AK+
Sbjct: 391 IFMCQKKAKE 400
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
++LKDKGN+FF+ Y A Y A++ +P +SN +A ++ + L K + +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDAL 95
+ L P + K R+ E + ++ DA+
Sbjct: 66 LELKPDYSKVLLRRASANEGLGKFADAM 93
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 30 YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89
+ +A+K D +N +++ +R L ++A D + L+P+ Y + C+
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352
Query: 90 QYDDALSAFQTALQYNPQSAEV 111
++DD + F A + P++ EV
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEV 374
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 21/163 (12%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + AG A + + A+ DP N + RA FL K AL D I+L
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXD 69
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133
+ ++G +L + D+A F+ L+ NP E + + SQL K A E +
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE---EKEAESQLVK----ADEXQR 122
Query: 134 IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAV 176
+RS Q LD F GA+ + +F+ + +E V
Sbjct: 123 LRS-----QALDAFD-------GAD--YTAAITFLDKILEVCV 151
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN ++K G+Y +A Y +A++ P+N + N A+ ++A+ + + L P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
+ ++ G YD+A+ +Q AL+ P +AE + + Q
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQ 122
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + AG A + + A+ DP N + RA FL + K AL D I L
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
+ ++G +L + D+A F+ L+ NP E
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL 61
K++GN FK G Y +A Y Q I P NP +SN+A A + L + +A+
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAI 58
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%)
Query: 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68
SL + N + GN +A LY +A++ P SN A+ KL +AL + I
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
++P + Y G L+ M+ AL + A+Q NP A+ + +
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 42/104 (40%)
Query: 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80
G +A Y +AI+ P+ +SN + + AL I +NP + +
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124
I + +A+++++TAL+ P + + Q+ D
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + AG A + + A+ DP N + RA FL K AL D I L
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXD 92
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
+ ++G +L + D+A F+ L+ NP E
Sbjct: 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE 129
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71
D GN G +A A Y +AI+ P+ +SN F ++ A+ E ++L+
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118
P + Y G +L+ +D A++A+ AL +P A V + V
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84
++A T AIKQ+P +SN + +L +A+ + L P + GY
Sbjct: 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Query: 85 LEAMEQYDDALSAFQTALQYNP 106
L A + A+ A+ +ALQYNP
Sbjct: 111 LVAAGDMEGAVQAYVSALQYNP 132
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN +A + +A A Y +A+ P++ + N A + ++ A+ I L P
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 74 WEKGYFR-------KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126
+ Y KG + EA + Y+ AL T A + R+ + + + +
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 127 RAQEV 131
+A EV
Sbjct: 330 KALEV 334
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67
++ KD GN +K ++ KA Y +AI+ DPSN T ++N+AA + K + + E
Sbjct: 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99
+ + + Y I +AM + A +AFQ
Sbjct: 69 VEVGRETRADY---KLIAKAMSR---AGNAFQ 94
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 9 SLKDK--GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
+LK+K GN+ +K ++ A Y +A + DP+N T +N+AA + NK E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 67 TISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119
I + Q K Y R G E+Y DA+ + +L ++ +V +K ++
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHRTPDVLKKCQQAE 122
Query: 120 QLAKDKKR 127
++ K+++R
Sbjct: 123 KILKEQER 130
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIK-------------QDPSNPTLFS--NRAAAFLHL 54
+K++G +FK G Y +A Y + + Q L S N A L L
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP-------Q 107
+ A+ + L+ EKG FR+G A+ ++ A + FQ LQ P Q
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 108 SAEVSRKIKRVSQLAKDKK 126
A ++I+R QLA++KK
Sbjct: 270 LAVCQQRIRR--QLAREKK 286
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + + G Y A L+ +A+K++P +P A L L +N AL + +T ++ P+
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 74 WEKGY----------FRKGCILEAMEQY-DDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122
+ GY +R+ E + Y + ALS + A + NP+ A + + V L
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL 131
Query: 123 KDKKRAQ 129
++ +A+
Sbjct: 132 GERDKAE 138
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
E+ R G L A+ +YD AL+ F+ AL+ NPQ E
Sbjct: 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE 40
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + K G + L ++I P N + + ++ + K + A+ NP
Sbjct: 49 GIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPV 108
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
FR G L+ + ++D+A+ +F+ AL P +V R I
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72
+G+EF G+Y KAA +T+AI+++ + + N A + +L +ALA + + L+
Sbjct: 32 RGSEF---GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
Y+ G + E Y +A F+ AL+ ++ ++
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAI----------------KQDPSNPTLFSNRAAAFLH 53
LK+ GN FFK+ N+ A YT+ + K P + N A L
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 54 LVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113
+ A+ + ++P K +R+ + +++YD AL+ + A + P+ +
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 114 KIKRVSQ---LAKDKKRA 128
++ +V Q KDK++A
Sbjct: 346 ELLKVKQKIKAQKDKEKA 363
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 9 SLKDK--GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
+LK+K GN+ +K ++ A Y +A + DP+N T +N+AA + NK E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 67 TISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119
I + Q K Y R G E+Y DA+ + +L ++ +V +K ++
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHRTPDVLKKCQQAE 122
Query: 120 QLAKDK 125
++ K++
Sbjct: 123 KILKEQ 128
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + K G + L +++ P N + + ++ + K + A+ NP
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
FR G L+ + ++D+A+ +F+ AL P +V R I
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 9 SLKDKGNEFFKAGNYLKAAALYTQAI--------KQDPSNPT----------LFSNRAAA 50
+L+ KGNE F +Y +A Y A+ ++ P P L++N +
Sbjct: 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQC 72
Query: 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110
+L++ L++A + + EK FR+ A + D+A + L+ +P +A
Sbjct: 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132
Query: 111 -VSRKIKRVSQLAKDKK 126
V+R++K V++ +KK
Sbjct: 133 VVAREMKIVTERRAEKK 149
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + K G + L +++ P N + + ++ + K + A+ NP
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
FR G L+ + ++D+A+ +F+ AL P +V R I
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
G + K G + L +++ P N + + ++ + K + A+ NP
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115
FR G L+ + ++D+A+ +F+ AL P +V R I
Sbjct: 109 NFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.8 bits (81), Expect = 0.034, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 34/107 (31%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN ++K G+Y +A Y +A++ DP+N + N A
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA----------------------- 52
Query: 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120
Y+++G YD+A+ +Q AL+ +P +AE + + Q
Sbjct: 53 ----YYKQG-------DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 24/139 (17%)
Query: 10 LKDKGNEFFKAGNYLKAAALYTQAIK-------------QDPSNPTLFS--NRAAAFLHL 54
+K++G +FK G Y +A Y + + Q L S N A L L
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP-------Q 107
+ A+ + L+ EKG R+G A+ ++ A + FQ LQ P Q
Sbjct: 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ 269
Query: 108 SAEVSRKIKRVSQLAKDKK 126
A ++I+R QLA++KK
Sbjct: 270 LAVCQQRIRR--QLAREKK 286
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99
NP N AA + L + ++A+ ++ + K FR+G + Q D A F+
Sbjct: 230 NPCHL-NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFR 288
Query: 100 TALQYNPQSAEVSRKIKRVSQLAK 123
A +Y P + R+++ +++ K
Sbjct: 289 KAQKYAPDDKAIRRELRALAEQEK 312
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 9 SLKDK--GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET 66
+LK+K GN+ +K ++ A Y +A + DP+N T N+AA + NK E
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEK 63
Query: 67 TISLNPQWEK-------GYFRKGCILEAMEQYDDALSAFQTAL 102
I + + + Y R G E+Y DA+ + +L
Sbjct: 64 AIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSL 106
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 36 QDPSNPTLFSNRAAAFLHLVKLN--KALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93
+DP +P F+ A A HL N +ALA E + +P + Y+ G + E +++ DD
Sbjct: 2 EDPEDP--FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDD 59
Query: 94 ALSAFQTALQYNPQSAEVSRK---IKRVSQLAKDKKRAQEVE 132
A+ + Q EV+R+ K +S+L K +A+ +E
Sbjct: 60 AIDTY-------AQGIEVAREEGTQKDLSELQDAKLKAEGLE 94
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 32.7 bits (73), Expect = 0.26, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 36 QDPSNPTLFSNRAAAFLHLVKLN--KALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93
+DP +P F+ A A HL N +ALA E + +P + Y+ G + E +++ DD
Sbjct: 1 EDPEDP--FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDD 58
Query: 94 ALSAFQTALQYNPQSAEVSRK---IKRVSQLAKDKKRAQEVE 132
A+ + Q EV+R+ K +S+L K +A+ +E
Sbjct: 59 AIDTY-------AQGIEVAREEGTQKDLSELQDAKLKAEGLE 93
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106
I+LN + Y++ G + ++M ++D A+ A++ + P
Sbjct: 100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73
GN ++K G+Y +A Y +A++ DP + + N A+ ++A+ + + L+P+
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 69
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69
FK NY +A ++ + + ++P +++ RA + L K + A D ET S
Sbjct: 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 17 FFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
FF A N Y + L A++ +P++ L ++ + + A A+ + L P
Sbjct: 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
+ + + G L + +AL A+ AL NP V
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 17 FFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75
FF A N Y + L A++ +P++ L ++ + + A A+ + L P
Sbjct: 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA 206
Query: 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111
+ + + G L + +AL A+ AL NP V
Sbjct: 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,158,858
Number of Sequences: 62578
Number of extensions: 354347
Number of successful extensions: 980
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 111
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)