Query 020914
Match_columns 320
No_of_seqs 344 out of 2678
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 9.9E-34 2.1E-38 245.8 10.3 280 2-292 213-498 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.1E-31 4.6E-36 231.4 8.2 280 4-292 147-464 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 3E-25 6.4E-30 208.0 18.9 264 6-278 126-495 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 8.3E-25 1.8E-29 205.0 21.9 231 4-240 328-571 (615)
5 PRK15174 Vi polysaccharide exp 99.9 2.9E-23 6.3E-28 194.6 17.7 263 2-275 71-343 (656)
6 KOG0547 Translocase of outer m 99.9 1.1E-22 2.5E-27 172.9 17.5 230 7-242 326-568 (606)
7 KOG0547 Translocase of outer m 99.9 2.3E-22 4.9E-27 171.1 18.5 261 5-276 113-563 (606)
8 KOG1126 DNA-binding cell divis 99.9 1.7E-23 3.7E-28 184.1 11.1 207 2-245 416-625 (638)
9 PRK15174 Vi polysaccharide exp 99.9 4.7E-22 1E-26 186.5 17.4 264 3-278 106-380 (656)
10 KOG1126 DNA-binding cell divis 99.9 2.9E-22 6.3E-27 176.4 12.0 216 7-274 353-615 (638)
11 PRK11447 cellulose synthase su 99.9 4.2E-21 9.1E-26 191.1 21.9 53 219-276 609-663 (1157)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 8E-21 1.7E-25 185.6 21.5 271 3-278 563-865 (899)
13 TIGR02917 PEP_TPR_lipo putativ 99.9 5.4E-21 1.2E-25 186.8 19.3 265 3-275 529-828 (899)
14 PRK11447 cellulose synthase su 99.9 1.4E-20 2.9E-25 187.5 22.2 89 189-277 646-738 (1157)
15 PRK11189 lipoprotein NlpI; Pro 99.9 1.7E-20 3.6E-25 159.9 18.8 128 4-132 61-188 (296)
16 PRK11788 tetratricopeptide rep 99.8 1.1E-19 2.3E-24 161.8 19.2 262 7-276 35-308 (389)
17 PRK11788 tetratricopeptide rep 99.8 3.7E-19 8E-24 158.4 19.9 262 3-275 65-343 (389)
18 KOG0624 dsRNA-activated protei 99.8 3.6E-19 7.9E-24 145.8 17.2 107 2-108 33-139 (504)
19 KOG0553 TPR repeat-containing 99.8 1.6E-19 3.5E-24 145.9 13.3 122 5-126 79-200 (304)
20 KOG0495 HAT repeat protein [RN 99.8 2E-19 4.4E-24 158.1 14.1 286 3-304 614-909 (913)
21 PRK10049 pgaA outer membrane p 99.8 2.4E-18 5.1E-23 164.7 22.8 271 3-275 45-335 (765)
22 KOG0548 Molecular co-chaperone 99.8 1.1E-18 2.5E-23 150.5 18.2 266 8-278 3-454 (539)
23 KOG2076 RNA polymerase III tra 99.8 1.2E-17 2.6E-22 151.9 25.2 264 5-275 137-508 (895)
24 PRK15359 type III secretion sy 99.8 1.5E-18 3.1E-23 131.7 16.4 115 8-122 25-139 (144)
25 PRK09782 bacteriophage N4 rece 99.8 3.1E-18 6.7E-23 164.9 22.8 219 14-240 516-740 (987)
26 KOG1125 TPR repeat-containing 99.8 1.8E-19 4E-24 156.6 12.6 226 10-275 288-523 (579)
27 KOG1155 Anaphase-promoting com 99.8 2.2E-18 4.7E-23 146.2 18.2 194 11-210 334-537 (559)
28 PRK11189 lipoprotein NlpI; Pro 99.8 5.4E-19 1.2E-23 150.6 14.8 214 20-240 39-265 (296)
29 PRK12370 invasion protein regu 99.8 1.3E-18 2.7E-23 160.8 18.1 126 7-132 258-395 (553)
30 PRK09782 bacteriophage N4 rece 99.8 9.8E-19 2.1E-23 168.4 17.1 255 4-273 472-734 (987)
31 KOG1173 Anaphase-promoting com 99.8 4.1E-18 8.9E-23 147.8 15.6 130 3-132 308-437 (611)
32 TIGR02521 type_IV_pilW type IV 99.8 2.4E-17 5.3E-22 135.5 19.3 128 5-132 29-158 (234)
33 KOG2002 TPR-containing nuclear 99.8 1.1E-17 2.4E-22 153.1 18.6 221 2-226 159-389 (1018)
34 PRK12370 invasion protein regu 99.8 2.2E-17 4.8E-22 152.6 20.3 130 3-132 291-429 (553)
35 PF13429 TPR_15: Tetratricopep 99.8 7.7E-19 1.7E-23 149.1 6.1 249 11-270 12-268 (280)
36 KOG2002 TPR-containing nuclear 99.7 7.7E-17 1.7E-21 147.7 17.8 253 5-266 305-580 (1018)
37 KOG1155 Anaphase-promoting com 99.7 3.4E-16 7.4E-21 133.1 19.9 253 5-275 162-457 (559)
38 COG3063 PilF Tfp pilus assembl 99.7 2.7E-16 5.9E-21 122.5 17.5 127 6-132 34-162 (250)
39 KOG1173 Anaphase-promoting com 99.7 9.4E-17 2E-21 139.5 15.6 262 5-277 242-516 (611)
40 PRK15363 pathogenicity island 99.7 2.9E-16 6.4E-21 117.0 15.3 103 4-106 32-134 (157)
41 TIGR03302 OM_YfiO outer membra 99.7 8E-16 1.7E-20 127.3 19.6 113 4-116 30-156 (235)
42 PLN02789 farnesyltranstransfer 99.7 7.7E-16 1.7E-20 131.3 18.6 223 4-261 34-266 (320)
43 TIGR00540 hemY_coli hemY prote 99.7 2.6E-15 5.7E-20 134.0 22.4 263 6-274 83-394 (409)
44 PRK10049 pgaA outer membrane p 99.7 1E-15 2.2E-20 146.6 20.4 260 4-275 12-297 (765)
45 KOG1125 TPR repeat-containing 99.7 1E-15 2.2E-20 133.6 17.0 222 2-270 314-562 (579)
46 TIGR02552 LcrH_SycD type III s 99.7 1.4E-15 3E-20 114.6 15.8 114 2-115 12-125 (135)
47 PLN03088 SGT1, suppressor of 99.7 1.3E-15 2.9E-20 132.7 16.8 114 9-122 4-117 (356)
48 PRK10370 formate-dependent nit 99.7 1.1E-15 2.4E-20 122.0 15.0 113 20-132 52-167 (198)
49 TIGR02521 type_IV_pilW type IV 99.7 3.7E-15 8E-20 122.4 18.5 130 3-132 61-192 (234)
50 KOG0550 Molecular chaperone (D 99.7 6E-17 1.3E-21 135.8 6.6 252 5-274 47-345 (486)
51 KOG1174 Anaphase-promoting com 99.7 6.9E-15 1.5E-19 123.6 18.4 236 4-256 229-511 (564)
52 PRK15359 type III secretion sy 99.7 1.5E-15 3.2E-20 115.2 12.0 104 26-132 12-115 (144)
53 COG3063 PilF Tfp pilus assembl 99.7 9.2E-15 2E-19 114.1 16.1 131 3-133 65-197 (250)
54 PRK10747 putative protoheme IX 99.7 2.3E-14 4.9E-19 127.4 20.9 258 6-275 83-386 (398)
55 KOG1840 Kinesin light chain [C 99.7 1.3E-14 2.9E-19 129.2 18.9 177 3-181 195-399 (508)
56 KOG0548 Molecular co-chaperone 99.6 5.3E-15 1.1E-19 128.1 14.5 121 2-122 353-473 (539)
57 KOG1129 TPR repeat-containing 99.6 1.8E-14 4E-19 117.8 16.4 255 4-300 178-445 (478)
58 PLN02789 farnesyltranstransfer 99.6 4.1E-14 8.9E-19 120.7 19.2 120 3-122 67-189 (320)
59 PRK10370 formate-dependent nit 99.6 1.1E-14 2.5E-19 116.2 14.5 113 3-115 69-184 (198)
60 KOG2003 TPR repeat-containing 99.6 3E-15 6.6E-20 127.2 11.2 195 6-213 489-693 (840)
61 PF13429 TPR_15: Tetratricopep 99.6 1.2E-15 2.6E-20 129.6 8.9 230 3-240 40-277 (280)
62 KOG1840 Kinesin light chain [C 99.6 1.1E-14 2.3E-19 129.8 13.8 235 37-271 195-471 (508)
63 KOG2003 TPR repeat-containing 99.6 6.4E-15 1.4E-19 125.3 11.6 224 10-240 457-689 (840)
64 PRK15179 Vi polysaccharide bio 99.6 2.9E-14 6.2E-19 132.9 16.4 130 3-132 82-211 (694)
65 KOG0543 FKBP-type peptidyl-pro 99.6 8.4E-14 1.8E-18 117.6 16.1 123 6-128 207-344 (397)
66 PRK14574 hmsH outer membrane p 99.6 6.8E-14 1.5E-18 132.7 16.9 131 2-132 29-159 (822)
67 KOG2076 RNA polymerase III tra 99.6 3.8E-13 8.2E-18 123.0 20.3 105 2-106 168-272 (895)
68 KOG1156 N-terminal acetyltrans 99.6 3.2E-13 7E-18 119.5 19.2 244 4-260 4-263 (700)
69 KOG1129 TPR repeat-containing 99.6 6.5E-14 1.4E-18 114.6 12.7 233 11-286 227-465 (478)
70 COG5010 TadD Flp pilus assembl 99.6 1.7E-13 3.6E-18 109.3 14.7 129 3-131 96-224 (257)
71 PRK14574 hmsH outer membrane p 99.6 4.9E-13 1.1E-17 127.0 20.4 271 4-275 99-441 (822)
72 KOG4234 TPR repeat-containing 99.6 4.7E-13 1E-17 102.2 16.0 124 5-128 93-221 (271)
73 TIGR02552 LcrH_SycD type III s 99.5 1.1E-13 2.3E-18 104.3 12.5 105 28-132 4-108 (135)
74 KOG4648 Uncharacterized conser 99.5 3.9E-14 8.5E-19 116.6 10.2 226 10-247 100-337 (536)
75 TIGR03302 OM_YfiO outer membra 99.5 3E-13 6.5E-18 111.9 15.4 129 4-132 67-226 (235)
76 TIGR02795 tol_pal_ybgF tol-pal 99.5 3.4E-13 7.3E-18 99.0 14.0 107 7-113 2-114 (119)
77 PRK14720 transcript cleavage f 99.5 9.1E-13 2E-17 124.1 19.6 230 3-240 27-283 (906)
78 PRK10747 putative protoheme IX 99.5 1.3E-12 2.9E-17 116.1 19.4 224 9-241 120-391 (398)
79 KOG0624 dsRNA-activated protei 99.5 1.7E-12 3.6E-17 107.1 17.7 214 9-255 157-380 (504)
80 KOG1127 TPR repeat-containing 99.5 8.9E-13 1.9E-17 121.6 17.6 178 4-181 489-703 (1238)
81 PRK02603 photosystem I assembl 99.5 6.7E-13 1.5E-17 104.1 14.5 106 3-108 31-153 (172)
82 KOG1130 Predicted G-alpha GTPa 99.5 9.4E-14 2E-18 116.9 9.9 264 7-272 17-337 (639)
83 PF13414 TPR_11: TPR repeat; P 99.5 1E-13 2.2E-18 91.3 8.0 67 40-106 2-69 (69)
84 COG5010 TadD Flp pilus assembl 99.5 6.3E-13 1.4E-17 106.0 13.5 129 3-132 63-191 (257)
85 PRK15331 chaperone protein Sic 99.5 1.4E-12 3E-17 97.9 14.2 110 3-113 33-142 (165)
86 PF13414 TPR_11: TPR repeat; P 99.5 9.7E-14 2.1E-18 91.5 7.1 67 6-72 2-69 (69)
87 cd00189 TPR Tetratricopeptide 99.5 8E-13 1.7E-17 92.3 12.3 99 9-107 2-100 (100)
88 KOG0550 Molecular chaperone (D 99.5 2.3E-13 5.1E-18 114.5 10.5 237 3-241 79-351 (486)
89 KOG4162 Predicted calmodulin-b 99.5 2.8E-12 6E-17 115.7 16.8 260 7-278 433-782 (799)
90 COG2956 Predicted N-acetylgluc 99.5 1.5E-11 3.2E-16 100.8 19.5 222 10-240 38-278 (389)
91 TIGR00540 hemY_coli hemY prote 99.5 6.2E-12 1.4E-16 112.4 19.2 233 4-240 115-399 (409)
92 KOG1156 N-terminal acetyltrans 99.5 8.8E-12 1.9E-16 110.5 18.9 215 3-217 37-256 (700)
93 CHL00033 ycf3 photosystem I as 99.5 4.1E-12 8.8E-17 99.3 14.9 106 4-109 32-154 (168)
94 PRK15363 pathogenicity island 99.4 4.8E-12 1E-16 94.6 14.3 100 33-132 26-126 (157)
95 COG4783 Putative Zn-dependent 99.4 7.6E-12 1.7E-16 107.9 17.0 128 4-131 303-430 (484)
96 KOG0495 HAT repeat protein [RN 99.4 5.5E-12 1.2E-16 111.9 16.0 232 6-256 650-891 (913)
97 PRK10866 outer membrane biogen 99.4 4.4E-11 9.6E-16 98.5 20.1 173 6-204 31-236 (243)
98 PF12895 Apc3: Anaphase-promot 99.4 4.7E-13 1E-17 91.8 7.0 82 19-101 1-84 (84)
99 CHL00033 ycf3 photosystem I as 99.4 1.2E-11 2.5E-16 96.7 14.9 139 17-188 9-152 (168)
100 PF13525 YfiO: Outer membrane 99.4 7E-11 1.5E-15 95.1 19.1 168 5-198 3-196 (203)
101 KOG1130 Predicted G-alpha GTPa 99.4 1E-12 2.2E-17 110.8 7.8 261 8-268 56-373 (639)
102 PF13432 TPR_16: Tetratricopep 99.4 2.5E-12 5.4E-17 83.6 8.0 64 46-109 2-65 (65)
103 KOG3060 Uncharacterized conser 99.4 1.4E-10 2.9E-15 92.2 18.1 121 4-124 83-203 (289)
104 KOG1174 Anaphase-promoting com 99.4 2.7E-11 5.8E-16 102.3 14.9 257 14-282 203-503 (564)
105 COG4235 Cytochrome c biogenesi 99.4 1.8E-11 3.8E-16 100.3 13.4 112 2-113 151-265 (287)
106 PRK10803 tol-pal system protei 99.4 3.6E-11 7.9E-16 99.7 15.5 108 6-113 141-255 (263)
107 cd05804 StaR_like StaR_like; a 99.4 2.9E-11 6.2E-16 106.4 15.9 166 7-175 43-212 (355)
108 PRK02603 photosystem I assembl 99.4 1.5E-11 3.3E-16 96.5 12.4 118 38-188 32-152 (172)
109 PF13432 TPR_16: Tetratricopep 99.4 4.1E-12 8.8E-17 82.5 7.7 65 11-75 1-65 (65)
110 PRK15179 Vi polysaccharide bio 99.4 4.7E-11 1E-15 111.6 17.6 143 35-183 80-222 (694)
111 KOG0553 TPR repeat-containing 99.3 8.4E-12 1.8E-16 101.5 10.4 100 42-143 82-181 (304)
112 KOG3060 Uncharacterized conser 99.3 3.1E-10 6.7E-15 90.2 18.5 168 10-187 55-222 (289)
113 COG2956 Predicted N-acetylgluc 99.3 3.5E-10 7.7E-15 92.8 18.8 204 3-213 65-282 (389)
114 cd05804 StaR_like StaR_like; a 99.3 6.4E-11 1.4E-15 104.2 15.8 203 2-211 1-217 (355)
115 PF12569 NARP1: NMDA receptor- 99.3 3.9E-10 8.5E-15 102.0 20.0 197 6-213 37-338 (517)
116 KOG1127 TPR repeat-containing 99.3 1.3E-11 2.9E-16 114.1 9.1 197 55-291 472-671 (1238)
117 COG4785 NlpI Lipoprotein NlpI, 99.3 3.4E-10 7.5E-15 87.9 14.9 110 2-111 60-169 (297)
118 KOG4162 Predicted calmodulin-b 99.2 1.9E-10 4.1E-15 104.1 14.4 126 8-133 651-778 (799)
119 KOG1128 Uncharacterized conser 99.2 6.6E-11 1.4E-15 106.4 10.0 129 5-133 483-611 (777)
120 cd00189 TPR Tetratricopeptide 99.2 4.9E-10 1.1E-14 77.9 12.3 90 43-132 2-91 (100)
121 PLN03081 pentatricopeptide (PP 99.2 3.3E-10 7.1E-15 108.3 14.9 251 6-274 289-552 (697)
122 COG3071 HemY Uncharacterized e 99.2 1.1E-08 2.3E-13 86.5 21.8 263 7-275 84-386 (400)
123 KOG4555 TPR repeat-containing 99.2 1.1E-09 2.4E-14 78.1 13.4 102 7-108 43-148 (175)
124 PF12688 TPR_5: Tetratrico pep 99.2 7.4E-10 1.6E-14 80.2 12.9 96 8-103 2-103 (120)
125 PF13512 TPR_18: Tetratricopep 99.2 1.4E-09 3.1E-14 80.0 14.1 108 5-112 8-136 (142)
126 PLN03088 SGT1, suppressor of 99.2 2.6E-10 5.7E-15 99.6 12.2 89 44-132 5-93 (356)
127 PLN03218 maturation of RBCL 1; 99.2 2.4E-09 5.1E-14 104.9 19.4 250 7-270 507-774 (1060)
128 PF14559 TPR_19: Tetratricopep 99.2 1.3E-10 2.9E-15 76.1 7.2 66 18-83 2-67 (68)
129 PF13371 TPR_9: Tetratricopept 99.2 2.7E-10 5.9E-15 75.7 8.5 66 48-113 2-67 (73)
130 PF09976 TPR_21: Tetratricopep 99.2 9E-10 2E-14 83.8 12.4 127 5-132 9-141 (145)
131 KOG4642 Chaperone-dependent E3 99.2 1.4E-10 3E-15 91.2 7.9 100 5-104 8-107 (284)
132 PRK10153 DNA-binding transcrip 99.2 1.9E-09 4.1E-14 98.1 16.5 128 5-133 337-477 (517)
133 PLN03218 maturation of RBCL 1; 99.2 3E-09 6.5E-14 104.2 18.9 252 8-275 473-744 (1060)
134 PF09976 TPR_21: Tetratricopep 99.1 4.1E-09 9E-14 80.1 15.6 94 7-101 48-144 (145)
135 KOG1128 Uncharacterized conser 99.1 9.9E-10 2.2E-14 99.1 13.8 124 7-131 424-575 (777)
136 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.1E-09 2.3E-14 80.3 11.8 92 41-132 2-99 (119)
137 PF13371 TPR_9: Tetratricopept 99.1 3.7E-10 8E-15 75.1 8.4 70 14-83 2-71 (73)
138 PRK11906 transcriptional regul 99.1 2.5E-09 5.4E-14 93.1 15.4 124 9-132 257-395 (458)
139 PF14559 TPR_19: Tetratricopep 99.1 2E-10 4.4E-15 75.2 6.8 67 51-117 1-67 (68)
140 COG4235 Cytochrome c biogenesi 99.1 2.1E-09 4.5E-14 88.3 13.8 110 22-131 137-249 (287)
141 COG4783 Putative Zn-dependent 99.1 4.5E-09 9.7E-14 91.1 16.0 155 37-211 302-456 (484)
142 PRK14720 transcript cleavage f 99.1 2E-09 4.4E-14 101.9 14.7 202 35-261 25-268 (906)
143 KOG0376 Serine-threonine phosp 99.1 2.9E-10 6.4E-15 98.3 7.8 118 7-124 4-121 (476)
144 KOG0545 Aryl-hydrocarbon recep 99.1 5.2E-09 1.1E-13 82.9 13.9 107 6-112 177-301 (329)
145 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 6.8E-10 1.5E-14 96.4 9.8 68 37-104 71-141 (453)
146 PF12895 Apc3: Anaphase-promot 99.1 2.8E-10 6E-15 77.9 5.7 78 54-132 2-81 (84)
147 KOG2376 Signal recognition par 99.1 3.2E-08 6.9E-13 87.6 19.6 202 8-213 13-257 (652)
148 COG1729 Uncharacterized protei 99.1 1.1E-08 2.3E-13 83.2 15.0 107 8-114 142-254 (262)
149 PF12688 TPR_5: Tetratrico pep 99.1 1.3E-08 2.9E-13 73.7 14.0 92 41-132 1-98 (120)
150 PLN03081 pentatricopeptide (PP 99.1 4.9E-09 1.1E-13 100.3 15.3 121 7-133 158-314 (697)
151 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 9.9E-09 2.1E-13 89.6 15.6 114 15-131 177-290 (395)
152 PF14938 SNAP: Soluble NSF att 99.0 4.5E-09 9.7E-14 89.2 13.2 180 6-216 34-232 (282)
153 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 1.2E-09 2.5E-14 94.9 9.6 70 2-71 70-142 (453)
154 COG4105 ComL DNA uptake lipopr 99.0 1.2E-07 2.6E-12 76.4 20.3 171 6-202 33-226 (254)
155 PF06552 TOM20_plant: Plant sp 99.0 4.6E-09 9.9E-14 79.8 11.3 96 23-118 7-123 (186)
156 PRK10866 outer membrane biogen 99.0 1.3E-08 2.9E-13 83.9 15.1 195 39-270 30-232 (243)
157 PRK11906 transcriptional regul 99.0 1E-08 2.2E-13 89.3 14.2 109 3-111 291-408 (458)
158 PF13424 TPR_12: Tetratricopep 99.0 6.7E-10 1.5E-14 74.9 4.2 64 41-104 5-75 (78)
159 PRK15331 chaperone protein Sic 99.0 1.7E-08 3.7E-13 76.0 11.7 97 36-132 32-128 (165)
160 PF13424 TPR_12: Tetratricopep 98.9 2.3E-09 5.1E-14 72.2 6.2 68 4-71 2-76 (78)
161 KOG3785 Uncharacterized conser 98.9 5.9E-08 1.3E-12 81.0 14.9 190 15-218 30-223 (557)
162 PRK04841 transcriptional regul 98.9 1.6E-07 3.4E-12 92.9 20.6 267 7-275 452-756 (903)
163 PF12569 NARP1: NMDA receptor- 98.9 3E-08 6.4E-13 89.9 13.9 141 42-182 195-338 (517)
164 KOG0543 FKBP-type peptidyl-pro 98.9 2.4E-08 5.1E-13 85.1 11.8 100 7-106 257-357 (397)
165 PLN03077 Protein ECB2; Provisi 98.9 3.9E-08 8.5E-13 96.4 15.2 258 7-275 354-650 (857)
166 PRK10803 tol-pal system protei 98.9 3.3E-08 7.1E-13 82.2 12.5 92 41-132 142-240 (263)
167 PRK10153 DNA-binding transcrip 98.9 3E-08 6.5E-13 90.4 13.0 107 3-110 372-488 (517)
168 PLN03077 Protein ECB2; Provisi 98.9 1E-07 2.2E-12 93.5 17.3 242 7-270 424-711 (857)
169 PF13525 YfiO: Outer membrane 98.9 1.2E-07 2.5E-12 76.4 14.4 126 3-128 38-197 (203)
170 KOG0551 Hsp90 co-chaperone CNS 98.8 4.3E-08 9.4E-13 81.0 11.2 107 5-111 79-189 (390)
171 KOG1915 Cell cycle control pro 98.8 7.6E-07 1.6E-11 77.2 18.5 257 6-275 72-347 (677)
172 KOG3785 Uncharacterized conser 98.8 6.9E-07 1.5E-11 74.8 17.1 121 11-131 61-207 (557)
173 PF04733 Coatomer_E: Coatomer 98.8 3.1E-07 6.7E-12 77.7 14.6 121 6-126 130-252 (290)
174 PF09295 ChAPs: ChAPs (Chs5p-A 98.8 9E-08 1.9E-12 83.7 11.4 98 7-104 200-297 (395)
175 KOG4340 Uncharacterized conser 98.7 1.4E-07 3.1E-12 77.1 10.8 176 18-210 21-208 (459)
176 KOG2376 Signal recognition par 98.7 1.7E-06 3.7E-11 76.9 17.9 124 3-133 42-199 (652)
177 KOG4648 Uncharacterized conser 98.7 4.4E-08 9.5E-13 81.5 7.4 221 44-275 100-326 (536)
178 COG4700 Uncharacterized protei 98.7 1.5E-06 3.2E-11 66.4 14.5 122 7-129 89-213 (251)
179 PF06552 TOM20_plant: Plant sp 98.7 3.3E-07 7.2E-12 69.8 11.0 68 57-124 7-84 (186)
180 PF13428 TPR_14: Tetratricopep 98.6 1.1E-07 2.4E-12 56.0 5.3 41 76-116 2-42 (44)
181 KOG1308 Hsp70-interacting prot 98.6 2.3E-08 5.1E-13 83.0 3.1 100 8-107 115-214 (377)
182 COG3071 HemY Uncharacterized e 98.6 4.1E-05 8.8E-10 65.3 22.3 241 6-246 117-396 (400)
183 PRK04841 transcriptional regul 98.6 3.7E-06 8E-11 83.3 18.7 239 7-245 491-765 (903)
184 PF14938 SNAP: Soluble NSF att 98.6 3.7E-07 7.9E-12 77.5 10.1 126 6-132 74-219 (282)
185 PF13428 TPR_14: Tetratricopep 98.6 1.3E-07 2.8E-12 55.7 5.1 42 42-83 2-43 (44)
186 KOG4340 Uncharacterized conser 98.6 1.5E-06 3.3E-11 71.2 12.4 130 3-132 40-201 (459)
187 COG1729 Uncharacterized protei 98.6 1.2E-06 2.7E-11 71.3 11.7 89 44-132 144-238 (262)
188 COG0457 NrfG FOG: TPR repeat [ 98.6 2.2E-05 4.7E-10 63.6 19.4 98 9-106 61-161 (291)
189 COG4785 NlpI Lipoprotein NlpI, 98.6 4.9E-07 1.1E-11 70.6 8.7 92 40-131 64-155 (297)
190 KOG4555 TPR repeat-containing 98.5 3.8E-06 8.2E-11 60.3 12.3 89 42-130 44-136 (175)
191 PF13431 TPR_17: Tetratricopep 98.5 7.4E-08 1.6E-12 53.0 2.9 32 64-95 2-33 (34)
192 PF13431 TPR_17: Tetratricopep 98.5 1.1E-07 2.3E-12 52.4 3.0 34 29-62 1-34 (34)
193 PF00515 TPR_1: Tetratricopept 98.5 3.3E-07 7.1E-12 50.7 4.3 32 76-107 2-33 (34)
194 KOG2047 mRNA splicing factor [ 98.5 3.9E-05 8.4E-10 69.3 19.2 223 2-240 344-615 (835)
195 COG0457 NrfG FOG: TPR repeat [ 98.5 2.7E-05 5.9E-10 63.0 17.5 129 3-131 91-224 (291)
196 PF04733 Coatomer_E: Coatomer 98.4 2.1E-06 4.6E-11 72.7 10.8 107 6-112 164-273 (290)
197 KOG4234 TPR repeat-containing 98.4 4.7E-06 1E-10 64.4 11.4 92 41-132 95-191 (271)
198 PF00515 TPR_1: Tetratricopept 98.4 4E-07 8.8E-12 50.3 4.0 32 42-73 2-33 (34)
199 PF07719 TPR_2: Tetratricopept 98.4 9.9E-07 2.1E-11 48.7 4.9 33 76-108 2-34 (34)
200 COG4700 Uncharacterized protei 98.4 9.3E-05 2E-09 56.8 16.7 116 15-131 64-182 (251)
201 KOG4642 Chaperone-dependent E3 98.4 9E-07 1.9E-11 70.1 5.9 90 44-133 13-102 (284)
202 PF07719 TPR_2: Tetratricopept 98.3 1.6E-06 3.4E-11 47.8 4.7 33 42-74 2-34 (34)
203 KOG1941 Acetylcholine receptor 98.3 3.6E-05 7.8E-10 65.0 14.6 88 42-129 84-182 (518)
204 KOG1941 Acetylcholine receptor 98.3 1.5E-05 3.3E-10 67.1 12.1 123 8-130 123-267 (518)
205 PF05843 Suf: Suppressor of fo 98.3 2.7E-05 6E-10 65.9 14.0 125 8-132 2-130 (280)
206 PF13512 TPR_18: Tetratricopep 98.3 5.7E-05 1.2E-09 55.9 13.4 82 40-121 9-96 (142)
207 KOG2610 Uncharacterized conser 98.3 6.7E-05 1.5E-09 62.8 14.7 125 8-132 104-232 (491)
208 PF03704 BTAD: Bacterial trans 98.2 6.1E-05 1.3E-09 57.2 13.7 96 8-103 7-124 (146)
209 KOG1586 Protein required for f 98.2 0.0011 2.4E-08 52.8 20.5 127 6-133 33-178 (288)
210 KOG1070 rRNA processing protei 98.2 8.9E-05 1.9E-09 72.4 17.0 126 2-128 1453-1583(1710)
211 KOG2047 mRNA splicing factor [ 98.2 0.00046 9.9E-09 62.6 19.6 126 8-133 388-535 (835)
212 KOG1915 Cell cycle control pro 98.2 0.00018 3.8E-09 63.0 16.2 116 18-134 377-496 (677)
213 KOG2053 Mitochondrial inherita 98.2 0.00065 1.4E-08 63.8 20.9 110 17-127 19-128 (932)
214 COG4105 ComL DNA uptake lipopr 98.2 0.0004 8.7E-09 56.4 17.3 78 41-118 34-117 (254)
215 KOG1585 Protein required for f 98.1 0.0015 3.2E-08 52.5 19.4 121 8-128 32-169 (308)
216 KOG1308 Hsp70-interacting prot 98.1 2.8E-06 6.1E-11 70.9 3.7 105 51-155 124-228 (377)
217 KOG2796 Uncharacterized conser 98.0 9.9E-05 2.1E-09 59.8 11.0 107 3-109 208-320 (366)
218 PF13181 TPR_8: Tetratricopept 98.0 1.1E-05 2.4E-10 44.4 4.1 31 76-106 2-32 (34)
219 PF13181 TPR_8: Tetratricopept 98.0 1.3E-05 2.8E-10 44.1 3.9 32 42-73 2-33 (34)
220 KOG2796 Uncharacterized conser 98.0 0.00073 1.6E-08 54.9 15.0 125 8-132 178-309 (366)
221 KOG3081 Vesicle coat complex C 98.0 0.0015 3.1E-08 53.3 16.6 113 15-129 145-261 (299)
222 KOG3617 WD40 and TPR repeat-co 97.9 0.0038 8.3E-08 58.5 20.3 104 41-144 858-1002(1416)
223 KOG2471 TPR repeat-containing 97.9 4.1E-05 8.9E-10 67.0 7.5 118 5-122 238-382 (696)
224 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00021 4.6E-09 59.7 10.6 92 41-132 81-176 (390)
225 COG3118 Thioredoxin domain-con 97.9 0.00095 2.1E-08 55.2 14.3 122 7-131 134-258 (304)
226 KOG0376 Serine-threonine phosp 97.8 3.2E-05 7E-10 67.6 5.1 90 44-133 7-96 (476)
227 KOG3081 Vesicle coat complex C 97.8 0.0017 3.7E-08 52.9 14.3 240 9-269 11-260 (299)
228 COG2976 Uncharacterized protei 97.8 0.00076 1.7E-08 52.3 11.8 100 8-109 90-193 (207)
229 KOG1310 WD40 repeat protein [G 97.8 0.00013 2.9E-09 64.5 8.6 107 4-110 371-480 (758)
230 KOG4507 Uncharacterized conser 97.8 9.4E-05 2E-09 66.2 7.5 106 14-119 614-720 (886)
231 PRK10941 hypothetical protein; 97.7 0.00056 1.2E-08 57.0 11.5 78 41-118 181-258 (269)
232 KOG0545 Aryl-hydrocarbon recep 97.7 0.00051 1.1E-08 55.1 10.2 90 41-130 178-285 (329)
233 KOG1586 Protein required for f 97.7 0.0055 1.2E-07 49.1 15.5 102 8-110 75-189 (288)
234 PF04781 DUF627: Protein of un 97.7 0.00083 1.8E-08 47.2 9.8 92 13-104 2-107 (111)
235 PF12968 DUF3856: Domain of Un 97.7 0.0027 5.8E-08 45.1 12.2 94 11-104 13-129 (144)
236 KOG1070 rRNA processing protei 97.7 0.0028 6E-08 62.6 16.3 114 13-126 1536-1651(1710)
237 PF13174 TPR_6: Tetratricopept 97.6 0.00011 2.5E-09 39.8 4.2 31 77-107 2-32 (33)
238 KOG1585 Protein required for f 97.6 0.019 4.1E-07 46.4 17.8 196 41-238 31-250 (308)
239 PRK10941 hypothetical protein; 97.6 0.00099 2.1E-08 55.6 11.2 77 9-85 183-259 (269)
240 KOG3824 Huntingtin interacting 97.6 0.00037 8E-09 57.8 8.4 74 44-117 119-192 (472)
241 PF05843 Suf: Suppressor of fo 97.6 0.0018 3.9E-08 54.9 13.0 137 42-181 2-139 (280)
242 PF10300 DUF3808: Protein of u 97.6 0.00053 1.1E-08 62.4 10.2 113 20-132 246-370 (468)
243 KOG2053 Mitochondrial inherita 97.6 0.0015 3.3E-08 61.5 13.1 123 3-126 39-162 (932)
244 PF04184 ST7: ST7 protein; In 97.6 0.0011 2.3E-08 58.8 11.5 117 14-132 175-318 (539)
245 PF10300 DUF3808: Protein of u 97.6 0.0015 3.2E-08 59.5 12.7 76 56-131 248-327 (468)
246 PF13281 DUF4071: Domain of un 97.6 0.0098 2.1E-07 51.8 16.9 114 9-123 143-273 (374)
247 PF13176 TPR_7: Tetratricopept 97.5 0.00017 3.7E-09 40.1 4.0 26 78-103 2-27 (36)
248 PF13174 TPR_6: Tetratricopept 97.5 0.00016 3.5E-09 39.2 3.9 31 43-73 2-32 (33)
249 KOG3824 Huntingtin interacting 97.5 0.00055 1.2E-08 56.8 8.1 80 6-85 115-194 (472)
250 PF14853 Fis1_TPR_C: Fis1 C-te 97.5 0.0012 2.5E-08 40.1 7.4 39 77-115 3-41 (53)
251 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0051 1.1E-07 46.6 12.0 111 3-115 6-116 (160)
252 PF03704 BTAD: Bacterial trans 97.4 0.0013 2.9E-08 49.8 8.9 63 7-69 62-124 (146)
253 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00089 1.9E-08 40.6 6.2 43 42-84 2-44 (53)
254 PF13176 TPR_7: Tetratricopept 97.4 0.00031 6.8E-09 39.0 3.8 25 44-68 2-26 (36)
255 KOG3617 WD40 and TPR repeat-co 97.4 0.026 5.6E-07 53.3 17.8 96 9-104 860-996 (1416)
256 smart00028 TPR Tetratricopepti 97.4 0.00038 8.2E-09 37.0 3.9 31 77-107 3-33 (34)
257 PF08424 NRDE-2: NRDE-2, neces 97.3 0.052 1.1E-06 47.0 18.9 91 28-118 6-108 (321)
258 KOG2396 HAT (Half-A-TPR) repea 97.3 0.0052 1.1E-07 54.5 12.1 95 24-118 88-183 (568)
259 PF14561 TPR_20: Tetratricopep 97.3 0.0047 1E-07 42.4 9.6 64 61-124 8-73 (90)
260 PF14561 TPR_20: Tetratricopep 97.2 0.003 6.6E-08 43.3 7.9 75 26-100 7-83 (90)
261 smart00028 TPR Tetratricopepti 97.2 0.00068 1.5E-08 36.0 3.9 32 42-73 2-33 (34)
262 PF02259 FAT: FAT domain; Int 97.2 0.022 4.7E-07 49.9 15.3 121 3-123 142-306 (352)
263 KOG2471 TPR repeat-containing 97.1 0.00071 1.5E-08 59.6 4.5 80 8-87 284-381 (696)
264 KOG1464 COP9 signalosome, subu 97.1 0.034 7.3E-07 45.7 13.6 198 54-252 40-272 (440)
265 PF09986 DUF2225: Uncharacteri 97.1 0.02 4.4E-07 46.3 12.4 91 19-109 89-199 (214)
266 TIGR02561 HrpB1_HrpK type III 97.0 0.022 4.8E-07 42.4 11.1 92 2-93 5-96 (153)
267 KOG2610 Uncharacterized conser 97.0 0.059 1.3E-06 45.7 14.5 130 4-133 134-271 (491)
268 PF08631 SPO22: Meiosis protei 97.0 0.19 4.1E-06 42.6 20.6 100 7-106 35-152 (278)
269 COG4976 Predicted methyltransf 96.9 0.0017 3.7E-08 51.7 4.8 57 52-108 6-62 (287)
270 COG3898 Uncharacterized membra 96.9 0.26 5.7E-06 42.8 19.3 194 11-213 88-296 (531)
271 KOG0546 HSP90 co-chaperone CPR 96.9 0.0029 6.4E-08 53.6 6.2 119 8-126 223-360 (372)
272 PF10602 RPN7: 26S proteasome 96.8 0.035 7.5E-07 43.5 11.7 96 8-103 37-141 (177)
273 PF04781 DUF627: Protein of un 96.8 0.019 4.1E-07 40.5 9.0 83 47-129 2-98 (111)
274 PF15015 NYD-SP12_N: Spermatog 96.8 0.013 2.8E-07 50.9 9.5 91 12-102 181-289 (569)
275 PF13281 DUF4071: Domain of un 96.8 0.16 3.4E-06 44.5 16.2 82 40-121 140-229 (374)
276 PF04184 ST7: ST7 protein; In 96.7 0.044 9.5E-07 49.0 12.7 74 41-114 259-335 (539)
277 KOG0530 Protein farnesyltransf 96.7 0.069 1.5E-06 43.7 12.5 114 18-131 54-169 (318)
278 PF04910 Tcf25: Transcriptiona 96.6 0.33 7.2E-06 42.7 17.6 98 34-131 33-161 (360)
279 COG3118 Thioredoxin domain-con 96.6 0.037 8E-07 46.1 10.8 60 41-100 134-193 (304)
280 KOG2300 Uncharacterized conser 96.6 0.21 4.6E-06 44.6 15.9 194 19-213 287-518 (629)
281 KOG2449 Methylmalonate semiald 96.6 7E-05 1.5E-09 53.9 -4.3 95 222-316 54-149 (157)
282 KOG4507 Uncharacterized conser 96.6 0.023 4.9E-07 51.6 9.9 106 10-115 215-323 (886)
283 KOG1550 Extracellular protein 96.6 0.34 7.4E-06 45.4 18.3 116 8-129 289-417 (552)
284 KOG4814 Uncharacterized conser 96.5 0.034 7.5E-07 50.9 10.7 97 9-105 356-458 (872)
285 COG4976 Predicted methyltransf 96.5 0.0053 1.1E-07 49.0 5.0 60 16-75 4-63 (287)
286 PF08424 NRDE-2: NRDE-2, neces 96.5 0.21 4.5E-06 43.3 15.4 103 2-104 14-131 (321)
287 COG5191 Uncharacterized conser 96.5 0.0084 1.8E-07 50.0 6.3 89 30-118 96-185 (435)
288 KOG2300 Uncharacterized conser 96.5 0.4 8.8E-06 42.9 16.7 165 10-177 326-513 (629)
289 KOG3364 Membrane protein invol 96.5 0.17 3.7E-06 37.0 12.0 76 40-115 31-111 (149)
290 COG2912 Uncharacterized conser 96.5 0.03 6.5E-07 46.2 9.2 78 41-118 181-258 (269)
291 COG2976 Uncharacterized protei 96.4 0.31 6.8E-06 38.2 14.6 56 77-132 91-149 (207)
292 KOG1258 mRNA processing protei 96.4 0.34 7.3E-06 44.4 16.4 125 5-129 295-420 (577)
293 PF09613 HrpB1_HrpK: Bacterial 96.4 0.067 1.5E-06 40.6 10.3 87 41-127 10-96 (160)
294 KOG1839 Uncharacterized protei 96.3 0.082 1.8E-06 52.5 12.9 129 5-133 930-1081(1236)
295 COG2912 Uncharacterized conser 96.3 0.038 8.3E-07 45.6 9.1 74 12-85 186-259 (269)
296 PF13374 TPR_10: Tetratricopep 96.3 0.012 2.6E-07 33.5 4.5 29 76-104 3-31 (42)
297 COG3914 Spy Predicted O-linked 96.2 0.16 3.4E-06 46.4 13.0 105 13-117 73-184 (620)
298 KOG1550 Extracellular protein 96.1 0.11 2.4E-06 48.7 12.5 112 5-122 242-373 (552)
299 KOG3364 Membrane protein invol 96.1 0.11 2.3E-06 38.1 9.5 78 6-83 31-113 (149)
300 PF13374 TPR_10: Tetratricopep 96.1 0.014 3E-07 33.2 4.3 30 41-70 2-31 (42)
301 COG2909 MalT ATP-dependent tra 96.0 1.6 3.4E-05 42.2 19.0 123 7-129 415-557 (894)
302 COG0790 FOG: TPR repeat, SEL1 96.0 0.25 5.5E-06 42.1 13.4 94 22-119 92-197 (292)
303 PF10516 SHNi-TPR: SHNi-TPR; 96.0 0.014 3.1E-07 32.6 3.6 29 76-104 2-30 (38)
304 PF02259 FAT: FAT domain; Int 95.9 0.16 3.4E-06 44.5 11.7 102 6-107 183-341 (352)
305 PRK13184 pknD serine/threonine 95.7 0.096 2.1E-06 51.5 10.5 101 11-112 479-589 (932)
306 KOG1839 Uncharacterized protei 95.6 0.17 3.6E-06 50.5 11.5 128 4-131 970-1121(1236)
307 KOG0529 Protein geranylgeranyl 95.6 0.22 4.8E-06 43.5 11.0 99 22-120 90-194 (421)
308 KOG1464 COP9 signalosome, subu 95.5 0.36 7.9E-06 39.9 11.2 51 19-69 39-93 (440)
309 PF12862 Apc5: Anaphase-promot 95.4 0.095 2.1E-06 36.3 6.9 56 51-106 8-72 (94)
310 PF10373 EST1_DNA_bind: Est1 D 95.4 0.068 1.5E-06 45.2 7.4 62 60-121 1-62 (278)
311 KOG3616 Selective LIM binding 95.3 0.6 1.3E-05 44.1 13.3 60 42-101 662-732 (1636)
312 PF07720 TPR_3: Tetratricopept 95.3 0.068 1.5E-06 29.5 4.6 20 44-63 4-23 (36)
313 KOG1914 mRNA cleavage and poly 95.3 0.88 1.9E-05 41.4 13.7 73 31-104 10-82 (656)
314 PF10579 Rapsyn_N: Rapsyn N-te 95.1 0.33 7.1E-06 32.0 8.0 34 7-40 6-39 (80)
315 KOG4151 Myosin assembly protei 95.1 0.15 3.3E-06 48.0 9.0 115 6-120 52-172 (748)
316 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.039 8.4E-07 30.8 3.3 28 9-36 3-30 (38)
317 COG3914 Spy Predicted O-linked 95.0 1.5 3.3E-05 40.3 14.7 104 25-128 49-161 (620)
318 PF04910 Tcf25: Transcriptiona 95.0 2.1 4.6E-05 37.7 15.6 101 3-103 36-167 (360)
319 PF09986 DUF2225: Uncharacteri 95.0 0.36 7.7E-06 39.1 10.0 79 5-83 116-208 (214)
320 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.34 7.4E-06 31.9 7.8 63 42-104 7-72 (80)
321 KOG4814 Uncharacterized conser 95.0 0.28 6.1E-06 45.3 10.0 90 42-131 355-450 (872)
322 PF07079 DUF1347: Protein of u 95.0 0.75 1.6E-05 40.9 12.3 122 9-133 381-519 (549)
323 PF12862 Apc5: Anaphase-promot 94.9 0.11 2.3E-06 36.0 6.0 57 16-72 7-72 (94)
324 TIGR02561 HrpB1_HrpK type III 94.9 0.46 1E-05 35.6 9.3 86 42-127 11-96 (153)
325 KOG2396 HAT (Half-A-TPR) repea 94.7 0.22 4.7E-06 44.6 8.6 75 6-80 104-179 (568)
326 KOG0530 Protein farnesyltransf 94.7 0.6 1.3E-05 38.5 10.3 112 4-115 74-187 (318)
327 KOG1258 mRNA processing protei 94.7 2 4.3E-05 39.6 14.6 192 17-213 265-474 (577)
328 KOG1310 WD40 repeat protein [G 94.6 0.14 2.9E-06 46.2 7.1 89 44-132 377-468 (758)
329 PF07720 TPR_3: Tetratricopept 94.6 0.15 3.3E-06 28.1 4.9 33 76-108 2-36 (36)
330 PF12968 DUF3856: Domain of Un 94.6 0.57 1.2E-05 33.6 8.7 65 6-70 54-129 (144)
331 COG3898 Uncharacterized membra 94.5 3.1 6.7E-05 36.5 18.6 98 6-104 119-217 (531)
332 PF07721 TPR_4: Tetratricopept 94.3 0.067 1.4E-06 27.0 2.8 22 77-98 3-24 (26)
333 KOG0985 Vesicle coat protein c 94.3 3.3 7.1E-05 40.9 15.7 58 41-103 1104-1161(1666)
334 COG3629 DnrI DNA-binding trans 94.3 0.33 7.1E-06 40.7 8.3 63 41-103 153-215 (280)
335 PF07721 TPR_4: Tetratricopept 94.3 0.082 1.8E-06 26.7 3.1 24 42-65 2-25 (26)
336 PF08631 SPO22: Meiosis protei 94.2 1.8 3.9E-05 36.7 13.1 112 17-128 3-140 (278)
337 PF10602 RPN7: 26S proteasome 94.2 0.88 1.9E-05 35.6 10.3 62 42-103 37-101 (177)
338 COG3629 DnrI DNA-binding trans 94.0 0.47 1E-05 39.8 8.7 65 6-70 152-216 (280)
339 COG5191 Uncharacterized conser 94.0 0.097 2.1E-06 44.0 4.6 77 4-80 104-181 (435)
340 KOG0985 Vesicle coat protein c 93.9 7.5 0.00016 38.6 18.5 113 6-131 1103-1242(1666)
341 COG3947 Response regulator con 93.5 0.39 8.4E-06 40.1 7.2 56 45-100 283-338 (361)
342 PF11207 DUF2989: Protein of u 93.4 0.49 1.1E-05 37.5 7.3 71 56-128 121-197 (203)
343 PF10373 EST1_DNA_bind: Est1 D 93.4 0.4 8.8E-06 40.4 7.7 62 26-87 1-62 (278)
344 PF07079 DUF1347: Protein of u 93.3 1.1 2.3E-05 40.0 9.9 52 48-100 469-520 (549)
345 PF15015 NYD-SP12_N: Spermatog 93.3 0.5 1.1E-05 41.6 7.8 86 45-130 180-283 (569)
346 PRK15180 Vi polysaccharide bio 93.0 0.93 2E-05 40.7 9.2 113 16-128 298-410 (831)
347 KOG0529 Protein geranylgeranyl 93.0 1.2 2.7E-05 39.0 9.8 114 2-115 104-235 (421)
348 smart00386 HAT HAT (Half-A-TPR 93.0 0.35 7.5E-06 25.3 4.5 30 89-118 1-30 (33)
349 COG2909 MalT ATP-dependent tra 92.9 9.8 0.00021 37.1 18.9 197 7-206 458-685 (894)
350 KOG2041 WD40 repeat protein [G 92.6 9.8 0.00021 36.2 15.9 27 41-67 796-822 (1189)
351 COG3947 Response regulator con 92.2 0.64 1.4E-05 38.9 6.8 59 9-67 281-339 (361)
352 COG5159 RPN6 26S proteasome re 92.1 6.5 0.00014 33.1 14.6 170 11-180 7-237 (421)
353 PF10345 Cohesin_load: Cohesin 92.0 12 0.00026 35.8 19.1 83 24-107 38-131 (608)
354 cd02682 MIT_AAA_Arch MIT: doma 91.9 1.3 2.8E-05 29.0 6.6 30 6-35 5-34 (75)
355 PF14863 Alkyl_sulf_dimr: Alky 91.8 0.78 1.7E-05 34.3 6.4 54 40-93 69-122 (141)
356 PF10345 Cohesin_load: Cohesin 91.7 11 0.00024 36.0 15.7 109 4-113 56-179 (608)
357 PF10255 Paf67: RNA polymerase 91.5 0.47 1E-05 42.0 5.7 61 43-104 124-193 (404)
358 PF11207 DUF2989: Protein of u 91.4 1 2.2E-05 35.7 6.8 71 23-95 122-198 (203)
359 KOG0890 Protein kinase of the 91.1 3.9 8.5E-05 43.9 12.4 114 4-119 1667-1799(2382)
360 smart00386 HAT HAT (Half-A-TPR 90.8 0.74 1.6E-05 24.0 4.2 27 22-48 2-28 (33)
361 PRK15180 Vi polysaccharide bio 90.6 0.84 1.8E-05 40.9 6.3 106 3-108 319-424 (831)
362 COG0790 FOG: TPR repeat, SEL1 90.5 9.8 0.00021 32.3 14.0 106 13-122 47-161 (292)
363 KOG1914 mRNA cleavage and poly 90.3 15 0.00032 33.9 18.3 117 2-120 15-139 (656)
364 KOG3807 Predicted membrane pro 90.2 11 0.00025 32.4 15.6 96 9-106 186-306 (556)
365 PF10255 Paf67: RNA polymerase 90.0 0.74 1.6E-05 40.9 5.6 60 9-69 124-192 (404)
366 KOG0890 Protein kinase of the 89.8 34 0.00074 37.4 19.5 86 10-95 1452-1538(2382)
367 PF11817 Foie-gras_1: Foie gra 89.7 4 8.6E-05 33.9 9.5 55 43-97 180-240 (247)
368 KOG2422 Uncharacterized conser 89.5 18 0.00038 33.7 15.0 112 20-131 251-400 (665)
369 KOG0686 COP9 signalosome, subu 89.1 4.2 9E-05 35.9 9.2 109 8-116 151-278 (466)
370 PRK13184 pknD serine/threonine 89.1 6.4 0.00014 39.3 11.6 102 8-110 513-626 (932)
371 PF14863 Alkyl_sulf_dimr: Alky 89.1 2 4.3E-05 32.2 6.5 55 74-128 69-123 (141)
372 KOG0546 HSP90 co-chaperone CPR 89.0 0.42 9.1E-06 41.0 3.2 79 11-89 279-357 (372)
373 cd02682 MIT_AAA_Arch MIT: doma 89.0 4.2 9.2E-05 26.6 7.2 28 92-119 30-57 (75)
374 KOG2041 WD40 repeat protein [G 88.9 2.2 4.8E-05 40.2 7.8 84 5-100 794-877 (1189)
375 COG4941 Predicted RNA polymera 88.9 4.4 9.6E-05 34.8 9.0 95 22-117 311-407 (415)
376 PF10952 DUF2753: Protein of u 88.8 2.9 6.3E-05 30.2 6.7 66 9-74 3-87 (140)
377 KOG2581 26S proteasome regulat 88.7 5.9 0.00013 35.0 9.8 103 7-109 169-281 (493)
378 PF04053 Coatomer_WDAD: Coatom 88.6 19 0.00041 32.8 14.0 85 16-101 270-373 (443)
379 KOG2422 Uncharacterized conser 88.1 22 0.00048 33.1 15.2 100 2-101 279-404 (665)
380 COG4455 ImpE Protein of avirul 87.9 5.3 0.00011 32.3 8.4 59 16-74 10-68 (273)
381 PRK15490 Vi polysaccharide bio 87.8 15 0.00032 34.5 12.5 88 15-107 16-103 (578)
382 KOG3616 Selective LIM binding 87.6 28 0.00061 33.6 17.1 22 112-133 664-685 (1636)
383 PF09670 Cas_Cas02710: CRISPR- 87.0 19 0.00041 32.1 12.5 62 9-70 133-198 (379)
384 TIGR03504 FimV_Cterm FimV C-te 86.8 1.5 3.2E-05 25.4 3.6 25 79-103 3-27 (44)
385 COG4455 ImpE Protein of avirul 86.5 8.7 0.00019 31.1 8.8 62 49-110 9-70 (273)
386 TIGR03504 FimV_Cterm FimV C-te 85.7 1.8 3.9E-05 25.1 3.6 25 45-69 3-27 (44)
387 PF04212 MIT: MIT (microtubule 85.5 2.8 6E-05 26.9 5.0 28 7-34 5-32 (69)
388 cd02681 MIT_calpain7_1 MIT: do 85.5 2.3 5E-05 28.0 4.5 30 6-35 5-34 (76)
389 cd02683 MIT_1 MIT: domain cont 85.3 2.6 5.7E-05 27.8 4.8 27 7-33 6-32 (77)
390 PF04212 MIT: MIT (microtubule 85.3 1.7 3.8E-05 27.9 3.9 18 86-103 16-33 (69)
391 cd02681 MIT_calpain7_1 MIT: do 85.1 1.9 4E-05 28.4 3.9 17 87-103 18-34 (76)
392 cd02679 MIT_spastin MIT: domai 84.9 2 4.4E-05 28.5 4.0 35 55-104 3-37 (79)
393 PF11817 Foie-gras_1: Foie gra 84.6 7 0.00015 32.4 8.2 62 7-68 178-245 (247)
394 PF09797 NatB_MDM20: N-acetylt 83.3 11 0.00025 33.3 9.4 42 23-64 199-240 (365)
395 PHA02537 M terminase endonucle 83.0 2.4 5.2E-05 34.6 4.6 92 17-108 93-211 (230)
396 cd02680 MIT_calpain7_2 MIT: do 82.5 3.2 6.9E-05 27.2 4.2 33 57-104 3-35 (75)
397 KOG3783 Uncharacterized conser 81.8 35 0.00075 31.5 11.6 65 43-107 451-523 (546)
398 PF12854 PPR_1: PPR repeat 81.2 5.4 0.00012 21.4 4.2 26 41-66 7-32 (34)
399 KOG2561 Adaptor protein NUB1, 81.1 9.8 0.00021 34.0 7.8 96 9-104 165-296 (568)
400 COG5107 RNA14 Pre-mRNA 3'-end 80.1 46 0.001 30.2 11.8 78 29-106 30-107 (660)
401 KOG0128 RNA-binding protein SA 79.9 63 0.0014 31.6 15.3 98 21-119 93-193 (881)
402 PF12854 PPR_1: PPR repeat 79.8 5.2 0.00011 21.5 3.9 27 74-100 6-32 (34)
403 KOG3783 Uncharacterized conser 79.8 51 0.0011 30.5 14.6 87 24-112 250-340 (546)
404 PF13226 DUF4034: Domain of un 79.2 30 0.00065 29.2 9.9 118 14-131 7-155 (277)
405 KOG2114 Vacuolar assembly/sort 79.1 55 0.0012 32.1 12.4 59 14-73 341-401 (933)
406 smart00299 CLH Clathrin heavy 78.7 24 0.00052 26.1 11.0 49 16-65 16-64 (140)
407 PF07219 HemY_N: HemY protein 78.7 17 0.00036 25.8 7.3 50 6-55 58-107 (108)
408 KOG0276 Vesicle coat complex C 78.2 28 0.0006 32.7 9.9 94 26-128 626-727 (794)
409 PF04190 DUF410: Protein of un 78.1 39 0.00084 28.3 10.4 95 6-100 9-115 (260)
410 COG1747 Uncharacterized N-term 78.0 58 0.0013 30.1 12.0 112 6-119 98-249 (711)
411 PF11846 DUF3366: Domain of un 77.5 11 0.00024 29.8 6.8 49 58-107 128-176 (193)
412 TIGR02710 CRISPR-associated pr 77.3 53 0.0011 29.2 12.6 65 2-66 123-196 (380)
413 PF04053 Coatomer_WDAD: Coatom 77.1 16 0.00035 33.2 8.4 56 38-101 344-399 (443)
414 PF09205 DUF1955: Domain of un 77.1 21 0.00046 26.5 7.2 79 21-104 70-149 (161)
415 cd02678 MIT_VPS4 MIT: domain c 76.9 7.6 0.00016 25.4 4.7 28 7-34 6-33 (75)
416 cd02680 MIT_calpain7_2 MIT: do 76.7 5.6 0.00012 26.1 3.9 17 54-70 19-35 (75)
417 smart00745 MIT Microtubule Int 76.2 8.1 0.00018 25.3 4.8 24 10-33 11-34 (77)
418 cd02684 MIT_2 MIT: domain cont 75.2 6.9 0.00015 25.7 4.1 17 87-103 18-34 (75)
419 PF11846 DUF3366: Domain of un 74.1 15 0.00032 29.1 6.6 41 31-72 135-175 (193)
420 KOG1497 COP9 signalosome, subu 73.8 38 0.00082 29.2 8.9 94 76-170 104-205 (399)
421 PF01535 PPR: PPR repeat; Int 73.8 6.4 0.00014 19.9 3.2 23 80-102 5-27 (31)
422 COG4649 Uncharacterized protei 73.7 41 0.0009 26.3 13.0 124 10-133 61-191 (221)
423 PF12739 TRAPPC-Trs85: ER-Golg 73.5 70 0.0015 28.9 15.1 97 8-104 209-329 (414)
424 cd02656 MIT MIT: domain contai 73.5 11 0.00023 24.6 4.8 26 9-34 8-33 (75)
425 PF13041 PPR_2: PPR repeat fam 73.3 10 0.00023 22.2 4.4 31 74-104 2-32 (50)
426 KOG1538 Uncharacterized conser 73.2 89 0.0019 29.9 15.1 58 9-67 587-658 (1081)
427 PF09205 DUF1955: Domain of un 73.0 29 0.00063 25.8 7.1 115 13-132 8-143 (161)
428 cd02684 MIT_2 MIT: domain cont 72.9 10 0.00023 24.8 4.6 27 8-34 7-33 (75)
429 cd02678 MIT_VPS4 MIT: domain c 72.0 8.6 0.00019 25.1 4.1 17 87-103 18-34 (75)
430 PF02184 HAT: HAT (Half-A-TPR) 71.6 12 0.00025 20.0 3.6 28 90-118 2-29 (32)
431 PRK15490 Vi polysaccharide bio 71.5 29 0.00063 32.6 8.6 67 3-74 38-104 (578)
432 cd02677 MIT_SNX15 MIT: domain 69.9 7.2 0.00016 25.6 3.3 15 89-103 20-34 (75)
433 COG3014 Uncharacterized protei 69.9 76 0.0016 27.7 10.9 79 26-104 40-154 (449)
434 PF13041 PPR_2: PPR repeat fam 69.7 15 0.00032 21.5 4.5 31 40-70 2-32 (50)
435 KOG2758 Translation initiation 69.7 28 0.0006 30.0 7.3 77 27-103 115-195 (432)
436 cd02677 MIT_SNX15 MIT: domain 68.3 12 0.00027 24.5 4.1 15 55-69 20-34 (75)
437 KOG4014 Uncharacterized conser 68.1 36 0.00078 26.8 7.1 111 5-120 32-155 (248)
438 PF01239 PPTA: Protein prenylt 67.7 16 0.00034 19.0 4.2 18 64-81 6-23 (31)
439 smart00671 SEL1 Sel1-like repe 67.3 15 0.00033 19.3 3.9 28 8-35 2-33 (36)
440 cd02679 MIT_spastin MIT: domai 66.4 16 0.00035 24.3 4.3 33 22-69 4-36 (79)
441 PF02064 MAS20: MAS20 protein 66.0 13 0.00029 26.9 4.3 29 11-39 67-95 (121)
442 TIGR00756 PPR pentatricopeptid 65.8 17 0.00036 18.7 3.9 21 47-67 6-26 (35)
443 KOG3807 Predicted membrane pro 65.8 91 0.002 27.1 13.3 40 78-117 187-226 (556)
444 PF08238 Sel1: Sel1 repeat; I 65.4 20 0.00043 19.3 4.2 13 23-35 24-36 (39)
445 PRK11619 lytic murein transgly 65.1 1E+02 0.0022 29.8 11.1 57 47-103 318-374 (644)
446 KOG1497 COP9 signalosome, subu 64.9 93 0.002 26.9 11.2 93 9-102 105-211 (399)
447 PF02064 MAS20: MAS20 protein 64.5 18 0.0004 26.2 4.7 35 78-112 66-100 (121)
448 KOG4279 Serine/threonine prote 64.0 46 0.00099 32.3 8.2 113 9-123 203-334 (1226)
449 COG5107 RNA14 Pre-mRNA 3'-end 63.3 1.2E+02 0.0026 27.7 13.4 118 3-121 38-164 (660)
450 KOG1463 26S proteasome regulat 63.1 1E+02 0.0023 26.9 10.7 93 12-104 133-238 (411)
451 KOG2581 26S proteasome regulat 62.9 1.2E+02 0.0025 27.3 11.2 68 7-74 209-280 (493)
452 PF15469 Sec5: Exocyst complex 61.8 69 0.0015 25.0 8.1 27 89-115 153-179 (182)
453 KOG1538 Uncharacterized conser 59.9 76 0.0016 30.3 8.7 22 11-32 636-657 (1081)
454 KOG4563 Cell cycle-regulated h 59.3 30 0.00065 30.3 5.8 60 5-64 39-106 (400)
455 PF12753 Nro1: Nuclear pore co 59.2 18 0.00039 32.0 4.6 46 57-104 334-391 (404)
456 COG4941 Predicted RNA polymera 59.1 66 0.0014 28.0 7.7 72 12-83 334-407 (415)
457 COG1747 Uncharacterized N-term 58.5 1.6E+02 0.0034 27.5 15.8 86 16-104 75-160 (711)
458 PF09797 NatB_MDM20: N-acetylt 58.4 29 0.00062 30.7 6.0 43 57-99 199-241 (365)
459 KOG0292 Vesicle coat complex C 58.1 2E+02 0.0042 28.9 11.3 108 7-114 991-1123(1202)
460 PF00244 14-3-3: 14-3-3 protei 58.0 1.1E+02 0.0023 25.3 13.7 59 44-102 4-64 (236)
461 KOG1463 26S proteasome regulat 57.9 1.3E+02 0.0028 26.3 13.7 173 9-181 6-241 (411)
462 PF05053 Menin: Menin; InterP 57.8 1.7E+02 0.0036 27.6 10.9 78 12-104 262-347 (618)
463 PF13812 PPR_3: Pentatricopept 57.5 26 0.00055 18.0 4.2 26 78-103 4-29 (34)
464 COG4259 Uncharacterized protei 56.6 36 0.00079 23.7 4.7 39 74-112 71-109 (121)
465 KOG2997 F-box protein FBX9 [Ge 55.9 28 0.00061 29.8 5.0 41 5-45 17-57 (366)
466 COG5536 BET4 Protein prenyltra 55.8 54 0.0012 27.7 6.5 89 27-115 94-190 (328)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 55.6 68 0.0015 23.4 6.6 44 59-102 81-126 (126)
468 PF13226 DUF4034: Domain of un 55.1 91 0.002 26.4 8.0 68 26-93 62-151 (277)
469 COG3014 Uncharacterized protei 54.9 1.5E+02 0.0032 26.0 9.9 114 11-125 62-243 (449)
470 cd02683 MIT_1 MIT: domain cont 54.4 60 0.0013 21.4 7.8 15 94-108 32-46 (77)
471 COG5159 RPN6 26S proteasome re 54.3 1.4E+02 0.003 25.5 14.0 94 12-105 130-236 (421)
472 KOG2758 Translation initiation 53.2 69 0.0015 27.7 6.8 109 14-131 76-189 (432)
473 KOG4563 Cell cycle-regulated h 52.2 33 0.00071 30.1 4.9 57 42-98 42-106 (400)
474 KOG0276 Vesicle coat complex C 52.2 1.2E+02 0.0027 28.7 8.7 71 16-91 646-724 (794)
475 PF12753 Nro1: Nuclear pore co 50.2 32 0.0007 30.5 4.7 34 89-124 332-365 (404)
476 KOG0686 COP9 signalosome, subu 50.2 1.9E+02 0.0042 26.0 10.0 102 76-182 151-255 (466)
477 COG4649 Uncharacterized protei 50.2 1.2E+02 0.0027 23.8 14.4 50 54-103 71-122 (221)
478 PF04348 LppC: LppC putative l 49.7 5.5 0.00012 37.3 0.0 101 4-104 21-127 (536)
479 smart00745 MIT Microtubule Int 49.0 72 0.0016 20.7 6.7 15 88-102 21-35 (77)
480 KOG4056 Translocase of outer m 48.7 54 0.0012 24.3 4.9 29 12-40 86-114 (143)
481 PF08626 TRAPPC9-Trs120: Trans 48.6 3E+02 0.0066 29.0 12.1 31 6-36 241-271 (1185)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 48.0 1.1E+02 0.0023 22.4 9.9 41 93-133 81-123 (126)
483 cd02656 MIT MIT: domain contai 47.8 75 0.0016 20.5 5.8 15 89-103 20-34 (75)
484 PF00244 14-3-3: 14-3-3 protei 46.2 1.7E+02 0.0036 24.1 18.2 43 9-51 3-46 (236)
485 cd00280 TRFH Telomeric Repeat 46.2 64 0.0014 25.5 5.2 52 47-99 117-168 (200)
486 COG5536 BET4 Protein prenyltra 46.0 1.9E+02 0.0041 24.6 8.7 58 57-114 90-149 (328)
487 smart00777 Mad3_BUB1_I Mad3/BU 45.6 86 0.0019 22.9 5.7 23 109-131 99-121 (125)
488 cd00215 PTS_IIA_lac PTS_IIA, P 44.6 52 0.0011 22.8 4.2 29 5-33 13-41 (97)
489 COG4259 Uncharacterized protei 44.2 64 0.0014 22.5 4.4 37 41-77 72-108 (121)
490 PF02255 PTS_IIA: PTS system, 43.1 59 0.0013 22.5 4.3 30 4-33 11-40 (96)
491 TIGR00823 EIIA-LAC phosphotran 42.9 57 0.0012 22.7 4.2 29 5-33 15-43 (99)
492 PF12583 TPPII_N: Tripeptidyl 42.8 1.1E+02 0.0023 22.6 5.6 29 90-118 91-119 (139)
493 PF09670 Cas_Cas02710: CRISPR- 42.5 2.5E+02 0.0054 25.1 13.9 62 43-104 133-198 (379)
494 TIGR00985 3a0801s04tom mitocho 42.0 68 0.0015 24.3 4.7 35 78-112 93-128 (148)
495 KOG0739 AAA+-type ATPase [Post 42.0 1.9E+02 0.0042 25.0 7.7 59 23-104 7-71 (439)
496 TIGR00985 3a0801s04tom mitocho 41.9 48 0.001 25.0 4.0 30 47-76 96-126 (148)
497 KOG2114 Vacuolar assembly/sort 41.8 3.7E+02 0.008 26.8 13.6 32 7-38 368-400 (933)
498 PF12583 TPPII_N: Tripeptidyl 41.3 1.4E+02 0.0031 22.0 6.2 39 49-87 84-122 (139)
499 PF15297 CKAP2_C: Cytoskeleton 41.3 99 0.0022 27.1 6.2 51 57-107 119-172 (353)
500 KOG4056 Translocase of outer m 40.5 85 0.0018 23.3 4.8 35 79-113 85-119 (143)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-34 Score=245.78 Aligned_cols=280 Identities=13% Similarity=0.122 Sum_probs=246.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+.|.-+.+|.++|.++..+|+...||..|++|+.++|+...+|+++|.+|...+.++.|+.+|.+|+.+.|+++.++-++
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 46777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.+|..+|..+-||.+|++||++.|+.++++.+++..+...|+..+|...+. .+..+.+..+....++|+++..
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn------kaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN------KALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH------HHHHhCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977752 2233334455566677888887
Q ss_pred hhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914 162 KHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFS 235 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~ 235 (320)
.|.++.|...|.+|++.++.-..-..+ +|..+|++++|+..|+.++.|+|.+..... +|..|..+|+. |+.+|+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 787888888887777777665444443 999999999999999999999999866655 99999999998 999999
Q ss_pred HHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccccccccccccc
Q 020914 236 SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGK 292 (320)
Q Consensus 236 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (320)
+||.. +|.++++..|+|+.+...|...+++..+++++..++.|..+..+...
T Consensus 447 rAI~~-----nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 447 RAIQI-----NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHhc-----CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 99999 99999999999999999999999999999999888887766666543
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=2.1e-31 Score=231.38 Aligned_cols=280 Identities=13% Similarity=0.099 Sum_probs=178.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|+.+++|.++|.++..+|+.+.|.++|..||+++|....+...+|..+...|+..+|..+|.+|+..+|..+-+|.++|.
T Consensus 147 p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~ 226 (966)
T KOG4626|consen 147 PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGC 226 (966)
T ss_pred chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcch
Confidence 55566666666666666666666666666666666555555555555555555555555555555555555555555555
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN------------------------------ 133 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~------------------------------ 133 (320)
++...|+...|+..|++|++++|...+++++||.++...+.+++|...+.
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 55555555555555555555555555555555555555555555543322
Q ss_pred --HhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc---ccChhHHhhhcChhHHHHhhhhhhc
Q 020914 134 --IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDAKVYFLLDKEKTDTEKYAPIVN 208 (320)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~~~~~~lg~~~~A~~~~~~a~~ 208 (320)
++.+++.. +.-+..+.+++++....|...++...|.+|+...+.-. .-..++|..+|+.+.|...|.++++
T Consensus 307 ~~Ykral~~~----P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 307 DTYKRALELQ----PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHhcC----CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 12222222 22233344445555555555555555444443322211 0111199999999999999999999
Q ss_pred cccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccccccccccc
Q 020914 209 VDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIP 285 (320)
Q Consensus 209 ~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
+.|....... +|.+|...|.+ |+.+|+.|+.+ .|.+++++.|+|+++..+|+.+++...++.++..++-|..
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae 457 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE 457 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence 9999876665 89999999999 99999999999 9999999999999999999999999999998888887776
Q ss_pred ccccccc
Q 020914 286 SSNEKGK 292 (320)
Q Consensus 286 ~~~~~~~ 292 (320)
+..+.+.
T Consensus 458 AhsNLas 464 (966)
T KOG4626|consen 458 AHSNLAS 464 (966)
T ss_pred HHhhHHH
Confidence 6666543
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=3e-25 Score=207.99 Aligned_cols=264 Identities=19% Similarity=0.260 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
.+..+..+|+.++..|+|++|+..|+++|.+.|+ +..+.++|.||..+|++++|+..++++++++|++..+|+.+|.+|
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999996 789999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHH------------------------------HHHHHHHHH----------------
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAE------------------------------VSRKIKRVS---------------- 119 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~------------------------------~~~~l~~~~---------------- 119 (320)
..+|++++|+..|..++.+++.+.. .+..++..+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999999888766544332211 111111110
Q ss_pred --------------------HHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcch---------------------
Q 020914 120 --------------------QLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE--------------------- 158 (320)
Q Consensus 120 --------------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 158 (320)
...+.+++|++.+.. .++.. ...+.....+...|.+
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~--al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHH--HHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 011345555544321 11100 0001111111122222
Q ss_pred ------hhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhh
Q 020914 159 ------ECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGS 221 (320)
Q Consensus 159 ------~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~ 221 (320)
+...+......+.+++|+..+.+++.++|. ++..+|++++|+..|+++++++|.....+. +|.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 222333333344444455555555555443 677778888888888888888887655444 777
Q ss_pred HHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 222 CFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 222 ~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
++..+|++ |+..|++++.. .|..+.+|..+|.++..+|+++++...++.+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN-----FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 78888888 88888888877 666678888888888888888888777666443
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=8.3e-25 Score=204.98 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=145.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|..+.++..+|.+++..|++++|+..|+++++++|.++.+|..+|.++..+|++++|+..|+++++++|+++.+|+.+|.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
++..+|++++|+.+|+++++++|++..++..+|.++...|++++|+.... ..+. ..+..+.++..+|.++...|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~--~al~----~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR--RCKK----NFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHH----hCCCChHHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777777777777777755532 1111 11223334444555555555
Q ss_pred HHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914 164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A 230 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A 230 (320)
.+..|+..+++|+...++....... .+...|++++|+..+++++.++|.....+. +|.++...|++ |
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 5555555555555443321111111 122246666666666666666665543333 56666666666 6
Q ss_pred HHHHHHHhch
Q 020914 231 DDSFSSAACL 240 (320)
Q Consensus 231 ~~~~~~al~~ 240 (320)
+..|++|+++
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 5
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.9e-23 Score=194.57 Aligned_cols=263 Identities=11% Similarity=-0.017 Sum_probs=173.5
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
..|.++.+++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+
T Consensus 71 ~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~l 150 (656)
T PRK15174 71 TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALH 150 (656)
T ss_pred hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.++..+|++++|+..+++++...|+++.++..++. +...|++++|+..... .+...+... .......+..+..
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~--~l~~~~~~~---~~~~~~l~~~l~~ 224 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARA--LLPFFALER---QESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHH--HHhcCCCcc---hhHHHHHHHHHHH
Confidence 999999999999999999999999999888876644 6677888888766431 111100000 0000111222233
Q ss_pred hhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhH----HHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HH
Q 020914 162 KHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKT----DTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--AD 231 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~----A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~ 231 (320)
.|.+..+...+++++...+......- .++...|++++ |+..+++++.++|.....+. +|.++...+++ |+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 33333333333333322111100000 04455555553 56666666666665433332 55555555555 66
Q ss_pred HHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 232 DSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 232 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
..+++++.+ .|..+.++.++|.++..+|+++++...++.
T Consensus 305 ~~l~~al~l-----~P~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 305 PLLQQSLAT-----HPDLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666655 445555566666666666666655544433
No 6
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.1e-22 Score=172.91 Aligned_cols=230 Identities=18% Similarity=0.183 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
+.++...|..++-.|++..|...|+++|+++|.+...|..+|.+|...++.++-..+|++|..+||+++++|+.+|++++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
-+++|++|+..|++++.++|++..++..++-+..+.++++++....+ ....--+..++++..++.+...++.++
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fe------e~kkkFP~~~Evy~~fAeiLtDqqqFd 479 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFE------EAKKKFPNCPEVYNLFAEILTDQQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhCCCCchHHHHHHHHHhhHHhHH
Confidence 99999999999999999999999999999999999998888865532 222222445677888889999999999
Q ss_pred HHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHH
Q 020914 167 FVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDS 233 (320)
Q Consensus 167 ~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~ 233 (320)
.|.+.|+.|++.-++...+.-+ .+.-.+++.+|++.+++|++++|....... +|.+....++. |++.
T Consensus 480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999998776652221111 444558999999999999999998766654 88888888888 9999
Q ss_pred HHHHhchhC
Q 020914 234 FSSAACLVA 242 (320)
Q Consensus 234 ~~~al~~~~ 242 (320)
|++++.+..
T Consensus 560 FEksa~lAr 568 (606)
T KOG0547|consen 560 FEKSAQLAR 568 (606)
T ss_pred HHHHHHHHH
Confidence 999997743
No 7
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.3e-22 Score=171.09 Aligned_cols=261 Identities=21% Similarity=0.258 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..+.++..+|+-++..|+|++||++|.+||++.|+.+..|.+++-||..+|+|++.++...++|+++|+++.++++++.+
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999888876555555
Q ss_pred HHHccCHHHH----------------------------------------------------------------------
Q 020914 85 LEAMEQYDDA---------------------------------------------------------------------- 94 (320)
Q Consensus 85 ~~~~~~~~~A---------------------------------------------------------------------- 94 (320)
+..+|++++|
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 5555544444
Q ss_pred --------------------------------------------------------------------------------
Q 020914 95 -------------------------------------------------------------------------------- 94 (320)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (320)
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence
Q ss_pred ---------------------------HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914 95 ---------------------------LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 147 (320)
Q Consensus 95 ---------------------------~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 147 (320)
...|.+|.+++|+++++|+..|+++..++++++|++-+ +.+..+.+.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF------~Kai~L~pe 426 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF------QKAISLDPE 426 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH------HHHhhcChh
Confidence 44777777778888888888888888888888885442 233333333
Q ss_pred HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCcc-----ch
Q 020914 148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPH-----TH 219 (320)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~-----~~ 219 (320)
..-.+..++-+.+..+.+..++..|++++..|+.+.....- ++..++++++|++.|+.++++.|...... ..
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 33344445555666777888888888888888876655443 88889999999999999999998842111 12
Q ss_pred hhH--HHH-hhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914 220 GSC--FQF-LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 220 g~~--~~~-~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
|.. ..+ -+.+ |+...++|+++ +|.-..++.++|......|+.+++++-|+++
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~-----Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIEL-----DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHcc-----CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 222 2445 99999999999 8888999999999999999999998888763
No 8
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.7e-23 Score=184.13 Aligned_cols=207 Identities=18% Similarity=0.199 Sum_probs=173.8
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+.|..+++|..+|+++--+++++.|+++|++|++++|.++-+|..+|.=+.....+++|..+|+.||..+|.+..+||.+
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.+|.++++++.|.-+|++|+.++|.+......+|.++...|+.++|+.+.+..-. +++..+ .
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~------ld~kn~---------l-- 558 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH------LDPKNP---------L-- 558 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh------cCCCCc---------h--
Confidence 99999999999999999999999999999999999999999988888665321100 000000 0
Q ss_pred hhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914 162 KHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAA 238 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al 238 (320)
.. |.++ .+++.++++++|+..++.+.++.|.....+. +|.+|..+|+. |+..|.=|.
T Consensus 559 --------~~-------~~~~-----~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 559 --------CK-------YHRA-----SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred --------hH-------HHHH-----HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 00 1111 1778889999999999999988888765555 88888888887 999999998
Q ss_pred chhCCCC
Q 020914 239 CLVAPKS 245 (320)
Q Consensus 239 ~~~~~~~ 245 (320)
.++|+..
T Consensus 619 ~ldpkg~ 625 (638)
T KOG1126|consen 619 DLDPKGA 625 (638)
T ss_pred cCCCccc
Confidence 8855544
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.7e-22 Score=186.47 Aligned_cols=264 Identities=11% Similarity=0.006 Sum_probs=206.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..+++++..+|+++.++...+
T Consensus 106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
.+...|++++|+..++++++.+|.. ......++.++...|++++|+.... ..+.. .+....+...+|..+..
T Consensus 186 -~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~--~al~~----~p~~~~~~~~Lg~~l~~ 258 (656)
T PRK15174 186 -SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE--SALAR----GLDGAALRRSLGLAYYQ 258 (656)
T ss_pred -HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH--HHHhc----CCCCHHHHHHHHHHHHH
Confidence 4788999999999999999987643 4445556778888899999976643 22222 22334455556777666
Q ss_pred hhHHHH----HHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HH
Q 020914 162 KHVFSF----VVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--AD 231 (320)
Q Consensus 162 ~~~~~~----a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~ 231 (320)
.|.+.. +...+++++...+....... .++...|++++|+..+++++.++|.....+. +|.++...|++ |+
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 666554 44444444443332111111 1788889999999999999999988754444 78889899999 99
Q ss_pred HHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 232 DSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 232 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
..|++++.. +|..+.++...|.++..+|+.+++...++....
T Consensus 339 ~~l~~al~~-----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 339 DEFVQLARE-----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHh-----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999987 666666676778888999999988877766433
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.9e-22 Score=176.43 Aligned_cols=216 Identities=18% Similarity=0.245 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------------------------CCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----------------------------------DPSNPTLFSNRAAAFL 52 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------------------------~p~~~~~~~~lg~~~~ 52 (320)
.-.+.++|..|+..++|++|..+|+.+-.. +|+.|+.|+.+|.||-
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 356789999999999999999999998555 4556777888888888
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 53 HLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 53 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.+++++.|+.+|++|+++||++.-+|..+|.=+..+.+|+.|..+|++||.++|.+..+|+.+|.++..+++++.|+
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae--- 509 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAE--- 509 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHH---
Confidence 88888888888888888888777777777777777777888888888888888888888888877777777766662
Q ss_pred HHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHh
Q 020914 133 NIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEK 202 (320)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~ 202 (320)
-.|.+++.++|. ++..+|+.++|+..
T Consensus 510 --------------------------------------------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 510 --------------------------------------------FHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred --------------------------------------------HHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 234455556665 77889999999999
Q ss_pred hhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914 203 YAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE 274 (320)
Q Consensus 203 ~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 274 (320)
|++|+.++|.....-. .+.++..+++| |+..+|..-++ .|+-..++.-+|.++.++|+.+.++..|.
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-----vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL-----VPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 9999999998865554 89999999999 99999999988 66667888899999999999988875554
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=4.2e-21 Score=191.13 Aligned_cols=53 Identities=9% Similarity=-0.068 Sum_probs=42.8
Q ss_pred hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914 219 HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 219 ~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
+|.++...+++ |++.|++++.. +|.+++++++++.++...|+++++...++..
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTR-----EPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555566677 99999999988 7777899999999999999999988777653
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=8e-21 Score=185.59 Aligned_cols=271 Identities=15% Similarity=0.146 Sum_probs=156.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.+...+..+|..+...|++++|+..+++++...|.++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhHHHHHH------------
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM-VQHLDEFKS------------ 149 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~------------ 149 (320)
.++...|++++|+..|+++++.+|++..++..++.++...|++++|..+......... .........
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777777777777666666666666666666666554321110000 000000000
Q ss_pred --------------HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccC
Q 020914 150 --------------EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKA 212 (320)
Q Consensus 150 --------------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~ 212 (320)
.....++..+...|....+...+++++...+......- .++...|+.++|+..|+++++..|.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 11112222233333333333333333322211110000 0566677777777777777777665
Q ss_pred cCCccc-hhhHHHHhhHH-HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 213 FESPHT-HGSCFQFLRQY-ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 213 ~~~~~~-~g~~~~~~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
...... +|.++...++- |+..+++++.+ .|..+..|..+|.++..+|+++++...+++...
T Consensus 803 ~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKDPRALEYAEKALKL-----APNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 533322 45555555555 77777777766 444566666777777777777766666655433
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=5.4e-21 Score=186.81 Aligned_cols=265 Identities=13% Similarity=0.075 Sum_probs=201.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.+...+..+|.++...|++++|+..+++++..+|.+...+..++.+|...|++++|+..+++++...|+++.+|..+|
T Consensus 529 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH-----------------
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD----------------- 145 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------- 145 (320)
.++...|++++|+..|+++++.+|+++.++..++.++...|++++|...... .+...+...
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999877532 111111100
Q ss_pred -------------HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC--hhHHhhhcChhHHHHhhhhhhccc
Q 020914 146 -------------EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD--AKVYFLLDKEKTDTEKYAPIVNVD 210 (320)
Q Consensus 146 -------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~lg~~~~A~~~~~~a~~~~ 210 (320)
+.........|.++...|.+..+...+.+++...+...... ..++...|++++|++.++++++..
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 00112222233333334444444444444433322210000 016777888888888888888887
Q ss_pred cCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 211 KAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 211 ~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
|....... .|.++...|++ |+..|+++++. .|.++.++.++|.++...|+ .+++..+++
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-----APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 77654443 77777778887 88888888877 66667888888888888888 666655554
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=1.4e-20 Score=187.54 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=44.9
Q ss_pred HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccC
Q 020914 189 VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHS 264 (320)
Q Consensus 189 ~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~ 264 (320)
++...|++++|++.++++++..|....... +|.++...+++ |+..|++++...++.. ....+.++...|..+...|
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 455556666666666655555554433322 45555555555 6666666654422211 1112234444555555556
Q ss_pred cccchhhhccccc
Q 020914 265 QQDGFFVQFESPL 277 (320)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (320)
+.+.+...+..+.
T Consensus 726 ~~~~A~~~y~~Al 738 (1157)
T PRK11447 726 QPQQALETYKDAM 738 (1157)
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555443
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=1.7e-20 Score=159.89 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+..+..++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|++..+|.++|.
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++...|++++|++.|+++++++|+++.....+ .+....++.++|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENL 188 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHH
Confidence 99999999999999999999999987422211 2233445667775543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=1.1e-19 Score=161.80 Aligned_cols=262 Identities=11% Similarity=-0.001 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG 82 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg 82 (320)
....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999854332 35788999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH-HHHHHHhhhhcchhhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD-EFKSEMSEKYGAEECW 161 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 161 (320)
.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.... .+...+... .........++..+..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAER--LEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHH--HHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999877432 111111100 0112223344555555
Q ss_pred hhHHHHHHHHHHHHHHhHhhcccc---ChhHHhhhcChhHHHHhhhhhhccccCcCC--ccchhhHHHHhhHH--HHHHH
Q 020914 162 KHVFSFVVETMETAVKSWHETSKV---DAKVYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--ADDSF 234 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~---~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~--~~~~g~~~~~~~~~--A~~~~ 234 (320)
.+....+...++++++..+..... ...++...|++++|++.++++++.+|.... ...++.++...+++ |+..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 566666666666665543321111 111677778888888888888877765421 12256677777777 88888
Q ss_pred HHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914 235 SSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 235 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
++++.. .|+... +..++..+...|+++++...++..
T Consensus 273 ~~~~~~-----~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 273 RRALEE-----YPGADL-LLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHh-----CCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888876 333332 366777788888888777666553
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=3.7e-19 Score=158.36 Aligned_cols=262 Identities=10% Similarity=-0.020 Sum_probs=200.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
.|+++..+..+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|+++++.+|.+..++
T Consensus 65 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 144 (389)
T PRK11788 65 DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGAL 144 (389)
T ss_pred CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHH
Confidence 57788999999999999999999999999999854332 36789999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAE-----VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
..++.++...|++++|++.++++++..|.+.. .+..+|.++...|++++|+.... ..+... +.......
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~al~~~----p~~~~~~~ 218 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK--KALAAD----PQCVRASI 218 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH--HHHhHC----cCCHHHHH
Confidence 99999999999999999999999999887633 45678888888999999977643 222221 22234455
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHhHhhcc----ccChhHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH
Q 020914 154 KYGAEECWKHVFSFVVETMETAVKSWHETS----KVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY 229 (320)
Q Consensus 154 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~----~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~ 229 (320)
.++..+...|.+..|...++++....+... .....+|...|+.++|+..+++++++.|+.......+.++...+++
T Consensus 219 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 219 LLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence 567777777777777777777765432211 1111278889999999999999999988765444478888888888
Q ss_pred --HHHHHHHHhchhCCCCCCChhHhh--hcccccccccCcccchhhhccc
Q 020914 230 --ADDSFSSAACLVAPKSIISYPQVW--RGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 230 --A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
|+..|+++++. .|+..... ++........|+..+++..++.
T Consensus 299 ~~A~~~l~~~l~~-----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 299 EAAQALLREQLRR-----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHh-----CcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999988 55555443 3222212224466666655544
No 18
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=3.6e-19 Score=145.76 Aligned_cols=107 Identities=25% Similarity=0.404 Sum_probs=104.4
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.+|.++...+.+|..++..|++..|+..|..|++.+|++-.+++.+|.+|..+|+..-|+..+.++|++.|+...+..++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
|.+++++|++++|...|.++|.-+|++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999965
No 19
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=145.90 Aligned_cols=122 Identities=34% Similarity=0.578 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..++.+...|+-++..++|++|+..|.+||+++|.++..|+++|.+|.++|.++.|+++++.||.+||.+.++|..+|.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 126 (320)
|..+|++++|++.|+++|+++|++...+..|..+...++...
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999988887766555444
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=2e-19 Score=158.06 Aligned_cols=286 Identities=15% Similarity=0.088 Sum_probs=215.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.+.+.|+..-.+.+...+++.|...|.++-...| ...+|+.-+.....+++.++|+..++++|+..|++...|..+|
T Consensus 614 ~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 614 NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 466677777777778888888888888888877666 4689999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (320)
+++.++++.+.|.+.|...++..|+.+..|..++.+.+..|...+|..++ +...--.+....++...-......
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il------drarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL------DRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH------HHHHhcCCCcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999986554 333222233333333344445555
Q ss_pred hHHHHHHHHHHHHHHhHhhccccChhHHhhhcC---hhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHH
Q 020914 163 HVFSFVVETMETAVKSWHETSKVDAKVYFLLDK---EKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSA 237 (320)
Q Consensus 163 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~---~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~a 237 (320)
|....+.....+|++.++....+.....+..++ ..++++.+.+.- .+| ......+..|..-.++ |.++|++|
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dp--hVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDP--HVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc-CCc--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777666664333333 333333333321 122 2222367778888888 99999999
Q ss_pred hchhCCCCCCChhHhhhcccccccccCcc---cchhhhccc--cccccccccccccccccccccCccccccc
Q 020914 238 ACLVAPKSIISYPQVWRGQGLRKWRHSQQ---DGFFVQFES--PLLRKLWFIPSSNEKGKTLCRDPEVLDIS 304 (320)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (320)
++. +|+++++|.+.-.....+|.- ++.+..+++ |..+..| ...+++..+..|.+++||...
T Consensus 844 vk~-----d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W-~avSK~i~n~~~t~~eiL~~~ 909 (913)
T KOG0495|consen 844 VKK-----DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW-QAVSKDIKNWRKTPEEILLLV 909 (913)
T ss_pred Hcc-----CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH-HHHhhhHHhccCCHHHHHHHH
Confidence 999 899999999888777777743 333444433 7888888 788999999999998887553
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=2.4e-18 Score=164.68 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=200.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|..+.++..+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|+++. +..+|
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la 123 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA 123 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H--HHHhHHHHHHHHhhhhcchh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV-D--MVQHLDEFKSEMSEKYGAEE 159 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~ 159 (320)
.++...|++++|+..|+++++++|++..++..++.++...+..+.|+......... + ......+....+...+....
T Consensus 124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999998888888887664321110 0 00000111111111111111
Q ss_pred hhhhH---HHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCC--ccchhhHHH
Q 020914 160 CWKHV---FSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQ 224 (320)
Q Consensus 160 ~~~~~---~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~--~~~~g~~~~ 224 (320)
...+. ...|+..++..+..++......+. ++...|++++|+..|++++...+.... ....|.++.
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl 283 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYL 283 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 11122 255666777666655444333332 356778999999999999988643211 112688888
Q ss_pred HhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 225 FLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 225 ~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
..+++ |+..|++++...|.. .+.....+..++..+...++++++..-++.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~-~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETI-ADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCC-CCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 89998 999999998763222 111234566666777888999988766554
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-18 Score=150.53 Aligned_cols=266 Identities=21% Similarity=0.351 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
.-....|+..+..|+|+.|+.+|..||.++|.+...|.++..+|..+|+|++|++.-.+.++++|+.+.+|..+|..+..
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH------------------------------------------
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDK------------------------------------------ 125 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~------------------------------------------ 125 (320)
+|+|++|+..|.+.|+.+|++......+..++......
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988877777665221000
Q ss_pred ---------HHHHHHHH---------------------------------------------------------------
Q 020914 126 ---------KRAQEVEN--------------------------------------------------------------- 133 (320)
Q Consensus 126 ---------~~A~~~~~--------------------------------------------------------------- 133 (320)
-.+.-...
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00000000
Q ss_pred ----HhhhhHHHHhH------------------------------------HHHHHHHhhhhcchhhhhhHHHHHHHHHH
Q 020914 134 ----IRSNVDMVQHL------------------------------------DEFKSEMSEKYGAEECWKHVFSFVVETME 173 (320)
Q Consensus 134 ----~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 173 (320)
+..++.....+ ...........|..+...+.+..++..+.
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 00000000000 00011112223444444555555555565
Q ss_pred HHHHhHhh-------------------ccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHH
Q 020914 174 TAVKSWHE-------------------TSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCF 223 (320)
Q Consensus 174 ~a~~~~~~-------------------~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~ 223 (320)
+++..+++ ...++|. .++..|++..|+..|.+++..+|++...+- ++.||
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 55544443 1111221 788899999999999999999999876665 89999
Q ss_pred HHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 224 QFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 224 ~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
..++.+ |+++-++++++ +|.+..+|.-.|.++..+.+|+.++..+.+.+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL-----~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL-----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 99999999999 999999999999999999999999888776444
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=1.2e-17 Score=151.93 Aligned_cols=264 Identities=17% Similarity=0.126 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
...+.++..|+.++..|++++|+..+.++|.++|.++.+|+.+|.+|..+|+.++|..+.-.|-.++|++.+.|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH------hHH--HH---------
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ------HLD--EF--------- 147 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~--~~--------- 147 (320)
..++|.+.+|+-+|.+|++.+|.+.......+.++...|+...|...... .+...+ ... ..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~--l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ--LLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH--HHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998765321 111110 000 00
Q ss_pred -----HHHHhhhh---------------cchhhhhhHHHHHHHHHHHHHH----------------------hHhhcccc
Q 020914 148 -----KSEMSEKY---------------GAEECWKHVFSFVVETMETAVK----------------------SWHETSKV 185 (320)
Q Consensus 148 -----~~~~~~~~---------------~~~~~~~~~~~~a~~~~~~a~~----------------------~~~~~~~~ 185 (320)
...+...+ ..++.....++.+...+-.-.. .++....+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 00000000 0001111111111111111111 00000000
Q ss_pred C----------------------------------hh-----------HHhhhcChhHHHHhhhhhhccccCcC-Cccc-
Q 020914 186 D----------------------------------AK-----------VYFLLDKEKTDTEKYAPIVNVDKAFE-SPHT- 218 (320)
Q Consensus 186 ~----------------------------------~~-----------~~~~lg~~~~A~~~~~~a~~~~~~~~-~~~~- 218 (320)
. +. ++...|++.+|+..+..++...+... ..|.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 0 00 77888999999999999988755442 2344
Q ss_pred hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 219 HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 219 ~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
+|.||..++.| |+++|++++.+ .|+..++-..++..+..+|+.+++.+-++.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~-----~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLIL-----APDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc-----CCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 99999999999 99999999998 888889999999999999999998877765
No 24
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.82 E-value=1.5e-18 Score=131.67 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
..++.+|.++...|++++|+.+|++++.++|.+..+|..+|.++..+|++++|+..|++++.++|+++.+++++|.++..
T Consensus 25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
+|++++|+..|++++++.|+++..+..++.+....
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999888876543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=3.1e-18 Score=164.91 Aligned_cols=219 Identities=12% Similarity=-0.026 Sum_probs=95.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
|..+...|++++|+..|++++...|. ...+..+|.++...|++++|+.+|+++++++|++...+..++.....+|++++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 33334444444444444444333332 22334444444444555555555555555444444444444444444455555
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHH
Q 020914 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME 173 (320)
Q Consensus 94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 173 (320)
|+..|+++++++|+ ..++..+|.++...|++++|+..+ . ....+.+....+...+|.++...|....++..++
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l--~----~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDL--R----AALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHH--H----HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555555553 445555555555555555553332 1 1111122222333334444444444444444433
Q ss_pred HHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCcc-chhhHHHHhhHH--HHHHHHHHhch
Q 020914 174 TAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 174 ~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~-~~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
+|++..+....+... ++..+|++++|+..++++++++|...... ..|.+......+ |.+.+.++...
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 333332222111111 44555555555555555555555442222 244444444444 55555555544
No 26
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.8e-19 Score=156.62 Aligned_cols=226 Identities=14% Similarity=0.138 Sum_probs=170.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 89 (320)
-+..|..+++.|+..+|+-.|+.|+..+|+++++|..||.+....++-..||..+++|++++|++-.++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV 169 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 169 (320)
.-.+|..++.+-+...|........ .. .+.+..- .-......+....
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a--~~---~~~~~~~----------------------------~s~~~~~~l~~i~ 414 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSA--GE---NEDFENT----------------------------KSFLDSSHLAHIQ 414 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhcccc--Cc---cccccCC----------------------------cCCCCHHHHHHHH
Confidence 9999999999998888754322110 00 0000000 0000000111122
Q ss_pred HHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhc
Q 020914 170 ETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAAC 239 (320)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~ 239 (320)
..|-+|... ....++|. +|...|++++|+.+|+.|+..+|.+...|. +|..+.--.+. |+..|.+|++
T Consensus 415 ~~fLeaa~~--~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 415 ELFLEAARQ--LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHh--CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 233333322 22245555 677778999999999999999999988887 88888887777 9999999999
Q ss_pred hhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 240 LVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
+ .|.|..+++|+|.++..+|-|+++..-+-+
T Consensus 493 L-----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 493 L-----QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred c-----CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9 999999999999999999999887654433
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.2e-18 Score=146.22 Aligned_cols=194 Identities=12% Similarity=0.108 Sum_probs=166.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ 90 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 90 (320)
.-.|+-|...++.+.|+.+|++|+++||....+|..+|.=|..+.+...|+++|++|++++|.+-.+|+.+|++|.-++.
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc
Confidence 34678888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHH
Q 020914 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE 170 (320)
Q Consensus 91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 170 (320)
..=|+-+|++|+++.|.+...|..+|.++..+++.++|+..+. .+.........++..+|+.+...+..++|..
T Consensus 414 h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------rai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 414 HFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------RAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH------HHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999977653 3333334445567778888888888888888
Q ss_pred HHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccc
Q 020914 171 TMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVD 210 (320)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~ 210 (320)
.|++.++.......+.+. -+...+++++|..+...++.-+
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 888888877666666664 4556677888877766666653
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.81 E-value=5.4e-19 Score=150.63 Aligned_cols=214 Identities=14% Similarity=0.032 Sum_probs=146.3
Q ss_pred cCCHHHHHHHHHHHHhc---CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914 20 AGNYLKAAALYTQAIKQ---DPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~---~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
.+..+.++..+.++|.. +|. .+..|+.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45678899999999964 333 37889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914 96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA 175 (320)
Q Consensus 96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 175 (320)
..|+++++++|++..++.++|.++...|++++|++... ..+...+.... . .++. ......+....++..+.++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~--~al~~~P~~~~-~-~~~~---~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL--AFYQDDPNDPY-R-ALWL---YLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHhCCCCHH-H-HHHH---HHHHccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977642 22222221110 0 0000 0111123344444444443
Q ss_pred HHhHhhccccChhHHhhhcChhHH--HHh----hhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914 176 VKSWHETSKVDAKVYFLLDKEKTD--TEK----YAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~lg~~~~A--~~~----~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
+............+...+|+...+ ++. ++...++.|.....+. +|.++...|++ |+.+|++|+..
T Consensus 192 ~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 192 YEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 322111110111144556665433 222 2222233443333333 77778888888 88888888877
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=1.3e-18 Score=160.81 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhcCCCC
Q 020914 7 EMSLKDKGNEFFKA---GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---------KLNKALADAETTISLNPQW 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~l~p~~ 74 (320)
+..++.+|...+.. +++++|+.+|++|++++|+++.+|..+|.++..++ ++++|+..++++++++|++
T Consensus 258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~ 337 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN 337 (553)
T ss_pred HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 33466677766544 45789999999999999999999999999987554 4899999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+.+|..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+...
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997764
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=9.8e-19 Score=168.36 Aligned_cols=255 Identities=9% Similarity=-0.091 Sum_probs=196.7
Q ss_pred hH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 4 EA--EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 4 p~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
|. ++.+++.+|.++.. +++.+|+..|.+++...|++. ....+|.++...|++++|+..|++++...|.+ ..++.+
T Consensus 472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~l 548 (987)
T PRK09782 472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAA 548 (987)
T ss_pred CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHH
Confidence 55 88999999999998 899999999999999999754 46677888889999999999999998876664 567899
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.++...|++++|+.+|+++++.+|++......++......|++++|+..+ ...+...+ . ...+..++.++..
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~--~~AL~l~P----~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL--TRSLNIAP----S-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH--HHHHHhCC----C-HHHHHHHHHHHHH
Confidence 999999999999999999999999999888877776666679999997764 33333222 1 3445556666666
Q ss_pred hhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914 162 KHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFS 235 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~ 235 (320)
.|....|...+++++...+........ ++...|++++|+..|++++++.|.....+. +|.++..+|++ |+..|+
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666665555544433322222 788889999999999999999998865555 99999999999 999999
Q ss_pred HHhchhCCCCCCChhHhhhcccccccccCcccchhhhc
Q 020914 236 SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQF 273 (320)
Q Consensus 236 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 273 (320)
+|+++ .|+.+.+....|........+.++...+
T Consensus 702 ~Al~l-----~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 702 LVIDD-----IDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHhc-----CCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999 5555666666666555555555554433
No 31
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.1e-18 Score=147.79 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=125.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|..+-.|+..|.-|+.-|++.+|..+|.|+..++|....+|...|.+|...|..++|+.+|.+|-++.|+.....+.+|
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.=|..++.++-|.+.|.+|+.+.|.++-+...+|.+....+.+.+|....
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998774
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.78 E-value=2.4e-17 Score=135.45 Aligned_cols=128 Identities=20% Similarity=0.228 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..+..+..+|..++..|++++|+..++++++.+|.+..++..+|.++..+|++++|+..++++++.+|++..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYN--PQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+...|++++|++.|++++... |.....+..+|.++...|++++|....
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999864 556778888999999999999987664
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.1e-17 Score=153.11 Aligned_cols=221 Identities=14% Similarity=0.142 Sum_probs=183.0
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
++|.++.+++.+|.+.+..|+|..|+.+|++++.++|.. +.....+|.|++++|..+.|+..|+++++++|.++.++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 579999999999999999999999999999999999986 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcc
Q 020914 81 KGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA 157 (320)
Q Consensus 81 lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (320)
||.+-.... .+..++..+.++...+|.+|.+...|+.-+...|++..+..+..- .+.. ........+..+.+|.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~--ai~~-t~~~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH--AIKN-TENKSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH--HHHh-hhhhHHHHHHHHHHHH
Confidence 998877654 577899999999999999999999999999999999999777431 1111 1233455566777888
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh
Q 020914 158 EECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL 226 (320)
Q Consensus 158 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~ 226 (320)
.+...|+++.|..+|.++...-+.. .+.|. ++...|+++.|..+|+++++..|+...... +|..|...
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS 389 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence 8888888888888888887766554 22232 888999999999999999988887643333 66665544
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=2.2e-17 Score=152.60 Aligned_cols=130 Identities=13% Similarity=0.057 Sum_probs=118.8
Q ss_pred chHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 3 AEAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.|+++.++..+|.++... +++++|+..+++|++++|+++.++..+|.++...|++++|+..|+++++++|+
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 370 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI 370 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 578888999999887643 44899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++.+++.+|.++...|++++|+..|+++++++|.++.++..++.++...|++++|+...
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999999999999999999999999999888777776677788899887663
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=7.7e-19 Score=149.13 Aligned_cols=249 Identities=11% Similarity=0.030 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIK-Q-DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
+.+|.+++..|++++|++.+.+.+. . .|+++..|..+|.+...++++++|+..|++++..+|.++..+..++.+ ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4779999999999999999977654 4 488999999999999999999999999999999999999999999988 799
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV 168 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 168 (320)
+++++|+..++++.+..+ ++..+..+..++...++++++..+...... ....+....++..++.++...|....|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999988764 566677777788888999888766432111 111123445566677777777777777
Q ss_pred HHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhC
Q 020914 169 VETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVA 242 (320)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~ 242 (320)
...+++|++..+....+... ++...|+.+++.+.+.......|.+...+. +|.++..+|++ |+.+|++++..
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-- 243 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-- 243 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc--
Confidence 77777777666654333222 666778999887788777776666555555 99999999999 99999999988
Q ss_pred CCCCCChhHhhhcccccccccCcccchh
Q 020914 243 PKSIISYPQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (320)
+|..+.++...|.++...|+.+.++
T Consensus 244 ---~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 244 ---NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp ---STT-HHHHHHHHHHHT---------
T ss_pred ---ccccccccccccccccccccccccc
Confidence 8888999999999999999999987
No 36
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.7e-17 Score=147.66 Aligned_cols=253 Identities=15% Similarity=0.181 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
..+++++.+|..+..+|+|++|..+|.+++..+|++ .-.++.+|.+|...|+++.|+.+|+++++..|++......+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 345556666666666666666666666666665555 4555666666666666666666666666666666666666666
Q ss_pred HHHHcc----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhHHHHHHHHhhhhcch
Q 020914 84 ILEAME----QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV-QHLDEFKSEMSEKYGAE 158 (320)
Q Consensus 84 ~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (320)
+|...+ .-+.|..+..++++..|.+..+|..++.++....-+.. +..+ ..+++.. ......-+++..+.|..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~--~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAY--GNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHH--HHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 665554 44555566666666666666666666655543222222 2221 1111111 01112345566666666
Q ss_pred hhhhhHHHHHHHHHHHHHHhHhhccccCh--------h-----HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHH
Q 020914 159 ECWKHVFSFVVETMETAVKSWHETSKVDA--------K-----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQ 224 (320)
Q Consensus 159 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--------~-----~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~ 224 (320)
+...|.+..|.+.++.|..........+. . +...++++..|.+.|..++...|.+...+. +| |..
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~-~ma 540 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG-CMA 540 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh-HHH
Confidence 77777777777777777665331111111 1 666677888888888888888888765554 44 333
Q ss_pred H--hhHH-HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcc
Q 020914 225 F--LRQY-ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQ 266 (320)
Q Consensus 225 ~--~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (320)
. ...+ |..++..++.. +...|.+|.-+|+++....+.
T Consensus 541 ~~k~~~~ea~~~lk~~l~~-----d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNI-----DSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HhccCcHHHHHHHHHHHhc-----ccCCcHHHHHHHHHHHhhhhh
Confidence 2 2224 88899998877 666678888888766555444
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.4e-16 Score=133.05 Aligned_cols=253 Identities=16% Similarity=0.170 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-----------------------------HHHHHcc
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRA-----------------------------AAFLHLV 55 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg-----------------------------~~~~~~g 55 (320)
.++..++..|.++-..|....|+..+..++...|-+-.+|..++ .++..+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999998887766665554 3444455
Q ss_pred CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 56 KLNKALADAETTISL-NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI 134 (320)
Q Consensus 56 ~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 134 (320)
+.++++..+++.+.. .|++...-...|.+.....++++|+..|+..++.+|-..+-....++++....+..+- .+..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL-s~LA- 319 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL-SYLA- 319 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH-HHHH-
Confidence 566777777777776 7777777778888888888888888888888888886555444444444333221111 1100
Q ss_pred hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhh
Q 020914 135 RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYA 204 (320)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~ 204 (320)
.....++..+++ .-+-.|++.-..+..++|+..|.++++++|+ =|..+.+...|++.|+
T Consensus 320 ----~~v~~idKyR~E-------TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 320 ----QNVSNIDKYRPE-------TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHhccCCcc-------ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 011111122222 2233455666788888899999999999998 4566678999999999
Q ss_pred hhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 205 PIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 205 ~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
+|++++|.+.-+|. +|+.|..++.. |+-.|++|+.+ .|+++..|..+|.||.++++.+++..++..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-----KPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999988888 99999999985 99999999999 888899999999999999999998877755
No 38
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=2.7e-16 Score=122.54 Aligned_cols=127 Identities=19% Similarity=0.188 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
-+.+...+|.-|+..|++..|...+++||+.+|++..+|..+|..|..+|+.+.|.+.|++|++++|++.+++.+.|.-+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 86 EAMEQYDDALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
..+|+|++|...|++|+.. .|....++.++|.|....|+++.|.+.+
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 9999999999999999984 4556789999999999999999997764
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.4e-17 Score=139.46 Aligned_cols=262 Identities=15% Similarity=0.138 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
.+.+.+..++..++..++|.+..+..+..++.+|-+..++-..-.|+..+|+..+=...-.+.+...|+.+-.|+..|.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45677888999999999999999999999999998877665544488999998888888888889999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (320)
|...|++.+|..+|.|+..++|....+|...|..+...+..++|+..+.....+- +....-...+|--+...+.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc------cCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999998999998876643211111 1111111112222333333
Q ss_pred HHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCc------CC--ccchhhHHHHhhHH--HH
Q 020914 165 FSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAF------ES--PHTHGSCFQFLRQY--AD 231 (320)
Q Consensus 165 ~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~------~~--~~~~g~~~~~~~~~--A~ 231 (320)
+..|...|.+|....+...-+... +.+..+.+.+|..+|+.++..-++. +. ...+|.++..+++| |+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 444444444443333221111111 5555667777777777777322111 11 11277777777777 78
Q ss_pred HHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914 232 DSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL 277 (320)
Q Consensus 232 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 277 (320)
..|++||.+ .|.++.++...|-++..+|..+.+..-|-+++
T Consensus 476 ~~~q~aL~l-----~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLL-----SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHc-----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 888888866 66667777777777777777777766555443
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.73 E-value=2.9e-16 Score=117.00 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
++.-+.++..|..++..|++++|...|+-+..++|.++..|+++|.|+..+|+|++|+..|.+++.++|+++.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCC
Q 020914 84 ILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p 106 (320)
|++.+|+.+.|++.|+.++....
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999874
No 41
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=8e-16 Score=127.27 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---H
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---G 77 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~ 77 (320)
+..+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45678999999999999999999999999999999876 68899999999999999999999999999998776 7
Q ss_pred HHHHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 78 YFRKGCILEAM--------EQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 78 ~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
++.+|.++... |++++|++.|+++++.+|++..++..+.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999987 8999999999999999999987765443
No 42
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=7.7e-16 Score=131.25 Aligned_cols=223 Identities=11% Similarity=-0.005 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
|+..+++--.-.++...+++++|+..+.++|+++|++..+|..+|.++..+| ++++++..++++++.+|++..+|+.+|
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 4455566555566778899999999999999999999999999999999999 689999999999999999999999999
Q ss_pred HHHHHccCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914 83 CILEAMEQY--DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (320)
Q Consensus 83 ~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (320)
.++..+|+. ++++..++++++++|.+..+|...+.+....|.++++++... ..+... .....++.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~--~~I~~d-----------~~N~sAW~ 180 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH--QLLEED-----------VRNNSAWN 180 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHC-----------CCchhHHH
Confidence 999999974 788999999999999999999999999999999998876642 111111 11122222
Q ss_pred hhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH----hhHH--HHHH
Q 020914 161 WKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF----LRQY--ADDS 233 (320)
Q Consensus 161 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~----~~~~--A~~~ 233 (320)
.++..-... .. +.. .....++++++..+++.++|.....|. +|.++.. +.+. |++.
T Consensus 181 ~R~~vl~~~----------~~---l~~----~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 181 QRYFVITRS----------PL---LGG----LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHHhc----------cc---ccc----ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 222110000 00 000 001134677788899999999998887 6666665 3333 8888
Q ss_pred HHHHhchhCCCCCCChhHhhhccccccc
Q 020914 234 FSSAACLVAPKSIISYPQVWRGQGLRKW 261 (320)
Q Consensus 234 ~~~al~~~~~~~~~~~~~~~~~~~~~~~ 261 (320)
+.+++.. +|..+.+.-.++.++.
T Consensus 244 ~~~~~~~-----~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 244 CLEVLSK-----DSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHhhcc-----cCCcHHHHHHHHHHHH
Confidence 8888875 5665666666665554
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=2.6e-15 Score=134.00 Aligned_cols=263 Identities=10% Similarity=-0.008 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCI 84 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~ 84 (320)
.+......|...+..|+++.|.+...++.+..|+....+...|.+...+|+++.|...+.++.+..|++. .+....+.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 4556678899999999999999999999999998888888999999999999999999999999999885 566668999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHh------------HH-----
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV--DMVQH------------LD----- 145 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~------------~~----- 145 (320)
+...|++++|...+++.++..|+++.++..++.++...|++++|.+........ ..... +.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999888764321110 00000 00
Q ss_pred ----H-------------HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc-----ChhHHhhhcChhHHHHhh
Q 020914 146 ----E-------------FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-----DAKVYFLLDKEKTDTEKY 203 (320)
Q Consensus 146 ----~-------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-----~~~~~~~lg~~~~A~~~~ 203 (320)
. ..+.+...++..+...|..+.|...++++++..++.... ..-.....++...+++.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 0 122333334444555555666666666665544443311 000233346777888888
Q ss_pred hhhhccccCcC--Ccc-chhhHHHHhhHH--HHHHHH--HHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914 204 APIVNVDKAFE--SPH-THGSCFQFLRQY--ADDSFS--SAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE 274 (320)
Q Consensus 204 ~~a~~~~~~~~--~~~-~~g~~~~~~~~~--A~~~~~--~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 274 (320)
+++++..|.+. ... .+|.++...+++ |.+.|+ ++++. .|+... +..+|.+++.+|+.+++..-+.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-----~p~~~~-~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-----QLDAND-LAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----CCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888876 333 388888888888 999999 46555 444444 4588888999998887754443
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=1e-15 Score=146.62 Aligned_cols=260 Identities=12% Similarity=0.054 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++........+....|++++|+..+.+++..+|..+.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44455556666888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
++...|++++|+..++++++.+|+++. +..+|.++...|+.++|+... ...+... +....+...++.+....+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l--~~al~~~----P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAM--TQALPRA----PQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHH--HHHHHhC----CCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999 999999999999999997664 3333322 223333334455554444
Q ss_pred HHHHHHHHHHHHHHhHh---hccccChh-----HH-----hhhcCh---hHHHHhhhhhhccccCc---CCccch-----
Q 020914 164 VFSFVVETMETAVKSWH---ETSKVDAK-----VY-----FLLDKE---KTDTEKYAPIVNVDKAF---ESPHTH----- 219 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~---~~~~~~~~-----~~-----~~lg~~---~~A~~~~~~a~~~~~~~---~~~~~~----- 219 (320)
....|+..++++.. .+ ..+..++. .. ...+++ ++|++.++.+++..|.. ......
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 44545544443221 00 00000111 11 112233 77899999998663322 211111
Q ss_pred hhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 220 GSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 220 g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
...+...+++ |+..|+++++..+ ..|.++..|. |.++..+|+++++...++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~--~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQ--IIPPWAQRWV--ASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCC--CCCHHHHHHH--HHHHHhcCCcHHHHHHHHH
Confidence 1223456777 9999999886622 2355566665 7789999999998776655
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1e-15 Score=133.60 Aligned_cols=222 Identities=13% Similarity=0.103 Sum_probs=148.4
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR- 80 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~- 80 (320)
..|.++++|..+|.+....++=..||..+++|++++|++-.++..||.+|...|.-.+|+.++.+=|...|.....-..
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~ 393 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAG 393 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccC
Confidence 4799999999999999999999999999999999999999999999999999999999999998877665432111000
Q ss_pred ------HHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914 81 ------KGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS 152 (320)
Q Consensus 81 ------lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 152 (320)
.+.-......+..-.+.|-.+....| .++++...||.++...|++++|+..+
T Consensus 394 ~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf-------------------- 453 (579)
T KOG1125|consen 394 ENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF-------------------- 453 (579)
T ss_pred ccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH--------------------
Confidence 00000001112222334444444445 44555555555555555444443221
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhh
Q 020914 153 EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGS 221 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~ 221 (320)
+.++...|+ ++..-.+..+|+..|.+|+++.|.++-... +|.
T Consensus 454 ---------------------------~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 454 ---------------------------EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred ---------------------------HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 111111111 222445677888899999999999876655 899
Q ss_pred HHHHhhHH--HHHHHHHHhchhCCCCCCCh-----hHhhhcccccccccCcccchh
Q 020914 222 CFQFLRQY--ADDSFSSAACLVAPKSIISY-----PQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 222 ~~~~~~~~--A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 270 (320)
++..+|-| |++.|-.||.+.+......- ..+|-.+-.++..+++.+-..
T Consensus 507 S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99999999 99999999988665332222 357777777777777666443
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.70 E-value=1.4e-15 Score=114.63 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=107.5
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
..|.++...+.+|..++..|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++.++|+++..++.+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
|.++...|++++|+..|+++++++|++.......
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 125 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEYSELK 125 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999999999999999999999987765443
No 47
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.69 E-value=1.3e-15 Score=132.66 Aligned_cols=114 Identities=34% Similarity=0.559 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
.+...|..++..|+|++|+..|.++++++|+++.+++++|.+|..+|++++|+..+++++.++|+++.+|+.+|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
|+|++|+..|+++++++|++..+...++.+...+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988886655
No 48
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.69 E-value=1.1e-15 Score=121.97 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=84.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHH
Q 020914 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL-EAMEQ--YDDALS 96 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~~~--~~~A~~ 96 (320)
.++.++++..++++++.+|+++.+|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566677777777777777777777777777777777777777777777777777777777777764 55566 477777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 97 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++++++++|++..++..+|..+...|++++|+...
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777777777777777777777776653
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=3.7e-15 Score=122.41 Aligned_cols=130 Identities=19% Similarity=0.208 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQWEKGYFR 80 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~ 80 (320)
.|.++..+..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+..+++++... |.....+..
T Consensus 61 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 140 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN 140 (234)
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999999864 567789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|....
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997764
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6e-17 Score=135.77 Aligned_cols=252 Identities=20% Similarity=0.227 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..+.....+|..++.+.+|.+|+..|..||+..|+++..|.+++.++..+|+++.|....++.++++|+.+..+...++|
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHH------------hhC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914 85 LEAMEQYDDALSAFQTAL------------QYN------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al------------~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 146 (320)
+..+++..+|.+.|+..- .+- |....+...-+.++...+++++|+..... ...++.
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~------ilkld~ 200 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID------ILKLDA 200 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH------HHhccc
Confidence 998888888876555211 111 22233344445677777777777544211 111112
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------------------HHhhhcChhHHHHhhh
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------------------VYFLLDKEKTDTEKYA 204 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------------------~~~~lg~~~~A~~~~~ 204 (320)
...+...--|.++......+. ++.+|.+++.++|. -.+..|++..|.+.|.
T Consensus 201 ~n~~al~vrg~~~yy~~~~~k-------a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADK-------AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred chhHHHHhcccccccccchHH-------HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 222222222333333333333 33333333333332 3445566666666666
Q ss_pred hhhccccCcCCc-----cchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914 205 PIVNVDKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE 274 (320)
Q Consensus 205 ~a~~~~~~~~~~-----~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 274 (320)
.++.++|+.... +.++.+...+|+. |+..-+.|+++ ++.|-.++.-+|+|+..+++++++...++
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666654221 1133333444444 66666666666 56666666666666666666665555443
No 51
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.9e-15 Score=123.59 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH----------------------------------HHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL----------------------------------FSNRAA 49 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------------------~~~lg~ 49 (320)
|++..-+..+|++++..|++.+|+-.|+++..++|..... |+--|.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 6678889999999999999999999999999999986433 333444
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 50 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
..+..+++..|+.+-+++|+.+|++.+++...|.++..+|+.++|+-.|+.|..+.|....+|..|-.+|...|++.+|.
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 55555667899999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHhhhhHHHHhHHHHHHHHhhhhc-chhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhH
Q 020914 130 EVENIRSNVDMVQHLDEFKSEMSEKYG-AEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT 198 (320)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~ 198 (320)
.+-. ..+. .-+........+| .+... --..-++|-..+++++.+.|. .....|+++.
T Consensus 389 ~~An--~~~~----~~~~sA~~LtL~g~~V~~~------dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 389 ALAN--WTIR----LFQNSARSLTLFGTLVLFP------DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred HHHH--HHHH----Hhhcchhhhhhhcceeecc------CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccch
Confidence 5421 1111 1111112222222 11110 011234555566666777775 6777899999
Q ss_pred HHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcc
Q 020914 199 DTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQ 256 (320)
Q Consensus 199 A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~ 256 (320)
++..+++++...|+......+|.++.....+ |++.|..|+.+ +|..-.+..|+
T Consensus 457 ~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-----dP~~~~sl~Gl 511 (564)
T KOG1174|consen 457 IIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-----DPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CccchHHHHHH
Confidence 9999999999988766555599999999998 99999999988 55555555543
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.66 E-value=1.5e-15 Score=115.23 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
-...|+++++++|++ +..+|.++...|++++|+..|++++.++|.+..+|..+|.++..+|++++|+..|+++++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 357899999999974 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 106 PQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 106 p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
|+++.++..+|.++...|++++|+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999997764
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.66 E-value=9.2e-15 Score=114.09 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=123.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR 80 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~ 80 (320)
.|+...+|..++.+|...|+.+.|.+.|++|+.++|++.++++|.|..+..+|++++|...|++|+.. .|..+..|-+
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN 144 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN 144 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh
Confidence 58889999999999999999999999999999999999999999999999999999999999999984 3566889999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
+|.|-.+.|+++.|.++|+++|+++|+++.+...++..+...|++-.|....+
T Consensus 145 ~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 145 LGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2.3e-14 Score=127.41 Aligned_cols=258 Identities=10% Similarity=-0.018 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHhcCCCCHHH-HHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-AAAFLHLVKLNKALADAETTISLNPQWEKG-YFRKGC 83 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~lg~ 83 (320)
.+...+..|...+..|+|++|.+...++-+..+ ++..++.+ +.+....|+++.|...+.++.+.+|++..+ ....+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 456678889999999999999988887665433 35555555 555599999999999999999999998644 345599
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-H----HH----------------
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVD-M----VQ---------------- 142 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~----~~---------------- 142 (320)
++...|++++|+..+++.++.+|+++.+...++.++...|++++|.++........ . ..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986643221100 0 00
Q ss_pred ---------------hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHhhhcChhHHHHh
Q 020914 143 ---------------HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFLLDKEKTDTEK 202 (320)
Q Consensus 143 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~lg~~~~A~~~ 202 (320)
...+..+.+...++......|....+.+.+++++.. .-++. .....++.+++++.
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-----~~~~~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-----QYDERLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHHHHHHhhccCCChHHHHHH
Confidence 000112233334455555555566666666555431 11222 22344889999999
Q ss_pred hhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 203 YAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 203 ~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
.+..++..|++..... .|.++...+++ |.+.|+++++. .|+... +..++.++.++|+.+++...+.+
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~-~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYD-YAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998765554 89999999999 99999999988 666543 45678889999998887655544
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=1.3e-14 Score=129.17 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=133.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 70 (320)
.|........+|..|..+|+|+.|+..++.|+++ .|.-......+|.+|..++++.+|+..|++|+.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666777888999999999999999999999988 6665677777999999999999999999999987
Q ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914 71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--------QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV 138 (320)
Q Consensus 71 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 138 (320)
+|..+.++.+||.+|...|+|++|..++++|+++.. .-...+..++.+....+++++|..++. ..+
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q--~al 352 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ--KAL 352 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH--HHH
Confidence 355567899999999999999999999999999832 224457777888888889999887753 222
Q ss_pred HHHH----hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914 139 DMVQ----HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181 (320)
Q Consensus 139 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 181 (320)
.... ......+.+...+|..+...|.+.+|...+++|+...+.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 2221 111234455555566566556566666666655555443
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.3e-15 Score=128.12 Aligned_cols=121 Identities=42% Similarity=0.685 Sum_probs=115.6
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.+|..+..-...|+.++..|+|..|+..|.+||..+|+++.+|.|+|.||..+|.+..|+.+.+.+++++|++..+|.+.
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 35777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
|.++..+.+|+.|++.|+++++.+|++.++...+..+...+
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988887764
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.8e-14 Score=117.78 Aligned_cols=255 Identities=15% Similarity=0.154 Sum_probs=168.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD---PS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
|.-+.++++ .+++..++...|-......++++ |. +...-..+|.||.++|-+.+|...++.+|+..|
T Consensus 178 p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~- 254 (478)
T KOG1129|consen 178 PTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP- 254 (478)
T ss_pred hHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-
Confidence 444455554 46677777777776666555442 21 123335689999999999999999999998776
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
.++.+..++.+|.+..+...|+..|...++..|.+.......+++++.+++++.|.+++.... + ..+...+...
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl--k----~~~~nvEaiA 328 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL--K----LHPINVEAIA 328 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH--h----cCCccceeee
Confidence 678888899999999999999999999999999999999889999888888888866642110 0 0011111111
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCcc-chhhHHHHhhHH--H
Q 020914 154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLRQY--A 230 (320)
Q Consensus 154 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~-~~g~~~~~~~~~--A 230 (320)
..+ .-|+.-++.+-|+.+|.+.++++-.....+ .+|.|-...++| +
T Consensus 329 cia-------------------------------~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 329 CIA-------------------------------VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred eee-------------------------------eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 111 156666777777777777777754443333 267776666776 7
Q ss_pred HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccccccccccccccccccccccCccc
Q 020914 231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEV 300 (320)
Q Consensus 231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (320)
+.+|++|+....... .-.++|+|+|.+....|++.-+..+|.-.+..++....++++.++.-.+..+|
T Consensus 378 L~sf~RAlstat~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 378 LPSFQRALSTATQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHHhhccCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 777777776543221 12566777777777777776666666555555555555555555554444444
No 58
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=4.1e-14 Score=120.70 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCCCHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL--NKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~~~ 79 (320)
+|++..+|..+|.++...| ++++|+..+.++++.+|++..+|+.++.++..+|+. ++++.+++++++++|++..+|.
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~ 146 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWS 146 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHH
Confidence 6889999999999999999 689999999999999999999999999999999974 7889999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
.+|.++..+|++++|++++.++|+.+|.+..+|...+.+....
T Consensus 147 ~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 147 HRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999887654
No 59
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.63 E-value=1.1e-14 Score=116.21 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=105.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHhcCCCCHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAF-LHLVK--LNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
+|+++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|...++++++++|+++.+++
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 6889999999999999999999999999999999999999999999985 67787 59999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.+|.+++.+|++++|+.+++++++++|.+..-...+
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999999999999999999999876554333
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.62 E-value=3e-15 Score=127.25 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
++.++.+.|++.+..|++++|.+.|++|+.-+....++++++|.++..+|+.++|+++|-+.-.+--++++++++++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45678899999999999999999999999999989999999999999999999999999988888888999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (320)
..+.+..+|++.+.++..+-|+++.++..|+.++...|+..+|....- +.. ..-+...+.. .|.+.+
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y-----dsy-ryfp~nie~i-------ewl~ay 635 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY-----DSY-RYFPCNIETI-------EWLAAY 635 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh-----hcc-cccCcchHHH-------HHHHHH
Confidence 999999999999999999999999999999999999999888865421 111 1111122222 233444
Q ss_pred HHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCc
Q 020914 166 SFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 166 ~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
..-.+..++++..|+++..+.|+ ++...|++++|.+.|...-.--|..
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 44455566677777777777775 8889999999999998877665554
No 61
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1.2e-15 Score=129.61 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+++++|+..++++.+.++ ++..+....
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l 117 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSAL 117 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHH
Confidence 477888899999999999999999999999999999888888888888 789999999999999887664 567777788
Q ss_pred HHHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYN--PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (320)
.++...++++++...++++.... |.++..|..+|.++...|+.++|+..+ +..+... +....+...++....
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~--~~al~~~----P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY--RKALELD----PDDPDARNALAWLLI 191 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH--HHHHHH-----TT-HHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHcC----CCCHHHHHHHHHHHH
Confidence 88999999999999999977655 678889999999999999999997664 3343333 334444555666666
Q ss_pred hhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHH
Q 020914 161 WKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSF 234 (320)
Q Consensus 161 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~ 234 (320)
..|....+...+.......+....+... ++..+|++++|+..+++++..+|.+..... ++.++...|++ |...+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6777766555555544443333333332 899999999999999999999987654443 88888899998 88888
Q ss_pred HHHhch
Q 020914 235 SSAACL 240 (320)
Q Consensus 235 ~~al~~ 240 (320)
.+++..
T Consensus 272 ~~~~~~ 277 (280)
T PF13429_consen 272 RQALRL 277 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 887743
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=1.1e-14 Score=129.76 Aligned_cols=235 Identities=13% Similarity=0.122 Sum_probs=180.9
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 020914 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY---- 104 (320)
Q Consensus 37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 104 (320)
+|.-..+...+|..|..+|++++|+..+++|+++ .|.-......+|.+|..+++|.+|+..|++||.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555678888999999999999999999999998 5666666777999999999999999999999997
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHh
Q 020914 105 ----NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV--QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKS 178 (320)
Q Consensus 105 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 178 (320)
+|.-..++.+|+.++...|++.+|....+....+... ....+.........+......+.++.+..++.++++.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4555678999999999999999998775433222211 1122334445555666677788888999999998888
Q ss_pred HhhccccCh-h----------HHhhhcChhHHHHhhhhhhccccCcC---------CccchhhHHHHhhHH--HHHHHHH
Q 020914 179 WHETSKVDA-K----------VYFLLDKEKTDTEKYAPIVNVDKAFE---------SPHTHGSCFQFLRQY--ADDSFSS 236 (320)
Q Consensus 179 ~~~~~~~~~-~----------~~~~lg~~~~A~~~~~~a~~~~~~~~---------~~~~~g~~~~~~~~~--A~~~~~~ 236 (320)
+.++..... . .|...|++++|.+.|++++++..... ..|.+|..+..++.+ |...|+.
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 886554333 2 89999999999999999998864331 123366667777777 8888988
Q ss_pred Hhchh--CCCCCCChhHhhhcccccccccCcccchhh
Q 020914 237 AACLV--APKSIISYPQVWRGQGLRKWRHSQQDGFFV 271 (320)
Q Consensus 237 al~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 271 (320)
++.+. -....|+....+.|++.+|..+|+++.+..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 88775 122344556679999999999999998863
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=6.4e-15 Score=125.30 Aligned_cols=224 Identities=17% Similarity=0.126 Sum_probs=181.9
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 10 LKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 10 ~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
-.++...++.+| ++.+|.++-..|+.++..++.+..+.|.+-+..|++++|.+.|+.+|..+..+.++++++|..+..
T Consensus 457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred hhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 344555555543 688888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHH
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSF 167 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (320)
+|+.++|+++|-+.-.+--++.+++..++.++..+.+..+|++++. ....+-+..+.+...+++.+...|+-.+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~------q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM------QANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH------HhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 9999999999999999999999999999999999999999988752 2222334566777788888888888877
Q ss_pred HHHHHHHHHHhHhhcccc---ChhHHhhhcChhHHHHhhhhhhccccCcCCccc--hhhHHHHhhHH--HHHHHHHHhch
Q 020914 168 VVETMETAVKSWHETSKV---DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT--HGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 168 a~~~~~~a~~~~~~~~~~---~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~--~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
+.+.+-.....|+-.+.. ....|....=.++|+.+++++.-+.|+.. .|. .+.|+...|.| |.+.|...-..
T Consensus 611 afq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 611 AFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 777666555555543322 11256666678899999999999988753 343 78899999999 99999888766
No 64
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.60 E-value=2.9e-14 Score=132.92 Aligned_cols=130 Identities=12% Similarity=0.008 Sum_probs=126.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++++++.+|.+....|++++|+..++.++++.|++..++.+++.++.+++++++|+..+++++..+|+++.+++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998775
No 65
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.4e-14 Score=117.60 Aligned_cols=123 Identities=25% Similarity=0.398 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
.+......|+.+++.|+|..|...|++|+..-+.. ..++.|++.|+.++++|.+|+..++++|.+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 35567889999999999999999999998763321 367999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 71 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
+|+|+.++|++|.++..+|+|+.|+..|++++++.|+|..+...+..+......+...
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888777666554
No 66
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.58 E-value=6.8e-14 Score=132.72 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=116.6
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
..|..+...+..+.+.+++|+++.|+..|+++++.+|.++.+...+..++...|+.++|+..+++++.-.|........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 46788999999999999999999999999999999999975555999999999999999999999994444455555556
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
|.++..+|++++|++.|+++++.+|+++.++..++.++...++.++|++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 889999999999999999999999999999999989999999999997664
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=3.8e-13 Score=123.02 Aligned_cols=105 Identities=18% Similarity=0.238 Sum_probs=102.7
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
..|.++.+|+.+|.+|-.+|+.++|..+.-.|-.++|++.+.|..++....++|++.+|+-+|.+||+.+|.+.+..+.+
T Consensus 168 qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~er 247 (895)
T KOG2076|consen 168 QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYER 247 (895)
T ss_pred hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
+.+|.++|+...|...|.+++..+|
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=3.2e-13 Score=119.46 Aligned_cols=244 Identities=13% Similarity=0.128 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|....+++.++.-.+..++|...+...+..++..|.+++.+-..|..+..+|+-++|......++..++...-+|+.+|.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGL 83 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
++....+|++|+++|+.|++++|+|..+|.-++.+...+++++-..+.... ...+.+.....+..+.....-.|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~------LLql~~~~ra~w~~~Avs~~L~g 157 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ------LLQLRPSQRASWIGFAVAQHLLG 157 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH------HHHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877544211 11112222233333444445556
Q ss_pred HHHHHHHHHHHHHHhHhhccccChh-------------HHhhhcChhHHHHhhhhhhc-cccCcCCccchhhHHHHhhHH
Q 020914 164 VFSFVVETMETAVKSWHETSKVDAK-------------VYFLLDKEKTDTEKYAPIVN-VDKAFESPHTHGSCFQFLRQY 229 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~~-------------~~~~lg~~~~A~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~ 229 (320)
....+.+..+.-..... ..+.+. +....|..++|++....--. +-.......+.+.++..++++
T Consensus 158 ~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 66666666555433322 111111 44455665665544432211 111112233467777888888
Q ss_pred --HHHHHHHHhchhCCCCCCChhHhhhcccccc
Q 020914 230 --ADDSFSSAACLVAPKSIISYPQVWRGQGLRK 260 (320)
Q Consensus 230 --A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 260 (320)
|+..|..-+.. +|+..+-+.++-.++
T Consensus 236 EeA~~~y~~Ll~r-----nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 236 EEAVKVYRRLLER-----NPDNLDYYEGLEKAL 263 (700)
T ss_pred HhHHHHHHHHHhh-----CchhHHHHHHHHHHH
Confidence 88888888866 444444344443444
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=6.5e-14 Score=114.60 Aligned_cols=233 Identities=14% Similarity=0.104 Sum_probs=173.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ 90 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 90 (320)
.++|++|+..|-+.+|...++.+++..| .++.+..++.+|.+..+...|+..+...+...|.++-.....+.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4689999999999999999999999888 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHH
Q 020914 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVE 170 (320)
Q Consensus 91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 170 (320)
+++|.+.|+.+++.+|.+.++..-++.-+...++.+-|..++. ..+. +....+++..+.|.+-..-+.++.++
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR--RiLq----mG~~speLf~NigLCC~yaqQ~D~~L- 378 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR--RILQ----MGAQSPELFCNIGLCCLYAQQIDLVL- 378 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH--HHHH----hcCCChHHHhhHHHHHHhhcchhhhH-
Confidence 9999999999999999999998888888878888888866642 2221 22223334444444433333333333
Q ss_pred HHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcccc--Cc-CCcc-chhhHHHHhhHH--HHHHHHHHhchhCCC
Q 020914 171 TMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDK--AF-ESPH-THGSCFQFLRQY--ADDSFSSAACLVAPK 244 (320)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~--~~-~~~~-~~g~~~~~~~~~--A~~~~~~al~~~~~~ 244 (320)
..+++++.... .. ...| .+|.+....|.+ |..+|+-|+..
T Consensus 379 ------------------------------~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---- 424 (478)
T KOG1129|consen 379 ------------------------------PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---- 424 (478)
T ss_pred ------------------------------HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc----
Confidence 33333333211 11 1122 256666666777 88888888866
Q ss_pred CCCChhHhhhcccccccccCcccchhhhcccccccccccccc
Q 020914 245 SIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPS 286 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
+++..+++.|+|....+-|+.+++..-+..+....++....
T Consensus 425 -d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 425 -DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred -CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 77778888888888888888888766666655554443333
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.56 E-value=1.7e-13 Score=109.31 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.+...+...|...+..|+|.+|+..+.++..++|++.++|..+|.+|.++|+.++|...|.+++++.|+.+.+..++|
T Consensus 96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 34555566667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
..|.-.|+++.|...+..+....+.+..+..+++.+....|++++|..+
T Consensus 176 ms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 7777777777777777777777777777777777777777777777655
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=4.9e-13 Score=126.96 Aligned_cols=271 Identities=13% Similarity=0.076 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.....+..+|..+..+|++++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|++... ..++.
T Consensus 99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 34455666668899999999999999999999999999999999999999999999999999999999986554 56677
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----H-----HH-------------
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV----D-----MV------------- 141 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-----~~------------- 141 (320)
++..+++..+|++.|+++++.+|++.+++..+..+....|-...|.++....... + ..
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence 7767888877999999999999999999888888877777776666553311100 0 00
Q ss_pred -------HhHHHHHH---HHhhhhcc----------hhhhhhHHHHHHHHHHHHHHhHhhcccc---Chh--------HH
Q 020914 142 -------QHLDEFKS---EMSEKYGA----------EECWKHVFSFVVETMETAVKSWHETSKV---DAK--------VY 190 (320)
Q Consensus 142 -------~~~~~~~~---~~~~~~~~----------~~~~~~~~~~a~~~~~~a~~~~~~~~~~---~~~--------~~ 190 (320)
..++.... .+....+. ....+-..-...+.+.+++..|+..... .|. +|
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 00000000 00100000 0011111223345566666666553311 122 88
Q ss_pred hhhcChhHHHHhhhhhhccccCc-----CCccchhhH--HHHhhHH--HHHHHHHHhchhC----------CCCCCChhH
Q 020914 191 FLLDKEKTDTEKYAPIVNVDKAF-----ESPHTHGSC--FQFLRQY--ADDSFSSAACLVA----------PKSIISYPQ 251 (320)
Q Consensus 191 ~~lg~~~~A~~~~~~a~~~~~~~-----~~~~~~g~~--~~~~~~~--A~~~~~~al~~~~----------~~~~~~~~~ 251 (320)
..+++.++|+..|..++.-++.. ......+.+ +...++| |....++..+..| ..++|++.+
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 89999999999999987755321 111113333 3345567 8888888876433 157888888
Q ss_pred hhhcccccccccCcccchhhhccc
Q 020914 252 VWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 252 ~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
+...++.++.-.|+..++...+++
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888889989999999888777765
No 72
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=4.7e-13 Score=102.23 Aligned_cols=124 Identities=35% Similarity=0.602 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
..+..+...|+.++..|+|++|..-|..||++.|.. ..+|.++|.++.++++++.|+..+.++|+++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 346778899999999999999999999999999876 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
++|.+|..+..|++|++.|++.++.+|...++...+.++--......++
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999988888776655555444
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.55 E-value=1.1e-13 Score=104.25 Aligned_cols=105 Identities=11% Similarity=0.130 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 28 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
+.|++++..+|++..+.+.+|.++...|++++|+..+++++.++|+++.++..+|.++..+|++++|+..|+++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 108 SAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++..+..+|.++...|++++|....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999997764
No 74
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.54 E-value=3.9e-14 Score=116.59 Aligned_cols=226 Identities=16% Similarity=0.169 Sum_probs=152.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 89 (320)
+..+|+.|+.+|+|++||.||.+++..+|.++..+.++|.+|+++..+..|...++.|+.++..+..+|.++|.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV 169 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 169 (320)
...+|.+.++.+|++.|++.+....++.+.. ..++.-........ .+........+ .....|....-.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I~~KsT~G~--~~A~Q~~~Q~l------~~K~~G~~Fsk~ 247 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKIATKSTPGF--TPARQGMIQIL------PIKKPGYKFSKK 247 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhHHhhcCCCC--Cccccchhhhc------cccCcchhhhhh
Confidence 9999999999999999998877766655432 22221110000000 00000000000 011122222333
Q ss_pred HHHHHHHHhHhhccc---------cChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHH
Q 020914 170 ETMETAVKSWHETSK---------VDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSA 237 (320)
Q Consensus 170 ~~~~~a~~~~~~~~~---------~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~a 237 (320)
+.++.++.++..... ++...|....+++.++....+++..+|.+.-... .|.+-..++.. +...|+.+
T Consensus 248 ~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 248 AMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred hccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 444445544443221 2222566666677777666666666666543332 55555555555 66677777
Q ss_pred hchhCCCCCC
Q 020914 238 ACLVAPKSII 247 (320)
Q Consensus 238 l~~~~~~~~~ 247 (320)
+.+.|.+..+
T Consensus 328 ~~~~P~~~~~ 337 (536)
T KOG4648|consen 328 VKVAPAVETP 337 (536)
T ss_pred eeeccccccc
Confidence 7664444433
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=3e-13 Score=111.88 Aligned_cols=129 Identities=19% Similarity=0.224 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHhcCC
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLHL--------VKLNKALADAETTISLNP 72 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p 72 (320)
|....+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++... |++++|+..|++++..+|
T Consensus 67 ~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 67 PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC
Confidence 344578999999999999999999999999999998875 799999999987 899999999999999999
Q ss_pred CCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 73 QWEKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 73 ~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++..++ ..+|.+|+..|++.+|+..|+++++..|+. +.++..+|.++...|++++|....
T Consensus 147 ~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~ 226 (235)
T TIGR03302 147 NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAA 226 (235)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 986542 467899999999999999999999997765 589999999999999999997653
No 76
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.54 E-value=3.4e-13 Score=99.03 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFR 80 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~ 80 (320)
++.++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
+|.++..+|++++|+..++++++..|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999877653
No 77
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.53 E-value=9.1e-13 Score=124.10 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=160.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-------
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE------- 75 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------- 75 (320)
+|.+..+|..+...+...+++++|+...+.+++.+|+...+++.+|.++.+.+++++|... .++.+.+.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 5788999999999999999999999999999999999999999999999999998877766 6777666655
Q ss_pred ------------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Q 020914 76 ------------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH 143 (320)
Q Consensus 76 ------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 143 (320)
.+++.+|.||-++|+.++|...|+++|+++|+++.+..++|..+... +.++|+.+.. +++.....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~--KAV~~~i~ 181 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK--KAIYRFIK 181 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH--HHHHHHHh
Confidence 89999999999999999999999999999999999999999999988 9999988753 22222111
Q ss_pred HHHH--HHHHhhhhcchhhhhh-HHHHHHHHHHHHHHhHhhccc-cCh--hHHhhhcChhHHHHhhhhhhccccCcCCcc
Q 020914 144 LDEF--KSEMSEKYGAEECWKH-VFSFVVETMETAVKSWHETSK-VDA--KVYFLLDKEKTDTEKYAPIVNVDKAFESPH 217 (320)
Q Consensus 144 ~~~~--~~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~-~~~--~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~ 217 (320)
.... ..+++..+.......+ .+...+......+. +.+... +.| ..|....++++++..++.+++++|......
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 1100 0111111111111111 11111122221111 111111 111 177788899999999999999998865442
Q ss_pred c-hhhHHHHhhHH-HHHHHHHHhch
Q 020914 218 T-HGSCFQFLRQY-ADDSFSSAACL 240 (320)
Q Consensus 218 ~-~g~~~~~~~~~-A~~~~~~al~~ 240 (320)
. +..||. +.| ....|+..+++
T Consensus 261 ~~l~~~y~--~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 261 EELIRFYK--EKYKDHSLLEDYLKM 283 (906)
T ss_pred HHHHHHHH--HHccCcchHHHHHHH
Confidence 2 444444 666 54555555543
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=1.3e-12 Score=116.09 Aligned_cols=224 Identities=8% Similarity=-0.003 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLF-SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
.+...+......|+++.|..++.++.+.+|+...+. ...+..+...|++++|+..+++.++.+|+++.++..++.+|..
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344446666999999999999999999999875443 4459999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHH------------------------------------------HHHHHHHHHHHHHH
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEV------------------------------------------SRKIKRVSQLAKDK 125 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~------------------------------------------~~~l~~~~~~~~~~ 125 (320)
.|++++|++.+.+..+..+.++.. ...++..+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 999999998888888765554332 22223333333333
Q ss_pred HHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---hhHHhhhcChhHHHHh
Q 020914 126 KRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---AKVYFLLDKEKTDTEK 202 (320)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~lg~~~~A~~~ 202 (320)
++|..... ..... +....+...++.+ ..+....++...++..+..++...+. ..++...+++.+|.+.
T Consensus 280 ~~A~~~L~--~~l~~-----~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 280 DTAQQIIL--DGLKR-----QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred HHHHHHHH--HHHhc-----CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 33322211 00000 0011111111111 11334444444444333333222111 1188888999999999
Q ss_pred hhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchh
Q 020914 203 YAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLV 241 (320)
Q Consensus 203 ~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~ 241 (320)
+++++++.|+......++.++...|+. |..+|++++.+.
T Consensus 351 le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999876545688899999888 999999998764
No 79
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.52 E-value=1.7e-12 Score=107.11 Aligned_cols=214 Identities=15% Similarity=0.185 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
.+......++..|++..||.+..+.|++.|-++..+..++.||...|+...||..++.+-++..++.+.++.++.+++..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v 236 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV 236 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence 45556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV 168 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 168 (320)
|+.+.++...+.+|+++|++..++-..-.+....+..+.+.+..+ .+.+..+
T Consensus 237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie----------------------------~~~~t~c 288 (504)
T KOG0624|consen 237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIE----------------------------EKHWTEC 288 (504)
T ss_pred hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHh----------------------------hhhHHHH
Confidence 999999999999999999998776554444333333333322110 1111112
Q ss_pred HHHHHHHHHhHhhccccCh-------hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914 169 VETMETAVKSWHETSKVDA-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAA 238 (320)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al 238 (320)
+...++.++.-+....+.- .++..-|++.+|+.....+++++|+.....- ++.+|..-+.| |+..|++|.
T Consensus 289 le~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 289 LEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2222222221111111111 1666666777777777777777776543332 55566666666 777777777
Q ss_pred chhCCCCCCChhHhhhc
Q 020914 239 CLVAPKSIISYPQVWRG 255 (320)
Q Consensus 239 ~~~~~~~~~~~~~~~~~ 255 (320)
+. +++...+-.|
T Consensus 369 e~-----n~sn~~~reG 380 (504)
T KOG0624|consen 369 EL-----NESNTRAREG 380 (504)
T ss_pred hc-----CcccHHHHHH
Confidence 66 4444444443
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=8.9e-13 Score=121.59 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH------------------------------------H
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN------------------------------------R 47 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~------------------------------------l 47 (320)
|.-+.++..+|.+|..--+...|..+|.+|.++||.++.++-. +
T Consensus 489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 3456788889999998889999999999999999886544444 5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 020914 48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127 (320)
Q Consensus 48 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 127 (320)
|..|...++..+|+..|+.++..+|++..+|..+|.+|...|++.-|++.|.+|..++|.+..+.+..+.+....|++.+
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 55555555666888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-hHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914 128 AQEVENIRSN-VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181 (320)
Q Consensus 128 A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 181 (320)
|.......-. ............+...+........|....+...++++++.+.-
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9876542111 11111111122333333444444555566666666666666554
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.51 E-value=6.7e-13 Score=104.11 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=95.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
.+..+..++.+|..+...|++++|+.+|++++...|+. +.++.++|.++..+|++++|+..+++++..+|++..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 45778889999999999999999999999999887653 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHccC--------------HHHHHHHHHHHHhhCCCC
Q 020914 80 RKGCILEAMEQ--------------YDDALSAFQTALQYNPQS 108 (320)
Q Consensus 80 ~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 108 (320)
.+|.++..+|+ +++|++++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999888 567777777777777776
No 82
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=9.4e-14 Score=116.92 Aligned_cols=264 Identities=13% Similarity=0.149 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCCHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLN------PQWEK 76 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~ 76 (320)
...+...|.-+++.|++...+.+|+.|++...++ ..+|..+|.+|..+++|++|+++-..-|.+. -..++
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 3456677889999999999999999999998776 4678999999999999999999876554432 24567
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHH--------------------HHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDK--------------------KRAQE 130 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~--------------------~~A~~ 130 (320)
+--++|+++.-+|.|++|+.+..+-|.+... ...+++++|.+|...|+- +.|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 7889999999999999999999998887543 245889999998776642 11111
Q ss_pred HHHHhhhhHHHHhHHH--HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHh----h-----ccccChhHHhhhcChhHH
Q 020914 131 VENIRSNVDMVQHLDE--FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWH----E-----TSKVDAKVYFLLDKEKTD 199 (320)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~----~-----~~~~~~~~~~~lg~~~~A 199 (320)
+ +..++.....+.. .....+..+|+.++-.|++..++...+.-++.-. + +..-..+++..+|+++.|
T Consensus 177 f--y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 177 F--YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred H--HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 1 1222222222221 1223333444545545544444433332221111 1 111111289999999999
Q ss_pred HHhhhhhhccc----cCc---CCccchhhHHHHhhHH--HHHHHHHHhchhCCC-CCCChhHhhhcccccccccCcccch
Q 020914 200 TEKYAPIVNVD----KAF---ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPK-SIISYPQVWRGQGLRKWRHSQQDGF 269 (320)
Q Consensus 200 ~~~~~~a~~~~----~~~---~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (320)
+++|+..+.+. ... ...+.+|+.|..++.| |+.++.+-+.+...- +...-..+++.+|+++-.+|....+
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 99998877543 222 3345589999999999 999999988764322 2233466788888888888877766
Q ss_pred hhh
Q 020914 270 FVQ 272 (320)
Q Consensus 270 ~~~ 272 (320)
+..
T Consensus 335 l~f 337 (639)
T KOG1130|consen 335 LYF 337 (639)
T ss_pred HHH
Confidence 543
No 83
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.51 E-value=1e-13 Score=91.35 Aligned_cols=67 Identities=22% Similarity=0.466 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCC
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNP 106 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p 106 (320)
++.+|..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555556666666666666666666666666665666666666666655 45666666666665555
No 84
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=6.3e-13 Score=106.04 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=122.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.+... ......+...|+-+.+.....++...+|.+..++...|......|++.+|+..++++..+.|+++++|..+|
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 4666677 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
-+|.+.|++++|...|.+++++.|.++.+..++|..+...|+++.|..+.
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ll 191 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997764
No 85
>PRK15331 chaperone protein SicA; Provisional
Probab=99.49 E-value=1.4e-12 Score=97.85 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+++.-+..+..|.-++..|++++|...|+-....+|.+++.|..+|.|+..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
.||..+|+.+.|+.+|+.++. .|.+..+..
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 999999999999999999999 566555443
No 86
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.49 E-value=9.7e-14 Score=91.45 Aligned_cols=67 Identities=27% Similarity=0.535 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNP 72 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p 72 (320)
++..|..+|.+++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999998
No 87
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.49 E-value=8e-13 Score=92.28 Aligned_cols=99 Identities=34% Similarity=0.626 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCC
Q 020914 89 EQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~ 107 (320)
|++++|...+.++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 88
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.3e-13 Score=114.51 Aligned_cols=237 Identities=14% Similarity=0.134 Sum_probs=173.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI-------------- 68 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------------- 68 (320)
-|+++..|.+++-+++..|+|++|...+++.++++|..+..+...+.|+..+++..+|...++..-
T Consensus 79 ~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~ 158 (486)
T KOG0550|consen 79 CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKL 158 (486)
T ss_pred CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcc
Confidence 477889999999999999999999999999999999998888888888888888877765554211
Q ss_pred -hc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914 69 -SL---NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (320)
Q Consensus 69 -~l---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 144 (320)
.. .|-...+-+..+.|+..+|++++|...--..+++++.+.++....|.++....+.+.++..+. +.+...+..
T Consensus 159 ~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~--qal~ldpdh 236 (486)
T KOG0550|consen 159 APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQ--QALRLDPDH 236 (486)
T ss_pred cccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHh--hhhccChhh
Confidence 00 133455667778888888999999888888888899988888888888887777777765532 222222211
Q ss_pred HHHH-HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh--------------HHhhhcChhHHHHhhhhhhcc
Q 020914 145 DEFK-SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--------------VYFLLDKEKTDTEKYAPIVNV 209 (320)
Q Consensus 145 ~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--------------~~~~lg~~~~A~~~~~~a~~~ 209 (320)
.... .......-..+...|.-..-.+.+..|.++|..++.++|. +...+|+..+|+...+.++.|
T Consensus 237 ~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 237 QKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred hhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 1110 0000011111222344444455666666666666666665 667889999999999999999
Q ss_pred ccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914 210 DKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV 241 (320)
Q Consensus 210 ~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~ 241 (320)
++.+..... .|.|+..++++ |++.|++|++..
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999865555 89999999999 999999999873
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=2.8e-12 Score=115.72 Aligned_cols=260 Identities=15% Similarity=0.083 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CC
Q 020914 7 EMSLKDKGNEFFKA-----------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QW 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 74 (320)
+..++.+|.+|-.+ ....++++.+++|++.+|+|+.+.+.++.-|..+++.+.|.+..++++++++ ++
T Consensus 433 ~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 433 PRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 45566667666432 2357899999999999999999999999999999999999999999999955 67
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI-------------------- 134 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------------------- 134 (320)
+.+|..++.++...+++.+|+.....++.-.|+|......-..+....++.+++......
T Consensus 513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~ 592 (799)
T KOG4162|consen 513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKL 592 (799)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhh
Confidence 999999999999999999999999999999998654433333333333333333322110
Q ss_pred ---hh-----------hhHHHHhHHHH-----------------------------HHHHhhhhcchhhhhhHHHHHHHH
Q 020914 135 ---RS-----------NVDMVQHLDEF-----------------------------KSEMSEKYGAEECWKHVFSFVVET 171 (320)
Q Consensus 135 ---~~-----------~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~a~~~ 171 (320)
.. .+.....+... ...++...+..+...+.-+.+..
T Consensus 593 ~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~- 671 (799)
T KOG4162|consen 593 LRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS- 671 (799)
T ss_pred hhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH-
Confidence 00 00000000000 00011111111111112222222
Q ss_pred HHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHH--HHHH
Q 020914 172 METAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADD--SFSS 236 (320)
Q Consensus 172 ~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~--~~~~ 236 (320)
+..++..+.|. .+...|...+|.+.|..++.++|+.+.... +|.++...|.- |.. ....
T Consensus 672 ------CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 672 ------CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred ------HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 22233333332 566778999999999999999999866655 89999988875 666 8899
Q ss_pred HhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 237 AACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 237 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
|+++ +|..+++|+++|.++..+|+.+.+-++|..+..
T Consensus 746 alr~-----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 746 ALRL-----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHhh-----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9999 888899999999999999999998877766444
No 90
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.5e-11 Score=100.80 Aligned_cols=222 Identities=14% Similarity=0.121 Sum_probs=162.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCI 84 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~ 84 (320)
=+-.|.-++-.++.++|+..|...++.+|...+++..+|..|+..|..+.||..-+..++ .|+. ..+...+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 355788888899999999999999999999999999999999999999999998766655 5654 4588999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (320)
|+..|=++.|...|........--..+...|-.+|...++|++|++.-.....+. .. . .....+..++....
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q--~----~~~eIAqfyCELAq 188 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQ--T----YRVEIAQFYCELAQ 188 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--Cc--c----chhHHHHHHHHHHH
Confidence 9999999999999999888766667899999999999999999987633111110 00 0 01112233333333
Q ss_pred HHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCC--ccchhhHHHHhhHH--H
Q 020914 165 FSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFES--PHTHGSCFQFLRQY--A 230 (320)
Q Consensus 165 ~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~--~~~~g~~~~~~~~~--A 230 (320)
-..+....++|.....+++..+|+ +....|++..|++.++.+++-+|.+.. ...+..||..+|+- .
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 333444444444444444444444 777788888888888888888887732 23366777777776 6
Q ss_pred HHHHHHHhch
Q 020914 231 DDSFSSAACL 240 (320)
Q Consensus 231 ~~~~~~al~~ 240 (320)
+....++.+.
T Consensus 269 ~~fL~~~~~~ 278 (389)
T COG2956 269 LNFLRRAMET 278 (389)
T ss_pred HHHHHHHHHc
Confidence 6666666644
No 91
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=6.2e-12 Score=112.37 Aligned_cols=233 Identities=8% Similarity=0.005 Sum_probs=153.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
|+....+...|.....+|+++.|..++.++.+..|+.. .+....+.++...|++++|...+++.++..|+++.++..++
T Consensus 115 ~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~ 194 (409)
T TIGR00540 115 AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAE 194 (409)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44456678889999999999999999999999988875 56666799999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHH------------------------------------------HHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSR------------------------------------------KIKRVSQ 120 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------------------------------------~l~~~~~ 120 (320)
.++...|++++|++.+.+.++..+.++.... .++..+.
T Consensus 195 ~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 195 EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLI 274 (409)
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999998877544433221 1111111
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc--ccChh---HHhhhcC
Q 020914 121 LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS--KVDAK---VYFLLDK 195 (320)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~~~---~~~~lg~ 195 (320)
..|+.++|.+.. ...+...+............++. ...++...+...++++.+..+... .+.-. ++...|+
T Consensus 275 ~~g~~~~A~~~l--~~~l~~~pd~~~~~~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 275 DCDDHDSAQEII--FDGLKKLGDDRAISLPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HCCChHHHHHHH--HHHHhhCCCcccchhHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc
Confidence 122222221111 00000000000000000000000 111223334444444443333222 11111 7889999
Q ss_pred hhHHHHhhh--hhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhch
Q 020914 196 EKTDTEKYA--PIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 196 ~~~A~~~~~--~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
+++|.++++ .+++..|+......+|.++..+|+. |.+.|++++..
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999 6878888876655689999999998 99999999865
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=8.8e-12 Score=110.53 Aligned_cols=215 Identities=13% Similarity=0.026 Sum_probs=166.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
-|.+.+.+--+|..+...|+-++|..+-..++..++.+...|.-+|.+++.-.+|++|+.+|+.|+.+.|+|...|.-++
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHhHHHHHHHHhhhhcchhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDM--VQHLDEFKSEMSEKYGAEEC 160 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 160 (320)
.+..++++++-....=.+.+++.|.....|...+......|++..|..+.+....... .........++.........
T Consensus 117 lLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 117 LLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877442222111 11111111222222233333
Q ss_pred hhhHHHHHHHHHHHHHHhHhhc---cccChhHHhhhcChhHHHHhhhhhhccccCcCCcc
Q 020914 161 WKHVFSFVVETMETAVKSWHET---SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPH 217 (320)
Q Consensus 161 ~~~~~~~a~~~~~~a~~~~~~~---~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~ 217 (320)
..|..+.+++...+--....+. ......++..+++.++|...|...+..+|+....+
T Consensus 197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 3343444444333222222221 12222389999999999999999999999875443
No 93
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.45 E-value=4.1e-12 Score=99.34 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
...+..++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3457788999999999999999999999999887653 4589999999999999999999999999999999988888
Q ss_pred HHHHHH-------HccCHH-------HHHHHHHHHHhhCCCCH
Q 020914 81 KGCILE-------AMEQYD-------DALSAFQTALQYNPQSA 109 (320)
Q Consensus 81 lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 109 (320)
+|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 888888 667766 55566666777777554
No 94
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.45 E-value=4.8e-12 Score=94.55 Aligned_cols=100 Identities=12% Similarity=0.077 Sum_probs=94.6
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 33 AIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 33 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
...+. ++.-+..+.+|..+...|++++|...|+.+..++|.+...|+++|.|+..+|+|++|+..|.+++.++|+++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34567 77889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020914 112 SRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 112 ~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+.++|.++...|+.+.|.+..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999997653
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=7.6e-12 Score=107.90 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...|+..+|++.+++++.++|+.+..++++|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+|+..|++.+|+..++..+..+|+++..|..|++.+..+|+..++...
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 999999999999999999999999999999999999999998888443
No 96
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=5.5e-12 Score=111.94 Aligned_cols=232 Identities=14% Similarity=0.014 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
..+.|+.-+.....+++.++|+..++++|+..|.....|..+|.++.++++.+.|...|...++..|+.+..|..++.+-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE 729 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence 35667777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (320)
...|+.-.|...++++.-.||++...|...-++..+.|..+.|..+. .+++...+....+..+.....+....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm--akALQecp~sg~LWaEaI~le~~~~r----- 802 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM--AKALQECPSSGLLWAEAIWLEPRPQR----- 802 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCccchhHHHHHHhccCccc-----
Confidence 99999999999999999999999999999999999999999986652 33333333222222111111111000
Q ss_pred HHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914 166 SFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFS 235 (320)
Q Consensus 166 ~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~ 235 (320)
......|+... .-+|. .++...++++|.++|.++++++|+.-..|. .-.++...|.- -.+.|.
T Consensus 803 ---kTks~DALkkc----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 803 ---KTKSIDALKKC----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred ---chHHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11111122111 12222 788888999999999999999998654442 11222233322 566777
Q ss_pred HHhchhCCCCCCChhHhhhcc
Q 020914 236 SAACLVAPKSIISYPQVWRGQ 256 (320)
Q Consensus 236 ~al~~~~~~~~~~~~~~~~~~ 256 (320)
+.... .|.++..|...
T Consensus 876 ~c~~~-----EP~hG~~W~av 891 (913)
T KOG0495|consen 876 KCETA-----EPTHGELWQAV 891 (913)
T ss_pred HHhcc-----CCCCCcHHHHH
Confidence 77766 78888888743
No 97
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.43 E-value=4.4e-11 Score=98.55 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYF 79 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~ 79 (320)
.+..++..|..++..|+|++|++.|++++...|..+.+ .+.+|.+|.+.+++++|+..+++.++++|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56779999999999999999999999999999988644 5999999999999999999999999999876 56899
Q ss_pred HHHHHHHHccC------------------HHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914 80 RKGCILEAMEQ------------------YDDALSAFQTALQYNPQSAEVS---RKIKRVSQLAKDKKRAQEVENIRSNV 138 (320)
Q Consensus 80 ~lg~~~~~~~~------------------~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~ 138 (320)
.+|.++..+++ ..+|+..|++.++..|++..+- ..+..+...+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~------------- 177 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY------------- 177 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH-------------
Confidence 99998755541 3578899999999999886543 2222222211111
Q ss_pred HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh------hHHhhhcChhHHHHhhh
Q 020914 139 DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA------KVYFLLDKEKTDTEKYA 204 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------~~~~~lg~~~~A~~~~~ 204 (320)
....+..+..+|.+.-|...++..++.|+....... .+|..+|..++|.....
T Consensus 178 -------------e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 178 -------------ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred -------------HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 112345555566667788888888888876544322 27778888888766543
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.43 E-value=4.7e-13 Score=91.77 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=74.2
Q ss_pred HcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914 19 KAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~ 96 (320)
.+|+|+.|+..|+++++.+|. +...++.+|.||..+|+|++|+..+++ ++.+|.+...++.+|.|+..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 468999999999999999995 467788899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHH
Q 020914 97 AFQTA 101 (320)
Q Consensus 97 ~~~~a 101 (320)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 99
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.41 E-value=1.2e-11 Score=96.73 Aligned_cols=139 Identities=11% Similarity=0.109 Sum_probs=110.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCH
Q 020914 17 FFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQY 91 (320)
Q Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~ 91 (320)
++-...|..+...+...++.++.. +..++.+|.++...|++++|+..|++++.+.|+. +.+|.++|.++..+|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 444555777777776666666665 6778999999999999999999999999997763 46899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHH
Q 020914 92 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVET 171 (320)
Q Consensus 92 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 171 (320)
++|+..|++++.++|.....+..+|.++...|+.. ...|.+..+...
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~---------------------------------~~~g~~~~A~~~ 135 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQA---------------------------------IEQGDSEIAEAW 135 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHH---------------------------------HHcccHHHHHHH
Confidence 99999999999999999999999998887555322 124445556666
Q ss_pred HHHHHHhHhhccccChh
Q 020914 172 METAVKSWHETSKVDAK 188 (320)
Q Consensus 172 ~~~a~~~~~~~~~~~~~ 188 (320)
+++++..|.++....|.
T Consensus 136 ~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 136 FDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 77777777777666663
No 100
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.40 E-value=7e-11 Score=95.08 Aligned_cols=168 Identities=15% Similarity=0.220 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGY 78 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~ 78 (320)
..+..++..|..++..|+|.+|+..|++.+...|.. +.+.+.+|.++...|++++|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998876 6889999999999999999999999999999986 4689
Q ss_pred HHHHHHHHHcc-----------CHHHHHHHHHHHHhhCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914 79 FRKGCILEAME-----------QYDDALSAFQTALQYNPQSAEVSRK---IKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (320)
Q Consensus 79 ~~lg~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 144 (320)
+.+|.+++.+. ...+|+..|+..++..|++..+-.. +..+...+..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~-------------------- 142 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE-------------------- 142 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH--------------------
Confidence 99999987654 3458999999999999998655432 2222111111
Q ss_pred HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh------hHHhhhcChhH
Q 020914 145 DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA------KVYFLLDKEKT 198 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------~~~~~lg~~~~ 198 (320)
-....+..+..+|.+.-|...++..++.|+....... .+|..+|....
T Consensus 143 ------~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 143 ------HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp ------HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 1112355666677777777888877777776443322 26666666553
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.39 E-value=1e-12 Score=110.78 Aligned_cols=261 Identities=12% Similarity=0.086 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP------QWE 75 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~ 75 (320)
..+.++|+.|+..++|++|+++-..-|.+ .-..+.+.-++|.++..+|.|++|+.++.+-|.+.. ...
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~ 135 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES 135 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence 35778999999999999999986655433 122356778999999999999999999988877643 246
Q ss_pred HHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 020914 76 KGYFRKGCILEAMEQ--------------------YDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~ 129 (320)
.++|++|.+|...|+ ++.|++.|..-|++.... ..++-+||..+..+|+++.|+
T Consensus 136 RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai 215 (639)
T KOG1130|consen 136 RALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAI 215 (639)
T ss_pred HHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHH
Confidence 799999999998764 334555555555553332 236778888999999999998
Q ss_pred HHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---------hHHhhhcChhHHH
Q 020914 130 EVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---------KVYFLLDKEKTDT 200 (320)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---------~~~~~lg~~~~A~ 200 (320)
..-+.+..+.....-..........+|+++...|.+..|.+.|..++..-.+...-.. +.|..+.++++||
T Consensus 216 ~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI 295 (639)
T KOG1130|consen 216 HFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAI 295 (639)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8755444333332223334456677888888888877777777765433222111111 1777788899999
Q ss_pred HhhhhhhccccCc-------CCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCC-hhHhhhcccccccccCcccc
Q 020914 201 EKYAPIVNVDKAF-------ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIIS-YPQVWRGQGLRKWRHSQQDG 268 (320)
Q Consensus 201 ~~~~~a~~~~~~~-------~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 268 (320)
.++.+-+.|.... ...|.+|..|..++.. |+..-++.+.+.....++. -..+-.|+...-..+|+.+.
T Consensus 296 ~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 296 TYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 9999888776443 3356688888888876 6666666665543333333 23445555555566666554
No 102
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.38 E-value=2.5e-12 Score=83.55 Aligned_cols=64 Identities=25% Similarity=0.438 Sum_probs=40.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 46 NRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 46 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566666666666666666666666666666666666666666666666666666666666553
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=1.4e-10 Score=92.17 Aligned_cols=121 Identities=14% Similarity=0.135 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.+.+.....|..+-..|++++|+++|+..++-+|.+...+-..-.+...+|+.-+||+.+...++.++++.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33444444555555555666666666666666666555555555555555555556666666666666666666666666
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
+|...|+|++|.-+++..+-+.|.++-.+..++.++..+|-
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 66666666666666666666666666555555555554443
No 104
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.7e-11 Score=102.34 Aligned_cols=257 Identities=9% Similarity=0.005 Sum_probs=182.6
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH--------------
Q 020914 14 GNEFFKAGN--YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG-------------- 77 (320)
Q Consensus 14 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-------------- 77 (320)
+......++ +.-+..++-.-...-|++...+..+|.|+...|++.+|+.-|+++..+||.+..+
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence 334444444 4455556666677889999999999999999999999999999999999987654
Q ss_pred --------------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020914 78 --------------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN 137 (320)
Q Consensus 78 --------------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 137 (320)
|+.-|.+++..+++..|+..-+|++..+|.+.+++..-|.++...++.++|.-.+
T Consensus 283 e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF----- 357 (564)
T KOG1174|consen 283 EQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF----- 357 (564)
T ss_pred hhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH-----
Confidence 4444555666788889999999999999999999999999999999999885332
Q ss_pred hHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc---ccCh-h-HHhhhcChhHHHHhhhhhhccccC
Q 020914 138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDA-K-VYFLLDKEKTDTEKYAPIVNVDKA 212 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~-~-~~~~lg~~~~A~~~~~~a~~~~~~ 212 (320)
..+..+.+.+.+++..+-..|...+.+.+|.-.-..++..+.... ++-. . ++..----++|...+++++.+.|.
T Consensus 358 -R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 358 -RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred -HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 333344444555555555556666666666666665555554322 1111 1 122222357899999999999998
Q ss_pred cCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccc
Q 020914 213 FESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW 282 (320)
Q Consensus 213 ~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 282 (320)
+...-. .+.....-|++ ++...++++...++ .....-+|.++...+.++++++.|..++..+|.
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 754433 55566666777 99999999965222 233556678888888888888888765554443
No 105
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.8e-11 Score=100.28 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK---LNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~ 78 (320)
.+|++++.|..+|.+|+.+|++..|...|.+|+++.|++++.+..+|.++..+.+ -.++...+++++.+||.++.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 4788999999999999999999999999999999999999999999998887754 4688899999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
+.+|..++..|+|.+|+..+++.++..|.+..-..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999998887765443
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.36 E-value=3.6e-11 Score=99.73 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHH
Q 020914 6 EEMSLKDKGNEF-FKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGY 78 (320)
Q Consensus 6 ~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~ 78 (320)
+...++..|..+ +..|+|++|+..|++.+...|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 357788888887 66899999999999999999998 589999999999999999999999999999887 57899
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
+.+|.++..+|++++|+..|+++++..|+...+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 99999999999999999999999999999886543
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=2.9e-11 Score=106.37 Aligned_cols=166 Identities=17% Similarity=0.079 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----hcCCCCHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTI----SLNPQWEKGYFRKG 82 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~lg 82 (320)
.+..+..|..+...|++++|+..++++++.+|++..++.. +..+..+|.+..+.....+++ ..+|....++..+|
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 3455566777777777777777777777777777666554 444444444333333333333 45566666667777
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (320)
.++...|++++|+..++++++++|+++.++..+|.++...|++++|+.... ..+...+.........+..++..+...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~--~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME--SWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH--hhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 788888888888888888888888888888888888888888888876642 222211111111122233445555555
Q ss_pred hHHHHHHHHHHHH
Q 020914 163 HVFSFVVETMETA 175 (320)
Q Consensus 163 ~~~~~a~~~~~~a 175 (320)
|.++.+...++++
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 108
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.36 E-value=1.5e-11 Score=96.45 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
|..+.+++.+|.++...|++++|+.+|++++++.|+. +.+++.+|.++..+|++++|+..|++++...|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3557789999999999999999999999999987764 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh
Q 020914 115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 188 (320)
+|.++...|+...+. +....++..+++|.+.+.++...+|.
T Consensus 112 lg~~~~~~g~~~~a~---------------------------------~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 112 IAVIYHKRGEKAEEA---------------------------------GDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHcCChHhHh---------------------------------hCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 998887776665552 22334556667777777777776665
No 109
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.36 E-value=4.1e-12 Score=82.52 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 75 (320)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999875
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=4.7e-11 Score=111.65 Aligned_cols=143 Identities=6% Similarity=-0.058 Sum_probs=124.9
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.-.|+++.++.++|.+...+|.+++|...++.++++.|++..++..++.++.+++++++|+..+++++..+|+++.++..
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 44788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc
Q 020914 115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS 183 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 183 (320)
+|.++..+|++++|++.+. ..+. ..+....+...+|..+...|..+.|...|++|+.......
T Consensus 160 ~a~~l~~~g~~~~A~~~y~--~~~~----~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFE--RLSR----QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHhcchHHHHHHHH--HHHh----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 9999999999999988864 2222 1223455666778888888888888888888887766544
No 111
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=8.4e-12 Score=101.55 Aligned_cols=100 Identities=14% Similarity=0.242 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
+-+-.-|.-....++|++|+..|.+||+++|.++-.|.+++.+|.++|.++.|++.++.||.++|.+..+|..||.++..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 45666788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHh
Q 020914 122 AKDKKRAQEVENIRSNVDMVQH 143 (320)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~ 143 (320)
+|++.+|++.+ ++.++..+.
T Consensus 162 ~gk~~~A~~ay--kKaLeldP~ 181 (304)
T KOG0553|consen 162 LGKYEEAIEAY--KKALELDPD 181 (304)
T ss_pred cCcHHHHHHHH--HhhhccCCC
Confidence 99999998773 455544433
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.1e-10 Score=90.16 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 89 (320)
+-....+.+..|+.+-|..|+++.-...|.+..+-...|..+...|+|++|+++|+..|+-||.+..++-..--+...+|
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC
Confidence 34455667788999999999999888889999999999999999999999999999999999999999999888999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHH
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVV 169 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 169 (320)
+.-+||+.+...++..+.+.++|..++.+|...|++.+|.=.+ +...-..|..+.....++++.+..|. .
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl------EE~ll~~P~n~l~f~rlae~~Yt~gg----~ 204 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL------EELLLIQPFNPLYFQRLAEVLYTQGG----A 204 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH------HHHHHcCCCcHHHHHHHHHHHHHHhh----H
Confidence 9999999999999999999999999999999999999994332 22222334444455555555554442 2
Q ss_pred HHHHHHHHhHhhccccCh
Q 020914 170 ETMETAVKSWHETSKVDA 187 (320)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~ 187 (320)
..++-+.+.|.+++++.|
T Consensus 205 eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 205 ENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHHHhCh
Confidence 223333444444444444
No 113
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.5e-10 Score=92.84 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 77 (320)
.|...++.+.+|+.+...|+.+.||..-+..++ .|+. ..+...+|.-|...|-++.|...|...+....--..+
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A 143 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA 143 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH
Confidence 456667777777777777777777777655443 4443 3566777777777777777777776666544444566
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS 152 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 152 (320)
.-.+-.+|....++++|++.-++.+++.|.. +..+..++.......+.++|.... ..+...++......
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l------~kAlqa~~~cvRAs 217 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL------KKALQADKKCVRAS 217 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH------HHHHhhCccceehh
Confidence 6777777777777777777777777776654 334556666666666666664432 22222333344445
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHhHhhccc----cChhHHhhhcChhHHHHhhhhhhccccCc
Q 020914 153 EKYGAEECWKHVFSFVVETMETAVKSWHETSK----VDAKVYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~----~~~~~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
..+|++....|.+..+.+.++.+.+.-+..+. ....+|..+|+..+.+..+.++.+..+..
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 55677777777777777777666654443221 11227778888888888877777766543
No 114
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=6.4e-11 Score=104.16 Aligned_cols=203 Identities=15% Similarity=0.014 Sum_probs=155.4
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
..|+.+.++..+|..+...|+.+.|...+.++....|.+ .+.....|.++...|++++|+..++++++.+|++..++
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 368999999999999999999999999999999887755 56788889999999999999999999999999999888
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhh
Q 020914 79 FRKGCILEAMEQYDDALSAFQTAL----QYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK 154 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (320)
.. +..+..+|++..+.....+++ ..+|....+...+|.++...|++++|+... +..+... +........
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~--~~al~~~----p~~~~~~~~ 153 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAA--RRALELN----PDDAWAVHA 153 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHH--HHHHhhC----CCCcHHHHH
Confidence 76 666666665554444444444 567777788888999999999999997764 2333322 222445556
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHhHhhcccc-------ChhHHhhhcChhHHHHhhhhhhcccc
Q 020914 155 YGAEECWKHVFSFVVETMETAVKSWHETSKV-------DAKVYFLLDKEKTDTEKYAPIVNVDK 211 (320)
Q Consensus 155 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------~~~~~~~lg~~~~A~~~~~~a~~~~~ 211 (320)
++.++...|.++.+...+++++..++..... ...++...|++++|+..|++++...|
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 6777777777788888877777665432111 11277888999999999999977665
No 115
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=3.9e-10 Score=101.95 Aligned_cols=197 Identities=15% Similarity=0.181 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhcCC--------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-----KLNKALADAETTISLNP-------- 72 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~p-------- 72 (320)
....+-.+|.+++..|++++|...|...|..||++...+..+..+..... +.+.-.+.|++.-...|
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl 116 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL 116 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh
Confidence 34456677888888888888888888888888888777777777762222 12222222222211110
Q ss_pred -----------------------------------------------------------------------CC----HHH
Q 020914 73 -----------------------------------------------------------------------QW----EKG 77 (320)
Q Consensus 73 -----------------------------------------------------------------------~~----~~~ 77 (320)
+. ..+
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWT 196 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHH
Confidence 00 134
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcc
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGA 157 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (320)
++.+|+.|-..|++++|+++.++|+...|+.++.+...|.++...|++.+|.+.......++..... +......
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy------iNsK~aK 270 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY------INSKCAK 270 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH------HHHHHHH
Confidence 6888999999999999999999999999999999999999999999999997665444444433222 2222223
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------------HHhhhcChhHHHHhhhhhhccccCc
Q 020914 158 EECWKHVFSFVVETMETAVKSWHETSKVDAK-----------------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 158 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------------~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
.....|.++.|..... .|.+... +|. +|...|++..|+..|..+.++-...
T Consensus 271 y~LRa~~~e~A~~~~~----~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTAS----LFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHCCCHHHHHHHHH----hhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444332 2333221 221 8889999999999998888764433
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.28 E-value=1.3e-11 Score=114.05 Aligned_cols=197 Identities=11% Similarity=0.047 Sum_probs=145.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI 134 (320)
Q Consensus 55 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 134 (320)
.+...|+..|-++++++|..+.+|-.+|.+|...-+...|.++|++|.+++|++..++...+..+.....++.|.++...
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999766210
Q ss_pred hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcC
Q 020914 135 RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFE 214 (320)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~ 214 (320)
..+.++ ...+...|.... -.|..-++...|+..++.++.++|.+.
T Consensus 552 --~~qka~-----------------------------a~~~k~nW~~rG----~yyLea~n~h~aV~~fQsALR~dPkD~ 596 (1238)
T KOG1127|consen 552 --AAQKAP-----------------------------AFACKENWVQRG----PYYLEAHNLHGAVCEFQSALRTDPKDY 596 (1238)
T ss_pred --Hhhhch-----------------------------HHHHHhhhhhcc----ccccCccchhhHHHHHHHHhcCCchhH
Confidence 000000 001112222211 155577888889999999999999888
Q ss_pred Cccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccccccccccccccccc
Q 020914 215 SPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKG 291 (320)
Q Consensus 215 ~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
..|. +|.+|...|+| |++.|.||..+ +|..--+-+-.+.....+|+|+++...++.-+.....+.|..++.+
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kAs~L-----rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKASLL-----RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhhHhc-----CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 7887 89999999998 99999999988 6655333333455567788888887766553333333344444433
No 117
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.27 E-value=3.4e-10 Score=87.89 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=105.0
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+....+.-++.+|..|-..|=+.-|.-.|.+++.+.|.-+.++..+|.-+...|+++.|.+.|+..+++||.+.-++.++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
|..+.--|+|+-|.+.+.+-..-+|++|--
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 999999999999999999999999999753
No 118
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.9e-10 Score=104.10 Aligned_cols=126 Identities=19% Similarity=0.136 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
..|...|..+...++-++|..|+.++-.++|..+..|+..|.++...|++.+|.+.|..|+.++|+++.+...+|.++..
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 88 MEQYDDALS--AFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 88 ~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
.|+..-|.. .+..+++++|.++++|+.+|.+....|+.++|-+.+.
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999888888 9999999999999999999999999999999966643
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.22 E-value=6.6e-11 Score=106.44 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
.++.+...+|...+..++|+++..+++.+++++|-....|+.+|.|..++++++.|..+|.+++.++|++..+|.+++.+
T Consensus 483 ~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 483 ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 45566777777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
|..+++-.+|...+++|++.+-++...|.+...+....|.+++|+..+.
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987754
No 120
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=4.9e-10 Score=77.86 Aligned_cols=90 Identities=19% Similarity=0.307 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
+++.+|.++...|++++|+..++++++..|++..+++.+|.++...+++++|++.|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020914 123 KDKKRAQEVE 132 (320)
Q Consensus 123 ~~~~~A~~~~ 132 (320)
|+++.|....
T Consensus 82 ~~~~~a~~~~ 91 (100)
T cd00189 82 GKYEEALEAY 91 (100)
T ss_pred HhHHHHHHHH
Confidence 9999986653
No 121
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.20 E-value=3.3e-10 Score=108.35 Aligned_cols=251 Identities=8% Similarity=-0.091 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGC 83 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 83 (320)
+...|..+...|...|++++|+..|++..+.. ..+...+..+..++.+.|++++|.+.+..+++.. +.+..++..+..
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 34455666666666666666666666655432 1134556666666666666666666666666554 345556666666
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
.|.+.|++++|.+.|++..+ .+..+|..+...+...|+.++|+++..........++ ...+..+-......|
T Consensus 369 ~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~~g 440 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCC
Confidence 66677777777777766543 2455666677777777777777666432111111111 111222233334455
Q ss_pred HHHHHHHHHHHHHHhHhhccccChh---------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHH
Q 020914 164 VFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADD 232 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~~---------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~ 232 (320)
..+.+...++...+.+ .+.|. .+...|+.++|.+.++..- ..|+......+...+...+++ |..
T Consensus 441 ~~~~a~~~f~~m~~~~----g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 441 LSEQGWEIFQSMSENH----RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cHHHHHHHHHHHHHhc----CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 5666666666544322 22232 6777888888888877642 334332211233344455555 888
Q ss_pred HHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcc
Q 020914 233 SFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFE 274 (320)
Q Consensus 233 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 274 (320)
.+++.+.+ .|.....|..+.+.|.+.|+.+++..-++
T Consensus 516 ~~~~l~~~-----~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 516 AAEKLYGM-----GPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHHhCC-----CCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 88888877 44444557777788888898888765443
No 122
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.1e-08 Score=86.52 Aligned_cols=263 Identities=10% Similarity=-0.023 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-WEKGYFRKGCIL 85 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~ 85 (320)
+......|..-+..|+|.+|.....++-+..+.-.-++..-+.+-.++|+.+.|-.++.++-+..++ .-.....++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4455667888889999999999999998888877888888999999999999999999999999554 466788899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHH------------------
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV------DMV------------------ 141 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~------------------ 141 (320)
...|+++.|.....++++..|.++.+......++...|.+.....+....... +..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999887664311100 000
Q ss_pred ------------HhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcc
Q 020914 142 ------------QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNV 209 (320)
Q Consensus 142 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~ 209 (320)
+......+++...+..-....|..+.|.+..+++++.-.+.--...--....++...-++..++.+..
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 00000112222223333344445555555555554322211100000223446777777888888888
Q ss_pred ccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 210 DKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 210 ~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
.|+..+.+. +|..+...+.+ |...|+.|++..+. ...|..+|.++-.+|+...+-...++
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s------~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS------ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC------hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 888776665 99999999999 99999999976322 34477788888888888776544444
No 123
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.20 E-value=1.1e-09 Score=78.08 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKG 82 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg 82 (320)
...+-..|..+...|+.+.|++.|.++|.+-|..+.+|.+++.++..+|+.++|++.+++++++.-+. -.++.++|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 45677789999999999999999999999999999999999999999999999999999999996543 36799999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
.+|..+|+-+.|...|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999998875443
No 124
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.20 E-value=7.4e-10 Score=80.19 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRK 81 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 81 (320)
.++++.|..+-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999875544 578999999999999999999999999999888 78888889
Q ss_pred HHHHHHccCHHHHHHHHHHHHh
Q 020914 82 GCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~ 103 (320)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999887775
No 125
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.19 E-value=1.4e-09 Score=79.96 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGY 78 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~ 78 (320)
..+..++..|...+..|+|++|++.|+......|.. ..+...+|.+|+..+++++|+..+++-|+++|.++ -++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 346789999999999999999999999999887764 68999999999999999999999999999999874 589
Q ss_pred HHHHHHHHHccC---------------HHHHHHHHHHHHhhCCCCHHHH
Q 020914 79 FRKGCILEAMEQ---------------YDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 79 ~~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~ 112 (320)
+.+|.+++.+.. ..+|...|++.++..|++..+-
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 999999999877 8899999999999999987653
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.19 E-value=2.6e-10 Score=99.61 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=85.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
+...|...+..|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..+++++.++|+++.++..+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 020914 124 DKKRAQEVE 132 (320)
Q Consensus 124 ~~~~A~~~~ 132 (320)
++++|+..+
T Consensus 85 ~~~eA~~~~ 93 (356)
T PLN03088 85 EYQTAKAAL 93 (356)
T ss_pred CHHHHHHHH
Confidence 999997764
No 127
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.18 E-value=2.4e-09 Score=104.92 Aligned_cols=250 Identities=14% Similarity=0.021 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS----LNPQWEKGYFR 80 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~~~~~~~ 80 (320)
...|..+...|.+.|++++|+..|.+..+. .| +...|..+...|.+.|++++|.+.|++... +.|+ ...|..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 344555555555666666666666555432 23 345555666666666666666666665543 2332 345555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (320)
+-.+|.+.|++++|.+.|+.+.+.+ +.+..+|..+...+...|++++|..++.........+. ...+..+...+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~ 659 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHH
Confidence 5556666666666666666666554 34455566666666666666666555332111100000 11222233334
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhcc--ccCcCCccchhhHHHHhhHH-
Q 020914 160 CWKHVFSFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNV--DKAFESPHTHGSCFQFLRQY- 229 (320)
Q Consensus 160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~--~~~~~~~~~~g~~~~~~~~~- 229 (320)
...|.++.+...+++..+. ....+.. +|...|+.++|.+.|+.+... .|+......+-..|...+++
T Consensus 660 ~k~G~~eeA~~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 4444455555555443321 1111111 666667777777777666542 34333222244455555666
Q ss_pred -HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914 230 -ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 230 -A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (320)
|++.|++........+ ..+|..+-..+.+.|+.+.+.
T Consensus 737 eAlelf~eM~~~Gi~Pd----~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPN----TITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHH
Confidence 7777766654321111 233444444555555555544
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.17 E-value=1.3e-10 Score=76.08 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=39.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 445666666666666666666666666666666666666666666666666666665555554443
No 129
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.16 E-value=2.7e-10 Score=75.74 Aligned_cols=66 Identities=20% Similarity=0.392 Sum_probs=40.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 48 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
..+|...+++++|+.++++++.++|+++..|..+|.++..+|++++|++.|+++++..|+++.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 345556666666666666666666666666666666666666666666666666666665555443
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.16 E-value=9e-10 Score=83.77 Aligned_cols=127 Identities=22% Similarity=0.183 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGY 78 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~ 78 (320)
..+...+......+..++...+...+++.+.-+|+. ..+...+|.++...|++++|+..|+.++...|+. +.+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 345667777778888999999999999999999988 5778889999999999999999999999987765 4688
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+++|.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|...+
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999999999999999966 4445556778889999999999999998765
No 131
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.4e-10 Score=91.20 Aligned_cols=100 Identities=27% Similarity=0.420 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..+..+...|+.++...+|..|+.+|.+||.++|..+..|.+++.|++++.+++.+.....++++++|+.+.+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhh
Q 020914 85 LEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~ 104 (320)
......|++|+..++++..+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 99999999999999999766
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.15 E-value=1.9e-09 Score=98.14 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhc--C
Q 020914 5 AEEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--------KLNKALADAETTISL--N 71 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~l--~ 71 (320)
..+..++.+|..++..++ +..|+.+|++|++++|+++.++-.++.++.... +..++....++++.+ +
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 467788899999887765 889999999999999999999999999886652 345667777777764 7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 72 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
|..+.+|..+|..+...|++++|...+++|+.++| +..+|..+|.++...|+.++|++.+.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88889999999999999999999999999999999 58899999999999999999987753
No 133
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.15 E-value=3e-09 Score=104.21 Aligned_cols=252 Identities=10% Similarity=-0.017 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCI 84 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~ 84 (320)
..+..+-..+.+.|++++|...|+++.+... .+...|..+...|.+.|++++|+..|++..+. .| +...|..+...
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI~a 551 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 3444555556666666666666666655432 14566666666666666666666666666543 23 34556666666
Q ss_pred HHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914 85 LEAMEQYDDALSAFQTALQY----NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (320)
|.+.|++++|.+.|++.... .| +..++..+...+...|++++|.+++......... .....+..+...+.
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~-----p~~~tynsLI~ay~ 625 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIK-----GTPEVYTIAVNSCS 625 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-----CChHHHHHHHHHHH
Confidence 66666666666666666542 23 2455555656666666666666554321111100 01123333444455
Q ss_pred hhhHHHHHHHHHHHHHHhHhhccccChh---------HHhhhcChhHHHHhhhhhhccc--cCcCCccchhhHHHHhhHH
Q 020914 161 WKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEKYAPIVNVD--KAFESPHTHGSCFQFLRQY 229 (320)
Q Consensus 161 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~---------~~~~lg~~~~A~~~~~~a~~~~--~~~~~~~~~g~~~~~~~~~ 229 (320)
..|.++.|...+++.... . +.|+ .+...|+.++|.+.++.+.+.+ |+......+..+|...+++
T Consensus 626 k~G~~deAl~lf~eM~~~---G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKK---G--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred hcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 556666666666654321 1 2222 6777899999999999888754 4333333466677778887
Q ss_pred --HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 230 --ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 230 --A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
|++.|++....... | ...+|..+...+.+.|+.++++.-+.+
T Consensus 701 eeA~~lf~eM~~~g~~---P-dvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 701 KKALELYEDIKSIKLR---P-TVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999988654222 2 256688888889999999888766554
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.14 E-value=4.1e-09 Score=80.12 Aligned_cols=94 Identities=23% Similarity=0.248 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
..+.+.+|.+++..|++++|+..|++++...|+. +.+...+|.++...|++++|+..++. +.-.+-.+.++..+|+
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 3444455555555555555555555555444332 23444455555555555555555533 1222223344444555
Q ss_pred HHHHccCHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTA 101 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~a 101 (320)
+|...|++++|+..|++|
T Consensus 127 i~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHCCCHHHHHHHHHHh
Confidence 555555555555555544
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=9.9e-10 Score=99.05 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH----------------------------HHHHHccCHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRA----------------------------AAFLHLVKLN 58 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg----------------------------~~~~~~g~~~ 58 (320)
...|-....+|...|+..+|.....+-++ .|.++..|..+| ......++|+
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs 502 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFS 502 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHH
Confidence 44566677778888888888888777777 444444444443 3344567899
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 59 KALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 59 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
++..+++..++++|-....|+.+|.+..++++++.|.++|.+++.++|++.++|++++..+...++..+|...
T Consensus 503 ~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 503 EADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred HHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988888443
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.14 E-value=1.1e-09 Score=80.26 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRK 114 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 114 (320)
+..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999886 5799999999999999999999999999999886 678999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020914 115 IKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~ 132 (320)
+|.++...+++++|....
T Consensus 82 ~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATL 99 (119)
T ss_pred HHHHHHHhCChHHHHHHH
Confidence 999999999999987664
No 137
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.14 E-value=3.7e-10 Score=75.09 Aligned_cols=70 Identities=23% Similarity=0.430 Sum_probs=65.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
..+++..++|++|+.++++++.++|+++.++..+|.++..+|++++|+..++++++..|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999999999999988766654
No 138
>PRK11906 transcriptional regulator; Provisional
Probab=99.13 E-value=2.5e-09 Score=93.06 Aligned_cols=124 Identities=13% Similarity=-0.008 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCC
Q 020914 9 SLKDKGNEFFKAGN---YLKAAALYTQAI---KQDPSNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQ 73 (320)
Q Consensus 9 ~~~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~ 73 (320)
.++.+|...+..+. .+.|+.+|.+|+ +++|..+.+|..++.|+... ..-.+|...-++|++++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 55888888877764 568999999999 99999999999999999876 2346889999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++.++..+|.++...++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|.+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996553
No 139
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.13 E-value=2e-10 Score=75.18 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=61.6
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 51 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 117 (320)
+...|++++|+..|++++..+|++..+++.+|.+|...|++++|.+.+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999888776654
No 140
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.1e-09 Score=88.27 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME---QYDDALSAF 98 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~---~~~~A~~~~ 98 (320)
+.+.-+.-.+.-+..||++++-|..+|.+|..+|+++.|...|.+|+++.|++++.+..+|.+++... .-.++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46677788888899999999999999999999999999999999999999999999999999988764 456899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 99 QTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 99 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+++++.+|++..+...|+..+...|++.+|...
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~ 249 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAA 249 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999999999999999999765
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=4.5e-09 Score=91.09 Aligned_cols=155 Identities=13% Similarity=0.001 Sum_probs=127.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
+|....+++..+..++..|++++|...++..+...|+|+..+-..|+++...++.++|.+.+++++.++|+.+..+.++|
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcCh
Q 020914 117 RVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKE 196 (320)
Q Consensus 117 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~ 196 (320)
+.+...|++++|+.... ......+..+..+..+++.+...|+..++..-+. ..++..|++
T Consensus 382 ~all~~g~~~eai~~L~------~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~ 441 (484)
T COG4783 382 QALLKGGKPQEAIRILN------RYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRL 441 (484)
T ss_pred HHHHhcCChHHHHHHHH------HHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCH
Confidence 99999999999976642 2222223344555556666665555444433222 267789999
Q ss_pred hHHHHhhhhhhcccc
Q 020914 197 KTDTEKYAPIVNVDK 211 (320)
Q Consensus 197 ~~A~~~~~~a~~~~~ 211 (320)
++|+..+..+.+...
T Consensus 442 ~~A~~~l~~A~~~~~ 456 (484)
T COG4783 442 EQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999988887653
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.10 E-value=2e-09 Score=101.93 Aligned_cols=202 Identities=8% Similarity=-0.036 Sum_probs=156.5
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-----
Q 020914 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA----- 109 (320)
Q Consensus 35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----- 109 (320)
..+|.+..++..+...+...|++++|+..++.+++.+|+...+|+.+|.++.+.+++.+|... .++.+.+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 568999999999999999999999999999999999999999999999999999998887766 6777666665
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914 110 --------------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA 175 (320)
Q Consensus 110 --------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 175 (320)
.++..+|.+|..+|+.++|.+..+ .....++..+.+...++..+... +.+.|..++.+|
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~ye------r~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWE------RLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHH------HHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 899999999999999999977643 22333355666777777777766 777777777777
Q ss_pred HHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCcc---------chh------------hHHHHhhHH--HHH
Q 020914 176 VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPH---------THG------------SCFQFLRQY--ADD 232 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~---------~~g------------~~~~~~~~~--A~~ 232 (320)
+.. +....++..+.+...+.++.+|...... ..| .+|...+.| ++.
T Consensus 176 V~~-----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 176 IYR-----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHH-----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 654 4455677778888888888777653220 123 455566667 899
Q ss_pred HHHHHhchhCCCCCCChhHhhhccccccc
Q 020914 233 SFSSAACLVAPKSIISYPQVWRGQGLRKW 261 (320)
Q Consensus 233 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 261 (320)
.++.++++ +|...-+..+++.|+.
T Consensus 245 iLK~iL~~-----~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEH-----DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhc-----CCcchhhHHHHHHHHH
Confidence 99999988 4444556777777776
No 143
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.09 E-value=2.9e-10 Score=98.27 Aligned_cols=118 Identities=31% Similarity=0.518 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
+.-+-..++..+..+.|+.|+..|.+||+++|+.+..+-+++.++.+.+++..|+.++.+|++++|....+|+.+|.+.+
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
.++++.+|...|++...+.|+++.+...+..+.....+
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888765544
No 144
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.2e-09 Score=82.87 Aligned_cols=107 Identities=26% Similarity=0.387 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSN----------PTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
....+...|+-++..|+|++|...|..|+.. .|.. ...+.|.+.|+...|+|-++++....+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999743 3443 467899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
|..+|++..+|+.+|.++...-+..+|...|.++|+++|.-..+-
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999999999999999999999999999999876543
No 145
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.08 E-value=6.8e-10 Score=96.37 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+|+++.+|+++|.+|..+|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|++++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555533 555555555555555555555555554
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.07 E-value=2.8e-10 Score=77.92 Aligned_cols=78 Identities=14% Similarity=0.187 Sum_probs=70.3
Q ss_pred ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 54 LVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 54 ~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
.|+|++|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ ++.+|.+......+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 567788899999999999999999999 999999999999999999999999999876
Q ss_pred H
Q 020914 132 E 132 (320)
Q Consensus 132 ~ 132 (320)
+
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 4
No 147
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=3.2e-08 Score=87.56 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
.+++.--+.+...|+|++|++...+.+...|+++.+...--.+..++++|++|+...++-....-.+.. .+..+-|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHH
Confidence 456666677788899999999999999999999999998889999999999998554333222222221 2678888899
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hh-hHHH------------HhH---------
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIR-SN-VDMV------------QHL--------- 144 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~------------~~~--------- 144 (320)
+++.++|+.+++ .+++.+..+....+++...++++++|..++... ++ .+.. ..+
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 999999998888 556777777888888888899999988876522 11 0000 000
Q ss_pred --HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh------------------HHhhhcChhHHHHhhh
Q 020914 145 --DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------------------VYFLLDKEKTDTEKYA 204 (320)
Q Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~------------------~~~~lg~~~~A~~~~~ 204 (320)
....-+..++.+-.+...|.+..|++.+++|.....+.+..... ++..+|+..+|...|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 00011222333333455667777777777775544443321111 7777888888888888
Q ss_pred hhhccccCc
Q 020914 205 PIVNVDKAF 213 (320)
Q Consensus 205 ~a~~~~~~~ 213 (320)
..+..+|.+
T Consensus 249 ~~i~~~~~D 257 (652)
T KOG2376|consen 249 DIIKRNPAD 257 (652)
T ss_pred HHHHhcCCC
Confidence 887776654
No 148
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.06 E-value=1.1e-08 Score=83.17 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK 81 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 81 (320)
...|+.+..++..|+|.+|...|..-++..|+. +.+++.||.+++.+|+|+.|...|..+++-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 448999999999999999999999999999986 6999999999999999999999999999988865 6889999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
|.+...+|+.++|...|+++++..|+...+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999999999999998877643
No 149
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.05 E-value=1.3e-08 Score=73.70 Aligned_cols=92 Identities=18% Similarity=0.153 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC---CHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ---SAEVSRK 114 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~ 114 (320)
+.+++.+|.++..+|+.++|+..|++++...++. ..+++.+|.++..+|++++|+..+++++...|+ +..+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3678999999999999999999999999976543 679999999999999999999999999999898 7788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020914 115 IKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~ 132 (320)
++.++...|+.++|+...
T Consensus 81 ~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 888999999999997653
No 150
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.05 E-value=4.9e-09 Score=100.34 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C-----------
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q----------- 73 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~----------- 73 (320)
...+..+...|.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..|++.++..+ +
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 44555666667777777777777766532 2 455677777777777777777777777655322 1
Q ss_pred -----------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 -----------------------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 74 -----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
+..++..+...|.+.|++++|.+.|+.. .+.+..+|..+...+...|+.++|.+
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHH
Confidence 2223445566677777777777777654 34466677777777777777777776
Q ss_pred HHH
Q 020914 131 VEN 133 (320)
Q Consensus 131 ~~~ 133 (320)
++.
T Consensus 312 lf~ 314 (697)
T PLN03081 312 LYY 314 (697)
T ss_pred HHH
Confidence 643
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.05 E-value=9.9e-09 Score=89.62 Aligned_cols=114 Identities=18% Similarity=0.132 Sum_probs=106.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A 94 (320)
..+...++++.|++.+++..+.+|+ +...++.++...++..+|+..+.++++.+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 4445678999999999999988874 6677999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 95 LSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 95 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
++..++++.+.|++...|..|+.+|...|+++.|+..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999999755
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.04 E-value=4.5e-09 Score=89.15 Aligned_cols=180 Identities=17% Similarity=0.107 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--C----
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--S----NPTLFSNRAAAFLHLVKLNKALADAETTISLNP--Q---- 73 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~---- 73 (320)
-++.+...|+.|...|++++|..+|.++....- + -+..+...|.+|... ++++|+.+|++|+.+.- +
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 356677788888889999999999999976532 1 146778888887766 99999999999998732 2
Q ss_pred CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914 74 WEKGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 146 (320)
-..++..+|.+|... |++++|+++|++|+.+.... ..++..++.++...|++++|+++++... ...
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~--~~~----- 185 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA--KKC----- 185 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HTC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHh-----
Confidence 256788999999998 99999999999999873322 3456677777778888888876643100 000
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCc
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESP 216 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~ 216 (320)
+..... . ..+.+.+-.++ -++...|+...|.+.+++....+|.+...
T Consensus 186 --------l~~~l~---~-~~~~~~~l~a~-----------l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 186 --------LENNLL---K-YSAKEYFLKAI-----------LCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp --------CCHCTT---G-HHHHHHHHHHH-----------HHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred --------hccccc---c-hhHHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 000000 0 00111111111 16667788888888999988888876543
No 153
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.04 E-value=1.2e-09 Score=94.95 Aligned_cols=70 Identities=19% Similarity=0.170 Sum_probs=66.7
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTL---FSNRAAAFLHLVKLNKALADAETTISLN 71 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (320)
+.|+++.+++++|..++..|+|++|+..|++||+++|+++.+ |+++|.+|..+|+.++|+.++++|+++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468899999999999999999999999999999999999855 9999999999999999999999999983
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.04 E-value=1.2e-07 Score=76.37 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYF 79 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~ 79 (320)
.+..|++.|...++.|+|++|+..|++.....|.. ..+...++.++.+.+++++|+...++-+++.|.++ -+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988876 58899999999999999999999999999998764 5788
Q ss_pred HHHHHHHHc--------cCHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 020914 80 RKGCILEAM--------EQYDDALSAFQTALQYNPQSAEVSR---KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK 148 (320)
Q Consensus 80 ~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 148 (320)
.+|.+++.. .--.+|+..|+..+...|++..+-. .+..+...+...
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~----------------------- 169 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH----------------------- 169 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH-----------------------
Confidence 899987653 2345788999999999999865432 222222111111
Q ss_pred HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh------HHhhhcChhHHHHh
Q 020914 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK------VYFLLDKEKTDTEK 202 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~------~~~~lg~~~~A~~~ 202 (320)
....+..+..+|.+.-+...++..++.|++.-...+. +|..+|-.++|...
T Consensus 170 ---Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 170 ---EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ---HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 1223566666777777777777777777654433332 66667766666443
No 155
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.03 E-value=4.6e-09 Score=79.75 Aligned_cols=96 Identities=18% Similarity=0.334 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--
Q 020914 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-- 90 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~-- 90 (320)
|+.|.+.++.....+|.+++.+++=|.++..+.+ +++|+.-|+.||.++|+...+++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6889999999999999999999999999988855 4688999999999999999999999999988764
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 91 ---------YDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 91 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
|++|..+|++|+..+|++...+..|...
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7889999999999999998877666443
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=1.3e-08 Score=83.89 Aligned_cols=195 Identities=9% Similarity=-0.091 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHH
Q 020914 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG---YFRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVS 112 (320)
Q Consensus 39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 112 (320)
..+..++..|..+...|+|++|+..|++++...|..+.+ .+.+|.+|+.++++++|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 357889999999999999999999999999999988654 59999999999999999999999999999885 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhh
Q 020914 113 RKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFL 192 (320)
Q Consensus 113 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 192 (320)
+.+|.++...+.-.-. -................|...+++-++.|++..- .+.+-..
T Consensus 110 Y~~g~~~~~~~~~~~~----------------------~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-a~~A~~r 166 (243)
T PRK10866 110 YMRGLTNMALDDSALQ----------------------GFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-TTDATKR 166 (243)
T ss_pred HHHHHhhhhcchhhhh----------------------hccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-HHHHHHH
Confidence 6666554322210000 0000011111112223344555555555554321 1111111
Q ss_pred hcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914 193 LDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 193 lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (320)
+.....-+.. .....|..|...+.| |+..|+.+++..|... ..+++..-++.++..+|..+++-
T Consensus 167 l~~l~~~la~------------~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~--~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 167 LVFLKDRLAK------------YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ--ATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHHHHHHHH------------HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc--hHHHHHHHHHHHHHHcCChHHHH
Confidence 1111111100 012366777777888 8888888887654433 45777777788888888777653
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=99.01 E-value=1e-08 Score=89.34 Aligned_cols=109 Identities=9% Similarity=-0.027 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 3 AEAEEMSLKDKGNEFFKA---------GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.|..+.++..++.+++.. .+-.+|.+..++|++++|.++.++..+|.+....++++.|+..|++|+.++|+
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn 370 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD 370 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc
Confidence 356678888888887654 34578999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
.+.+|+..|.+....|+.++|++..+++++++|.-..+
T Consensus 371 ~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 371 IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999999976554
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.97 E-value=6.7e-10 Score=74.86 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+.++.++|.+|..+|++++|+.+|++++++. |..+.++.++|.++..+|++++|+++|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555555555555555555431 112345555666666666666666666665554
No 159
>PRK15331 chaperone protein SicA; Provisional
Probab=98.96 E-value=1.7e-08 Score=76.00 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=91.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
+.++.-+..+..|.-++..|++++|...|+-....+|.+++.|+.+|.|+..+++|++|+..|..|..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 44555688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020914 116 KRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 116 ~~~~~~~~~~~~A~~~~ 132 (320)
|.++..+|+...|...+
T Consensus 112 gqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 112 GQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 99999999999997654
No 160
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.95 E-value=2.3e-09 Score=72.18 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ----D---PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN 71 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (320)
|.-+..+.++|.++...|+|++|+.+|++++++ . |..+.++.++|.++..+|++++|++.+++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 677899999999999999999999999999965 2 2236789999999999999999999999999863
No 161
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.9e-08 Score=81.03 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=124.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
..+....+|+.|+..++-.+..+.+.. ..-..+|.|++++|+|++|+..|+-+.+.+.-+.+.+.+++.|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 456678899999999998887765543 6677799999999999999999999998777788999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHH
Q 020914 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETME 173 (320)
Q Consensus 94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 173 (320)
|...-.+| |+++-....+-.+-...++-++-..+ .+.+ .... +-...++.+...+..++.|+..|.
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~f---h~~L------qD~~-EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTF---HSSL------QDTL-EDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHH---HHHH------hhhH-HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 98766654 66665554444444444444333222 1111 1110 111223344444444444444444
Q ss_pred HHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc
Q 020914 174 TAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT 218 (320)
Q Consensus 174 ~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~ 218 (320)
..+..-++.+.++-. +|+.+.=++-+.+.+...+.--|++.....
T Consensus 176 rvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 176 RVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 444333333333322 788888888888888888877776654443
No 162
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.92 E-value=1.6e-07 Score=92.93 Aligned_cols=267 Identities=10% Similarity=-0.019 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------H
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E 75 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~ 75 (320)
......+|.++...|++++|...+++++...|.. ..+...+|.++...|++++|...+++++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3455567888999999999999999999865543 2456789999999999999999999999764321 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-HH
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-DE 146 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~ 146 (320)
.++..+|.++...|++++|...+++++.+... ...++..++.++...|++++|..... ......... ..
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~--~al~~~~~~~~~ 609 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR--KGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH--HhHHhhhccCch
Confidence 46778899999999999999999999987322 12345677888888899999976642 222221111 11
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---h-------hHHhhhcChhHHHHhhhhhhccccCcCC-
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---A-------KVYFLLDKEKTDTEKYAPIVNVDKAFES- 215 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~- 215 (320)
.........+.+....|....+...++++........... . ..+...|+.+.|...........+....
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 689 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF 689 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh
Confidence 1222334456666677777778777777766544321100 0 1334467777877776665542221110
Q ss_pred ----ccchhhHHHHhhHH--HHHHHHHHhchhCCCCCC-ChhHhhhcccccccccCcccchhhhccc
Q 020914 216 ----PHTHGSCFQFLRQY--ADDSFSSAACLVAPKSII-SYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 216 ----~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
....+.++...+++ |...+++++........+ .-..++..+|.+++..|+...+...+.+
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01256666777777 888999988764333222 2345677888889999988777655544
No 163
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=3e-08 Score=89.93 Aligned_cols=141 Identities=14% Similarity=0.155 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
.+++.+|..|...|++++|+.+.++||...|..++.|+..|.++.+.|++.+|.+.++.|-.+++.+..+-...+....+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhH--HHHhHHHH-HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhc
Q 020914 122 AKDKKRAQEVENIRSNVD--MVQHLDEF-KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHET 182 (320)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 182 (320)
.|+.++|+++.......+ ....+... ........|.++...|.+..|++.+......|.+-
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999988754332222 11222211 22333445788888888888888888888777653
No 164
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.4e-08 Score=85.07 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
..++.+++.++.+.++|.+|+....++|+++|+++.+++.+|.++..+|+|+.|+.+|+++++++|+|..+...+..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HccCHHHH-HHHHHHHHhhCC
Q 020914 87 AMEQYDDA-LSAFQTALQYNP 106 (320)
Q Consensus 87 ~~~~~~~A-~~~~~~al~~~p 106 (320)
+..++.+. .+.|.+++..-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 88777665 788888887654
No 165
>PLN03077 Protein ECB2; Provisional
Probab=98.89 E-value=3.9e-08 Score=96.39 Aligned_cols=258 Identities=10% Similarity=-0.070 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGC 83 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 83 (320)
...|..+...+.+.|++++|++.|++..+. .|+. ..+..+-.++...|++++|.+.++.+++... .+..++..+..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 345666777777778888888887766543 3443 3333333455566666666666666665432 24556667777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH--HHH------------
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE--FKS------------ 149 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~------------ 149 (320)
.|.+.|++++|.+.|++..+ .+..+|..+...+...|+.++|+.++..... ...++... ...
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 77777777777777776432 3455666666666667777777665432110 00000000 000
Q ss_pred ----------------HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh--hHHhhhcChhHHHHhhhhhhcc--
Q 020914 150 ----------------EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTDTEKYAPIVNV-- 209 (320)
Q Consensus 150 ----------------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--~~~~~lg~~~~A~~~~~~a~~~-- 209 (320)
.+...+-+.+...|.++.|...|+.. -++....+. ..|...|+.++|++.|++..+.
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00111122333334444444443331 000000000 1666778888888888877653
Q ss_pred ccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 210 DKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 210 ~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
.|+......+-..+...|.. |.+.|+...+...-.++ ...|..+...+.+.|+.+++..-+++
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~---~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN---LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45444333233334455666 77788777743222211 24466666777777777777665554
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.89 E-value=3.3e-08 Score=82.21 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=83.3
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHH
Q 020914 41 PTLFSNRAAAF-LHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSR 113 (320)
Q Consensus 41 ~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 113 (320)
...++..|..+ ...|+|++|+..|+..++..|+. +.+++.+|.+|+..|++++|+..|+++++..|++ ++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 47788888887 56799999999999999999998 5899999999999999999999999999998875 77899
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020914 114 KIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 114 ~l~~~~~~~~~~~~A~~~~ 132 (320)
.+|.++...|+.++|...+
T Consensus 222 klg~~~~~~g~~~~A~~~~ 240 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVY 240 (263)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 9999999999999997764
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.89 E-value=3e-08 Score=90.38 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=93.0
Q ss_pred chHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914 3 AEAEEMSLKDKGNEFFKA--------GNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 72 (320)
.|+.+.++-.++.++... ++...+.....+++.+ +|.++.++.-+|......|++++|...+++|+.++|
T Consensus 372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 577888888888877554 2345667777776664 788889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
+..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 452 -s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 452 -SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5889999999999999999999999999999999885
No 168
>PLN03077 Protein ECB2; Provisional
Probab=98.87 E-value=1e-07 Score=93.50 Aligned_cols=242 Identities=7% Similarity=-0.124 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHH-------
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWEKGY------- 78 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~------- 78 (320)
...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++.+.. .|+.....
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACA 500 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHh
Confidence 44667778889999999999999987543 35678888999999999999999999988753 44433221
Q ss_pred ---------------------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 79 ---------------------------FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 79 ---------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
..+-..|.+.|+.++|...|+.. +.+..+|..+...+...|+.++|+++
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 22336788889999999998876 66788999999999999999999887
Q ss_pred HHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---------HHhhhcChhHHHHh
Q 020914 132 ENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------VYFLLDKEKTDTEK 202 (320)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---------~~~~lg~~~~A~~~ 202 (320)
..........++.. .+..+-......|.++++...++...+.+ .+.|+ .+...|+.++|.+.
T Consensus 577 f~~M~~~g~~Pd~~-----T~~~ll~a~~~~g~v~ea~~~f~~M~~~~----gi~P~~~~y~~lv~~l~r~G~~~eA~~~ 647 (857)
T PLN03077 577 FNRMVESGVNPDEV-----TFISLLCACSRSGMVTQGLEYFHSMEEKY----SITPNLKHYACVVDLLGRAGKLTEAYNF 647 (857)
T ss_pred HHHHHHcCCCCCcc-----cHHHHHHHHhhcChHHHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 64322211111111 11112233444566777777777655333 23332 77788999999999
Q ss_pred hhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914 203 YAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 203 ~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (320)
++.. .+.|+......+-..+...+.. +....++.+++ .|+.+..+..+++.|...|+++++.
T Consensus 648 ~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-----~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 648 INKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-----DPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCcchHHHHHHHHHHCCChHHHH
Confidence 9876 3555532211111122333333 77778888888 5555666888888898899888764
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.86 E-value=1.2e-07 Score=76.43 Aligned_cols=126 Identities=17% Similarity=0.197 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccC-----------HHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVK-----------LNKALADAETTI 68 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al 68 (320)
+|-...+++.+|.+++..|++++|+..|++.++..|++ +.+++.+|.++..+.. ..+|+..|+..+
T Consensus 38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999987 4789999999776643 458999999999
Q ss_pred hcCCCCHHH-----------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHHHHHHHH
Q 020914 69 SLNPQWEKG-----------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 69 ~l~p~~~~~-----------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~A 128 (320)
+..|+...+ -+..|..|++.|.|..|+.-|+.+++..|+... ++..+...+..+|..+.+
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 999987432 355788899999999999999999999999854 567777777777777744
No 170
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.3e-08 Score=81.03 Aligned_cols=107 Identities=30% Similarity=0.496 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
..|..+...|+.++...+|..|+.+|.++|...-.+ +..|.|+|.|...+|+|..|+..+.+++.++|.+..++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 457788999999999999999999999999875443 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
=+.|++.+.++.+|....+..+.++-+...+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999999999999988876554443
No 171
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=7.6e-07 Score=77.24 Aligned_cols=257 Identities=11% Similarity=0.042 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
+...|..-|.--..++++..|...|++||..+..+..+|...+.+-++..+...|...+++|+.+-|.-.+.|+..--+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45567777888888999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (320)
..+|+...|.+.|++-++..|+ ..+|...-......+..+.|..+++..-. ..+. ...+..++......|.+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~--~HP~-----v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVL--VHPK-----VSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHhe--eccc-----HHHHHHHHHHHHhcCcH
Confidence 9999999999999999999995 56777777777888888888877542111 1111 12233455556666777
Q ss_pred HHHHHHHHHHHHhHhhccccChh------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH----H-----
Q 020914 166 SFVVETMETAVKSWHETSKVDAK------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY----A----- 230 (320)
Q Consensus 166 ~~a~~~~~~a~~~~~~~~~~~~~------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~----A----- 230 (320)
..+...|+.|++.+.+......- .-..+..++.|.-.|+-+++.-|..........+...-++| .
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 77778888877766552111000 11233556777777777777666543222222233333333 1
Q ss_pred ----HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 231 ----DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 231 ----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
.-.|++-+.. +|.+.++|+..-..-...|+.+...+-++.
T Consensus 304 v~KRk~qYE~~v~~-----np~nYDsWfdylrL~e~~g~~~~Ire~yEr 347 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSK-----NPYNYDSWFDYLRLEESVGDKDRIRETYER 347 (677)
T ss_pred hhhhhhHHHHHHHh-----CCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2246777766 888888998665544444554444333333
No 172
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=6.9e-07 Score=74.83 Aligned_cols=121 Identities=21% Similarity=0.187 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------------cCC----
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--------------LNP---- 72 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------l~p---- 72 (320)
.-+|.+++..|+|++|+..|+-+.+.+...++.+.++|.|++.+|.|.+|...-.++-+ ++.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 34589999999999999999999887777789999999999999998888766555422 111
Q ss_pred --------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 73 --------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 73 --------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+..+--..++.+++..-.|++|++.|++.|.-+|+....-..++.++..+..++-+.++
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 01122344555555666788888888888888777766666666666666555554443
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3.1e-07 Score=77.74 Aligned_cols=121 Identities=13% Similarity=-0.047 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+.+.....-.+++..++++.|.+.++.+-+.+.+..-....-|++....| ++++|.-.|+......|..+..+..+|.
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV 209 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 45566667788899999999999999988888766555555555555555 5899999999988888889999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 126 (320)
++..+|+|++|.+.+++++..+|.++++..++..+....|+..
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCCh
Confidence 9999999999999999999999999999999998888888773
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.76 E-value=9e-08 Score=83.71 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
++....++.++...++-.+|+..+.+++..+|.+..++...+..+...++++.|+...++++++.|++...|+.|+.+|.
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhh
Q 020914 87 AMEQYDDALSAFQTALQY 104 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~ 104 (320)
.+|++++|+..+..+--.
T Consensus 280 ~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 280 QLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHhcCcCC
Confidence 999999999777654433
No 175
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=1.4e-07 Score=77.09 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=120.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 020914 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSA 97 (320)
Q Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~ 97 (320)
.+..+|..||+++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|...+..+..++.++..+.+.+|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--H---hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHH
Q 020914 98 FQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN--I---RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETM 172 (320)
Q Consensus 98 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 172 (320)
...... ++..+... -+.+.|+...+ + +.-++..+ ...........|=.....|.++.+.+.|
T Consensus 101 ~~~~~D----~~~L~~~~-------lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 101 AFLLLD----NPALHSRV-------LQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcC----CHHHHHHH-------HHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHH
Confidence 765543 23322222 22233332211 0 00000000 0111222233344445556666666666
Q ss_pred HHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccc
Q 020914 173 ETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVD 210 (320)
Q Consensus 173 ~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~ 210 (320)
..|.+. .-..|. +++..+++..|++.....++.+
T Consensus 168 qaAlqv----sGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 168 QAALQV----SGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHhh----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 665542 122222 8888899999998887776543
No 176
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1.7e-06 Score=76.93 Aligned_cols=124 Identities=22% Similarity=0.237 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
.|+++.+++..-.++.+.++|++|+.. ++.++. +....+..+.|.+++++.++|+.+++ -+++.+..+..
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~ 114 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLE 114 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHH
Confidence 478888999999999999999999955 444442 12223789999999999999999998 56788888999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCC-------------------------------HHHHHHHHHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQS-------------------------------AEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------------------------------~~~~~~l~~~~~~~~~~~~A 128 (320)
..|++++++|+|++|...|+..++.+-++ .+..++.+-++...|++.+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA 194 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQA 194 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHH
Confidence 99999999999999999999986654332 34567788888889999999
Q ss_pred HHHHH
Q 020914 129 QEVEN 133 (320)
Q Consensus 129 ~~~~~ 133 (320)
+++..
T Consensus 195 ~elL~ 199 (652)
T KOG2376|consen 195 IELLE 199 (652)
T ss_pred HHHHH
Confidence 98864
No 177
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.71 E-value=4.4e-08 Score=81.45 Aligned_cols=221 Identities=6% Similarity=-0.047 Sum_probs=143.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
.-..|..|+++|+|++||+||.+++..+|.++-.+.+++.+|+++.+|..|...+..|+.++.....+|...+.....+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh--hhhHHHHHHHHHHHHHHhHhhccccCh--hHHhhhcChhHH
Q 020914 124 DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC--WKHVFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTD 199 (320)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~--~~~~~lg~~~~A 199 (320)
...+|.+-.+. ...+.+...++...+..+.. .......+..-+-.|...-.+.+.+.. ..+...|.++.+
T Consensus 180 ~~~EAKkD~E~------vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~ 253 (536)
T KOG4648|consen 180 NNMEAKKDCET------VLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVP 253 (536)
T ss_pred hHHHHHHhHHH------HHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccc
Confidence 98888654322 11121212221111111110 011111111001111111112221111 167777888888
Q ss_pred HHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 200 TEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
+.+|.+-................+.....| |+..-.+++.. .+.+-.+.-+.|.+.--+|...++...+++
T Consensus 254 i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~-----~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T 326 (536)
T KOG4648|consen 254 VVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNP-----KPTPMPDTSGPPKAETIAKTSKEVKPTKQT 326 (536)
T ss_pred eeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCC-----CCCcCcccCCCchhHHHHhhhhhcCcchhh
Confidence 888866655443333222234556666666 87777788766 555555566667666666666655544444
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.69 E-value=1.5e-06 Score=66.43 Aligned_cols=122 Identities=21% Similarity=0.241 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGC 83 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~ 83 (320)
....+.+|+.+...|++.+|...|++++. +.-.++..+..++.+.+..+++..|...+++..+-+|. .+.....+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34577899999999999999999999985 56678899999999999999999999999999999985 5788899999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
++...|++.+|...|+.++...|+ +.+....+..+..+|+.+++.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999999999885 566667788888888777774
No 179
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.69 E-value=3.3e-07 Score=69.77 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ----------YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|+.||.++|+...++..+|.++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999988754 4678999999999999999999999999887664
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.61 E-value=1.1e-07 Score=56.01 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
.+++.+|.+|..+|++++|++.|+++++.+|+++.+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555555555555555555555555555555555555544
No 181
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.61 E-value=2.3e-08 Score=83.00 Aligned_cols=100 Identities=28% Similarity=0.447 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
......+...+..|.+++|++.|..+|+++|..+..|..+|.+++++++...|+..|..++.++|+....|-.+|.+...
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 34455667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCC
Q 020914 88 MEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~ 107 (320)
+|++++|..++..+.+++-+
T Consensus 195 lg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred hhchHHHHHHHHHHHhcccc
Confidence 99999999999999998643
No 182
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.61 E-value=4.1e-05 Score=65.33 Aligned_cols=241 Identities=11% Similarity=0.072 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..-++..-+...-..|+++.|-.+..++-+..++ .-.....++......|+++.|.....+++...|.++.+....-.+
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~ 196 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA 196 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 3456666777888899999999999999998444 356788899999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH---HH--HHHHHHHHHHHHHHHHH----hhhhHHHHhHHHHHHHHhhhh
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI---KR--VSQLAKDKKRAQEVENI----RSNVDMVQHLDEFKSEMSEKY 155 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---~~--~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 155 (320)
|...|++.+......+.-+-.--+.+-...+ +. +....++-..+..+... .......+.+......-+...
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 9999999998888777666433222111110 00 00001111111111000 000111111111111111111
Q ss_pred cchhhhhhHHHHHH--------------------HHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhc
Q 020914 156 GAEECWKHVFSFVV--------------------ETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVN 208 (320)
Q Consensus 156 ~~~~~~~~~~~~a~--------------------~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~ 208 (320)
|.-..+...+..++ ....++++.+-+-..-+|. .+...+.+.+|..+++.++.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~ 356 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK 356 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 11111111111111 1122333334344444444 55666779999999999999
Q ss_pred cccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCC
Q 020914 209 VDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (320)
Q Consensus 209 ~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~ 246 (320)
..|+.......|.++..+++- |-..++.++.+..+.+.
T Consensus 357 ~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 357 LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 999887777799999999986 99999999966544443
No 183
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=3.7e-06 Score=83.29 Aligned_cols=239 Identities=11% Similarity=-0.005 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------- 73 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------- 73 (320)
..++..+|.++...|++++|...+.+++...... ..++..+|.++...|++++|...+++++.+...
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 4466788999999999999999999999763321 356788999999999999999999999886321
Q ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-HH
Q 020914 74 -WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-----SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-DE 146 (320)
Q Consensus 74 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~ 146 (320)
...++..+|.++...|++++|...+++++.+... ...++..++.+....|+++.|.........+...... ..
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 2344667899999999999999999999886432 2445666888888899999887654221111000000 00
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhc-------cccChhHHhhhcChhHHHHhhhhhhccccCcCC----
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHET-------SKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES---- 215 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~---- 215 (320)
............+...|....+.............. ......++...|++.+|...+++++........
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 000000000001111222222222222111000000 000111677889999999999998876433211
Q ss_pred ---ccchhhHHHHhhHH--HHHHHHHHhchhCCCC
Q 020914 216 ---PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (320)
Q Consensus 216 ---~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~ 245 (320)
....|.++...|+. |...+.+|+.+..+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 11256777777887 9999999998865544
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.60 E-value=3.7e-07 Score=77.50 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCC--C--
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP--S----NPTLFSNRAAAFLHL-VKLNKALADAETTISLNPQ--W-- 74 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~--~-- 74 (320)
.+..+...|.++. .+++++|+.+|++|+++.- . -+.++..+|.+|... |++++|++.|++|+.+... .
T Consensus 74 Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 74 AAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 3455566566654 4499999999999998621 1 257899999999999 9999999999999998432 2
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----H---HHHHHHHHHHHHHHHHHHHHHHH
Q 020914 75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----A---EVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~---~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
..++...|.++..+|+|++|++.|++.....-++ . ..+...+.++...|+...|....
T Consensus 153 ~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578899999999999999999999998864322 1 23455667777778877775543
No 185
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.59 E-value=1.3e-07 Score=55.71 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
.++..+|.+|..+|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 566777777777777777777777777777777777777664
No 186
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.5e-06 Score=71.23 Aligned_cols=130 Identities=20% Similarity=0.214 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------c--
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS----------L-- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----------l-- 70 (320)
+|.+-..+-.+|.+|+...+|..|.+||++.-.+.|.........+..++..+.+..|+........ +
T Consensus 40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa 119 (459)
T KOG4340|consen 40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA 119 (459)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5666778899999999999999999999999999999888888888888888888877765543322 2
Q ss_pred ------------------CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 71 ------------------NP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 71 ------------------~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
-| +.+....+.|.+.++.|++++|++-|+.|++...-++-.-++++.++...+++..|++
T Consensus 120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 13 4567788999999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 020914 131 VE 132 (320)
Q Consensus 131 ~~ 132 (320)
..
T Consensus 200 ~i 201 (459)
T KOG4340|consen 200 HI 201 (459)
T ss_pred HH
Confidence 63
No 187
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.56 E-value=1.2e-06 Score=71.29 Aligned_cols=89 Identities=19% Similarity=0.168 Sum_probs=82.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKR 117 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 117 (320)
.|+.|.-++..|+|..|...|..-++..|+. +.++|.||.+++.+|+|++|...|..+++-.|++ ++++..+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 8999999999999999999999999999985 6899999999999999999999999999998876 688999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020914 118 VSQLAKDKKRAQEVE 132 (320)
Q Consensus 118 ~~~~~~~~~~A~~~~ 132 (320)
+...+|+.++|..++
T Consensus 224 ~~~~l~~~d~A~atl 238 (262)
T COG1729 224 SLGRLGNTDEACATL 238 (262)
T ss_pred HHHHhcCHHHHHHHH
Confidence 999999999996663
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.55 E-value=2.2e-05 Score=63.63 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIK--QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC-IL 85 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~-~~ 85 (320)
.....+..+...+++..++..+..++. ..+.....+...|..+...+++.+++..+..++..++.........+. ++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 344445555555555555555555554 444455555555555555555555555555555555544333333444 55
Q ss_pred HHccCHHHHHHHHHHHHhhCC
Q 020914 86 EAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p 106 (320)
...|+++.|+..|.+++..+|
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 141 YELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCC
Confidence 555555555555555555444
No 189
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=4.9e-07 Score=70.65 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.+..++.+|..|-.+|-+.-|.-+|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|.+..+..+.|...
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q 020914 120 QLAKDKKRAQEV 131 (320)
Q Consensus 120 ~~~~~~~~A~~~ 131 (320)
...|++.-|.+-
T Consensus 144 YY~gR~~LAq~d 155 (297)
T COG4785 144 YYGGRYKLAQDD 155 (297)
T ss_pred eecCchHhhHHH
Confidence 888888877643
No 190
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.55 E-value=3.8e-06 Score=60.33 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKR 117 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~ 117 (320)
..+-.-|.+....|+.+.|++.|.++|.+-|..+.+|.++++++.-.|+.++|++.+.+++++..+. -.++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4566678899999999999999999999999999999999999999999999999999999996554 346788899
Q ss_pred HHHHHHHHHHHHH
Q 020914 118 VSQLAKDKKRAQE 130 (320)
Q Consensus 118 ~~~~~~~~~~A~~ 130 (320)
++...|+.+.|..
T Consensus 124 lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 124 LYRLLGNDDAARA 136 (175)
T ss_pred HHHHhCchHHHHH
Confidence 9999999888843
No 191
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.54 E-value=7.4e-08 Score=53.02 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=16.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914 64 AETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 64 ~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
No 192
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.51 E-value=1.1e-07 Score=52.36 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914 29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA 62 (320)
Q Consensus 29 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 62 (320)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999963
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.46 E-value=3.3e-07 Score=50.67 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 194
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.46 E-value=3.9e-05 Score=69.27 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=133.8
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNP--- 72 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--- 72 (320)
.+|.+...|..+ +-+..|+..+-+..|..|+. .+|.. ..+|...|..|...|+.+.|...|+++++.+=
T Consensus 344 Qn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 344 QNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred cCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 466777777764 34557778888888888874 46653 36788888888888888888888888887642
Q ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 73 -QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------------------AEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 73 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
+-+..|...|..-....+++.|.+..++|+..-... ..+|..++.+....|-++.-...
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v-- 499 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV-- 499 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH--
Confidence 236778888888888888888888888887752220 12344444444444443333222
Q ss_pred HhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---------------HHhhhcChhH
Q 020914 134 IRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK---------------VYFLLDKEKT 198 (320)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---------------~~~~lg~~~~ 198 (320)
.+...++....+.+..+++... +-...++++.+.|++.+.+-+- .-+.--+.+.
T Consensus 500 ----YdriidLriaTPqii~NyAmfL-------Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 500 ----YDRIIDLRIATPQIIINYAMFL-------EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred ----HHHHHHHhcCCHHHHHHHHHHH-------HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 2222333333344444444333 3455666677777776655442 1111235778
Q ss_pred HHHhhhhhhccccCcCCccchhhHHHHhhH-H-----HHHHHHHHhch
Q 020914 199 DTEKYAPIVNVDKAFESPHTHGSCFQFLRQ-Y-----ADDSFSSAACL 240 (320)
Q Consensus 199 A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~-~-----A~~~~~~al~~ 240 (320)
|...|+++++.-|...+ -++-..|..++. + |++.|++|...
T Consensus 569 aRdLFEqaL~~Cpp~~a-KtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHA-KTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 88888999887663221 112223333332 2 77777777654
No 195
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.45 E-value=2.7e-05 Score=63.05 Aligned_cols=129 Identities=25% Similarity=0.302 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhcCC---CCHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAA-AFLHLVKLNKALADAETTISLNP---QWEKGY 78 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~l~p---~~~~~~ 78 (320)
.+.....+...|......+++..++..+.+++...+.........+. ++...|++++|+..+.+++..+| .....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 35567788999999999999999999999999988887666666666 89999999999999999999887 467778
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
..++..+...+++++|+..+.+++...|. ....+..++..+...+.+..+...
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 88888899999999999999999999999 688888898888888877777554
No 196
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.45 E-value=2.1e-06 Score=72.72 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+.-.....+.+.+..| ++.+|.-.|+...+..|.++..+..+|.|+..+|+|++|...+++++..+|+++.++.+++.
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 3344455555666655 69999999999888888899999999999999999999999999999999999999999999
Q ss_pred HHHHccCH-HHHHHHHHHHHhhCCCCHHHH
Q 020914 84 ILEAMEQY-DDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 84 ~~~~~~~~-~~A~~~~~~al~~~p~~~~~~ 112 (320)
+...+|+. +.+.++..+.-..+|+++.+-
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999 556678888888899987654
No 197
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=4.7e-06 Score=64.44 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-----KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
+.-+-.-|.-++..|+|++|..-|..||.+.|..+ -.|.++|.++.+++.++.|+....++++++|.+..+....
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 34456678899999999999999999999999753 5788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020914 116 KRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 116 ~~~~~~~~~~~~A~~~~ 132 (320)
+.+|..+..++.|++-+
T Consensus 175 Aeayek~ek~eealeDy 191 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDY 191 (271)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 99999999999996553
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.43 E-value=4e-07 Score=50.30 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.38 E-value=9.9e-07 Score=48.66 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
.+|+.+|.+++.+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455566666666666666666666666666553
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.37 E-value=9.3e-05 Score=56.82 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=97.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHH
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
....+.=+.+.+..-..+.+...|. ..-.+.+|.....+|++.+|...|++++. +..+++..+..++++.+.++++..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 3344445666666667777777774 46678899999999999999999999986 678999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHH
Q 020914 94 ALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 94 A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
|...+++..+.+|.. ++....++..+...|++..|+..
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa 182 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA 182 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH
Confidence 999999999999864 66777889999999999988654
No 201
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=9e-07 Score=70.14 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=83.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
+-.-|..++.-.+|+.|+.+|.++|.++|..+..|.+++.||+++.+++.+.....++++++|+...+++.+|.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 44567788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020914 124 DKKRAQEVEN 133 (320)
Q Consensus 124 ~~~~A~~~~~ 133 (320)
.+++|+..+.
T Consensus 93 ~~~eaI~~Lq 102 (284)
T KOG4642|consen 93 GYDEAIKVLQ 102 (284)
T ss_pred cccHHHHHHH
Confidence 9999987643
No 202
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.31 E-value=1.6e-06 Score=47.85 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455556666666666666666666666665543
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.31 E-value=3.6e-05 Score=64.96 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------H
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW-----EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA------E 110 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~ 110 (320)
+++.+++..+.++.++.+++.+....+.+.... ...+..+|.++..++.|+++++.|++|+++..++. .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 555555555555555555555555554442211 23444455555555555555555555555432221 2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020914 111 VSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 111 ~~~~l~~~~~~~~~~~~A~ 129 (320)
++..+|.++...+++++|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal 182 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKAL 182 (518)
T ss_pred hhhhHHHHHHHHHhhhHHh
Confidence 3444555555555555543
No 204
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.30 E-value=1.5e-05 Score=67.13 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----C---
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----W--- 74 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~--- 74 (320)
.....+|+.+...+.|+++++.|++|+++..++ -.++..+|..|..+.++++|+-+..+|..+-.. +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 345668888899999999999999999774332 367889999999999999999999998887432 2
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
.-+.+.++..+..+|+.-+|.++.+.+.++. |-.+.....++.+|...|+.+.|..
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 2457788888999999999999999988872 2234456667788888888877643
No 205
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.30 E-value=2.7e-05 Score=65.88 Aligned_cols=125 Identities=13% Similarity=0.069 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH-LVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
-.|....+...+.+..+.|...|.+|.+..+....+|...|..-+. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3577777888888889999999999997777778999999999667 556666999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHHHHHHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.+++.+.|...|++++..-|... .+|..........|+.+....+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999877655 57777777777777777665553
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.28 E-value=5.7e-05 Score=55.88 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSR 113 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 113 (320)
.+..++.-|...+..|+|++|++.|+......|- ...+.+.+|.+|+..+++++|+..+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3678999999999999999999999999999885 4689999999999999999999999999999999864 566
Q ss_pred HHHHHHHH
Q 020914 114 KIKRVSQL 121 (320)
Q Consensus 114 ~l~~~~~~ 121 (320)
..|.++..
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 66665543
No 207
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=6.7e-05 Score=62.77 Aligned_cols=125 Identities=18% Similarity=0.074 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCH---HHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQWE---KGYFRKGC 83 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~---~~~~~lg~ 83 (320)
+.....+-+.+..|++.+|....++.+.-.|.+--++..--.++...|+...-...+++++-. +|+-| -.+-.++.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 445566777888999999999999999999999988888888999999999999999999977 77764 44555677
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.+...|-|++|.+.-++++++||.+.-+....+.+++..++.+++.++.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 7889999999999999999999999999999999999999999998763
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.24 E-value=6.1e-05 Score=57.19 Aligned_cols=96 Identities=20% Similarity=0.184 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----------------------PTLFSNRAAAFLHLVKLNKALADAE 65 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~ 65 (320)
..+...|......|+.+.++..+.+++.+-... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 345566777788899999999999999874221 3556667777778888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 66 TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 66 ~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
+++..+|-+..+|..+-.+|..+|+..+|++.|+++.+
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877644
No 209
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0011 Score=52.85 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD----P--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---- 75 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---- 75 (320)
.++.+..-|+.|-...+|..|-..|-++-+.. . +-+..|...+.||.+. +.++|+.++++++++..+-.
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~ 111 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTM 111 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHH
Confidence 34556666677777777888877777776442 1 1256677777777655 88999999999998876543
Q ss_pred --HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 76 --KGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 76 --~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
.-+..+|.+|..- .++++|+.+|+++-+..... -.++...+..-...+++.+|+.+++
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iye 178 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE 178 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788888764 88888999888887764433 2345555666666777777776643
No 210
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.22 E-value=8.9e-05 Score=72.38 Aligned_cols=126 Identities=11% Similarity=-0.049 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK-QDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK 76 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 76 (320)
++|+++-.|.+---...+.++.++|.+..++||. +++... ..|..+-+.-..-|.-+.-.+.|++|-+.. +-..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~ 1531 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYT 1531 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHH
Confidence 3444555555544444455555555555555552 232211 122222222222233333444444444432 2233
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
.|..|..+|...+++++|.+.|+..++.......+|..++..+....+-+.|
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHH
Confidence 4445555555555555555555555555555555555555554444443333
No 211
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.19 E-value=0.00046 Score=62.63 Aligned_cols=126 Identities=9% Similarity=0.059 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ---------- 73 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---------- 73 (320)
..|...|..|-..|+.+.|...|++|...+=.. +.+|+.-|..-....+++.|+...++|...-..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 468899999999999999999999999875332 688999999999999999999999999875321
Q ss_pred --------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 --------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 74 --------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
....|...++.....|-++.....|++.+.+.=-.|..-.+.+..+.....++++.+.++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 245688889999999999999999999999999999999999999999898998877765
No 212
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.00018 Score=63.02 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=101.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 18 FKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
+...+.+.+.+.|+.+|++-|.. +.+|...|..-.++.+...|...+-.||-..|.+. ..-..-.+-.++++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHH
Confidence 35688999999999999999974 78899999999999999999999999999999754 22233345567899999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI 134 (320)
Q Consensus 94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 134 (320)
....|++-|...|.+..+|...+.+...+|+.+.|..++++
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999887653
No 213
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.17 E-value=0.00065 Score=63.79 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=96.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914 17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALS 96 (320)
Q Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~ 96 (320)
....++|..|+....+.+...|+..-+...-|.++.++|+.++|..+++..-...+++...+--+-.||..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999999999999999999999999988887777788888899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 020914 97 AFQTALQYNPQSAEVSRKIKRVSQLAKDKKR 127 (320)
Q Consensus 97 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 127 (320)
+|++++..+|+ .+....+-.++.+.+.+.+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999 6666666666666665543
No 214
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.17 E-value=0.0004 Score=56.40 Aligned_cols=78 Identities=15% Similarity=0.065 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE---VSRK 114 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~ 114 (320)
+.-+++-|..-...|+|++|+..|+.+....|.. .++...++.++++.+++++|+...++-+++.|+++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 6889999999999999999999999999998864 678999999999999999999999999999998865 4444
Q ss_pred HHHH
Q 020914 115 IKRV 118 (320)
Q Consensus 115 l~~~ 118 (320)
.|.+
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4444
No 215
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0015 Score=52.55 Aligned_cols=121 Identities=22% Similarity=0.153 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEK 76 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~ 76 (320)
..+..-+..+....+|++|-.++.+|++-..++ +.++-..|.....+..+.++...|++|..+ .|+.+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 445555666677788999999999888554443 466777888888888999999999998877 355444
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A 128 (320)
.-...+-=....-++++|++.|++++.+-..+ .+.+...++++....++.+|
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 44445544556778889999999988874433 23445556667777777766
No 216
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.09 E-value=2.8e-06 Score=70.89 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=85.7
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 51 FLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 51 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
.+..|.+++|++.|..+|.++|.....|-.+|.++..+++...|+..+..++.++|+.+.-+...|.....+|.+.+|-.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred HHHHhhhhHHHHhHHHHHHHHhhhh
Q 020914 131 VENIRSNVDMVQHLDEFKSEMSEKY 155 (320)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
.+.....++..........++..+.
T Consensus 204 dl~~a~kld~dE~~~a~lKeV~p~a 228 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLKEVFPNA 228 (377)
T ss_pred HHHHHHhccccHHHHHHHHHhccch
Confidence 6544444444444333333333333
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=9.9e-05 Score=59.76 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----QD--PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK 76 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 76 (320)
+|.++.-...+|.+.++-|+.+.|..+|+++-+ ++ .....+..+.+.+|...+++..|...|.+++..||.++.
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 366777788899999999999999999985432 22 223466778888888889999999999999999999999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+-.+.|.|+..+|+..+|++..+.++.+.|...
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999764
No 218
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.02 E-value=1.1e-05 Score=44.37 Aligned_cols=31 Identities=39% Similarity=0.783 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
.+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455566666666666666666666666555
No 219
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.98 E-value=1.3e-05 Score=44.06 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666664
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00073 Score=54.90 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCC--CCHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTIS----LNP--QWEKGYFR 80 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p--~~~~~~~~ 80 (320)
..++....++.-.|+|.-.+..+.+.++.+ |..+.....+|.+-.+.|+.+.|..+|+++-+ ++. .+.-.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667788888999999999999999988 67889999999999999999999999995543 332 34556778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.+.+|...++|.+|...|.+++..+|.++.+-++-+.|....|+...|++..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999997664
No 221
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0015 Score=53.27 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=83.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL----VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ 90 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~ 90 (320)
.++.+..+++-|.+..+++.+++. ...+..+|.++..+ ++++.|.-.|+..-...|-.+.....++.|++.+|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 344444444555555555544443 33444455555443 567888888888888778888899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
|++|...++.+|..+++++++..++-.+-...|...++.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 999999999999999999999999988877777776553
No 222
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.0038 Score=58.54 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH----------HhcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETT----------ISLNPQ----------WEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~l~p~----------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
-..|++.|.-+...++.+.|+++|+++ |.-+|. ++..|...|+.+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 467899999999999999999999875 223442 456788889999999999999999988
Q ss_pred HHhh---------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914 101 ALQY---------------------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (320)
Q Consensus 101 al~~---------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 144 (320)
|-.. ...+..+.+.+++.|+..|+..+|..++.....+..+..+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7543 2345667889999999999999999887766666555443
No 223
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=4.1e-05 Score=67.02 Aligned_cols=118 Identities=15% Similarity=0.102 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA-IKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTISL----- 70 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 70 (320)
+.+.+++.+...++..|+|..|.+.+... +...|. ..-+|.++|.+++++|.|.-+..+|.+||+.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999987643 223333 2346789999999999999999999999961
Q ss_pred ----CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 71 ----NP---------QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 71 ----~p---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
.| ..-...|+.|..|...|++-.|.++|.++++....++..|..++.+-...
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 12 23568999999999999999999999999999999999999999876543
No 224
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00021 Score=59.75 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLN---PQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
+.-+-.-|+-|++-.+|..|+.+|.+.|+-. |+ ++..|.+++-+...+|+|..|+....++++++|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 5667788999999999999999999999874 33 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 020914 117 RVSQLAKDKKRAQEVE 132 (320)
Q Consensus 117 ~~~~~~~~~~~A~~~~ 132 (320)
.++..+..+..|....
T Consensus 161 kc~~eLe~~~~a~nw~ 176 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWC 176 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988776553
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00095 Score=55.25 Aligned_cols=122 Identities=20% Similarity=0.180 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-HH--H
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-KG--C 83 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg--~ 83 (320)
.+.-+..|......|++.+|...|..++...|++..+...++.||...|+.+.|...+...=.-.. ...+.. .+ .
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHH
Confidence 344567788899999999999999999999999999999999999999999988777654311111 111111 11 2
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
.+.+.....+. ..+++.+..+|++.++...++..+...|+.+.|.+.
T Consensus 212 ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 212 LLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred HHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33333333322 446677778888888888888888888888888765
No 226
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.79 E-value=3.2e-05 Score=67.65 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=82.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
.-+-+...+.-++++.|+..|.+||+++|+++..+-+++.++...++|..|+..+.+|++++|....+|...|......+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 44556777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020914 124 DKKRAQEVEN 133 (320)
Q Consensus 124 ~~~~A~~~~~ 133 (320)
.+.+|...++
T Consensus 87 ~~~~A~~~l~ 96 (476)
T KOG0376|consen 87 EFKKALLDLE 96 (476)
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 227
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0017 Score=52.87 Aligned_cols=240 Identities=10% Similarity=0.024 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
.++.. +-++..|+|..++..-.+.-... ...+..+.+..+|..+|++..-+......- .....+...++.....-
T Consensus 11 ~LF~i-Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 11 ELFNI-RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELE 85 (299)
T ss_pred hHHHH-HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCc
Confidence 34443 56778899999988877754433 678888899999999999876655443321 12233444455555555
Q ss_pred cCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914 89 EQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
++.++-+.....-+..... +......-+.++...+++++|.........++. .....++......++
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~-----------~Al~VqI~lk~~r~d 154 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEA-----------AALNVQILLKMHRFD 154 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHH-----------HHHHHHHHHHHHHHH
Confidence 5555544444443332222 222333344666666777777655432111111 111122222222333
Q ss_pred HHHHHHHHHHHhHhhcccc-ChhHHh----hhcChhHHHHhhhhhhc-cccCcCCccchhhHHHHhhHH--HHHHHHHHh
Q 020914 167 FVVETMETAVKSWHETSKV-DAKVYF----LLDKEKTDTEKYAPIVN-VDKAFESPHTHGSCFQFLRQY--ADDSFSSAA 238 (320)
Q Consensus 167 ~a~~~~~~a~~~~~~~~~~-~~~~~~----~lg~~~~A~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al 238 (320)
.|.+..++....-+++.-. ...+|. .-++.+.|.-.|+..-+ ..|......-...|...+++| |....+.|+
T Consensus 155 ~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 155 LAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 3333333333222221111 011222 22457777777777776 555543333356677788889 999999999
Q ss_pred chhCCCCCCChhHhhhcccccccccCcccch
Q 020914 239 CLVAPKSIISYPQVWRGQGLRKWRHSQQDGF 269 (320)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (320)
.. ++.+|+++.|+-.+-..+|...+.
T Consensus 235 ~k-----d~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 235 DK-----DAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hc-----cCCCHHHHHHHHHHHHHhCCChHH
Confidence 87 778899999999888888888554
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.78 E-value=0.00076 Score=52.33 Aligned_cols=100 Identities=24% Similarity=0.203 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGC 83 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~ 83 (320)
.+-..++..+...|++++|+..++.++....+. +-+-..+|.+...+|++++|+..++.... ++. +..-..+|+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGD 167 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence 355677888888899999999998888543322 35567788889999999999888765422 221 233556799
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
++...|+-++|+..|++++..+++.+
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCChH
Confidence 99999999999999999998875443
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.00013 Score=64.51 Aligned_cols=107 Identities=27% Similarity=0.309 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---VKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
|..++..+..|+-.+..+....|+..|.+++...|.....+.+++.++.+. |+.-.|+..+..|++++|...++|+.
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 566777888888888889999999999999999999999999999999876 46678999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
++.++..++++.+|+++...+....|.+..
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 999999999999999999888888886544
No 230
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.77 E-value=9.4e-05 Score=66.21 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=94.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSNP-TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 92 (320)
|......|+...|+.|+..|+...|... ....++|.+..+.|-...|-..+.++|.++...+-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4444568999999999999999988653 568899999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 93 DALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 93 ~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.|++.|+.|++++|+++.+-..+-.+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999887776554
No 231
>PRK10941 hypothetical protein; Provisional
Probab=97.74 E-value=0.00056 Score=57.04 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
.....++-.+|...++++.|+.+.+..+.++|+++.-+.-+|.+|.++|.+..|+..++..++..|+++.+-.....+
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 367888999999999999999999999999999999999999999999999999999999999999999876544443
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00051 Score=55.12 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQW----------EKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
..++...|+-++++|+|.+|...|+.|+-. .|.. ...+.+.++|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998753 3443 3578999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 103 QYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 103 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
+.+|++..+++..+......-+..+|.+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 9999999999999998876666666643
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0055 Score=49.06 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC------
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHL-VKLNKALADAETTISLNPQW------ 74 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~------ 74 (320)
..+...+++ ++.++.++|+.+++++|++..+- +.-+..+|.+|..- .++++||.+|+++-......
T Consensus 75 t~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 334444444 44558999999999999886554 34456888888766 89999999999998765432
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
-.++..-++.-..+++|.+|+..|++.....-++.-
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 356777788888899999999999999887666644
No 234
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.69 E-value=0.00083 Score=47.23 Aligned_cols=92 Identities=21% Similarity=0.345 Sum_probs=69.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVK-----------LNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~ 78 (320)
++..++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999998887765 566777887766643 2367778888888888777777
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+.+|.-+-...-|++++.-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 77777766666777777777777665
No 235
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.69 E-value=0.0027 Score=45.06 Aligned_cols=94 Identities=18% Similarity=0.286 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------C
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS------------NPTLFSNRAAAFLHLVKLNKALADAETTISL-------N 71 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~ 71 (320)
...|.-.+..|-|++|...+.+|.+.... ++-++-.++.++..+|+|++++..-+++|.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34455567789999999999999976432 2467888999999999999988888888764 4
Q ss_pred CCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 72 PQWE----KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 72 p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.+.. .+-+++|..+..+|+.++|+..|+++-+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4543 45577899999999999999999988653
No 236
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.67 E-value=0.0028 Score=62.55 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=57.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccC
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQ 90 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~ 90 (320)
+..+|...+++++|.++++..++...+....|...|..++..++-+.|...+.+||+.-|. +.+..-.-|++-++.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 3444444555555555555555544444555555555555555555555555555555554 44444445555555555
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914 91 YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (320)
Q Consensus 91 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 126 (320)
.+.+...|+-.|.-.|.-.+.|.-+.......|..+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence 555555555555555555555544444433333333
No 237
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.64 E-value=0.00011 Score=39.80 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
+++.+|.++..+|++++|++.|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.019 Score=46.40 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-----CCCH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYN-----PQSA 109 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 109 (320)
+..|..-+.+|+..+++++|..++.+|++-..++ +.++-+.|.+...+..+.|+...|++|..+. |+.+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 5678888999999999999999999999654443 4677788889999999999999999998873 2222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh
Q 020914 110 -EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (320)
Q Consensus 110 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 188 (320)
.+...-+.+. ...+.+.|+.+++....+-....-.....+++...++++.....+.++-..+.+-.....+.-.....
T Consensus 111 AmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 111 AMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 2233333332 23456666666532222111111111222333334444444333333333222221111111111111
Q ss_pred ---------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH---HHHHHHHHh
Q 020914 189 ---------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY---ADDSFSSAA 238 (320)
Q Consensus 189 ---------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~---A~~~~~~al 238 (320)
++....++..|...++..-++..- .....-..+-.+++-| -.+.+.+.+
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-LKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-cChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 445556888888887776665322 1111122233344445 566666666
No 239
>PRK10941 hypothetical protein; Provisional
Probab=97.62 E-value=0.00099 Score=55.60 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
-+.++=.++...++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|..+++..++..|+++.+-....++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 45566678899999999999999999999999999999999999999999999999999999999998876665554
No 240
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.61 E-value=0.00037 Score=57.79 Aligned_cols=74 Identities=22% Similarity=0.163 Sum_probs=60.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 117 (320)
-.+.|.-..+.|+.++|...|+.|+.+.|++++++...|......++.-+|-.+|-+||.++|.+.++..+..+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34445556678888999999999999999999999999988888888888999999999999988888776654
No 241
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0018 Score=54.91 Aligned_cols=137 Identities=9% Similarity=-0.036 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
-+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3678888888889999999999999997777789999999999777 566666999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914 121 LAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181 (320)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 181 (320)
..++.+.+..+++..-. .... ......++..+.+.....|......+..+++.+.++.
T Consensus 82 ~~~d~~~aR~lfer~i~--~l~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 82 KLNDINNARALFERAIS--SLPK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HTT-HHHHHHHHHHHCC--TSSC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HhCcHHHHHHHHHHHHH--hcCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999998777542211 1000 0002223333444444445555555555555555544
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.00053 Score=62.39 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHH
Q 020914 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~A~ 95 (320)
..+.+.|.+.+.......|+.+-..+..|.++...|+.++|++.|++++...... .-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4577889999999999999999999999999999999999999999998644432 346888999999999999999
Q ss_pred HHHHHHHhhCCCCHH-HHHHHHHHHHHHHHH-------HHHHHHH
Q 020914 96 SAFQTALQYNPQSAE-VSRKIKRVSQLAKDK-------KRAQEVE 132 (320)
Q Consensus 96 ~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~-------~~A~~~~ 132 (320)
.+|.+.++.+.-... ..+..|.++...++. ++|.++.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~ 370 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELF 370 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence 999999997665433 344556777777777 6665553
No 243
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.0015 Score=61.45 Aligned_cols=123 Identities=15% Similarity=0.042 Sum_probs=100.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|+...+....|.++++.|+.++|..+++..-...+++...+.-+-.||..+|++++|..+|++++..+|+ .+..+.+=
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 36667788888999999999999999888877888889999999999999999999999999999999999 88899999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKK 126 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~ 126 (320)
.+|.+.+.|.+-.+.--+.-+..|+.+. .|..++.+.......+
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 9999999988755555555567888765 3554554444433333
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.60 E-value=0.0011 Score=58.77 Aligned_cols=117 Identities=9% Similarity=0.062 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------------------
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------------------- 73 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------------------- 73 (320)
-....+..+.+.-++.-.+||+++|+.+.+|..+|.= ......+|...|+++++....
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~ 252 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR 252 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence 3455678899999999999999999999999998852 133456677777776654210
Q ss_pred -----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 -----WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 74 -----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
...+...+|.|..++|+.+||++.|+..++.+|. +..++.+|..++...+.+.++..+.
T Consensus 253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1234577899999999999999999999998875 4568999999999999999987764
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.58 E-value=0.0015 Score=59.53 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Q 020914 56 KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA----EVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 56 ~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
..+.|.+.++...+..|+.+-..+..|.++...|+.++|++.|++++.....-. -++..++.++....+|++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 445555555555555555555555555555555555555555555553222221 2344555555555555555443
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.57 E-value=0.0098 Score=51.80 Aligned_cols=114 Identities=14% Similarity=0.022 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-hcCCCCHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ----DPSNPTLFSNRAAAFLH---LVKLNKALADAETTI-SLNPQWEKGYFR 80 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al-~l~p~~~~~~~~ 80 (320)
...++-..|....+|+.-++..+..-.+ -++...+.+.+|-++.+ .|+.++|+..+..++ ...+.+++.+-.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3444445666667777666666655444 33456667777777777 788888888887744 445567778888
Q ss_pred HHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 81 KGCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 81 lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
.|.+|..+ ...++|+..|.++.+++|+. ..=++++.++...|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g 273 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAG 273 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcC
Confidence 88777542 34677888888888887543 33344444444444
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.55 E-value=0.00017 Score=40.15 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=15.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
|.++|.+|..+|++++|+++|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566666666666666666666443
No 248
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.54 E-value=0.00016 Score=39.19 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666664
No 249
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.51 E-value=0.00055 Score=56.77 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
.+..-...+.-....|+.++|...|+.|+.+.|.+++++...|.....-++.-+|-.+|-+||.++|.+.+++.+++...
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 34455566677788999999999999999999999999999999999999999999999999999999999999887553
No 250
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.49 E-value=0.0012 Score=40.12 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.++.+|..+.++|+|++|..+.+.+|++.|++.++....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455666666666666666666666666666666655433
No 251
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.46 E-value=0.0051 Score=46.59 Aligned_cols=111 Identities=13% Similarity=-0.025 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+..-...++....+-...++.+++...+...-.+.|..+++-..-|..+...|+|.+|+..++.+..-.|..+.+--.++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 44556788888889999999999999999888899999999999999999999999999999999998999998888899
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.|+..+|+.+==.. -+.+++-.+ ++.+....
T Consensus 86 ~CL~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 86 LCLYALGDPSWRRY-ADEVLESGA-DPDARALV 116 (160)
T ss_pred HHHHHcCChHHHHH-HHHHHhcCC-ChHHHHHH
Confidence 99999888764322 223444333 44444333
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.42 E-value=0.0013 Score=49.76 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
..++..++..+...|++++|+..+++++..+|.+..+|..+-.+|...|+..+|+..|+++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456777888899999999999999999999999999999999999999999999999988754
No 253
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.41 E-value=0.00089 Score=40.64 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
+.++.+|..+.++|+|++|..+.+.+|++.|+|.++......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4567888888888888888888888888888888776555443
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.39 E-value=0.00031 Score=39.04 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=13.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
+.++|.+|..+|+|++|+++|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 255
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.026 Score=53.27 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HhcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQA----------IKQDPS----------NPTLFSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~a----------l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
.+++.+..+-..++.+.|+++|+++ |.-+|. ++..|..-|.-+...|+.+.|+.+|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4777888888899999999999987 222343 35677778888999999999999998875
Q ss_pred hcC---------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 69 SLN---------------------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 69 ~l~---------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.-. ..+-.+-|.+|..|...|++.+|+..|.+|-..
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 432 456678899999999999999999988876554
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.36 E-value=0.00038 Score=37.00 Aligned_cols=31 Identities=26% Similarity=0.566 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
++..+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555555666666666666666655555553
No 257
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.35 E-value=0.052 Score=47.03 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914 28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 28 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
..+++.+.-+|.+..+|..+...--.+-. .+.-+..|++||+.+|++...+..+-.+.....+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999988876655533 457788999999999999999988888888888888889
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHH
Q 020914 96 SAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 96 ~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
+-+++++..+|++...|...-..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999999988765543
No 258
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0052 Score=54.48 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHH
Q 020914 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTAL 102 (320)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al 102 (320)
..-...|+.|+...+.++..|........+.+.+.+--..|.+++..+|+++..|..-|.=.+..+. .+.|...|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456779999999999999999998888888889999999999999999999999998887777776 999999999999
Q ss_pred hhCCCCHHHHHHHHHH
Q 020914 103 QYNPQSAEVSRKIKRV 118 (320)
Q Consensus 103 ~~~p~~~~~~~~l~~~ 118 (320)
+.+|+++..|...-.+
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999988765443
No 259
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.31 E-value=0.0047 Score=42.38 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHH
Q 020914 61 LADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKD 124 (320)
Q Consensus 61 ~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 124 (320)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|+. ..+...+-.+...+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344455555555555555555555555555555555555555555443 3344444444444443
No 260
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.22 E-value=0.003 Score=43.30 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--EKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
.+..+++++..+|++..+.+.+|..+...|++++|++.+-.+++.+|++ ..+.-.+=.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4677889999999999999999999999999999999999999999876 55555555555555554444444443
No 261
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.21 E-value=0.00068 Score=35.95 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.++..+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34556666666666666666666666666554
No 262
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.19 E-value=0.022 Score=49.93 Aligned_cols=121 Identities=16% Similarity=0.159 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C-C---
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHLVKLNKALADAETTISL--N-P--- 72 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~-p--- 72 (320)
....+..|...+.+....|+++.|...+.++...++. .+.+.+..+......|+..+|+..++..+.. . +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3456788999999999999999999999999886522 4788999999999999999999999888871 1 0
Q ss_pred ----------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 73 ----------------------------QWEKGYFRKGCILEAM------EQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 73 ----------------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
..+.++..+|.-...+ +..++++..|+++++++|+...+|..+|..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0135677777777777 889999999999999999999999999887
Q ss_pred HHHHH
Q 020914 119 SQLAK 123 (320)
Q Consensus 119 ~~~~~ 123 (320)
+...-
T Consensus 302 ~~~~~ 306 (352)
T PF02259_consen 302 NDKLL 306 (352)
T ss_pred HHHHH
Confidence 75443
No 263
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.08 E-value=0.00071 Score=59.56 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIK-Q--------DP---------SNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
-.|.++|.+++..|.|.-++.+|.+|++ . .| ...++.|+.|..|...|+.-.|.++|.+++.
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 3567999999999999999999999995 1 12 1358899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 020914 70 LNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 70 l~p~~~~~~~~lg~~~~~ 87 (320)
....+|..|.+++.|...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 999999999999998764
No 264
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.07 E-value=0.034 Score=45.72 Aligned_cols=198 Identities=12% Similarity=0.092 Sum_probs=103.2
Q ss_pred ccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC-----CCH-HHHHHHHHHHHHHH
Q 020914 54 LVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDALSAFQTALQYNP-----QSA-EVSRKIKRVSQLAK 123 (320)
Q Consensus 54 ~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~-~~~~~l~~~~~~~~ 123 (320)
..+.++|+..|++++++.|.. ..++-++-.+++++++|++-.+.|.+.|..-. +.. .....+-..-...+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 347788888888888888764 34667777788888888888888777765311 111 11111111111111
Q ss_pred HHHHHHHHHHH-hhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc------------cc---Ch
Q 020914 124 DKKRAQEVENI-RSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS------------KV---DA 187 (320)
Q Consensus 124 ~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~------------~~---~~ 187 (320)
+.+-..++++. ..++..+ ....+.-.....+|..+..++.+....+...+-...+...- .+ .-
T Consensus 120 ~m~LLQ~FYeTTL~ALkdA-KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDA-KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhHHHHHHHHHHHHHHHhh-hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 22222122110 0011100 00111112233467777777777666666655443333211 00 11
Q ss_pred hHHhhhcChhHHHHhhhhhhccccCcCCccchhhH-------HHHhhHH--HHHHHHHHhchhCCCCCCChhHh
Q 020914 188 KVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSC-------FQFLRQY--ADDSFSSAACLVAPKSIISYPQV 252 (320)
Q Consensus 188 ~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~-------~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~ 252 (320)
.+|..+.+-++-...|++++.+......+...|.+ ...-|+| |-..|=.|.+-.....+|.-...
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 16667777777778889999887665544445544 3344556 66666666655555555655444
No 265
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.05 E-value=0.02 Score=46.26 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=68.5
Q ss_pred HcCCHHHHHHHHHHHHhc----CCC---CHHHHHHHHHHHHHccCHH-------HHHHHHHHHHhcC--CC----CHHHH
Q 020914 19 KAGNYLKAAALYTQAIKQ----DPS---NPTLFSNRAAAFLHLVKLN-------KALADAETTISLN--PQ----WEKGY 78 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~----~p~---~~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~l~--p~----~~~~~ 78 (320)
....+++|++.|.-|+-. .+. -+.++..+|++|..+|+.+ +|+..|++++... |. ...+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345788999999888732 222 2678999999999999955 5566666666543 22 25788
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+.+|.+..++|++++|+..|.+++.....+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999998654443
No 266
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.01 E-value=0.022 Score=42.44 Aligned_cols=92 Identities=11% Similarity=-0.094 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+++.-...+......-...++.+++...+...-.+.|+.+++-..-|..+...|+|.+|+..++....-.+..+-+--.+
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 34555667777788888899999999999888888999999999999999999999999999999998888888888888
Q ss_pred HHHHHHccCHHH
Q 020914 82 GCILEAMEQYDD 93 (320)
Q Consensus 82 g~~~~~~~~~~~ 93 (320)
+.|+..+|+.+=
T Consensus 85 A~CL~al~Dp~W 96 (153)
T TIGR02561 85 ALCLNAKGDAEW 96 (153)
T ss_pred HHHHHhcCChHH
Confidence 999988888753
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.059 Score=45.73 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
|.+.-++..--..++..|+...-...+++.+-. +|+. .-+.-.++-++...|-|++|.+.-++++++||.+..+.+
T Consensus 134 PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 566667777778889999999999999999977 7766 344455677788999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQS----AEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
.++.++...|++.++.+...+.-..=... ..-|-..+.++...+.++.|++++.
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999999999999998877643221110 0112234455566678888877754
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.97 E-value=0.19 Score=42.62 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc----CCCC----------HHHHHHHHHHHHHccCHH---HHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAG-NYLKAAALYTQAIKQ----DPSN----------PTLFSNRAAAFLHLVKLN---KALADAETTI 68 (320)
Q Consensus 7 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~----~p~~----------~~~~~~lg~~~~~~g~~~---~A~~~~~~al 68 (320)
++.+++.|...+..+ ++++|+..+++|+++ .+.. ..++..++.+|...+.++ +|....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 467899999999999 999999999999877 2211 367888899998888765 4555555565
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
.-.|+.+..+...=.+....++.+++.+.+.+++.--+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 66788888876666666668999999999999998655
No 269
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.90 E-value=0.0017 Score=51.67 Aligned_cols=57 Identities=25% Similarity=0.492 Sum_probs=34.3
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 52 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
...++.+.|.+.|.+++.+-|+....|+++|....+.|+++.|.+.|++.++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555566666666666666666666666666666666666666666666666554
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.87 E-value=0.26 Score=42.81 Aligned_cols=194 Identities=14% Similarity=0.054 Sum_probs=124.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-KGYFRKGCILEA 87 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~ 87 (320)
...|.+....|+-..|...-.++-.+-..+ +-++..-+.+-..-|+++.|.+-|+-.+. +|+.- -.+..+-.--..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr 166 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence 445677777889999999988887544333 44555667778888999999999987765 55322 122222223346
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH--HHHHHHhhhhcchhhhhhHH
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD--EFKSEMSEKYGAEECWKHVF 165 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 165 (320)
+|..+-|+.+-+.+-...|.-+.++...-......|+++.|+.+..-+.......... .....+...-. .
T Consensus 167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA--------~ 238 (531)
T COG3898 167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA--------M 238 (531)
T ss_pred cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH--------H
Confidence 8999999999999999999999998888777888899999998865433322221110 11111111000 0
Q ss_pred HHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCc
Q 020914 166 SFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 166 ~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
.........|...-..+.++.|. .++..|+..++-..++.+.+..|..
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 00111122233333445555554 7888888888888888888887754
No 271
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0029 Score=53.57 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-----------S--------NPTLFSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
....+.|...+..+++..|..-|.+++..-. + -.....+++.+-...+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 4455677889999999999999999985311 1 12456778899999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (320)
Q Consensus 69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 126 (320)
..+++...+++.+|+.+..+.++++|++.++.+....|++......+..+.....++.
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999988777766554444433
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.83 E-value=0.035 Score=43.51 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHH----HH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWEK----GY 78 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~----~~ 78 (320)
.++..+|..|.+.|++++|++.|.++.+..... ..++.++-.+....+++........++-.+-. +++. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456666666666666666666666665543221 35556666666666666666666666654422 2222 12
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
..-|..+...++|.+|.+.|-.++.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2235555556666666666655543
No 273
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.82 E-value=0.019 Score=40.49 Aligned_cols=83 Identities=22% Similarity=0.145 Sum_probs=66.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 020914 47 RAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQ-----------YDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 47 lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 112 (320)
++..++..|++-+|++..+..+...+++. ..+...|.++..+.. .-.|+++|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999999988765 567778999877643 2358999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020914 113 RKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 113 ~~l~~~~~~~~~~~~A~ 129 (320)
+.+|.-......|+++.
T Consensus 82 ~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 88887655555565553
No 274
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.78 E-value=0.013 Score=50.95 Aligned_cols=91 Identities=20% Similarity=0.366 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--------CCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQD--------PSN----------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.-|...+++++|..|+.-|..||++- |.. ..+-..+..||.++++.+-|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 34566778888888888888887762 111 234567999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
+..-+...|.|+..+.+|.+|...+--+.
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776554
No 275
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.77 E-value=0.16 Score=44.47 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHhhCCCCHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEA---MEQYDDALSAFQT-ALQYNPQSAEV 111 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~ 111 (320)
++....++=.+|+...+|+.-+...+..-.+ -++.+..-+..|.++-+ .|+.++|+..+.. .....+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3577788888999999999999999887776 45677788899999999 9999999999999 44567788999
Q ss_pred HHHHHHHHHH
Q 020914 112 SRKIKRVSQL 121 (320)
Q Consensus 112 ~~~l~~~~~~ 121 (320)
+..+|.++..
T Consensus 220 ~gL~GRIyKD 229 (374)
T PF13281_consen 220 LGLLGRIYKD 229 (374)
T ss_pred HHHHHHHHHH
Confidence 9999998854
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.75 E-value=0.044 Score=48.95 Aligned_cols=74 Identities=15% Similarity=-0.002 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRK 114 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~ 114 (320)
..+...+|.|.+++|+.++|++.++..++.+|. +..++.++-.++..+++|.++...+.+.=++ -|..+...+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 344556777777777777777777777776664 4556777777777777777777666665333 2344443333
No 277
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.069 Score=43.74 Aligned_cols=114 Identities=22% Similarity=0.242 Sum_probs=98.5
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHH
Q 020914 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD-DAL 95 (320)
Q Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~-~A~ 95 (320)
....+-..|+..-..+|.++|.+-.+|..+-.++..++ +..+-++.++..+.-+|++-+.|+.+-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 34455678999999999999999999988888888776 5678889999999999999999999999999999998 889
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+..+.++..+..+..+|...--+....+.++.-+.+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999998888887777777765443
No 278
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.64 E-value=0.33 Score=42.71 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=73.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------C------------CCC---HHHHHHHHHH
Q 020914 34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------------N------------PQW---EKGYFRKGCI 84 (320)
Q Consensus 34 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------------~------------p~~---~~~~~~lg~~ 84 (320)
+..+|.+.+++..++.++..+|+.+.|.+..++||-. + +.| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4568999999999999999999999999999988642 1 112 2356777888
Q ss_pred HHHccCHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQ-SAEV-SRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~l~~~~~~~~~~~~A~~~ 131 (320)
+.+.|-+.-|.+..+-.+.++|. |+-. ...+-......++++--+++
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~ 161 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDF 161 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHH
Confidence 88999999999999999999999 6543 33333344445666655554
No 279
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.037 Score=46.12 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
.+.-..-+.-....|++.+|...|..++...|++..+...++.||...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 455566677788899999999999999999999999999999999999999999877654
No 280
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.21 Score=44.57 Aligned_cols=194 Identities=13% Similarity=0.106 Sum_probs=117.6
Q ss_pred HcCCHHHHHHHHHHHHhcC------CCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC-------C
Q 020914 19 KAGNYLKAAALYTQAIKQD------PSN--------PTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ-------W 74 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~~------p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-------~ 74 (320)
..|-+++|.++-+++|..- |-. ...+-.+..|-.-.|++.+|++....+.+. .|. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4566788888888887542 111 245667888999999999999988887765 444 3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHhHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SAE--VSRKIKRVSQLAKDKKRAQEVENIRSNV-DMVQHLDEFKSE 150 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~ 150 (320)
+..++.+|.-....+.++.|...|..|++.-.. +.. +-.+++.+|...++.+.--+..+..... ............
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHH
Confidence 567888999999999999999999999987443 323 3455677777766554433332211111 011111112223
Q ss_pred HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC----------hhHHhhhcChhHHHHhhhhhhccccCc
Q 020914 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD----------AKVYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----------~~~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
+..-+|-.....+.+.++.....+.++.- ++..++ ..++..+|+..++.+...-++++.+..
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 33333333333444444444433333222 111111 117888899999999998888876544
No 281
>KOG2449 consensus Methylmalonate semialdehyde dehydrogenase [Amino acid transport and metabolism; Carbohydrate transport and metabolism]
Probab=96.61 E-value=7e-05 Score=53.92 Aligned_cols=95 Identities=19% Similarity=0.322 Sum_probs=83.4
Q ss_pred HHHHhhHHHHHHHHHHhchh-CCCCCCChhHhhhcccccccccCcccchhhhccccccccccccccccccccccccCccc
Q 020914 222 CFQFLRQYADDSFSSAACLV-APKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLWFIPSSNEKGKTLCRDPEV 300 (320)
Q Consensus 222 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (320)
+...+..||...|-++-.+. .|+...+++++|-.-+.+++..+-.++.+...+.|.-...|+..+....+..+|.+++.
T Consensus 54 r~~yl~~ya~~~f~~~tiLsvtP~ms~ykeeI~gpVlv~l~~~tldd~I~Iin~nPygn~t~i~Tsn~atark~~~e~~a 133 (157)
T KOG2449|consen 54 RFIYLPGYAEGNFVGPTILSVTPNMSCYKEEIFGPVLVRLETETLDDAIFIINNNPYGNGTAIFTSNGATARKFCHEPDA 133 (157)
T ss_pred ceEEeeccccCCcccceEEEecCCcceeHhhhhcceEEEEeecCCCceeEEEecCCCCceeEEEecCcHHhhhhhcCCCc
Confidence 34444556777777776665 78888999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhchHHHhhh
Q 020914 301 LDISAHEVFPRLFKEK 316 (320)
Q Consensus 301 ~~~~~~~~~~~~~~~~ 316 (320)
.++.++..+++.|+.+
T Consensus 134 ~qig~~~~ip~ilk~~ 149 (157)
T KOG2449|consen 134 GQIGANVPIPVILKMF 149 (157)
T ss_pred cceeccccccccccce
Confidence 9999999999999875
No 282
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.58 E-value=0.023 Score=51.58 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=88.9
Q ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 10 LKDKGNEFF-KAGNYLKAAALYTQAIKQDPSNP--TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 10 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
++.++-.|. .+|+..+|..|+..++-..|... .++..+|.++.+.|...+|--.+.-|+.-.|....-++-+|+++.
T Consensus 215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a 294 (886)
T KOG4507|consen 215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA 294 (886)
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence 344444444 57999999999999998877653 578899999999999999998888888888877777999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.++.+.....+|..+.+..|.........
T Consensus 295 ml~~~N~S~~~ydha~k~~p~f~q~~~q~ 323 (886)
T KOG4507|consen 295 MLGEYNHSVLCYDHALQARPGFEQAIKQR 323 (886)
T ss_pred HHhhhhhhhhhhhhhhccCcchhHHHHHH
Confidence 99999999999999999999876654443
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.57 E-value=0.34 Score=45.37 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 8 MSLKDKGNEFFKAG-----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 8 ~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
.+.+.+|.+|.... ++..|...|.++-+.. ++.+.+.+|.+|..-. +...|..+|..|.+. .+..+.+
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence 35677889998853 7788999999998876 4788999999998776 578999999888654 5788999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 020914 80 RKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-KDKKRAQ 129 (320)
Q Consensus 80 ~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~ 129 (320)
.+|.||.. ..+...|..+|+++-+.+ ++.+...++.++... +.+..+.
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence 99999865 358899999999999988 555555666555433 4444443
No 284
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.034 Score=50.92 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.+.+-+...++..+|..+++.|...+..-|.+ +....+++.||..+.+.+.|.+.++.|=+.+|.++-.-..+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 35567788899999999999999999876654 577889999999999999999999999999999998888888
Q ss_pred HHHHHccCHHHHHHHHHHHHhhC
Q 020914 83 CILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
.+....+.-++|+.+..+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 88889999999999988877653
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.50 E-value=0.0053 Score=48.98 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=56.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 75 (320)
.....++.+.|.+.|.+++++.|+....|+.+|....+.|+.+.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999999999999999999999999999999999999999999764
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.50 E-value=0.21 Score=43.29 Aligned_cols=103 Identities=10% Similarity=-0.024 Sum_probs=83.1
Q ss_pred cchHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 2 AAEAEEMSLKDKGNEFFKAGN------------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
.+|.+.++|..+....-..-. .+.-+..|++||+.+|++..++..+=.+.....+.++..+-+++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 468889999988876654432 46778899999999999999999998899999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhh
Q 020914 70 LNPQWEKGYFRKGCILEA---MEQYDDALSAFQTALQY 104 (320)
Q Consensus 70 l~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~ 104 (320)
.+|++...|...-..... .-.++.....|.++|..
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 999999988765433322 23577888888888775
No 287
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.50 E-value=0.0084 Score=50.04 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=76.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 30 YTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR-KGCILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 30 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
|.++-...|+++..|...+.--.+.|-|.+--..|.++++.+|.+++.|.. -+--++..++++.+...|.++|+.+|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555678899999999988888999999999999999999999999976 4455778899999999999999999999
Q ss_pred HHHHHHHHHH
Q 020914 109 AEVSRKIKRV 118 (320)
Q Consensus 109 ~~~~~~l~~~ 118 (320)
+..|...-++
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 9998776543
No 288
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.4 Score=42.87 Aligned_cols=165 Identities=9% Similarity=-0.057 Sum_probs=106.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-C--HH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQ---DPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-W--EK 76 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~--~~ 76 (320)
+-.+..+-.-.|++.+|++....+.+. .|. .+..++.+|.-....|.++.|...|..|+++... + ..
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334556677889999999998888754 344 3577888999999999999999999999987543 3 34
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS----------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 146 (320)
+-.++|.+|.+.|+-+.-.+..+ .+.|.+ ..+++..|......+++.+|............+.++..
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 55678999999877655433333 345553 23455666666778888888766432222333344444
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHH
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVK 177 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 177 (320)
+..--...+|.+....|+..++.+...-+..
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHH
Confidence 4444444455555555555555544444443
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.45 E-value=0.17 Score=37.04 Aligned_cols=76 Identities=12% Similarity=0.133 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHccC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 40 NPTLFSNRAAAFLHLVK---LNKALADAETTIS-LNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.....+++++++.+..+ .++.+..++..++ -.|+ .-+..|.++..+.++++|+.|+.+.+..|+..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45778899999988765 5688999999997 4554 45688889999999999999999999999999999988654
Q ss_pred H
Q 020914 115 I 115 (320)
Q Consensus 115 l 115 (320)
-
T Consensus 111 k 111 (149)
T KOG3364|consen 111 K 111 (149)
T ss_pred H
Confidence 3
No 290
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.03 Score=46.22 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
.....++=..+...++++.|..+.++.+.++|+++.-+.-+|.+|.++|.+.-|++.++..++..|+++.+-.....+
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 356667777888999999999999999999999999999999999999999999999999999999998876544443
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.31 Score=38.20 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+-..++..+...|++++|+..++.++....+. .-+-..|+.+....|++++|+...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45667888889999999999999888653332 345677888888899999987664
No 292
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.42 E-value=0.34 Score=44.40 Aligned_cols=125 Identities=11% Similarity=0.008 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGC 83 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 83 (320)
.+-..|..-.......|+++...-.|++++.--....+.|...+.-....|+.+-|-..+..+.++. |+.+..+..-+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4455666666777789999999999999998777888999999999999999999999998888874 667788888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
.-...|++..|...+++...-.|+...+-.....+....|..+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 8888999999999999999888998888777777777777777664
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.42 E-value=0.067 Score=40.60 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
...+..+..+-...++.+.+...+.-.-.+.|+.+..-..-|.++...|++.+|+..|+....-.|..+.+...++.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 45677777888888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 020914 121 LAKDKKR 127 (320)
Q Consensus 121 ~~~~~~~ 127 (320)
..++..-
T Consensus 90 ~~~D~~W 96 (160)
T PF09613_consen 90 ALGDPSW 96 (160)
T ss_pred HcCChHH
Confidence 7776653
No 294
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.34 E-value=0.082 Score=52.48 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH------HHHHH-HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAA------LYTQA-IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN------ 71 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------ 71 (320)
..+......|......|.+.+|.+ .+... -.+.|..+..+..++..+..+|++++|+..-.++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 566778888888999999998888 44422 24578889999999999999999999999988876552
Q ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 72 --PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 72 --p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
|+....+.+++...+..++...|...+.+++.+ .|.-.....+++.++...++++.|+...+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 566788999999999999999999999999886 45555667888888888888888877643
No 295
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.038 Score=45.60 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
++=..+...++++.|..+.++.+.++|.++.-+.-+|.+|.++|.+.-|++.++..+...|+.+.+-..++...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999999999999999999988776665543
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.25 E-value=0.012 Score=33.50 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.++.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777888888888888888888887775
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.16 Score=46.41 Aligned_cols=105 Identities=19% Similarity=0.052 Sum_probs=82.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHhcCCCCHHHHHHH------HHHH
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAET-TISLNPQWEKGYFRK------GCIL 85 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~l~p~~~~~~~~l------g~~~ 85 (320)
+...+...+....+.-....++..+|+++.++.++|.+....|..-.++..+.. +....|++......+ |...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 455566677888888888889999999999999999988888877777666655 888888887665555 8888
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 117 (320)
..+|+..++....++++.+.|.++.+...+..
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 88888899999999999999988665544433
No 298
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.15 E-value=0.11 Score=48.66 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKA-----GNYLKAAALYTQAIK-------QDPSNPTLFSNRAAAFLHLV-----KLNKALADAETT 67 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~a 67 (320)
.++.+...+|.+++.- .+.+.|+.+|+.+.+ .. .+.+.+.+|.+|.... ++..|+..|.++
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 4567788888888765 589999999999977 33 5678899999999854 678899999988
Q ss_pred HhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 68 ISLNPQWEKGYFRKGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 68 l~l~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
-.+. ++.+.+.+|.++..-. ++..|.++|..|.+. .+..+...++.++..-
T Consensus 320 A~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 320 AELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred HhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 7765 6778888999998755 578999999988774 6778888888887643
No 299
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.13 E-value=0.11 Score=38.07 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAG---NYLKAAALYTQAIK-QDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
+.+..++++.++.... +..+.+.+++..++ -.|.. -+..+.++..+.++++|++++.+.+..|+..|++.++.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456788888887654 46789999999996 55543 4788999999999999999999999999999999988754
Q ss_pred HHH
Q 020914 81 KGC 83 (320)
Q Consensus 81 lg~ 83 (320)
.-.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.11 E-value=0.014 Score=33.22 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
+.++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356777888888888888888888887765
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.01 E-value=1.6 Score=42.22 Aligned_cols=123 Identities=14% Similarity=-0.014 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--- 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 74 (320)
++-....+.....+.++.+|..+..++-..-|. .++.--..|.+....|+.++|++..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 445566788888999999999999888754332 14566667888899999999999999999987764
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHH--HHHHHHHHHHHHHHHH
Q 020914 75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----SAEVSR--KIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~--~l~~~~~~~~~~~~A~ 129 (320)
..++...|.+.+-.|++++|..+.+.+.++... ...+|. ..+.+....|+...+.
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 457888999999999999999999998887332 333443 3356666777444443
No 302
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.01 E-value=0.25 Score=42.06 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-------
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQW-EKGYFRKGCILEAME------- 89 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~~~------- 89 (320)
+..+|+..|..+.+ ..++.+.+.+|..|.. ..+..+|...|++|....-.. ..+.+.+|.+|..-.
T Consensus 92 ~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 34455555553322 2334555555555544 235555555555555443222 233444444444321
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
+...|...|.++-... ++.+...+|.++
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 1224555555544443 444444455444
No 303
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.01 E-value=0.014 Score=32.61 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
++|..+|.+-...++|++|++.|+++|++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46788899999999999999999998876
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.86 E-value=0.16 Score=44.52 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-C-------------------------C------CHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--D-P-------------------------S------NPTLFSNRAAAF 51 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~-p-------------------------~------~~~~~~~lg~~~ 51 (320)
.+...+..++.+...|+..+|+..++..+.. . + . .+.++..+|.-.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999988871 1 1 0 145677777777
Q ss_pred HHc------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH-----------------HHHHHHHHHHHhhCCC
Q 020914 52 LHL------VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY-----------------DDALSAFQTALQYNPQ 107 (320)
Q Consensus 52 ~~~------g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~-----------------~~A~~~~~~al~~~p~ 107 (320)
..+ +..++++..|.++++++|+...+|+.+|..+..+-+. ..|+..|-+++...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 777 8889999999999999999999999999888654221 3477888888888776
No 305
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.75 E-value=0.096 Score=51.45 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLV-------KLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
....+.++....|++|+..|++.-.-.|.. -++.+..|.+....- .+++|+..|++.. -.|.-|--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence 344567788889999999999999888875 477888888887652 3566776666543 25677888999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
.|.+|.++|+|+|-+++|.-|++..|.++..-
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 99999999999999999999999999987653
No 306
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.62 E-value=0.17 Score=50.47 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----- 70 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 70 (320)
|..+..+..++.++...|++++|+..-.++.-+ .|+....+.+++......++...|+..+.+++.+
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 567788999999999999999999998888644 3556788999999999999999999999999876
Q ss_pred ---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 71 ---NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--------SAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 71 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
.|.-.....+++.++..+++++.|+.+.+.|++.+.. ....+..++++....+.+..|...
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3555667789999999999999999999999996432 245677777888788888777544
No 307
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.22 Score=43.48 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----HHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ----YDDAL 95 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~----~~~A~ 95 (320)
-.++-+.+...++..+|+.-.+|+.+..++.+.+. +..-+..++++++.||.+-.+|..+-.+...... ..+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 46677888889999999999999999999998775 5888999999999999999998887766655443 46778
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 96 SAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 96 ~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
+...+++..++.+..+|.....+..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8999999999999999998887765
No 308
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.47 E-value=0.36 Score=39.90 Aligned_cols=51 Identities=6% Similarity=0.099 Sum_probs=42.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 19 KAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
...+.++|+..|++++++.|... .++-.+-.+++++|+|++-+..|.+.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34578999999999999988763 5777888899999999998888887664
No 309
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.41 E-value=0.095 Score=36.25 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=42.7
Q ss_pred HHHccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 51 FLHLVKLNKALADAETTISLNPQ---------WEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 51 ~~~~g~~~~A~~~~~~al~l~p~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
..+.|+|.+|++.+.+.+..... ...+..++|.++...|++++|+..++.++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34677888887777776655321 245678899999999999999999999998744
No 310
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.38 E-value=0.068 Score=45.17 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 60 A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
|..+|.+|+.+.|++...|+++|.++...|+.-+|+-+|-+++......+.+..++..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777888888888888888888888878888888888888877655567777777766655
No 311
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.32 E-value=0.6 Score=44.07 Aligned_cols=60 Identities=28% Similarity=0.287 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHH------HHhc----CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAET------TISL----NPQW-EKGYFRKGCILEAMEQYDDALSAFQTA 101 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~------al~l----~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~a 101 (320)
+.|-.-|.+|.+..++++|+++|++ ++++ .|.. ...--..|.-+...|+++.|+.+|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 5566677888888888888888764 4444 3432 333445678888889999888887654
No 312
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.29 E-value=0.068 Score=29.47 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=7.8
Q ss_pred HHHHHHHHHHccCHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALAD 63 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~ 63 (320)
++.+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33344444444444444444
No 313
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.25 E-value=0.88 Score=41.39 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 31 TQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 31 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
++-|+.+|.+..+|+.+-.-+..+ .+++....|++.+.-.|..+.+|......-...++|+.-...|.+||..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455677787777777776655544 7778888888888888888877777777777777777777777777764
No 314
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.10 E-value=0.33 Score=31.95 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN 40 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (320)
+......|.-++.+.+.++|+..+.++++..++.
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~ 39 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDR 39 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh
Confidence 3444455555555555555555555555544443
No 315
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.09 E-value=0.15 Score=48.03 Aligned_cols=115 Identities=25% Similarity=0.413 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS----NPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
.+......|+.+++.+++.+|.--|..++.+-|. .+....+.+.|+..+ |+|.+++...+-++...|....++.
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 3456778899999999999999889999988774 356677888888766 6899999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
.++.+|..+++++-|++...-.....|.+..+-....++..
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 99999999999999999988888899999766554444433
No 316
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.08 E-value=0.039 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~ 36 (320)
.+..+|.+-+..++|++|+..|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555666666555555543
No 317
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=1.5 Score=40.30 Aligned_cols=104 Identities=20% Similarity=0.121 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-H
Q 020914 25 KAAALYTQAIKQDPSNPTLFSN--RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT-A 101 (320)
Q Consensus 25 ~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-a 101 (320)
-++..+...+.++|.++..+.. +...+..++....++-.+..++..+|++..++.++|.+....|....++..+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3677777777888888877444 588888899999999999999999999999999999999888887777766655 9
Q ss_pred HhhCCCCHHHHHHH------HHHHHHHHHHHHH
Q 020914 102 LQYNPQSAEVSRKI------KRVSQLAKDKKRA 128 (320)
Q Consensus 102 l~~~p~~~~~~~~l------~~~~~~~~~~~~A 128 (320)
+...|.+......+ +.....+++..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEA 161 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHH
Confidence 99999998877666 4444444444444
No 318
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.03 E-value=2.1 Score=37.75 Aligned_cols=101 Identities=15% Similarity=0.061 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCC------------C---HHHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------------DPS------------N---PTLFSNRAAAFLH 53 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~lg~~~~~ 53 (320)
.|-+++++.+++.++..+|++..|.+..++||=. ++. | -.+.+.....+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 5778999999999999999999999999999622 111 1 2567777888999
Q ss_pred ccCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 54 LVKLNKALADAETTISLNPQ-WEKG-YFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 54 ~g~~~~A~~~~~~al~l~p~-~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
.|.+..|++.++-.+.+||. ++-+ .+.+-....+.++|+-=++.++....
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999999998 6654 34444444567788777777765544
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.02 E-value=0.36 Score=39.10 Aligned_cols=79 Identities=14% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914 5 AEEMSLKDKGNEFFKAGNY-------LKAAALYTQAIKQD--PS----NPTLFSNRAAAFLHLVKLNKALADAETTISLN 71 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~-------~~A~~~~~~al~~~--p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (320)
..+..+..+|.+|-..|+- ..|+..|.++++.. |. ...+.+.+|...+++|++++|+..|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4467888999999999984 45666666666443 22 25789999999999999999999999999864
Q ss_pred CCCH-HHHHHHHH
Q 020914 72 PQWE-KGYFRKGC 83 (320)
Q Consensus 72 p~~~-~~~~~lg~ 83 (320)
.... ..+..+|.
T Consensus 196 ~~s~~~~l~~~AR 208 (214)
T PF09986_consen 196 KASKEPKLKDMAR 208 (214)
T ss_pred CCCCcHHHHHHHH
Confidence 3332 34544443
No 320
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.97 E-value=0.34 Score=31.87 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHccCHHHHHHHHHHHHhh
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG---CILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg---~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.-....|.-++..++.++|+..++++++..++.+..+..+| .+|...|+|.++++.--+-+.+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788899999999999999999888777665555 6788999999998877666554
No 321
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.28 Score=45.27 Aligned_cols=90 Identities=17% Similarity=0.055 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.++.+-|.-.++..+|..+++.|...+..-|.+ .+....++.||..+.+.+.|.++++.|-+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 445667777889999999999999999876643 56788899999999999999999999999999998887777
Q ss_pred HHHHHHHHHHHHHHHH
Q 020914 116 KRVSQLAKDKKRAQEV 131 (320)
Q Consensus 116 ~~~~~~~~~~~~A~~~ 131 (320)
..+....+.-++|+..
T Consensus 435 ~~~~~~E~~Se~AL~~ 450 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTC 450 (872)
T ss_pred HHHHHHhcchHHHHHH
Confidence 7776667777777644
No 322
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.96 E-value=0.75 Score=40.91 Aligned_cols=122 Identities=15% Similarity=0.021 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhc---------CC---C
Q 020914 9 SLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALA--DAETTISL---------NP---Q 73 (320)
Q Consensus 9 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~l---------~p---~ 73 (320)
-+..-+.-+...|. -+.|++.++.+++..|.+...-... ...-...|.+|+. .+.+.+.+ .| .
T Consensus 381 ~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 381 YLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 45566777888887 7889999999999988875332221 1122223444432 22233322 23 2
Q ss_pred CHHHHHHHH--HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 WEKGYFRKG--CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 74 ~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
+.+.-..++ .-++..|+|.++.-+-.-..++.| ++.++..+|-+....+++++|.+...
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444 456789999999999999999999 99999999999999999999987743
No 323
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.95 E-value=0.11 Score=36.02 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=46.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPS---------NPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 72 (320)
.....|+|.+|++.+.+.+..... ...+..++|.+....|++++|+..+++++++-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 456789999998888888755221 246788899999999999999999999998854
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.88 E-value=0.46 Score=35.58 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
..+.....+-...++.+++...+...--+.|+.+..-..-|.++...|++.+|+..|+....-.+..+.+...++.++..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 44555555556689999999999888889999999999999999999999999999999999888888888888888887
Q ss_pred HHHHHH
Q 020914 122 AKDKKR 127 (320)
Q Consensus 122 ~~~~~~ 127 (320)
.|+..-
T Consensus 91 l~Dp~W 96 (153)
T TIGR02561 91 KGDAEW 96 (153)
T ss_pred cCChHH
Confidence 776653
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.73 E-value=0.22 Score=44.63 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
+...|..-....-+.+.+.+--..|.+++..+|+++.+|..-|.=.+..+. .+.|.+.+.++|+.+|+++..|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 444555554444455668899999999999999999999999888777776 889999999999999999987643
No 326
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.6 Score=38.47 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHhcCCCCHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN-KALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~p~~~~~~~~l 81 (320)
|.+--.|.-+-.++-..+ +..+-++++...++-+|.+-.+|..+-.+...+|++. .-+++.+.++..+.++-.+|-.+
T Consensus 74 pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR 153 (318)
T KOG0530|consen 74 PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR 153 (318)
T ss_pred cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHH
Confidence 444445555555555443 5677888899999999999999999999999999888 88899999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
-.+....+.++.-+.+....|+.+-.+-.+|...
T Consensus 154 qW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 154 QWVLRFFKDYEDELAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhccchhhee
Confidence 9999999999999999999998887777777653
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.68 E-value=2 Score=39.59 Aligned_cols=192 Identities=9% Similarity=0.010 Sum_probs=125.7
Q ss_pred HHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 17 FFKAGNYLKAAALYTQAIKQ-----DPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 17 ~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
+.......+.+..++..+.- .|- .-..|......-...|+++...-.|++++--.....+.|...+.-....
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS 344 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc
Confidence 33444556666677766642 232 3467888888888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914 89 EQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKDKKRAQEVENIR-SNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
|+..-|-..+.++.++ .|+.+.++..-+.+....|++..|..+++.. +..............+....|+......
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~--- 421 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY--- 421 (577)
T ss_pred CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH---
Confidence 9999999999998887 5667778888888888899999998775311 1111111111122223333333322211
Q ss_pred HHHHHHHHHHHhHhhccccChh--------HHhhhcChhHHHHhhhhhhccccCc
Q 020914 167 FVVETMETAVKSWHETSKVDAK--------VYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 167 ~a~~~~~~a~~~~~~~~~~~~~--------~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
...+-..+........+.+. .+...++.+.|...+..++++.|..
T Consensus 422 --~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 422 --KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred --HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 11111112112222222222 5566688889999999999988875
No 328
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=0.14 Score=46.23 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=75.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
+..-|.=-+..+....|+..|.++++.-|+....+.+++.++++. |+--.|+.....|++++|....+|+.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 333333334455678999999999999999999999999999885 56677889999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020914 121 LAKDKKRAQEVE 132 (320)
Q Consensus 121 ~~~~~~~A~~~~ 132 (320)
.++++.+|++..
T Consensus 457 el~r~~eal~~~ 468 (758)
T KOG1310|consen 457 ELTRYLEALSCH 468 (758)
T ss_pred HHhhHHHhhhhH
Confidence 999999998663
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.62 E-value=0.15 Score=28.08 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH--HHHhhCCCC
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQ--TALQYNPQS 108 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~--~al~~~p~~ 108 (320)
+.++.+|-.+...|++++|+..|+ -+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 568889999999999999999944 777777754
No 330
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.59 E-value=0.57 Score=33.58 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK-------QDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-------~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
++.++-.++..+...|+|++++..-.++|. ++.+. ..+.+++|.++..+|+.++|+..|+.+-++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 355677788889999999999998888884 34443 356778999999999999999999998664
No 331
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.51 E-value=3.1 Score=36.54 Aligned_cols=98 Identities=16% Similarity=0.049 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
.+-.....+..-.-.|+++.|.+-|+..+. +|+. .--+..+-.--..+|..+.|+.+-+++-..-|.-+.++...-..
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~ 197 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA 197 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 344556667778889999999999998775 4432 11233333334578999999999999999999999998888788
Q ss_pred HHHccCHHHHHHHHHHHHhh
Q 020914 85 LEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~ 104 (320)
....|+++.|++..+.....
T Consensus 198 r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHhcCChHHHHHHHHHHHHH
Confidence 88999999999998876654
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.31 E-value=0.067 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.043 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAF 98 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~ 98 (320)
+.+.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555554443
No 333
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=3.3 Score=40.92 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
+.+|..+|.+..+.|...+|++.|-+| +++..|...-++-.+.|.|++=+.++..|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 445555555555555555555555333 4444444444555555555555555544443
No 334
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.26 E-value=0.33 Score=40.74 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
..++..++..+...|+++.++..+++.+.++|-+..+|..+-..|...|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456777777777777777787888877888887777777777777777877777777776555
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.25 E-value=0.082 Score=26.67 Aligned_cols=24 Identities=17% Similarity=-0.121 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAE 65 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~ 65 (320)
.+.+.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666665543
No 336
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.24 E-value=1.8 Score=36.67 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=79.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhc----CC---CC------
Q 020914 17 FFKAGNYLKAAALYTQAIKQD----PSN----PTLFSNRAAAFLHLV-KLNKALADAETTISL----NP---QW------ 74 (320)
Q Consensus 17 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l----~p---~~------ 74 (320)
...+|+++.|..++.|+-... |+. +..+++.|......+ +++.|+..++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999986543 433 578999999999999 999999999999887 21 11
Q ss_pred -HHHHHHHHHHHHHccCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 75 -EKGYFRKGCILEAMEQYD---DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 75 -~~~~~~lg~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
..++..++.+|...+.++ +|....+.+-.-.|+.+..+..--.+....++.+.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~ 140 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEY 140 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHH
Confidence 346778899998887765 455555555556787777764444444333334443
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.22 E-value=0.88 Score=35.63 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
.++..+|..|.+.|+.++|++.|.++...... ..+.++.+-.+....+++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555555555555555555555554443322 123444444444555555555555444443
No 338
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.03 E-value=0.47 Score=39.85 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
...++..++..+...|+++.+++.+++.+..+|.+..+|..+=..|...|+...|+..|++.-+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999887664
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.00 E-value=0.097 Score=43.96 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN-RAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
|.++..|..-+......|-|.+--..|.+++..+|.+++.|.. -+.-+...++.+.+...|.++|.++|+++..|+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3455666666666667788888999999999999999999987 5666778899999999999999999999988764
No 340
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=7.5 Score=38.64 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCC-HH------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--PQW-EK------ 76 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~-~~------ 76 (320)
.+..|-.+|...++.|...+|++.|-+| +++..|...-.+-.+.|+|++-+.++.-|-+.- |.- ..
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 4568999999999999999999999765 567888888888899999999999887765532 211 11
Q ss_pred ------------------HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 77 ------------------GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 77 ------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
-.-..|+-++..|.|+.|.-.|. +..-|..++..+..+|+++.|.+.
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12233444555566666655553 344566777777777777777654
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.49 E-value=0.39 Score=40.12 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 45 SNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 45 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.|++.|++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 33455555566666666666666666666666666666666666666666555554
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.39 E-value=0.49 Score=37.47 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHHHHHHHH
Q 020914 56 KLNKALADAETTISLNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ----SAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 56 ~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A 128 (320)
.-++|..-|-++=. .| +.+...+.+|..|. ..+.++|+..+.++|++.+. ++++...|+.++...++++.|
T Consensus 121 ~d~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33566655543322 22 45667777776665 56777777777777777543 367777777777777777766
No 343
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.36 E-value=0.4 Score=40.41 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
|+.+|.+|+.+.|.+...|+.+|.+....|+.=.|+=+|-+++-...-.+.+.-++..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999997655568888888888877
No 344
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.35 E-value=1.1 Score=40.04 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=36.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 48 AAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 48 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
|..++..|+|.++..+..-..++.| .+.++..+|.|++...+|++|..++..
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3445566777777777777777777 777777777777777777777776654
No 345
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.29 E-value=0.5 Score=41.55 Aligned_cols=86 Identities=15% Similarity=-0.007 Sum_probs=69.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC--------C-----C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 45 SNRAAAFLHLVKLNKALADAETTISLNP--------Q-----W-----EKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 45 ~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~-----~-----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
..=|..++++++|..|..-|..+|++.. . + ..+--.+..||..+++.+-|+..-.+.+-++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 3346667788888888888888888732 1 1 12345688999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 107 QSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
.+..-+...+.+...+.+|.+|-.
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988843
No 346
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.04 E-value=0.93 Score=40.67 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=78.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
.....|+.-.|-.-...++.-.|.+|......+.++..+|.|+.|...+.-+=..-..-..+...+-...+.+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 44567888888888888999999999999999999999999999988886655444444445555556667788888887
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 96 SAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 96 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
..-.-.|.-.-+++++....+.....+|-++++
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 777777665555555433333333334444444
No 347
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=1.2 Score=39.04 Aligned_cols=114 Identities=14% Similarity=0.099 Sum_probs=92.3
Q ss_pred cchHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----HHHHHHHHHHHHhcCCCCH
Q 020914 2 AAEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----LNKALADAETTISLNPQWE 75 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----~~~A~~~~~~al~l~p~~~ 75 (320)
.+|+.--+|+.+..++.+.+ ++..=+...+++++.+|.+..+|..+=.+...... ..+-+++.+++|.-++.|.
T Consensus 104 ~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 104 VNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred hCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhh
Confidence 36888899999999999876 47889999999999999998888777666555443 5677899999999999999
Q ss_pred HHHHHHHHHHHH------ccC------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 76 KGYFRKGCILEA------MEQ------YDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 76 ~~~~~lg~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.+|+.+..++.. .|. ...-++.-..|+-.+|++..+|+..
T Consensus 184 saWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 184 SAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred hHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 999999988873 231 2345677777888899999998764
No 348
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.97 E-value=0.35 Score=25.34 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
|+.+.|...|++++...|.++..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456677777777777777777777665543
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.91 E-value=9.8 Score=37.07 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----C--H
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----W--E 75 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~--~ 75 (320)
+...-..|.+....|+++.|++..+.+++.-|.+ ..++...|.+..-.|++++|.....++.++... . .
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3455567889999999999999999999887765 577899999999999999999999999887432 2 3
Q ss_pred HHHHHHHHHHHHccC--HHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH--HH
Q 020914 76 KGYFRKGCILEAMEQ--YDDALSAFQTALQ----YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD--EF 147 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~--~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~ 147 (320)
.+....+.++...|+ +.+....|...-. ..|-+.......+.++...-+.+.+..- .+..+....... +.
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~e--ar~~~~~~~~~~~~~~ 615 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAE--ARLGIEVGSVYTPQPL 615 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHH--hhhcchhhhhcccchh
Confidence 455667888899993 3333333333222 2343333333333333222223333221 122222211110 00
Q ss_pred -HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------HHhhhcChhHHHHhhhhh
Q 020914 148 -KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPI 206 (320)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~lg~~~~A~~~~~~a 206 (320)
.-.....+.......|+.+.+....++......... .++. .+...|+...+.....+.
T Consensus 616 ~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 616 LSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111112445555566666666666665554444332 1111 455667777777666553
No 350
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.57 E-value=9.8 Score=36.19 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
..++.++|..+..+..|++|.++|.+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777777777777777777777654
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.21 E-value=0.64 Score=38.91 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.+...+..+...|.+.+|+++.++++.++|-+...+..+-.++..+|+--.|+..|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34556778889999999999999999999999999999999999999988888888764
No 352
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=6.5 Score=33.10 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHccCHH----------HHHHH---------
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDP--------SNPTLFSNRAAAFLHLVKLN----------KALAD--------- 63 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~----------~A~~~--------- 63 (320)
..+++-....+++++|+..|.+.+...- ....+...++..|...|++. ++...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 6778888999999999999999986621 12467888999999999874 22222
Q ss_pred HHHHHhcCCCCHH---------------------------HHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHH
Q 020914 64 AETTISLNPQWEK---------------------------GYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAE 110 (320)
Q Consensus 64 ~~~al~l~p~~~~---------------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 110 (320)
.+..++..|..++ .-..+..++++.|+|.+|+......+.- .|.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 2333444443211 1233556677888888888766655532 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHh
Q 020914 111 VSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ-HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWH 180 (320)
Q Consensus 111 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 180 (320)
++..=+.++...++..++............+. -......++....|...+...++.-|-.+|=+|.+-|.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 55555566666666665544332222111111 11223444555556667766677777777777776664
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.96 E-value=12 Score=35.78 Aligned_cols=83 Identities=18% Similarity=0.101 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHh-cCCC---CHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHccCHH
Q 020914 24 LKAAALYTQAIK-QDPS---NPTLFSNRAAAFL-HLVKLNKALADAETTISLNP--QWE----KGYFRKGCILEAMEQYD 92 (320)
Q Consensus 24 ~~A~~~~~~al~-~~p~---~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p--~~~----~~~~~lg~~~~~~~~~~ 92 (320)
..|+.|++-+++ ..+. .+.++..+|.++. ...+.+.|..++++++.+.. +.. .+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456777776663 2211 2466777777777 67788888888888877653 332 23455677777777666
Q ss_pred HHHHHHHHHHhhCCC
Q 020914 93 DALSAFQTALQYNPQ 107 (320)
Q Consensus 93 ~A~~~~~~al~~~p~ 107 (320)
|....+++++...+
T Consensus 118 -a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 118 -ALKNLDKAIEDSET 131 (608)
T ss_pred -HHHHHHHHHHHHhc
Confidence 88888887776544
No 354
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.86 E-value=1.3 Score=29.04 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
.+..+..++..+-..|++++|+.+|+++++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666667777777777777777665543
No 355
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=91.78 E-value=0.78 Score=34.32 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
........+......|+++-|....+.++..+|++..+...++.++..+|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356666777777778888888888888888888888888888888877765543
No 356
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.74 E-value=11 Score=35.95 Aligned_cols=109 Identities=16% Similarity=0.001 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---
Q 020914 4 EAEEMSLKDKGNEFF-KAGNYLKAAALYTQAIKQDPS--N----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--- 73 (320)
Q Consensus 4 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--- 73 (320)
-.++...+.+|.+++ ...++++|..++++++.+... . ..+-+.++.++.+.+... |+..++++|+...+
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~ 134 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGH 134 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCc
Confidence 367888999999999 678999999999999877643 2 244566789998888877 99999999987544
Q ss_pred C-HHHHHHH--HHHHHHccCHHHHHHHHHHHHhhC--CCCHHHHH
Q 020914 74 W-EKGYFRK--GCILEAMEQYDDALSAFQTALQYN--PQSAEVSR 113 (320)
Q Consensus 74 ~-~~~~~~l--g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 113 (320)
. +...+.+ ...+...+++..|++.++...... +.++.+..
T Consensus 135 ~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 135 SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 2 2222222 333333489999999999999876 46655433
No 357
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.48 E-value=0.47 Score=42.04 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISLN---------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+...+..++..+|+|..|++.++.. .++ +-+...+|..|-+|+.+++|.+|++.|...|-.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999999987543 222 234567899999999999999999999988753
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.37 E-value=1 Score=35.74 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHH
Q 020914 23 YLKAAALYTQAIKQDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ----WEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~----~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
-++|...|-++= -.| +++++.+.+|..|. ..+.++|+..+.++|++.+. +++.+..++.++..+|+++.|-
T Consensus 122 d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 367887776543 333 46899999998776 67889999999999998653 5899999999999999999984
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.12 E-value=3.9 Score=43.91 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC---------
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQ--------- 73 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~--------- 73 (320)
..-++.|.+.|.+....|+++.|-...-+|.+.. -+.++..+|...+..|+-..|+..+++.+.++ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 4567899999999999999999999999998877 47999999999999999999999999999663 33
Q ss_pred -C------HHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 74 -W------EKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 74 -~------~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
. ..+.+..+.-....++++ +-++.|+.+.++.|.....++.+|..+
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 1 123444444455566643 456899999999998877777777443
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.75 E-value=0.74 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRA 48 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg 48 (320)
+++.|...|++++...|.++.+|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555555443
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.61 E-value=0.84 Score=40.93 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|..+.-....+.+....|.|+.|...+.-+-..-.....+..-+-.....+|++++|...-.-.+.-.-++++....-+
T Consensus 319 ~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa 398 (831)
T PRK15180 319 QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAA 398 (831)
T ss_pred CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeec
Confidence 34555566677889999999999999887665554444566666667788999999999998888877767777776666
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
..-..+|-+++|....++.+.++|..
T Consensus 399 ~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 399 GSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred ccHHHHhHHHHHHHHHHHHhccCChh
Confidence 66778889999999999999998864
No 362
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.55 E-value=9.8 Score=32.27 Aligned_cols=106 Identities=13% Similarity=0.058 Sum_probs=81.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----KLNKALADAETTISLNPQWEKGYFRKGCILEA- 87 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~- 87 (320)
.+......+++..|...+.++-... ++.+...+|.+|..-. +..+|+..|+ ......++.+.+.+|.+|..
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcC
Confidence 3444557789999999999887633 3478888888887653 6789999999 44556788899999999987
Q ss_pred ---ccCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHH
Q 020914 88 ---MEQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQLA 122 (320)
Q Consensus 88 ---~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~ 122 (320)
..++.+|...|+++.+..-.. ..+...++.++..-
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g 161 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSG 161 (292)
T ss_pred CCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcC
Confidence 559999999999999985544 34477777776553
No 363
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.31 E-value=15 Score=33.92 Aligned_cols=117 Identities=12% Similarity=-0.027 Sum_probs=84.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR- 80 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~- 80 (320)
.+|.+..+|+.+-..+..+ .+++....|++.+...|..+.+|......-....+|+.-...|.++|..-= +.+.|..
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHH
Confidence 4788999999998777766 999999999999999999999999999999999999999999999986422 1333322
Q ss_pred HHHHHHHccCHHHH----HHHHHHHHh---hCCCCHHHHHHHHHHHH
Q 020914 81 KGCILEAMEQYDDA----LSAFQTALQ---YNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 81 lg~~~~~~~~~~~A----~~~~~~al~---~~p~~~~~~~~l~~~~~ 120 (320)
+.-+-...|+...+ .+.|+-++. .++.....|...+..+.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~ 139 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLE 139 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 12222233333332 344444444 35666677776665543
No 364
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=90.20 E-value=11 Score=32.41 Aligned_cols=96 Identities=9% Similarity=-0.004 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN----------------- 71 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----------------- 71 (320)
.-+..-....+..+..+-|+.-..|++++|..+.++..++.- ...-..+|...+++|++.-
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 344455566778888888999999999999999999888753 2233456777777776541
Q ss_pred ------CCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 72 ------PQWEKG--YFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 72 ------p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
..+... -..++.|-.++|+..+|++.|+...+-.|
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 012233 34578999999999999999998877766
No 365
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=90.03 E-value=0.74 Score=40.86 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD---------PSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
++..+.+++.-.|+|..|++..+- |+++ +-+...++..|-+|..+++|.+|+..|..+|.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999764 3332 22467899999999999999999999998875
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.85 E-value=34 Score=37.44 Aligned_cols=86 Identities=21% Similarity=0.190 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHc
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG-CILEAM 88 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg-~~~~~~ 88 (320)
+.+.-...-..|++..|..+|++++..+|+....+...-.+-...|.++..+...+-.....++...-|+.+| .+-.++
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 3444445567799999999999999999998877777777777888888888877766666665555555544 333555
Q ss_pred cCHHHHH
Q 020914 89 EQYDDAL 95 (320)
Q Consensus 89 ~~~~~A~ 95 (320)
++++.-.
T Consensus 1532 ~qwD~~e 1538 (2382)
T KOG0890|consen 1532 SQWDLLE 1538 (2382)
T ss_pred cchhhhh
Confidence 5555433
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=89.67 E-value=4 Score=33.92 Aligned_cols=55 Identities=20% Similarity=0.159 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHH
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQ------WEKGYFRKGCILEAMEQYDDALSA 97 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~~~~~~A~~~ 97 (320)
+...+|.-|...|+|++|+..|+.+...... ...+...+-.|+..+|+.++.+..
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3445555555555555555555555433221 123344444555555555554443
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=18 Score=33.66 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C-----------
Q 020914 20 AGNYLKAAALYTQAIKQ------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----N----------- 71 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~----------- 71 (320)
...|++|...|.-|... .|.+...+..++.++..+|+.+-|....+++|-- .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888877654 3556789999999999999998888877777632 2
Q ss_pred -----CCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-HHHHHHHHHHH
Q 020914 72 -----PQWEK---GYFRKGCILEAMEQYDDALSAFQTALQYNPQ-SAEVSRKIKRVSQ-LAKDKKRAQEV 131 (320)
Q Consensus 72 -----p~~~~---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~-~~~~~~~A~~~ 131 (320)
|.|-. +.+..-.-+.+.|-+.-|.+..+-.+.++|. ++.+...+-.++. ...+|+--+++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~ 400 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL 400 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence 22222 3344445566789999999999999999998 7766555554443 44555555544
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.14 E-value=4.2 Score=35.87 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------C-CCHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS---NPTLFSNRAAAFLHLVKLNKALADAETTISLN-------P-QWEK 76 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p-~~~~ 76 (320)
.++-.+|..|...|+++.|+.+|.++-..-.+ ....+.+.-.+-..+|+|..-..+..+|.+-- + -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 57888999999999999999999996554332 25778888888889999998888888887641 0 0234
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIK 116 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 116 (320)
+...-|.+...+++|..|.++|-.+..- .|.+..++..+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc 278 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC 278 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH
Confidence 5566677788888999999988766542 455555555543
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.13 E-value=6.4 Score=39.26 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 8 MSLKDKGNEFFKA----G---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 8 ~~~~~~g~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
++.+..|..+..+ | .+++|+..|++. .-.|.-|-=|.+.|.+|.++|+|++-+++|.-|++..|++|..-..
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 513 EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence 5677778777643 2 477888888763 3456667779999999999999999999999999999998865444
Q ss_pred HHHHHHHc-----cCHHHHHHHHHHHHhhCCCCHH
Q 020914 81 KGCILEAM-----EQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 81 lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~~ 110 (320)
.-.+-.++ .+-..|....--++.+-|....
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 592 RDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 43333322 1233455555666777776543
No 371
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.10 E-value=2 Score=32.19 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
-.+.....+.-.+..|++.-|.+....++..+|++..+....+.++..+|...+.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3455566777778889999999999999999999999999999988888776553
No 372
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.42 Score=40.99 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 89 (320)
.+.+.+-+..+.+..|+..-..+++.++....+++.++..+..+.++++|++.+..+....|++......+..+-....
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 3456677778888888888888888899999999999999999999999999999999999999877665554444333
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=89.01 E-value=4.2 Score=26.63 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 92 DDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 92 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.+|++.+.++++..|+++........+.
T Consensus 30 ~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 30 KKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 3344455555666777776554444443
No 374
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.95 E-value=2.2 Score=40.24 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
...+++.+.|..+.....|++|.++|.+.- -.-+...|++++++|++- +.....-|++.+.+-.+|+.
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~m 861 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGEL----EVLARTLPEDSELLPVMADM 861 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHHH
Confidence 345789999999999999999999998752 234567788888887654 44455568888899999999
Q ss_pred HHHccCHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQT 100 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~ 100 (320)
+...|.-++|+++|-+
T Consensus 862 f~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 862 FTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhhchHHHHHHHHHh
Confidence 9999999999988865
No 375
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.87 E-value=4.4 Score=34.79 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
+|..-...|+-...+.| ++.+-.|++.+..+..=.+.++...+-...- -.++...+-.+|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 45544444554444444 4666677777777777777777777665554 23456677889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHH
Q 020914 100 TALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 100 ~al~~~p~~~~~~~~l~~ 117 (320)
+++.+.++..+..+....
T Consensus 390 rAi~La~~~aer~~l~~r 407 (415)
T COG4941 390 RAIALARNAAERAFLRQR 407 (415)
T ss_pred HHHHhcCChHHHHHHHHH
Confidence 999999988876655443
No 376
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.85 E-value=2.9 Score=30.21 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHH----HHh
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAET----TIS 69 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~----al~ 69 (320)
.+..+|+..++.+++-.++-.|++|+.+..+- .....++|..++..|+.+=.+.+++- ++.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 35678888999999999999999998652211 34566777777777777777777643 344
Q ss_pred cCCCC
Q 020914 70 LNPQW 74 (320)
Q Consensus 70 l~p~~ 74 (320)
+-|..
T Consensus 83 LiPQC 87 (140)
T PF10952_consen 83 LIPQC 87 (140)
T ss_pred hccCC
Confidence 55543
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=5.9 Score=34.97 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC--CCHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DP-SNPTLFSNRAAAFLHLVKLNKALADAETTISL--NP--QWEK 76 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p--~~~~ 76 (320)
+..|+-...++-..|+...-...+..-+.. +. ..+...+.+=.+|..-+.|+.|-....++.-- .. ..+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 455667777777778766555555444432 22 22456777888999999999998887776522 12 2355
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
..+.+|.+..-+++|..|.++|-+|+...|.+.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 677899999999999999999999999999853
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.57 E-value=19 Score=32.81 Aligned_cols=85 Identities=13% Similarity=-0.010 Sum_probs=45.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHH-------HHHHHhc-----------CCCCHH
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALAD-------AETTISL-----------NPQWEK 76 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l-----------~p~~~~ 76 (320)
.....|+++++....... ++-|.- ......++..+.+.|-++.|+.. |+-||++ ..+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~ 348 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE 348 (443)
T ss_dssp HHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred HHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence 334556666655554311 111221 23344455555555555555443 2222222 235788
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTA 101 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~a 101 (320)
.|..+|......|+++-|.++|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 9999999999999999999999875
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.15 E-value=22 Score=33.06 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=72.7
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCC----------------CH---HHHHHHHHHHHHccCH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIK-----QDPS----------------NP---TLFSNRAAAFLHLVKL 57 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~----------------~~---~~~~~lg~~~~~~g~~ 57 (320)
++|=+.+.+..++.+...+|+.+.|....+++|= ..|. +- -+++..-..+.+.|.+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 5788999999999999999999999999888872 2222 21 2334444566678999
Q ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHH-HHccCHHHHHHHHHHH
Q 020914 58 NKALADAETTISLNPQ-WEKGYFRKGCIL-EAMEQYDDALSAFQTA 101 (320)
Q Consensus 58 ~~A~~~~~~al~l~p~-~~~~~~~lg~~~-~~~~~~~~A~~~~~~a 101 (320)
.-|.+.+.-.++++|. +|-+...+-++| .+..+|+==|+.++..
T Consensus 359 rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998 776655555444 3445566555555544
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.93 E-value=5.3 Score=32.25 Aligned_cols=59 Identities=20% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
.+.+.+..++|+...+.-++-+|.+......+-..+.-.|+|++|..-++-+-.+.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34555566666666666666666666555555555666666666666666666666654
No 381
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.84 E-value=15 Score=34.46 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=70.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDA 94 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A 94 (320)
..+-++...+.+....+.-+.-....+......+..+...|..++|-.+|++.+..+|+ .+++..+.-+.+.|-..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDA 93 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHH
Confidence 33445666777777777655555556778888999999999999999999999999998 7888889999999999888
Q ss_pred HHHHHHHHhhCCC
Q 020914 95 LSAFQTALQYNPQ 107 (320)
Q Consensus 95 ~~~~~~al~~~p~ 107 (320)
...++ ++.|.
T Consensus 94 ~~~~~---~~~~~ 103 (578)
T PRK15490 94 QLILK---KVSNG 103 (578)
T ss_pred HHHHH---HhCcc
Confidence 88877 45555
No 382
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.57 E-value=28 Score=33.59 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020914 112 SRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 112 ~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
+...|.++....++++|.+.+.
T Consensus 664 ydkagdlfeki~d~dkale~fk 685 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFK 685 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHH
Confidence 4444555555556666655543
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.02 E-value=19 Score=32.09 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHH--HHHHHHHccCHHHHHHHHHHHHhc
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT--LFSN--RAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~--lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
--...+..++..++|..|...+......-|.... .+.. .|..++..-++.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5567788899999999999999999875333333 3333 466677888999999999988765
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.75 E-value=1.5 Score=25.43 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
+.+|.+|..+|+.+.|.+.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.49 E-value=8.7 Score=31.05 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=55.8
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 49 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
.-+.+.+..++|+...+.-++-+|.+......+-+++.-.|++++|...++-+-++.|++..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34667788999999999999999999999999999999999999999999999999998754
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.66 E-value=1.8 Score=25.07 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 45 SNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 45 ~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
+.+|.+|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999985
No 387
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.54 E-value=2.8 Score=26.89 Aligned_cols=28 Identities=43% Similarity=0.534 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAI 34 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al 34 (320)
+..+...|...=..|++++|+.+|.+++
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555566666555555554
No 388
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.50 E-value=2.3 Score=27.99 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
.+..+..+|...=..|+|++|+.+|..+++
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555666666666666666665554
No 389
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.32 E-value=2.6 Score=27.82 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
+..+...|...=..|+|++|+.+|.++
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344444444444455555554444443
No 390
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.27 E-value=1.7 Score=27.87 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=11.1
Q ss_pred HHccCHHHHHHHHHHHHh
Q 020914 86 EAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~ 103 (320)
-..|++++|+.+|.+++.
T Consensus 16 D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHTTSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 356666666666666555
No 391
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.06 E-value=1.9 Score=28.44 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=10.3
Q ss_pred HccCHHHHHHHHHHHHh
Q 020914 87 AMEQYDDALSAFQTALQ 103 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~ 103 (320)
..|+|++|+.+|+.+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45666666666666555
No 392
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=84.86 E-value=2 Score=28.48 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 55 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+.|++|..+.++||..+ ..|+.++|+.+|++++..
T Consensus 3 ~~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHHH
Confidence 34677777777777665 447778888888877764
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.59 E-value=7 Score=32.44 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
......+|..++..|+|++|+++|+.+...... ...+...+-.|+..+|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345678999999999999999999999755332 25778889999999999999888765544
No 394
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=83.29 E-value=11 Score=33.27 Aligned_cols=42 Identities=29% Similarity=0.202 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 020914 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADA 64 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 64 (320)
.-+|+..++.++..+|.+..+...+..+|..+|-.+.|...|
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~ 240 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY 240 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555555555555555555555555555555
No 395
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.02 E-value=2.4 Score=34.58 Aligned_cols=92 Identities=22% Similarity=0.169 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcC---CCC---------HHHHHHHHHHHHHccCHH-HH-HHHHHHHHhc--CCCC--HHHH
Q 020914 17 FFKAGNYLKAAALYTQAIKQD---PSN---------PTLFSNRAAAFLHLVKLN-KA-LADAETTISL--NPQW--EKGY 78 (320)
Q Consensus 17 ~~~~g~~~~A~~~~~~al~~~---p~~---------~~~~~~lg~~~~~~g~~~-~A-~~~~~~al~l--~p~~--~~~~ 78 (320)
.+..|+|+.|++....||+.+ |+. ++-...-+..-...|+.- -. ...+.....- -|+. ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 356799999999999999875 322 122333444444455421 11 1112222110 1333 3456
Q ss_pred HHHHHHHH---------HccCHHHHHHHHHHHHhhCCCC
Q 020914 79 FRKGCILE---------AMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 79 ~~lg~~~~---------~~~~~~~A~~~~~~al~~~p~~ 108 (320)
-..|..+. ..++...|+.++++|+.++|..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 66677773 4578889999999999999864
No 396
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.47 E-value=3.2 Score=27.21 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.++|+....+|+.-| ..|+|++|+..|..+++.
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHH
Confidence 345555555555444 567788888888777764
No 397
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.77 E-value=35 Score=31.54 Aligned_cols=65 Identities=8% Similarity=0.043 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCC
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISL---NPQ----WEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQ 107 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~----~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~ 107 (320)
-+..+|.++..+|+...|..+|..+++. ... .|.++|.+|..+..++. ..+|...+.+|-....+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 3566899999999999999999888732 111 36789999999999988 99999999988776543
No 398
>PF12854 PPR_1: PPR repeat
Probab=81.15 E-value=5.4 Score=21.40 Aligned_cols=26 Identities=4% Similarity=0.116 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAET 66 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 66 (320)
...|..+-..|.+.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44555555555555666655555543
No 399
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.12 E-value=9.8 Score=33.97 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ-----------DPSNPTLFSNRAAAFLHLVKLN----------KALADAETT 67 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~a 67 (320)
.++.+|...+....|.+|+.++-.|=+. -.+.+-.-..+.+||+.+.+.. -|...|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 5778889999999999999887766433 3344556667788999887642 333333332
Q ss_pred H--------hcC-CCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 68 I--------SLN-PQWE------KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 68 l--------~l~-p~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
- .+. |..+ ..+..-|.+.+++|+-++|.++++.+...
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 111 2222 34566699999999999999999998764
No 400
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.11 E-value=46 Score=30.19 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 29 LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 29 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
-++.-|+-+|++...|+.+-.-|-.+|.+++-.+.|++...-.|-.+.+|...-.--...++|..-...|.++|...-
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 455567778888888888888888888888888888888888887777775544333445677777777777776543
No 401
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=79.86 E-value=63 Score=31.60 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---ccCHHHHHHH
Q 020914 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA---MEQYDDALSA 97 (320)
Q Consensus 21 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~---~~~~~~A~~~ 97 (320)
|.-++=+..++.-+.+++.....+..+-.+++..|+.++-...-.++.++.|.++..|.....-... .+.-.++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 4455667777777888998899999999999999999998888888889999999888876544332 3667788889
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q 020914 98 FQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 98 ~~~al~~~p~~~~~~~~l~~~~ 119 (320)
|++++.- -.+...|...+...
T Consensus 173 ~ekal~d-y~~v~iw~e~~~y~ 193 (881)
T KOG0128|consen 173 FEKALGD-YNSVPIWEEVVNYL 193 (881)
T ss_pred HHHHhcc-cccchHHHHHHHHH
Confidence 9999873 44556665555443
No 402
>PF12854 PPR_1: PPR repeat
Probab=79.79 E-value=5.2 Score=21.46 Aligned_cols=27 Identities=15% Similarity=-0.066 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456788888999999999999999875
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.77 E-value=51 Score=30.48 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
+...+.........|.++......+..+...|+.+.|+..++.++. +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344444555567898999999999999999998888888888887 332 3457788999999999999999998
Q ss_pred HHHhhCCCCHHHH
Q 020914 100 TALQYNPQSAEVS 112 (320)
Q Consensus 100 ~al~~~p~~~~~~ 112 (320)
...+.+.=..-.|
T Consensus 328 ~L~desdWS~a~Y 340 (546)
T KOG3783|consen 328 LLRDESDWSHAFY 340 (546)
T ss_pred HHHhhhhhhHHHH
Confidence 8877665443333
No 404
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=79.25 E-value=30 Score=29.24 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=78.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH---HccCH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPS--NPTLFSNRAAAFL---HLVKL----NKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~---~~g~~----~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
...++..++|++=...+.+......+ ..+..+..+.... .+... ..-.+.++.=++-.|++..++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45678889999888888887644222 1121133332221 11111 134455555567799999999999988
Q ss_pred HHHcc----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAME----------------------QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 85 ~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+.... -.+.|...+.+|+.++|....+...+..+-...|..+--.++
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHH
Confidence 87541 356789999999999999999998888777777766655443
No 405
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.13 E-value=55 Score=32.09 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=41.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCC
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTIS-LNPQ 73 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~ 73 (320)
-..+++..-|+-|+...+. ...+++. .+.+...|.-++..|++++|...|-++|. ++|.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 3556666777777776654 2333333 57788889999999999999999988875 4554
No 406
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.74 E-value=24 Score=26.05 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAE 65 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 65 (320)
.+...+.....+.+++..+..++.++..+..+..+|... +.++.++.++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 334567899999999999999888888999999998765 4466667766
No 407
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=78.74 E-value=17 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV 55 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 55 (320)
.+......|...+..|++..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34455566666666666666666666665554333333333344433333
No 408
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.22 E-value=28 Score=32.71 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-
Q 020914 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY- 104 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 104 (320)
...+.++||++.++ +.-.+. +..++|+++.|.+...+ .++..=|-.||.+....+++..|.++|.++-..
T Consensus 626 ~~g~~e~AL~~s~D-~d~rFe---lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 626 SQGMKEQALELSTD-PDQRFE---LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred hccchHhhhhcCCC-hhhhhh---hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 33445555655553 222333 33467777777665433 366778999999999999999999999987654
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 105 -------NPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 105 -------~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
...+.+....++..-...|+..-|
T Consensus 697 ~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A 727 (794)
T KOG0276|consen 697 SLLLLYTSSGNAEGLAVLASLAKKQGKNNLA 727 (794)
T ss_pred hhhhhhhhcCChhHHHHHHHHHHhhcccchH
Confidence 223444444455444444444433
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.14 E-value=39 Score=28.34 Aligned_cols=95 Identities=15% Similarity=-0.014 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHhcC------CC
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLN-KALADAETTISLN------PQ 73 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~l~------p~ 73 (320)
..+.++.=+..+++.|++.-|.+...-.++. .|.+....-+++.++...+.-+ +-....+++++-. -.
T Consensus 9 AidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~G 88 (260)
T PF04190_consen 9 AIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT-
T ss_pred HHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCC
Confidence 3455666667777788887776665444432 3445555677777777775443 2334445555432 24
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
++..+..+|..|.+.|++.+|..+|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 688888899999999999888887753
No 410
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.04 E-value=58 Score=30.13 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-------------- 71 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------- 71 (320)
+--+++.++.+|... ..++-...+++.++.+=+++..-..++..|.+ ++-+++..+|.+++...
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWe 175 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWE 175 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHH
Confidence 345788899999988 44677888899999888888888888888777 88899999998887642
Q ss_pred ------CCCHHHHHH------------HHHH--------HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 72 ------PQWEKGYFR------------KGCI--------LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 72 ------p~~~~~~~~------------lg~~--------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
|++.+..+. +|.+ |....++++|++.....|+.+..+..+..++-..+
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 233222111 1222 33456889999999999999888887776665443
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.51 E-value=11 Score=29.79 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 58 NKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 58 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
+..++..++.++..| ++..+..++.++...|+.++|....+++..+.|.
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344455566666666 6677777788888888888888888888888883
No 412
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=77.29 E-value=53 Score=29.24 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=47.2
Q ss_pred cchHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHH--HHHHHHHHHccCHHHHHHHHHH
Q 020914 2 AAEAEEMSLKD--KGNEFFKAGNYLKAAALYTQAIKQDPSN-----PTLF--SNRAAAFLHLVKLNKALADAET 66 (320)
Q Consensus 2 ~~p~~a~~~~~--~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~--~~lg~~~~~~g~~~~A~~~~~~ 66 (320)
.+|-.+..... .+..++..++|..|...|..++...++. ...+ ...|..++..-++++|.+.+++
T Consensus 123 ~nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 123 SDPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35555655555 4558999999999999999999775422 2333 3455566778899999999985
No 413
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.15 E-value=16 Score=33.24 Aligned_cols=56 Identities=7% Similarity=-0.010 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101 (320)
Q Consensus 38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 101 (320)
.+++..|..+|......|+++-|..+|+++-. +-.+..+|...|+-+.=.+.-+.|
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 44688999999999999999999999988743 234555666666654444443333
No 414
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.12 E-value=21 Score=26.46 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAA-AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 21 g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
|+...-+.+|-+. +- ..=|..+|. +...+|+-++=-..+....+.+..++..+..+|.+|.++|+..+|-+.+.
T Consensus 70 ~NlKrVi~C~~~~---n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 70 GNLKRVIECYAKR---NK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp S-THHHHHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cchHHHHHHHHHh---cc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 5666666776542 11 122333333 34556666666666666666566678889999999999999999988888
Q ss_pred HHHhh
Q 020914 100 TALQY 104 (320)
Q Consensus 100 ~al~~ 104 (320)
+|=+.
T Consensus 145 ~ACek 149 (161)
T PF09205_consen 145 EACEK 149 (161)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87663
No 415
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=76.94 E-value=7.6 Score=25.40 Aligned_cols=28 Identities=39% Similarity=0.479 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAI 34 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al 34 (320)
+..+...|...-..|++++|+.+|.+++
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~ai 33 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHAL 33 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444445555555555554443
No 416
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.71 E-value=5.6 Score=26.08 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHHHHHhc
Q 020914 54 LVKLNKALADAETTISL 70 (320)
Q Consensus 54 ~g~~~~A~~~~~~al~l 70 (320)
.|+|++|+..|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555555555555554
No 417
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=76.19 E-value=8.1 Score=25.30 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
+...|...-..|++++|+.+|.++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a 34 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKA 34 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333444444444444333
No 418
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=75.23 E-value=6.9 Score=25.67 Aligned_cols=17 Identities=35% Similarity=0.317 Sum_probs=9.9
Q ss_pred HccCHHHHHHHHHHHHh
Q 020914 87 AMEQYDDALSAFQTALQ 103 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~ 103 (320)
..|++++|+..|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45666666666655554
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.08 E-value=15 Score=29.14 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914 31 TQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72 (320)
Q Consensus 31 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 72 (320)
++.+...| ++.++.+++.++..+|+.++|....+++..+.|
T Consensus 135 ~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 135 ERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33333334 344444445555555555555555555554444
No 420
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.84 E-value=38 Score=29.16 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS--------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 147 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 147 (320)
.....+|.+|.+.+++..|...+. ++..+... ...+..++.+|...++..+|..+....+.+........+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 457788999999999999987764 34443321 235778888888888888887765544443333334444
Q ss_pred HHHHhhhhcchhhhhhHHHHHHH
Q 020914 148 KSEMSEKYGAEECWKHVFSFVVE 170 (320)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~a~~ 170 (320)
..+.-..++.+....+.+-+|-.
T Consensus 183 qie~kvc~ARvlD~krkFlEAAq 205 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQ 205 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666655555444433
No 421
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=73.80 E-value=6.4 Score=19.92 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=11.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al 102 (320)
.+-.+|.+.|++++|.+.|++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 34444555555555555555443
No 422
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.67 E-value=41 Score=26.30 Aligned_cols=124 Identities=15% Similarity=0.020 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSN--PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGC 83 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~ 83 (320)
-+..+.-+...++.++|+.-|...-.-+-.. .-+....|.+....|+-..|+..|..+-.-.|-- --+...-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3455666777888899999888766554333 4567778888888999999999998877655421 234555677
Q ss_pred HHHHccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTAL-QYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
++...|-|++-..-.+..- .-+|--..+...||..-...|++..|...+.
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~ 191 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV 191 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence 7888888887655444322 2355556777888888888888888876654
No 423
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.55 E-value=70 Score=28.91 Aligned_cols=97 Identities=13% Similarity=-0.005 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCH--------------HHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKL--------------NKALADAETT 67 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~--------------~~A~~~~~~a 67 (320)
..+..+|+..+..|+|+-|...|+.+..-.-++ +.+....|.+....+.. +.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 356778999999999999999999887643222 33444556666666532 2333334331
Q ss_pred ----HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 68 ----ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 68 ----l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.....--..+....+.++...|.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111123445666677777788877777666665543
No 424
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=73.53 E-value=11 Score=24.64 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAI 34 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al 34 (320)
.+...|...-..|++++|+.+|..++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~ 33 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEAL 33 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444455555555444443
No 425
>PF13041 PPR_2: PPR repeat family
Probab=73.35 E-value=10 Score=22.16 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456777778889999999999999998875
No 426
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=73.17 E-value=89 Score=29.91 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ--------------DPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.|..++...+..=+++-|.+.|.++-.+ +... .--..+|..+...|++.+|...|.+.
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~-P~~iLlA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGET-PNDLLLADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC-chHHHHHHHHHhhhhHHHHHHHHHHc
Confidence 4677778888888888888888776332 1111 22345677778888888888887553
No 427
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.97 E-value=29 Score=25.76 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=65.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC------------------HHHHHHHHHHHH--HccCHHHHHHHHHHHHhcCC
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSN------------------PTLFSNRAAAFL--HLVKLNKALADAETTISLNP 72 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~lg~~~~--~~g~~~~A~~~~~~al~l~p 72 (320)
.+..+.-.|..++.++...+.+.-.+-. ...+-.+|..+- ..|+...-+.++-.. +.
T Consensus 8 eAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n~ 84 (161)
T PF09205_consen 8 EAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---NK 84 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T-
T ss_pred HHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---cc
Confidence 4566777888999999988887654432 123333444332 224556666666433 22
Q ss_pred CCHHHHHHHH-HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 73 QWEKGYFRKG-CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 73 ~~~~~~~~lg-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.+ =|..+| .++...|+-++=-+.+....+.+..+++....++..+...|...++.++.
T Consensus 85 ~s--e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 85 LS--EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp ----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hH--HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 22 233444 34556677776667777777666778999999999999999999998774
No 428
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=72.94 E-value=10 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAI 34 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al 34 (320)
..+...|...-..|+|++|+.+|..+|
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~al 33 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSAL 33 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 429
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=72.03 E-value=8.6 Score=25.14 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=9.0
Q ss_pred HccCHHHHHHHHHHHHh
Q 020914 87 AMEQYDDALSAFQTALQ 103 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~ 103 (320)
..|++++|+.+|..++.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555544
No 430
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=71.60 E-value=12 Score=20.00 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
.++.|...|++.+...|+ +..|...+..
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 467788888888887764 5666655543
No 431
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.48 E-value=29 Score=32.63 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
...++..++..+..+-.-|..++|-.+|++.+..+|+ +.++..+..+...|-...|...+. ++.|.-
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 104 (578)
T PRK15490 38 EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK---KVSNGV 104 (578)
T ss_pred cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH---HhCccH
Confidence 3456788999999999999999999999999999998 788889999999999888888877 445553
No 432
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=69.89 E-value=7.2 Score=25.60 Aligned_cols=15 Identities=13% Similarity=0.512 Sum_probs=8.7
Q ss_pred cCHHHHHHHHHHHHh
Q 020914 89 EQYDDALSAFQTALQ 103 (320)
Q Consensus 89 ~~~~~A~~~~~~al~ 103 (320)
|+|++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 556666655555554
No 433
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.85 E-value=76 Score=27.72 Aligned_cols=79 Identities=11% Similarity=0.045 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCCHH-HH--HHHHHHHHHccCHHHHHHHHHHH---HhcC---------------------------C
Q 020914 26 AAALYTQAIKQDPSNPT-LF--SNRAAAFLHLVKLNKALADAETT---ISLN---------------------------P 72 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~-~~--~~lg~~~~~~g~~~~A~~~~~~a---l~l~---------------------------p 72 (320)
+-..|+++.+.-|++.. ++ .+-|.+++..++|.+....+.-+ .+.+ |
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 34556677766665543 23 34588888888888776665433 2221 1
Q ss_pred CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 73 QW---EKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 73 ~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.. .-.++.+|.-|+..++++.|+.-|.++...
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 11 123566788888999999999999888764
No 434
>PF13041 PPR_2: PPR repeat family
Probab=69.70 E-value=15 Score=21.48 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4567788888899999999999999988875
No 435
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=69.67 E-value=28 Score=29.96 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 27 AALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NP--QWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 27 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
++.+++--...|+..++.+..|...+..|+|..|-.++-....+ +| ++..+.++.--.-.-+.+++-|++.+.+.-
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444445566666666666666666666666666554333222 22 223333332222233456666666665544
Q ss_pred h
Q 020914 103 Q 103 (320)
Q Consensus 103 ~ 103 (320)
+
T Consensus 195 e 195 (432)
T KOG2758|consen 195 E 195 (432)
T ss_pred H
Confidence 4
No 436
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.28 E-value=12 Score=24.50 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=6.5
Q ss_pred cCHHHHHHHHHHHHh
Q 020914 55 VKLNKALADAETTIS 69 (320)
Q Consensus 55 g~~~~A~~~~~~al~ 69 (320)
|+|++|+.+|..+|.
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 437
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=68.08 E-value=36 Score=26.84 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 5 AEEMSLKDKGNEFFK-AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH-----LVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
..+++...+|..+-. +.+|++|...|.+--.-+ ..+...+.+|.-+.. .++...|+..+..+-. -+.+.+-
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC 108 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQAC 108 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHH
Confidence 456677777776653 567888888887655433 356777777765542 3478899999988876 5678888
Q ss_pred HHHHHHHHHc-----c--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 79 FRKGCILEAM-----E--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 79 ~~lg~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
..+|.++..- + +.+.|.+++.++-.+ ++..+.+.|+..+.
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYM 155 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHh
Confidence 8889888753 2 367899999888665 45566666666553
No 438
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=67.67 E-value=16 Score=18.96 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHhcCCCCHHHHHHH
Q 020914 64 AETTISLNPQWEKGYFRK 81 (320)
Q Consensus 64 ~~~al~l~p~~~~~~~~l 81 (320)
...++..+|.+..+|..+
T Consensus 6 ~~~~l~~~pknys~W~yR 23 (31)
T PF01239_consen 6 TKKALEKDPKNYSAWNYR 23 (31)
T ss_dssp HHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHCcccccHHHHH
Confidence 334444444444444433
No 439
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=67.29 E-value=15 Score=19.33 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 020914 8 MSLKDKGNEFFKA----GNYLKAAALYTQAIK 35 (320)
Q Consensus 8 ~~~~~~g~~~~~~----g~~~~A~~~~~~al~ 35 (320)
.+.+.+|..+..- .+..+|+..|+++.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 3455556555432 255666666666554
No 440
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.44 E-value=16 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
.|+.|..+..+||..+. .|+.++|+..|++++.
T Consensus 4 ~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 45666666666665543 3555555555555554
No 441
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=66.02 E-value=13 Score=26.93 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS 39 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 39 (320)
..+|..+...|++++|..+|-+||...|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 45666667777777777777777766664
No 442
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.82 E-value=17 Score=18.69 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=9.7
Q ss_pred HHHHHHHccCHHHHHHHHHHH
Q 020914 47 RAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 47 lg~~~~~~g~~~~A~~~~~~a 67 (320)
+-.+|.+.|++++|...|.+.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444443
No 443
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.81 E-value=91 Score=27.15 Aligned_cols=40 Identities=13% Similarity=-0.130 Sum_probs=24.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 117 (320)
-+.+-+.-.+..+..+-++.-..||+++|+++.++..++.
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAE 226 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAE 226 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhh
Confidence 3444444555556666666666667777766666665553
No 444
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=65.43 E-value=20 Score=19.34 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHh
Q 020914 23 YLKAAALYTQAIK 35 (320)
Q Consensus 23 ~~~A~~~~~~al~ 35 (320)
+++|+..|++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5566666666554
No 445
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.10 E-value=1e+02 Score=29.79 Aligned_cols=57 Identities=9% Similarity=-0.074 Sum_probs=37.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 47 RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 47 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
....-...++++.+...+...-.-..+.....|-+|.++..+|+.++|...|+++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333444677777666666553332234566777888888788888888888888643
No 446
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.87 E-value=93 Score=26.92 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTI--SLNPQWEKGY 78 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~l~p~~~~~~ 78 (320)
....++.+|-..++|..|.+.+. ++.++.. -...+..+|..|...++..+|..+..++- ..+..|....
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 45667778888888887777664 2333321 13567778888888888888877776653 2344555554
Q ss_pred HHHH----HHHHHccCHHHHHHHHHHHH
Q 020914 79 FRKG----CILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 79 ~~lg----~~~~~~~~~~~A~~~~~~al 102 (320)
...- .++-..++|-+|.+.|-+..
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 33344566666666655443
No 447
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=64.45 E-value=18 Score=26.22 Aligned_cols=35 Identities=34% Similarity=0.413 Sum_probs=27.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
-..+|..+...|++++|..+|-+|+...|.-.+..
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 35578888899999999999999999988755443
No 448
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.97 E-value=46 Score=32.27 Aligned_cols=113 Identities=16% Similarity=0.155 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH---HccCHHHHHHHHHHHHhcC-CCCHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFL---HLVKLNKALADAETTISLN-PQWEKGY 78 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~---~~g~~~~A~~~~~~al~l~-p~~~~~~ 78 (320)
...++-..|....+|+.-++.-+. ++.-|+. ..+.+..+-++- +-|+-++|++..-.+++.. |-.++.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~ 281 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMY 281 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCcee
Confidence 344444555666677665555544 3333422 111112222222 2367889998888888765 4456677
Q ss_pred HHHHHHHHH---------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 79 FRKGCILEA---------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 79 ~~lg~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
..-|.+|.. .+..+.|++.|++|.+..|.... =++++.++...|
T Consensus 282 Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 282 CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 777777754 35677899999999999996533 234555544444
No 449
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=63.26 E-value=1.2e+02 Score=27.69 Aligned_cols=118 Identities=8% Similarity=-0.059 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.+.-+|+.+-..+-.+|.+++-.+.|++...-.|-.+.+|...-.--...+++......|.++|...-+ .+.|...-
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lYl 116 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLYL 116 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHHH
Confidence 78999999999999999999999999999999988888887776555455567888888888888864322 33443222
Q ss_pred HHHHHc-----c----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 83 CILEAM-----E----QYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 83 ~~~~~~-----~----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
..-.+. | ..-+|-+..-.+.-.+|.....|...+.....
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 211221 1 12234333333444688888888888776653
No 450
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=63.08 E-value=1e+02 Score=26.89 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CCC-HHHH
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIK----QD--PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN------PQW-EKGY 78 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~----~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~-~~~~ 78 (320)
.+...|+..++|.+|+......+. ++ +.-.+++..=..+|+.+.+..+|...+..|-... |.- +..=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 456788899999999998877763 22 2235677777888999999999998887775432 221 2233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.+-|.++..-.+|.-|-.+|-.|++-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 44577777778999999999999875
No 451
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=62.86 E-value=1.2e+02 Score=27.33 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK--QDP--SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
+-...-+-..|...+.|+.|-....++.- ... ..+...+.+|.+..-+++|..|.+++-+|+...|.+
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 44455566788888899999998888762 122 236678889999999999999999999999999974
No 452
>PF15469 Sec5: Exocyst complex component Sec5
Probab=61.85 E-value=69 Score=25.02 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
...++........++++|+..++|..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 345566666677777777776666554
No 453
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.92 E-value=76 Score=30.33 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQ 32 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~ 32 (320)
..++.++..+|+|.+|...|.+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHH
Confidence 3456667777777777777754
No 454
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.25 E-value=30 Score=30.25 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQD--------PSNPTLFSNRAAAFLHLVKLNKALADA 64 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 64 (320)
.....+...|+-.+.+++++.|...|..|..+. -.+..+++..|.+++.+++...++-..
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345678889999999999999999999998763 234678888888888888877665544
No 455
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=59.18 E-value=18 Score=31.98 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhh
Q 020914 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQ------------YDDALSAFQTALQY 104 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~ 104 (320)
..+|+.++++|.. .+.|..|..+|.++..+|+ |.+|.+.+.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 3455555555543 2334444444444444332 55666666666554
No 456
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.07 E-value=66 Score=28.02 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=50.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+++....+..-...++...+-...- -..+...+..+|..+.++|+-++|...|++++.+.++..+.-+.+..
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4444444544556666666554432 12345678889999999999999999999999999988776655543
No 457
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=58.48 E-value=1.6e+02 Score=27.47 Aligned_cols=86 Identities=10% Similarity=-0.090 Sum_probs=63.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
++-..-++.-......+.+.... +-.+++.++.||... ..++-...+++.++.+=++...-..++..|.. ++-..+.
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a 151 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAA 151 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHH
Confidence 33334444555556677776654 567888888888877 56777788888888888888888888888877 8888888
Q ss_pred HHHHHHHhh
Q 020914 96 SAFQTALQY 104 (320)
Q Consensus 96 ~~~~~al~~ 104 (320)
..|.+++..
T Consensus 152 ~~f~Ka~yr 160 (711)
T COG1747 152 EFFGKALYR 160 (711)
T ss_pred HHHHHHHHH
Confidence 899888864
No 458
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.38 E-value=29 Score=30.71 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
.-+|+..++.++..+|.+......+-.+|..+|-...|...|.
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466666666666666666666666666666666666666664
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.07 E-value=2e+02 Score=28.85 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------C--HHHHHHHHHHHHH----------c--cCHHHH--HH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------N--PTLFSNRAAAFLH----------L--VKLNKA--LA 62 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~--~~~~~~lg~~~~~----------~--g~~~~A--~~ 62 (320)
...-.+.|-.+...|++.+|+++|...|-.-|- - +.-+..++.-|.. + +..+.+ +.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 445677888889999999999999999854332 1 2223333322321 1 223344 33
Q ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 63 DAETTISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 63 ~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.|=.-..+.|-+-. ++..--.++++++++..|...-.+.+++.|..+.+-..
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~ 1123 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQA 1123 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHH
Confidence 34333455554433 33333467889999999999999999999987776543
No 460
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.05 E-value=1.1e+02 Score=25.31 Aligned_cols=59 Identities=8% Similarity=0.042 Sum_probs=32.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQW-EKGYFRKGCILEA-MEQYDDALSAFQTAL 102 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al 102 (320)
+..+|.+..+.|+|++.+.+..+++..+|+. ..=...++.+|.. .|....++..+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4556677777777777777777777776642 3334444444422 344444444444333
No 461
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=57.91 E-value=1.3e+02 Score=26.34 Aligned_cols=173 Identities=8% Similarity=0.063 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC--------HHHHHHHHHHHHHccCHHHHHH----------------
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSN--------PTLFSNRAAAFLHLVKLNKALA---------------- 62 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~~A~~---------------- 62 (320)
..+..+.......++++++..|.+.+.. .|.+ .....++|..|...|+..+-..
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3467777778888899999999998874 2222 3577889999999998753322
Q ss_pred ---HHHHHHhcCCCCH---------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhh----CC--
Q 020914 63 ---DAETTISLNPQWE---------------------------KGYFRKGCILEAMEQYDDALSAFQTALQY----NP-- 106 (320)
Q Consensus 63 ---~~~~al~l~p~~~---------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p-- 106 (320)
..+..+...+..+ ..-..+..+|...++|.+|+..-...++- +.
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 2222222222110 01234566778888888887766555542 11
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914 107 QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMV-QHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181 (320)
Q Consensus 107 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 181 (320)
.-.+++..=+.++..+.+..+|.....-......+ .-.......+....|..++...++.-+-.+|=+|.+-|..
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s 241 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS 241 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccc
Confidence 11223333344444555555554332211111111 1112234445555566666666677777777777766653
No 462
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=57.83 E-value=1.7e+02 Score=27.56 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=47.3
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHH
Q 020914 12 DKGNEFFKAG---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEKGYFRKGC 83 (320)
Q Consensus 12 ~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~ 83 (320)
.+-..++..| +|..|+-.+-..-++.|... -..++..|.+||.. +-.+.--|..+|-
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~---------------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg 326 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTPG---------------RPTPLELFNEAISSARTYYNNHHVYPYTYLGG 326 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT---------------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCCC---------------CCCHHHHHHHHHHHHHHHhcCCccccceehhh
Confidence 3344555555 57777777777777766421 23445555555543 2345667888899
Q ss_pred HHHHccCHHHHHHHHHHHHhh
Q 020914 84 ILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~ 104 (320)
.|++.++|.+|+...-.|-..
T Consensus 327 ~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 327 YYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777554
No 463
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=57.47 E-value=26 Score=18.03 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=14.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
|..+-.++.+.|+++.|...|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555566666666666555443
No 464
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.63 E-value=36 Score=23.71 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
-+..+-.+|.+|...|+.+.|...|+.--.+.|++....
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 456778889999999999999999988888888776544
No 465
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=55.94 E-value=28 Score=29.84 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFS 45 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 45 (320)
..|.+++..|...-+.|..-+|+..|..|+++.|+-...+.
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 35667777777777777777777777777777776544444
No 466
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.78 E-value=54 Score=27.69 Aligned_cols=89 Identities=9% Similarity=0.108 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHccCHHHHHHHH
Q 020914 27 AALYTQAIKQDPSNPTLFSNRAAAFLHL--VKLNKALADAETTISLNPQWEKGYFRKGCIL------EAMEQYDDALSAF 98 (320)
Q Consensus 27 ~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~------~~~~~~~~A~~~~ 98 (320)
+.....+++-+|.+-..|..+-.++-.- .++.--+...++.+..||.|..+|..+-.+. ..-..+....++-
T Consensus 94 ld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eyt 173 (328)
T COG5536 94 LDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYT 173 (328)
T ss_pred HHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhH
Confidence 4445555566666666666555555444 3455555555666666666555554443333 2222333334444
Q ss_pred HHHHhhCCCCHHHHHHH
Q 020914 99 QTALQYNPQSAEVSRKI 115 (320)
Q Consensus 99 ~~al~~~p~~~~~~~~l 115 (320)
..++..++.+..+|...
T Consensus 174 t~~I~tdi~N~SaW~~r 190 (328)
T COG5536 174 TSLIETDIYNNSAWHHR 190 (328)
T ss_pred HHHHhhCCCChHHHHHH
Confidence 44555566665555544
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.60 E-value=68 Score=23.43 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=36.9
Q ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 59 KALADAETTIS--LNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 59 ~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
.+.+.|..... +.-..+..|...|..+...|++++|.+.|++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 77788877765 456789999999999999999999999999875
No 468
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=55.11 E-value=91 Score=26.42 Aligned_cols=68 Identities=15% Similarity=0.049 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLV----------------------KLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
-.+.++.=++..|++..++..+|..+.... -.+.|...+.+|+.++|..+.++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 455566667789999888888887776542 2478999999999999999999988888
Q ss_pred HHHHccCHHH
Q 020914 84 ILEAMEQYDD 93 (320)
Q Consensus 84 ~~~~~~~~~~ 93 (320)
+-...|..+=
T Consensus 142 ~s~~fgeP~W 151 (277)
T PF13226_consen 142 ISAYFGEPDW 151 (277)
T ss_pred HHhhcCCchH
Confidence 8777777653
No 469
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.89 E-value=1.5e+02 Score=26.03 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---cC---------------------------CCC---HHHHHHHHHHHHHccCH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIK---QD---------------------------PSN---PTLFSNRAAAFLHLVKL 57 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~---~~---------------------------p~~---~~~~~~lg~~~~~~g~~ 57 (320)
.+.|.+++..|+|.+....+..+=+ .+ |.. .-+.+.+|.-|...+++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 4568888888888777666654421 11 111 24567788889999999
Q ss_pred HHHHHHHHHHHhc------------------------CCCCH-----------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 58 NKALADAETTISL------------------------NPQWE-----------KGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 58 ~~A~~~~~~al~l------------------------~p~~~-----------~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
+.|.--|+++... +|+.. ..|.++...|...+++-.+...|..+|
T Consensus 142 ~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 142 AKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 8877777766543 23221 125555666666677777777777777
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHH
Q 020914 103 QYNPQSAEVSRKIKRVSQLAKDK 125 (320)
Q Consensus 103 ~~~p~~~~~~~~l~~~~~~~~~~ 125 (320)
-..|+. +.....+.+....|..
T Consensus 222 f~a~n~-dv~kg~~~~~e~~gi~ 243 (449)
T COG3014 222 FYALNG-DVNKGLGYLNEAYGIS 243 (449)
T ss_pred hcccCc-cHhHHHHHHHHHhccC
Confidence 777776 5555555555555443
No 470
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.44 E-value=60 Score=21.36 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhCCCC
Q 020914 94 ALSAFQTALQYNPQS 108 (320)
Q Consensus 94 A~~~~~~al~~~p~~ 108 (320)
|++.|..+++..|+.
T Consensus 32 aie~l~~~lk~e~d~ 46 (77)
T cd02683 32 GIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHhhCCCH
Confidence 334444455555543
No 471
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.32 E-value=1.4e+02 Score=25.54 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC--HHHH
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW--EKGY 78 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~--~~~~ 78 (320)
.+...+++.|+|.+|+....-.+.- .|.-..++..-..+|....+..++...+..|-.+ .|-. +..-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4556788999999999988776632 3445678888889999999999988888776544 2322 2233
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
..-|..+..-.+|.-|-.+|-.+++-.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 344667777889999999999888753
No 472
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=53.20 E-value=69 Score=27.70 Aligned_cols=109 Identities=10% Similarity=0.081 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
..+.....+.++...-.-++++ +|+-..... ...+-..-++.+++--...|+..++.+..+.-.+.-|+|..
T Consensus 76 ~~Vla~lkeLe~ev~piv~~le-~Pd~~~~~~-------~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~g 147 (432)
T KOG2758|consen 76 TEVLAELKELEEEVAPIVKVLE-NPDLIAALR-------SDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSG 147 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHH-------hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCccc
Confidence 3445555566666666655554 343222111 11122344566666667788899999999999999999999
Q ss_pred HHHHHHHHHhh--CCCC--HH-HHHHHHHHHHHHHHHHHHHHH
Q 020914 94 ALSAFQTALQY--NPQS--AE-VSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 94 A~~~~~~al~~--~p~~--~~-~~~~l~~~~~~~~~~~~A~~~ 131 (320)
|-.++-....+ +|+- .. .|-.++ ......+|+-|.+-
T Consensus 148 As~yLY~~r~l~~~~d~n~lsalwGKlA-SEIL~qnWd~A~ed 189 (432)
T KOG2758|consen 148 ASDYLYFYRALVSDPDRNYLSALWGKLA-SEILTQNWDGALED 189 (432)
T ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHHH-HHHHHhhHHHHHHH
Confidence 98765554444 3322 22 333333 22345667777643
No 473
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.21 E-value=33 Score=30.06 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHccCHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNP--------QWEKGYFRKGCILEAMEQYDDALSAF 98 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~ 98 (320)
.-+...|.-.+..+++++|...|..|..+.. ++..+++..|..++.+++++.++-.+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4477889999999999999999999998742 45788999999999999888776544
No 474
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.18 E-value=1.2e+02 Score=28.74 Aligned_cols=71 Identities=14% Similarity=0.001 Sum_probs=46.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHH
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--------PQWEKGYFRKGCILEA 87 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~lg~~~~~ 87 (320)
+..+.|+++.|.+...+ .++..-|..+|.+....|++..|.+++.++-.+. .++.+.+..+|..-.+
T Consensus 646 lal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 34455666665554433 3457789999999999999999999999986542 2444444444444433
Q ss_pred ccCH
Q 020914 88 MEQY 91 (320)
Q Consensus 88 ~~~~ 91 (320)
.|+.
T Consensus 721 ~g~~ 724 (794)
T KOG0276|consen 721 QGKN 724 (794)
T ss_pred hccc
Confidence 3333
No 475
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=50.25 E-value=32 Score=30.49 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
.-...|++++++|.. .++|+.|..++.++..+|+
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 447788899999887 4555666665555555543
No 476
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.18 E-value=1.9e+02 Score=25.99 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS 152 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 152 (320)
.++..+|+-|..-|+++.|++.|-++-....+. ...+.++-.+-..+|+|-............. ........
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~-----~~~~~~~q 225 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP-----DANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc-----hhhhhHHH
Confidence 467888999999999999999999966655443 3456666666667777766543321111100 00001111
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHhHhhc
Q 020914 153 EKYGAEECWKHVFSFVVETMETAVKSWHET 182 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~ 182 (320)
.-...+.+..|.....++.|+.|...|-.+
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 112345666777777778888887776553
No 477
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.16 E-value=1.2e+02 Score=23.78 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=25.6
Q ss_pred ccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 54 LVKLNKALADAETTISLNPQW--EKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 54 ~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
.++.++|+..|...-+-.-.. .-+.++.|.+..+.|+-..|+..|..+-.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 445555555555444433222 22344455555566666666666655444
No 478
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=49.65 E-value=5.5 Score=37.28 Aligned_cols=101 Identities=18% Similarity=0.062 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHH--HHhcCCC-CHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAI--KQDPS-NPTLFSNRAAAFLHLVKLNKALADAET--TISLNPQ-WEKG 77 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~--al~l~p~-~~~~ 77 (320)
+....-++.-+..+...|++..|...+.+.- .+.|. ........|.+....|++++|+..+.. ...+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 3445566777888999999999999988765 23332 356677788889999999999999874 1222222 2445
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+..++.++...|++-+|...+-..-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 666789999999998888766554444
No 479
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=49.01 E-value=72 Score=20.68 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=6.5
Q ss_pred ccCHHHHHHHHHHHH
Q 020914 88 MEQYDDALSAFQTAL 102 (320)
Q Consensus 88 ~~~~~~A~~~~~~al 102 (320)
.|++++|+.+|..++
T Consensus 21 ~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 21 AGDYEEALELYKKAI 35 (77)
T ss_pred cCCHHHHHHHHHHHH
Confidence 344444444444443
No 480
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.70 E-value=54 Score=24.28 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=15.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSN 40 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (320)
.+|..++.+|+++++..++..||.+.|+-
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqp 114 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQP 114 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCH
Confidence 44555555555555555555555554443
No 481
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=48.56 E-value=3e+02 Score=28.98 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 36 (320)
..+....+|+.++..|++.+|+..|..|++.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~ 271 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEI 271 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHH
Confidence 3466778999999999999999999999875
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.99 E-value=1.1e+02 Score=22.38 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=33.2
Q ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 93 DALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 93 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
++.+.|+.... +....+..|...+.++...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888887776 466778889999999999999999988753
No 483
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=47.80 E-value=75 Score=20.53 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=6.7
Q ss_pred cCHHHHHHHHHHHHh
Q 020914 89 EQYDDALSAFQTALQ 103 (320)
Q Consensus 89 ~~~~~A~~~~~~al~ 103 (320)
|++++|+.+|..+++
T Consensus 20 g~~~~Al~~Y~~a~e 34 (75)
T cd02656 20 GNYEEALELYKEALD 34 (75)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
No 484
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.24 E-value=1.7e+02 Score=24.14 Aligned_cols=43 Identities=16% Similarity=0.057 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAF 51 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 51 (320)
.+..++.+..+.|+|++.+.+.++++..+|.- .+=...++.+|
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 34566777777777777777777777776643 23344444444
No 485
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.21 E-value=64 Score=25.46 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 47 RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 47 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
...++.+.|.+++|.+.+++... +|++...-..|..+-.....+..=++.|.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnFS 168 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNFS 168 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhcc
Confidence 44566777888888888888877 77776666666666666666666555554
No 486
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.04 E-value=1.9e+02 Score=24.65 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 57 LNKALADAETTISLNPQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.+.-+..+..+++-+|.+-..|..+-.++... .++..-....++.+..+|.+..+|..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~Y 149 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSY 149 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeee
Confidence 45667778999999999999999998888765 66788888899999999998776643
No 487
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.60 E-value=86 Score=22.94 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 020914 109 AEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+..|...+..+...|++.+|.++
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~i 121 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEV 121 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444455555555443
No 488
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=44.63 E-value=52 Score=22.82 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
.++++.+-.+.-..+.|+|++|.+.+++|
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea 41 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEA 41 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666666777777777777766665
No 489
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.23 E-value=64 Score=22.53 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 77 (320)
+..+-.+|..|...|+-+.|+.-|+.--.+.|+....
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 5788899999999999999999999999999987644
No 490
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=43.09 E-value=59 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
..++++.+..+....+.|+|++|...+++|
T Consensus 11 aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a 40 (96)
T PF02255_consen 11 AGDARSLAMEALKAAREGDFEEAEELLKEA 40 (96)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345666677777777777777777776665
No 491
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=42.87 E-value=57 Score=22.74 Aligned_cols=29 Identities=34% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
.++++.+..+.-..+.|+|++|.+.+++|
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA 43 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQA 43 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35556666666666666666666666554
No 492
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=42.81 E-value=1.1e+02 Score=22.62 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
+.+.|...|+..++.+|++..++..+-..
T Consensus 91 e~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 91 EPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp -HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 34556666666666666666665554433
No 493
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.46 E-value=2.5e+02 Score=25.08 Aligned_cols=62 Identities=16% Similarity=0.010 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHH--HHHHHccCHHHHHHHHHHHHhh
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWE--KGYFRKG--CILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg--~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.-...+.-++..++|..|...++.....-|... ..+..+. --+...-++.+|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456677888899999999999999998533333 3444444 4456788999999999998876
No 494
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=41.98 E-value=68 Score=24.26 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHH
Q 020914 78 YFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 78 ~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
-..+|..+...| +.++|..+|-+||.+.|.-.+..
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL 128 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLL 128 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHH
Confidence 345899999999 99999999999999988755544
No 495
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.97 E-value=1.9e+02 Score=25.01 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC------HHHHHH
Q 020914 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQ------YDDALS 96 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~------~~~A~~ 96 (320)
.++||.+-.+|+..+. .++|++|...|+.+++ |+..+.-|...+. -.+..+
T Consensus 7 l~kaI~lv~kA~~eD~---------------a~nY~eA~~lY~~ale--------YF~~~lKYE~~~~kaKd~IraK~~E 63 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN---------------AKNYEEALRLYQNALE--------YFLHALKYEANNKKAKDSIRAKFTE 63 (439)
T ss_pred HHHHHHHHHHHhhhcc---------------hhchHHHHHHHHHHHH--------HHHHHHHhhhcChhHHHHHHHHHHH
Q ss_pred HHHHHHhh
Q 020914 97 AFQTALQY 104 (320)
Q Consensus 97 ~~~~al~~ 104 (320)
++.+|-++
T Consensus 64 YLdRAEkL 71 (439)
T KOG0739|consen 64 YLDRAEKL 71 (439)
T ss_pred HHHHHHHH
No 496
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=41.95 E-value=48 Score=25.02 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=17.1
Q ss_pred HHHHHHHcc-CHHHHHHHHHHHHhcCCCCHH
Q 020914 47 RAAAFLHLV-KLNKALADAETTISLNPQWEK 76 (320)
Q Consensus 47 lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~ 76 (320)
+|..+...| +.++|..+|-+||...|+-.+
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 445555555 566666666666666654443
No 497
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.78 E-value=3.7e+02 Score=26.81 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DP 38 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p 38 (320)
+..+..-|..++..|++++|...|-++|.. +|
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 345677799999999999999999999854 44
No 498
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=41.28 E-value=1.4e+02 Score=21.99 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=25.0
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 49 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
..++..-+.+.|...|+..++.+|++..++..+-+.+-.
T Consensus 84 ~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 84 CSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 334445566778888888888888888877777666544
No 499
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.27 E-value=99 Score=27.05 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 57 LNKALADAETTISLNPQ---WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
.++....++..++.-|+ .+..|..++.+....|.+++.+..|++|+.....
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 35777788888888885 5788999999999999999999999999998665
No 500
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.50 E-value=85 Score=23.31 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=29.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
..+|..+...|+++++..++-.|+.+.|.-...+.
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~ 119 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQ 119 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHH
Confidence 45899999999999999999999999887766543
Done!