Query 020914
Match_columns 320
No_of_seqs 344 out of 2678
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 10:02:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5E-30 1.7E-34 226.4 13.3 256 4-277 64-332 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 8.7E-30 3E-34 224.8 11.8 269 3-282 97-371 (388)
3 2h6f_A Protein farnesyltransfe 100.0 7.3E-28 2.5E-32 211.4 17.1 247 3-263 93-366 (382)
4 2pl2_A Hypothetical conserved 100.0 1.1E-27 3.7E-32 194.8 16.9 195 4-275 2-210 (217)
5 4eqf_A PEX5-related protein; a 99.9 4.2E-28 1.4E-32 212.2 10.5 263 6-272 64-349 (365)
6 3ieg_A DNAJ homolog subfamily 99.9 4.2E-27 1.4E-31 204.3 16.3 268 6-278 2-334 (359)
7 3hym_B Cell division cycle pro 99.9 1.2E-26 4.1E-31 199.4 18.8 268 4-282 19-302 (330)
8 3hym_B Cell division cycle pro 99.9 2E-27 6.8E-32 204.2 13.7 254 3-267 52-322 (330)
9 1fch_A Peroxisomal targeting s 99.9 7.9E-27 2.7E-31 203.9 16.5 264 7-275 64-355 (368)
10 2y4t_A DNAJ homolog subfamily 99.9 1.8E-26 6.1E-31 207.2 19.2 272 2-278 21-357 (450)
11 3cv0_A Peroxisome targeting si 99.9 1.3E-26 4.6E-31 198.8 14.1 266 5-276 19-312 (327)
12 3ieg_A DNAJ homolog subfamily 99.9 1.1E-26 3.9E-31 201.5 13.3 237 40-277 2-299 (359)
13 2gw1_A Mitochondrial precursor 99.9 2.4E-25 8.3E-30 202.7 17.2 264 4-276 3-364 (514)
14 3uq3_A Heat shock protein STI1 99.9 9.4E-25 3.2E-29 180.9 19.2 240 4-258 2-255 (258)
15 3fp2_A TPR repeat-containing p 99.9 1.5E-25 5.2E-30 205.4 14.0 265 4-276 22-404 (537)
16 3u4t_A TPR repeat-containing p 99.9 2.6E-25 8.8E-30 186.2 13.1 245 6-262 2-267 (272)
17 4gco_A Protein STI-1; structur 99.9 3E-24 1E-28 159.0 17.3 117 3-119 9-125 (126)
18 2y4t_A DNAJ homolog subfamily 99.9 1.7E-24 5.9E-29 194.2 18.5 248 4-258 57-371 (450)
19 2xpi_A Anaphase-promoting comp 99.9 7.1E-25 2.4E-29 203.7 15.6 264 4-278 302-578 (597)
20 1fch_A Peroxisomal targeting s 99.9 2.8E-25 9.5E-30 194.0 8.7 256 15-278 33-313 (368)
21 2xpi_A Anaphase-promoting comp 99.9 1.3E-23 4.5E-28 195.2 19.7 247 4-261 336-595 (597)
22 4gyw_A UDP-N-acetylglucosamine 99.9 6.3E-24 2.1E-28 200.1 17.7 175 2-182 4-178 (723)
23 4a1s_A PINS, partner of inscut 99.9 4.9E-24 1.7E-28 189.1 15.4 272 4-275 45-368 (411)
24 4g1t_A Interferon-induced prot 99.9 5.2E-24 1.8E-28 192.4 15.6 264 5-275 49-359 (472)
25 4i17_A Hypothetical protein; T 99.9 3.8E-23 1.3E-27 168.9 17.3 201 3-214 3-214 (228)
26 2gw1_A Mitochondrial precursor 99.9 1.5E-24 5.2E-29 197.5 9.8 263 4-278 183-477 (514)
27 2q7f_A YRRB protein; TPR, prot 99.9 1E-23 3.6E-28 173.2 13.9 215 5-261 21-238 (243)
28 2h6f_A Protein farnesyltransfe 99.9 7.6E-24 2.6E-28 185.9 13.7 205 3-217 127-356 (382)
29 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-22 3.9E-27 160.3 18.8 128 5-132 3-130 (184)
30 4eqf_A PEX5-related protein; a 99.9 8.4E-24 2.9E-28 184.8 13.3 230 3-238 95-354 (365)
31 3ro2_A PINS homolog, G-protein 99.9 1.8E-23 6E-28 179.4 14.9 273 4-276 2-329 (338)
32 3urz_A Uncharacterized protein 99.9 1.4E-22 4.8E-27 163.4 19.1 124 5-128 2-141 (208)
33 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.2E-23 1.8E-27 172.2 17.2 220 4-272 40-268 (275)
34 3sf4_A G-protein-signaling mod 99.9 1.7E-23 5.9E-28 184.7 14.2 271 5-275 7-332 (406)
35 3fp2_A TPR repeat-containing p 99.9 6.6E-23 2.3E-27 187.9 18.5 227 7-240 243-491 (537)
36 4g1t_A Interferon-induced prot 99.9 1.7E-22 5.9E-27 182.4 19.7 274 4-283 133-463 (472)
37 4abn_A Tetratricopeptide repea 99.9 2.2E-23 7.4E-28 188.9 13.5 119 3-122 98-226 (474)
38 2pl2_A Hypothetical conserved 99.9 1.6E-22 5.5E-27 164.1 15.6 164 3-173 35-209 (217)
39 2ho1_A Type 4 fimbrial biogene 99.9 6.9E-22 2.4E-26 163.5 17.8 210 3-254 32-247 (252)
40 3cv0_A Peroxisome targeting si 99.9 3.6E-23 1.2E-27 177.4 10.3 233 3-241 51-316 (327)
41 3vtx_A MAMA; tetratricopeptide 99.9 4.1E-22 1.4E-26 157.1 13.9 177 39-259 3-182 (184)
42 1ouv_A Conserved hypothetical 99.9 2.9E-21 1E-25 162.0 19.1 236 2-257 1-263 (273)
43 2vq2_A PILW, putative fimbrial 99.9 5.1E-21 1.8E-25 155.0 19.3 210 3-254 4-220 (225)
44 4ga2_A E3 SUMO-protein ligase 99.9 6.5E-22 2.2E-26 151.0 12.7 119 3-121 27-146 (150)
45 3gyz_A Chaperone protein IPGC; 99.9 1.9E-21 6.5E-26 148.1 14.5 107 3-109 32-138 (151)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.4E-23 1.9E-27 172.1 4.0 228 13-279 11-244 (275)
47 3qky_A Outer membrane assembly 99.9 2.6E-20 9E-25 155.2 20.2 211 3-269 11-251 (261)
48 3uq3_A Heat shock protein STI1 99.9 1.1E-21 3.6E-26 162.4 11.6 213 39-278 3-235 (258)
49 3u4t_A TPR repeat-containing p 99.9 2E-21 6.8E-26 162.5 12.9 206 3-215 33-256 (272)
50 4gyw_A UDP-N-acetylglucosamine 99.9 1.1E-21 3.9E-26 184.7 12.3 168 36-240 4-174 (723)
51 3upv_A Heat shock protein STI1 99.9 1.8E-20 6.2E-25 138.4 16.0 117 4-120 1-123 (126)
52 3sf4_A G-protein-signaling mod 99.9 1.4E-21 4.9E-26 172.4 10.9 262 7-270 47-367 (406)
53 2vgx_A Chaperone SYCD; alterna 99.8 3.4E-20 1.1E-24 141.1 15.7 118 3-120 17-134 (148)
54 2ond_A Cleavage stimulation fa 99.8 9.4E-20 3.2E-24 155.8 20.2 236 4-245 5-275 (308)
55 3nf1_A KLC 1, kinesin light ch 99.8 5.2E-21 1.8E-25 162.6 12.3 238 2-241 22-308 (311)
56 4ga2_A E3 SUMO-protein ligase 99.8 6.2E-22 2.1E-26 151.1 5.7 119 12-130 2-120 (150)
57 2pzi_A Probable serine/threoni 99.8 3.5E-21 1.2E-25 181.7 12.1 121 3-126 390-518 (681)
58 3mkr_A Coatomer subunit epsilo 99.8 2.4E-21 8.3E-26 164.2 9.8 236 15-269 7-253 (291)
59 2xcb_A PCRH, regulatory protei 99.8 5.3E-20 1.8E-24 139.0 16.1 123 2-124 13-135 (142)
60 2hr2_A Hypothetical protein; a 99.8 1.2E-20 4.2E-25 142.3 11.5 117 5-121 9-148 (159)
61 4gcn_A Protein STI-1; structur 99.8 5.9E-20 2E-24 136.0 15.1 112 3-115 4-122 (127)
62 2c2l_A CHIP, carboxy terminus 99.8 6.8E-20 2.3E-24 154.6 17.2 106 4-109 1-106 (281)
63 3ulq_A Response regulator aspa 99.8 3.2E-20 1.1E-24 163.4 14.2 231 10-242 106-370 (383)
64 4a1s_A PINS, partner of inscut 99.8 3.7E-20 1.3E-24 164.1 14.4 232 7-240 86-372 (411)
65 4i17_A Hypothetical protein; T 99.8 2.3E-19 7.8E-24 146.3 17.5 210 38-259 4-223 (228)
66 3ro2_A PINS homolog, G-protein 99.8 6.2E-20 2.1E-24 157.2 14.8 235 7-241 43-333 (338)
67 2yhc_A BAMD, UPF0169 lipoprote 99.8 4.7E-19 1.6E-23 144.4 19.1 111 6-116 3-137 (225)
68 3sz7_A HSC70 cochaperone (SGT) 99.8 2.7E-19 9.2E-24 138.4 16.7 117 3-119 7-123 (164)
69 3rkv_A Putative peptidylprolyl 99.8 1.6E-19 5.3E-24 139.4 14.2 123 5-127 9-150 (162)
70 2q7f_A YRRB protein; TPR, prot 99.8 4.2E-19 1.4E-23 145.6 17.5 130 3-132 53-182 (243)
71 3as5_A MAMA; tetratricopeptide 99.8 5.3E-19 1.8E-23 138.4 17.2 129 4-132 5-133 (186)
72 3mkr_A Coatomer subunit epsilo 99.8 2.1E-19 7.2E-24 152.3 15.6 234 3-253 29-272 (291)
73 1p5q_A FKBP52, FK506-binding p 99.8 7.4E-19 2.5E-23 152.0 18.8 128 3-130 143-285 (336)
74 2ond_A Cleavage stimulation fa 99.8 1E-18 3.4E-23 149.4 18.7 236 3-258 46-305 (308)
75 2pzi_A Probable serine/threoni 99.8 2E-19 6.7E-24 169.8 13.7 179 3-188 429-608 (681)
76 1a17_A Serine/threonine protei 99.8 6.9E-18 2.4E-22 130.0 20.0 128 5-132 11-140 (166)
77 2lni_A Stress-induced-phosphop 99.8 8E-19 2.8E-23 130.0 14.1 122 2-123 11-132 (133)
78 2vq2_A PILW, putative fimbrial 99.8 5E-19 1.7E-23 143.1 13.8 199 36-274 3-206 (225)
79 2vyi_A SGTA protein; chaperone 99.8 2.3E-18 7.8E-23 126.9 16.0 122 3-124 8-129 (131)
80 3q49_B STIP1 homology and U bo 99.8 1.7E-18 5.9E-23 129.3 15.0 121 3-123 5-130 (137)
81 3gyz_A Chaperone protein IPGC; 99.8 9.9E-20 3.4E-24 138.6 8.2 111 22-132 17-127 (151)
82 2ho1_A Type 4 fimbrial biogene 99.8 2.8E-18 9.6E-23 141.7 17.4 130 3-132 67-198 (252)
83 2fbn_A 70 kDa peptidylprolyl i 99.8 4.2E-18 1.4E-22 135.8 17.7 126 4-129 35-176 (198)
84 1qqe_A Vesicular transport pro 99.8 4.9E-19 1.7E-23 150.2 12.9 212 8-254 38-278 (292)
85 4abn_A Tetratricopeptide repea 99.8 6.9E-19 2.4E-23 159.3 13.9 129 3-132 133-281 (474)
86 1hxi_A PEX5, peroxisome target 99.8 1.4E-18 4.9E-23 127.3 12.7 104 7-110 17-120 (121)
87 3q15_A PSP28, response regulat 99.8 1.1E-18 3.8E-23 153.3 14.1 231 8-240 102-365 (378)
88 3urz_A Uncharacterized protein 99.8 2.3E-18 7.9E-23 138.6 14.7 162 40-212 3-189 (208)
89 3qky_A Outer membrane assembly 99.8 3.4E-18 1.2E-22 142.4 16.2 188 34-276 8-221 (261)
90 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 3.4E-18 1.1E-22 154.0 17.0 129 3-131 264-407 (457)
91 4gco_A Protein STI-1; structur 99.8 6.9E-19 2.4E-23 129.9 10.1 101 32-132 4-104 (126)
92 1elw_A TPR1-domain of HOP; HOP 99.8 1.6E-17 5.3E-22 120.1 16.6 114 6-119 3-116 (118)
93 3ulq_A Response regulator aspa 99.8 3.9E-18 1.3E-22 150.1 15.7 204 4-213 140-372 (383)
94 3dra_A Protein farnesyltransfe 99.8 3.3E-17 1.1E-21 138.6 18.8 240 8-259 33-302 (306)
95 2r5s_A Uncharacterized protein 99.8 1.1E-18 3.8E-23 136.6 9.0 130 2-132 1-131 (176)
96 1qqe_A Vesicular transport pro 99.8 7.1E-18 2.4E-22 143.0 14.6 220 22-286 32-276 (292)
97 3edt_B KLC 2, kinesin light ch 99.8 1.1E-17 3.7E-22 139.8 15.3 130 3-132 39-192 (283)
98 1na0_A Designed protein CTPR3; 99.8 5.7E-17 2E-21 118.3 16.5 117 6-122 8-124 (125)
99 1ouv_A Conserved hypothetical 99.8 6.7E-17 2.3E-21 135.3 19.0 196 4-213 35-255 (273)
100 3qou_A Protein YBBN; thioredox 99.8 1.2E-17 4E-22 141.3 14.2 129 4-132 114-242 (287)
101 1elr_A TPR2A-domain of HOP; HO 99.8 3.3E-17 1.1E-21 120.7 14.9 120 4-124 1-127 (131)
102 3edt_B KLC 2, kinesin light ch 99.8 2.4E-18 8.3E-23 143.9 9.8 162 18-181 12-201 (283)
103 2dba_A Smooth muscle cell asso 99.8 3.4E-17 1.1E-21 123.6 15.2 117 3-119 24-143 (148)
104 3as5_A MAMA; tetratricopeptide 99.7 6.4E-17 2.2E-21 126.4 16.8 130 3-132 38-167 (186)
105 2xev_A YBGF; tetratricopeptide 99.7 4.3E-17 1.5E-21 120.3 14.4 113 8-120 3-121 (129)
106 1ihg_A Cyclophilin 40; ppiase 99.7 4.8E-17 1.7E-21 142.3 16.9 125 5-129 221-361 (370)
107 2fo7_A Synthetic consensus TPR 99.7 8.1E-17 2.8E-21 119.0 15.8 125 8-132 2-126 (136)
108 1hz4_A MALT regulatory protein 99.7 2.7E-17 9.3E-22 143.9 15.2 269 6-276 13-319 (373)
109 1hh8_A P67PHOX, NCF-2, neutrop 99.7 7.9E-17 2.7E-21 129.6 15.9 127 3-132 2-144 (213)
110 1zu2_A Mitochondrial import re 99.7 1.8E-17 6.3E-22 124.7 10.5 99 18-116 13-132 (158)
111 2vgx_A Chaperone SYCD; alterna 99.7 9.7E-18 3.3E-22 127.4 9.0 108 25-132 5-112 (148)
112 2ooe_A Cleavage stimulation fa 99.7 4.4E-16 1.5E-20 142.9 21.1 129 3-133 9-154 (530)
113 2vsy_A XCC0866; transferase, g 99.7 1.4E-16 4.8E-21 147.4 17.3 130 3-132 19-151 (568)
114 1wao_1 Serine/threonine protei 99.7 9E-18 3.1E-22 151.9 8.7 131 3-133 2-134 (477)
115 3nf1_A KLC 1, kinesin light ch 99.7 1E-16 3.5E-21 135.9 14.6 208 3-212 65-310 (311)
116 2kck_A TPR repeat; tetratricop 99.7 4E-17 1.4E-21 116.9 9.5 107 3-109 2-111 (112)
117 2xm6_A Protein corresponding t 99.7 8.6E-16 3E-20 139.6 20.4 119 7-131 75-209 (490)
118 3dra_A Protein farnesyltransfe 99.7 2E-16 6.9E-21 133.8 15.0 203 3-217 63-296 (306)
119 2vsy_A XCC0866; transferase, g 99.7 1.2E-16 4.1E-21 147.9 14.7 155 20-180 2-159 (568)
120 1dce_A Protein (RAB geranylger 99.7 4.6E-16 1.6E-20 143.1 18.1 179 15-268 36-244 (567)
121 2e2e_A Formate-dependent nitri 99.7 3.6E-16 1.2E-20 122.1 14.9 106 4-109 41-149 (177)
122 2xm6_A Protein corresponding t 99.7 4.5E-16 1.5E-20 141.4 17.7 124 4-133 36-175 (490)
123 3dss_A Geranylgeranyl transfer 99.7 1.9E-15 6.5E-20 128.6 20.3 121 2-122 59-192 (331)
124 2yhc_A BAMD, UPF0169 lipoprote 99.7 3.8E-16 1.3E-20 127.1 15.3 129 4-132 38-207 (225)
125 2xcb_A PCRH, regulatory protei 99.7 9.3E-17 3.2E-21 121.0 10.2 105 28-132 5-109 (142)
126 3k9i_A BH0479 protein; putativ 99.7 2.8E-17 9.5E-22 119.6 5.9 95 19-113 2-99 (117)
127 3q15_A PSP28, response regulat 99.7 2.8E-16 9.5E-21 138.0 13.1 203 3-211 137-367 (378)
128 2qfc_A PLCR protein; TPR, HTH, 99.7 4.5E-15 1.5E-19 125.7 20.1 173 4-178 72-266 (293)
129 2if4_A ATFKBP42; FKBP-like, al 99.7 5.8E-17 2E-21 140.2 8.2 125 4-128 176-318 (338)
130 2r5s_A Uncharacterized protein 99.7 3.3E-16 1.1E-20 122.4 10.8 129 3-132 36-167 (176)
131 2e2e_A Formate-dependent nitri 99.7 4.3E-16 1.5E-20 121.7 10.7 117 16-132 19-138 (177)
132 3q7a_A Farnesyltransferase alp 99.7 1.2E-15 4.1E-20 130.4 14.0 196 3-266 50-258 (349)
133 3upv_A Heat shock protein STI1 99.6 2.5E-15 8.4E-20 110.5 12.7 95 38-132 1-95 (126)
134 2ooe_A Cleavage stimulation fa 99.6 5.3E-15 1.8E-19 135.7 17.5 129 3-131 268-413 (530)
135 1p5q_A FKBP52, FK506-binding p 99.6 1.2E-16 4E-21 138.2 5.9 144 19-168 125-283 (336)
136 4gcn_A Protein STI-1; structur 99.6 7.1E-16 2.4E-20 113.8 9.3 92 40-131 7-105 (127)
137 1hz4_A MALT regulatory protein 99.6 2.7E-15 9.2E-20 131.2 14.6 235 6-242 52-324 (373)
138 2ifu_A Gamma-SNAP; membrane fu 99.6 1.8E-14 6.1E-19 122.8 18.7 165 46-214 41-228 (307)
139 3dss_A Geranylgeranyl transfer 99.6 2.7E-14 9.2E-19 121.6 19.3 115 17-131 39-167 (331)
140 1hh8_A P67PHOX, NCF-2, neutrop 99.6 8.8E-15 3E-19 117.5 15.2 105 6-110 36-156 (213)
141 2ifu_A Gamma-SNAP; membrane fu 99.6 2.9E-15 9.8E-20 127.8 12.9 171 7-188 36-226 (307)
142 3qou_A Protein YBBN; thioredox 99.6 1.3E-15 4.6E-20 128.6 10.6 130 3-132 147-278 (287)
143 3u3w_A Transcriptional activat 99.6 1.1E-14 3.8E-19 123.3 16.3 174 5-180 73-268 (293)
144 1dce_A Protein (RAB geranylger 99.6 3.8E-15 1.3E-19 137.1 13.0 120 3-122 59-191 (567)
145 1hxi_A PEX5, peroxisome target 99.6 2.3E-14 7.9E-19 104.7 13.8 91 42-132 18-108 (121)
146 4f3v_A ESX-1 secretion system 99.6 1.1E-15 3.9E-20 126.6 7.3 215 5-262 5-253 (282)
147 2l6j_A TPR repeat-containing p 99.6 8.8E-16 3E-20 109.9 5.9 95 6-100 3-103 (111)
148 2c2l_A CHIP, carboxy terminus 99.6 1.2E-14 4E-19 122.4 13.2 195 38-245 1-204 (281)
149 2hr2_A Hypothetical protein; a 99.6 1.4E-14 4.9E-19 109.2 11.8 92 41-132 11-125 (159)
150 2fo7_A Synthetic consensus TPR 99.6 3.3E-14 1.1E-18 104.7 13.7 106 3-108 31-136 (136)
151 2kat_A Uncharacterized protein 99.6 4.7E-14 1.6E-18 101.8 14.0 99 25-123 3-103 (115)
152 3q49_B STIP1 homology and U bo 99.6 7E-14 2.4E-18 103.9 14.9 98 35-132 3-100 (137)
153 3gw4_A Uncharacterized protein 99.6 6.9E-14 2.4E-18 111.1 14.9 116 17-132 2-130 (203)
154 3sz7_A HSC70 cochaperone (SGT) 99.6 3.1E-14 1.1E-18 109.7 12.5 96 37-132 7-102 (164)
155 1xi4_A Clathrin heavy chain; a 99.6 2.1E-13 7.2E-18 132.6 20.5 233 6-270 1104-1375(1630)
156 1a17_A Serine/threonine protei 99.6 1.4E-13 4.6E-18 105.6 15.2 92 41-132 13-104 (166)
157 2fbn_A 70 kDa peptidylprolyl i 99.5 5.6E-15 1.9E-19 117.6 6.2 123 10-132 7-145 (198)
158 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.2E-15 7.7E-20 135.5 4.1 113 20-132 247-374 (457)
159 1na3_A Designed protein CTPR2; 99.5 1.4E-13 4.6E-18 94.6 12.2 84 5-88 7-90 (91)
160 1xi4_A Clathrin heavy chain; a 99.5 2.1E-13 7.3E-18 132.6 17.2 234 13-274 1055-1340(1630)
161 3rjv_A Putative SEL1 repeat pr 99.5 5.9E-14 2E-18 113.0 11.4 124 4-132 15-152 (212)
162 3e4b_A ALGK; tetratricopeptide 99.5 3.5E-15 1.2E-19 134.2 4.3 107 11-124 7-121 (452)
163 2kck_A TPR repeat; tetratricop 99.5 2.9E-14 1E-18 101.7 8.3 97 36-132 1-100 (112)
164 3ro3_A PINS homolog, G-protein 99.5 8.7E-14 3E-18 105.9 11.2 128 4-131 6-151 (164)
165 3q7a_A Farnesyltransferase alp 99.5 2.1E-13 7.2E-18 116.6 14.5 122 3-124 84-216 (349)
166 2lni_A Stress-induced-phosphop 99.5 8.6E-14 2.9E-18 102.5 10.7 96 37-132 12-107 (133)
167 2qfc_A PLCR protein; TPR, HTH, 99.5 4.6E-13 1.6E-17 113.3 15.9 125 7-131 115-259 (293)
168 3e4b_A ALGK; tetratricopeptide 99.5 1.2E-13 4.2E-18 124.0 12.8 227 6-262 68-366 (452)
169 3gw4_A Uncharacterized protein 99.5 1.6E-13 5.6E-18 108.9 11.5 128 5-132 24-170 (203)
170 1zu2_A Mitochondrial import re 99.5 1.2E-13 4E-18 104.0 9.8 73 52-124 13-95 (158)
171 1na3_A Designed protein CTPR2; 99.5 3.4E-13 1.2E-17 92.6 10.9 84 39-122 7-90 (91)
172 2l6j_A TPR repeat-containing p 99.5 1.3E-13 4.4E-18 98.5 8.8 89 40-128 3-97 (111)
173 2vyi_A SGTA protein; chaperone 99.5 2.2E-13 7.6E-18 99.8 10.2 98 35-132 6-103 (131)
174 2kc7_A BFR218_protein; tetratr 99.5 8.3E-14 2.8E-18 97.6 7.3 92 10-109 3-95 (99)
175 3rkv_A Putative peptidylprolyl 99.5 3.1E-13 1.1E-17 103.8 11.1 92 41-132 11-120 (162)
176 1na0_A Designed protein CTPR3; 99.5 8.2E-13 2.8E-17 95.8 12.5 97 36-132 3-100 (125)
177 3u3w_A Transcriptional activat 99.5 3.1E-13 1.1E-17 114.3 11.6 124 9-132 117-260 (293)
178 3ma5_A Tetratricopeptide repea 99.5 6E-13 2E-17 93.6 10.6 72 36-107 2-73 (100)
179 1elw_A TPR1-domain of HOP; HOP 99.4 1E-12 3.6E-17 94.3 11.3 93 40-132 3-95 (118)
180 2dba_A Smooth muscle cell asso 99.4 2.3E-12 7.8E-17 96.7 13.0 98 35-132 22-122 (148)
181 4b4t_Q 26S proteasome regulato 99.4 2.3E-12 7.9E-17 114.6 15.0 202 8-210 5-246 (434)
182 2xev_A YBGF; tetratricopeptide 99.4 1.2E-12 4.2E-17 96.0 10.6 91 42-132 3-99 (129)
183 3k9i_A BH0479 protein; putativ 99.4 1.3E-12 4.3E-17 94.6 10.5 82 3-84 23-104 (117)
184 1b89_A Protein (clathrin heavy 99.4 6.3E-14 2.1E-18 122.7 3.7 227 6-275 31-268 (449)
185 1wao_1 Serine/threonine protei 99.4 2.5E-13 8.6E-18 122.7 7.4 109 3-111 36-157 (477)
186 1elr_A TPR2A-domain of HOP; HO 99.4 1.6E-12 5.4E-17 95.2 10.2 94 39-132 2-102 (131)
187 1b89_A Protein (clathrin heavy 99.4 3.5E-14 1.2E-18 124.3 1.4 228 5-271 59-303 (449)
188 3rjv_A Putative SEL1 repeat pr 99.4 1.5E-12 5.2E-17 104.7 10.7 125 4-132 47-191 (212)
189 3ma5_A Tetratricopeptide repea 99.4 1.6E-12 5.6E-17 91.3 9.3 89 2-90 2-92 (100)
190 3ro3_A PINS homolog, G-protein 99.4 6.7E-12 2.3E-16 95.2 11.7 137 41-179 9-159 (164)
191 3n71_A Histone lysine methyltr 99.4 6.3E-12 2.2E-16 113.2 13.2 126 8-133 310-459 (490)
192 2if4_A ATFKBP42; FKBP-like, al 99.3 1.5E-12 5.3E-17 112.4 7.7 103 8-110 231-334 (338)
193 1ihg_A Cyclophilin 40; ppiase 99.3 2.3E-11 8E-16 106.2 12.9 95 3-97 269-363 (370)
194 4f3v_A ESX-1 secretion system 99.3 3.1E-11 1.1E-15 100.0 12.8 125 7-132 102-231 (282)
195 2kc7_A BFR218_protein; tetratr 99.3 6.4E-11 2.2E-15 82.6 11.0 71 44-114 3-74 (99)
196 2kat_A Uncharacterized protein 99.3 3.3E-11 1.1E-15 86.7 9.5 88 3-90 15-104 (115)
197 4b4t_Q 26S proteasome regulato 99.2 2.4E-10 8.1E-15 101.6 14.2 179 5-183 53-250 (434)
198 3bee_A Putative YFRE protein; 99.2 2.8E-10 9.5E-15 78.4 11.1 73 37-109 2-77 (93)
199 1pc2_A Mitochondria fission pr 99.2 6E-10 2.1E-14 82.8 12.6 98 22-119 13-115 (152)
200 4e6h_A MRNA 3'-END-processing 99.1 2.3E-09 7.9E-14 100.2 18.0 213 24-244 326-574 (679)
201 3mv2_B Coatomer subunit epsilo 99.1 1.3E-09 4.5E-14 91.4 14.8 196 26-240 85-305 (310)
202 3bee_A Putative YFRE protein; 99.1 5.9E-10 2E-14 76.7 9.0 74 2-75 1-77 (93)
203 3qww_A SET and MYND domain-con 99.1 7.2E-10 2.5E-14 98.3 11.7 103 11-113 302-425 (433)
204 3qwp_A SET and MYND domain-con 99.1 7.8E-10 2.7E-14 98.2 11.5 107 7-113 287-414 (429)
205 3mv2_B Coatomer subunit epsilo 99.1 3.6E-09 1.2E-13 88.8 14.4 148 60-209 85-240 (310)
206 1klx_A Cysteine rich protein B 99.1 2.4E-09 8.1E-14 79.7 11.9 105 21-133 9-121 (138)
207 1klx_A Cysteine rich protein B 99.0 3.2E-09 1.1E-13 79.0 11.4 98 13-116 31-136 (138)
208 2v5f_A Prolyl 4-hydroxylase su 99.0 3.4E-09 1.2E-13 74.7 10.5 76 7-82 5-87 (104)
209 3ly7_A Transcriptional activat 99.0 9.8E-09 3.4E-13 87.7 14.4 126 6-132 195-333 (372)
210 4e6h_A MRNA 3'-END-processing 99.0 3.9E-09 1.3E-13 98.7 12.8 205 3-213 339-574 (679)
211 2v5f_A Prolyl 4-hydroxylase su 99.0 1.1E-08 3.6E-13 72.1 12.2 79 40-118 4-89 (104)
212 3n71_A Histone lysine methyltr 98.9 2.2E-09 7.4E-14 96.7 8.9 103 3-105 347-465 (490)
213 3u64_A Protein TP_0956; tetrat 98.9 9.3E-09 3.2E-13 84.4 9.9 107 2-108 147-273 (301)
214 1pc2_A Mitochondria fission pr 98.7 2.8E-08 9.7E-13 73.8 7.7 82 4-85 29-115 (152)
215 1nzn_A CGI-135 protein, fissio 98.7 5.1E-07 1.7E-11 64.6 12.3 101 19-119 13-118 (126)
216 3ly7_A Transcriptional activat 98.6 2.2E-07 7.4E-12 79.5 10.5 106 3-109 229-344 (372)
217 3u64_A Protein TP_0956; tetrat 98.6 1.1E-06 3.6E-11 72.3 13.6 129 4-132 103-263 (301)
218 2uy1_A Cleavage stimulation fa 98.4 3.3E-05 1.1E-09 69.8 18.5 120 78-208 289-412 (493)
219 3qwp_A SET and MYND domain-con 98.4 9.1E-07 3.1E-11 78.4 8.0 86 3-88 325-426 (429)
220 3qww_A SET and MYND domain-con 98.3 2.6E-06 8.9E-11 75.5 10.0 76 3-78 336-424 (433)
221 2uy1_A Cleavage stimulation fa 98.1 7.4E-05 2.5E-09 67.5 15.6 202 23-240 195-413 (493)
222 4h7y_A Dual specificity protei 98.1 3.8E-05 1.3E-09 56.2 10.6 109 3-112 9-131 (161)
223 3ffl_A Anaphase-promoting comp 98.1 2.8E-05 9.6E-10 58.1 9.8 91 9-99 22-146 (167)
224 1nzn_A CGI-135 protein, fissio 98.1 1.3E-05 4.4E-10 57.3 7.5 82 4-85 32-118 (126)
225 1y8m_A FIS1; mitochondria, unk 98.0 0.00042 1.4E-08 50.3 14.1 81 38-118 36-120 (144)
226 3o48_A Mitochondria fission 1 98.0 0.00016 5.4E-09 51.9 11.6 80 40-119 39-122 (134)
227 3o48_A Mitochondria fission 1 97.8 0.00026 8.9E-09 50.7 9.9 80 6-85 39-122 (134)
228 3kae_A CDC27, possible protein 97.7 0.0052 1.8E-07 45.8 15.9 102 7-113 33-152 (242)
229 1y8m_A FIS1; mitochondria, unk 97.7 0.00052 1.8E-08 49.8 10.5 81 5-85 37-121 (144)
230 4h7y_A Dual specificity protei 97.7 0.0004 1.4E-08 50.8 9.6 97 35-132 7-117 (161)
231 3ffl_A Anaphase-promoting comp 97.6 0.0004 1.4E-08 51.9 8.7 92 42-133 21-146 (167)
232 4g26_A Pentatricopeptide repea 97.3 0.011 3.8E-07 53.4 16.8 159 10-174 29-200 (501)
233 2ff4_A Probable regulatory pro 97.2 0.013 4.4E-07 51.0 14.7 96 8-103 116-233 (388)
234 1ya0_A SMG-7 transcript varian 97.1 0.0042 1.4E-07 55.7 10.9 79 43-121 154-232 (497)
235 4g26_A Pentatricopeptide repea 97.0 0.018 6.2E-07 51.9 14.7 112 22-133 85-199 (501)
236 1zbp_A Hypothetical protein VP 96.7 0.028 9.4E-07 45.6 11.7 63 15-77 5-67 (273)
237 4gns_B Protein CSD3, chitin bi 96.7 0.0066 2.3E-07 57.1 9.3 62 6-67 336-397 (754)
238 1ya0_A SMG-7 transcript varian 96.6 0.018 6E-07 51.7 11.1 80 8-87 153-232 (497)
239 4gns_B Protein CSD3, chitin bi 96.5 0.014 4.6E-07 55.0 10.1 111 20-131 261-393 (754)
240 3txn_A 26S proteasome regulato 96.5 0.11 3.7E-06 45.0 15.1 176 6-181 18-213 (394)
241 3txn_A 26S proteasome regulato 95.7 0.12 4E-06 44.8 11.3 94 12-105 104-211 (394)
242 3mkq_B Coatomer subunit alpha; 95.4 0.35 1.2E-05 36.6 11.6 50 15-69 13-62 (177)
243 4b4t_R RPN7, 26S proteasome re 95.3 0.16 5.4E-06 44.8 11.2 99 9-107 133-240 (429)
244 3mkq_A Coatomer beta'-subunit; 95.1 0.15 5.2E-06 48.5 11.2 103 13-131 635-745 (814)
245 1zbp_A Hypothetical protein VP 95.0 0.27 9.1E-06 39.9 10.4 63 50-112 6-68 (273)
246 2ff4_A Probable regulatory pro 94.5 0.17 5.9E-06 43.9 9.0 62 8-69 172-233 (388)
247 3mkq_A Coatomer beta'-subunit; 94.3 0.67 2.3E-05 44.0 13.4 99 15-134 607-706 (814)
248 3kae_A CDC27, possible protein 94.3 1.2 4.2E-05 33.3 13.5 70 6-75 61-148 (242)
249 4b4t_P 26S proteasome regulato 94.1 1.1 3.7E-05 39.6 13.4 99 6-104 136-247 (445)
250 3spa_A Mtrpol, DNA-directed RN 93.1 2.3 7.8E-05 41.5 14.3 95 8-104 128-230 (1134)
251 4fhn_B Nucleoporin NUP120; pro 92.7 0.63 2.2E-05 46.4 10.5 114 14-131 819-960 (1139)
252 4fhn_B Nucleoporin NUP120; pro 92.5 0.99 3.4E-05 45.0 11.7 94 7-100 842-963 (1139)
253 4b4t_S RPN3, 26S proteasome re 92.4 0.17 5.7E-06 45.3 5.3 67 41-109 231-304 (523)
254 4b4t_R RPN7, 26S proteasome re 92.2 0.27 9.2E-06 43.3 6.5 59 74-132 130-191 (429)
255 3mkq_B Coatomer subunit alpha; 91.5 1.8 6.3E-05 32.7 9.5 54 40-101 7-60 (177)
256 1qsa_A Protein (soluble lytic 89.6 1.7 6E-05 40.0 9.5 80 23-103 268-347 (618)
257 3spa_A Mtrpol, DNA-directed RN 87.5 9 0.00031 37.5 12.8 91 42-132 128-224 (1134)
258 2vkj_A TM1634; membrane protei 86.8 1.7 5.7E-05 28.3 5.2 33 4-36 50-82 (106)
259 4b4t_S RPN3, 26S proteasome re 85.1 2.2 7.4E-05 38.2 7.0 68 5-74 229-303 (523)
260 4gq2_M Nucleoporin NUP120; bet 84.9 12 0.00043 36.4 12.9 94 13-110 816-933 (950)
261 4a5x_A MITD1, MIT domain-conta 84.8 1.7 5.9E-05 28.4 4.8 31 5-35 14-44 (86)
262 4b4t_P 26S proteasome regulato 84.5 20 0.00069 31.4 17.1 104 76-179 138-248 (445)
263 2w2u_A Hypothetical P60 katani 83.6 6.9 0.00024 25.3 7.3 30 6-35 18-47 (83)
264 3ax2_A Mitochondrial import re 82.5 5.5 0.00019 25.0 6.1 34 79-112 21-54 (73)
265 2w2u_A Hypothetical P60 katani 82.3 1.7 5.7E-05 28.3 3.9 17 87-103 31-47 (83)
266 1qsa_A Protein (soluble lytic 82.1 13 0.00043 34.4 11.0 123 10-133 217-343 (618)
267 1wy6_A Hypothetical protein ST 82.0 7.7 0.00026 28.0 7.4 81 20-104 74-154 (172)
268 3esl_A Checkpoint serine/threo 81.6 10 0.00034 29.2 8.6 78 28-106 58-146 (202)
269 2v6y_A AAA family ATPase, P60 81.5 1.8 6.3E-05 28.1 3.9 13 58-70 9-21 (83)
270 2crb_A Nuclear receptor bindin 80.2 3.6 0.00012 27.0 4.8 23 10-32 18-40 (97)
271 3t5x_A PCI domain-containing p 80.1 5.4 0.00018 30.9 6.8 36 5-40 12-47 (203)
272 3ax2_A Mitochondrial import re 79.9 6.5 0.00022 24.7 5.8 29 11-39 21-49 (73)
273 2v6y_A AAA family ATPase, P60 79.6 10 0.00034 24.5 7.4 31 5-35 9-39 (83)
274 2crb_A Nuclear receptor bindin 78.0 4.3 0.00015 26.7 4.6 28 76-103 16-43 (97)
275 2v6x_A Vacuolar protein sortin 75.9 5.1 0.00018 26.0 4.8 26 8-33 14-39 (85)
276 4gq2_M Nucleoporin NUP120; bet 75.3 9.6 0.00033 37.2 8.5 70 7-76 840-933 (950)
277 1wfd_A Hypothetical protein 15 74.9 5.6 0.00019 26.4 4.8 10 25-34 14-23 (93)
278 1wy6_A Hypothetical protein ST 74.0 22 0.00077 25.6 9.9 49 84-132 100-148 (172)
279 2cfu_A SDSA1; SDS-hydrolase, l 72.3 7.9 0.00027 36.0 6.8 54 40-93 448-501 (658)
280 2cpt_A SKD1 protein, vacuolar 71.0 6.6 0.00022 27.3 4.6 16 54-69 31-46 (117)
281 3t5x_A PCI domain-containing p 70.1 12 0.00041 28.9 6.4 33 42-74 15-47 (203)
282 2v6x_A Vacuolar protein sortin 68.4 6.4 0.00022 25.5 3.9 17 87-103 25-41 (85)
283 2rpa_A Katanin P60 ATPase-cont 68.3 4.7 0.00016 25.8 3.0 27 9-35 14-40 (78)
284 2cpt_A SKD1 protein, vacuolar 67.8 5.8 0.0002 27.6 3.7 32 57-103 15-46 (117)
285 1om2_A Protein (mitochondrial 67.3 10 0.00034 25.2 4.6 33 79-111 24-56 (95)
286 1om2_A Protein (mitochondrial 67.1 5.4 0.00018 26.5 3.2 29 11-39 24-52 (95)
287 1wfd_A Hypothetical protein 15 64.6 27 0.00094 23.0 8.0 15 57-71 12-26 (93)
288 2dl1_A Spartin; SPG20, MIT, st 63.7 14 0.00048 25.5 4.9 44 55-106 17-60 (116)
289 2cfu_A SDSA1; SDS-hydrolase, l 61.8 18 0.00061 33.7 6.9 56 73-128 447-502 (658)
290 3t5v_B Nuclear mRNA export pro 59.7 11 0.00038 33.2 4.8 87 22-108 141-254 (455)
291 2rpa_A Katanin P60 ATPase-cont 57.4 9.8 0.00033 24.3 3.0 23 46-68 17-39 (78)
292 3t5v_B Nuclear mRNA export pro 57.0 22 0.00074 31.4 6.2 63 12-74 181-254 (455)
293 3eab_A Spastin; spastin, MIT, 54.0 8.2 0.00028 25.2 2.3 17 55-71 11-27 (89)
294 4a5x_A MITD1, MIT domain-conta 52.1 24 0.00082 22.9 4.4 12 96-107 44-55 (86)
295 3re2_A Predicted protein; meni 49.9 1.2E+02 0.0039 25.9 8.9 45 60-104 276-325 (472)
296 2ijq_A Hypothetical protein; s 48.8 78 0.0027 23.3 8.6 61 44-104 35-104 (161)
297 3esl_A Checkpoint serine/threo 48.0 92 0.0031 23.9 9.8 68 5-73 78-147 (202)
298 3mv2_A Coatomer subunit alpha; 48.0 1.2E+02 0.0041 25.2 10.8 108 78-212 117-239 (325)
299 3re2_A Predicted protein; meni 47.7 65 0.0022 27.3 7.2 44 26-69 276-324 (472)
300 3myv_A SUSD superfamily protei 46.0 51 0.0018 28.8 7.0 47 57-103 164-218 (454)
301 3lew_A SUSD-like carbohydrate 44.8 53 0.0018 29.2 7.0 49 57-105 174-233 (495)
302 3myv_A SUSD superfamily protei 44.4 56 0.0019 28.6 7.0 48 23-70 164-219 (454)
303 2e2a_A Protein (enzyme IIA); h 44.1 37 0.0013 23.0 4.4 28 6-33 19-46 (105)
304 3lpz_A GET4 (YOR164C homolog); 43.7 1.4E+02 0.0049 24.9 13.1 24 10-33 38-61 (336)
305 2wpv_A GET4, UPF0363 protein Y 43.3 1.4E+02 0.0048 24.7 12.7 23 11-33 37-59 (312)
306 1wcr_A PTS system, N, N'-diace 43.2 39 0.0013 22.8 4.4 29 5-33 16-44 (103)
307 3mcx_A SUSD superfamily protei 42.4 65 0.0022 28.4 7.2 49 57-105 176-232 (477)
308 3kez_A Putative sugar binding 42.4 59 0.002 28.5 6.8 47 57-103 170-224 (461)
309 2vkj_A TM1634; membrane protei 41.5 63 0.0022 21.0 4.9 31 41-71 53-83 (106)
310 3kez_A Putative sugar binding 41.2 61 0.0021 28.4 6.7 47 24-70 171-225 (461)
311 2yhe_A SEC-alkyl sulfatase; hy 46.3 6 0.0002 36.8 0.0 52 42-93 462-513 (668)
312 3mcx_A SUSD superfamily protei 39.7 68 0.0023 28.3 6.8 48 23-70 176-231 (477)
313 2dl1_A Spartin; SPG20, MIT, st 39.7 57 0.0019 22.5 4.8 45 21-73 17-61 (116)
314 3lew_A SUSD-like carbohydrate 38.9 74 0.0025 28.2 7.0 48 24-71 175-233 (495)
315 3k1s_A PTS system, cellobiose- 38.4 51 0.0017 22.5 4.4 29 5-33 20-48 (109)
316 3l8r_A PTCA, putative PTS syst 36.6 60 0.0021 22.5 4.6 29 5-33 35-63 (120)
317 3u84_A Menin; MLL, JUND, ledgf 36.5 2.1E+02 0.0073 24.8 9.6 89 12-115 262-364 (550)
318 4gq4_A Menin; tumor suppressor 36.5 1.2E+02 0.004 26.3 7.2 90 12-116 247-350 (489)
319 4a1g_A Mitotic checkpoint seri 35.1 1.3E+02 0.0044 21.9 6.6 76 26-107 47-133 (152)
320 4b4t_O 26S proteasome regulato 34.7 2.1E+02 0.0073 24.3 10.7 89 16-104 85-198 (393)
321 3s6n_M SurviVal motor neuron p 33.7 33 0.0011 17.9 2.1 16 56-71 17-32 (37)
322 4gq4_A Menin; tumor suppressor 33.5 2.4E+02 0.0082 24.5 10.1 62 55-131 259-325 (489)
323 2ijq_A Hypothetical protein; s 32.6 1.5E+02 0.005 21.8 9.2 63 8-70 33-104 (161)
324 4ady_A RPN2, 26S proteasome re 31.4 1.8E+02 0.0063 28.3 8.5 95 6-103 412-518 (963)
325 3hdx_A SUSD homolog, SUSD supe 29.7 1.1E+02 0.0037 27.0 6.4 30 75-104 197-226 (478)
326 3u84_A Menin; MLL, JUND, ledgf 29.7 1.1E+02 0.0037 26.6 5.8 60 8-68 278-345 (550)
327 3qnk_A Putative lipoprotein; a 28.1 1.4E+02 0.0048 26.5 6.9 30 75-104 182-211 (517)
328 2oo2_A Hypothetical protein AF 27.9 99 0.0034 20.0 4.2 24 42-65 36-59 (86)
329 2pmr_A Uncharacterized protein 27.3 1.1E+02 0.0038 19.8 4.4 37 23-67 29-65 (87)
330 3jq1_A SUSD superfamily protei 27.0 1.1E+02 0.0038 26.9 6.0 29 75-103 180-208 (481)
331 2yhe_A SEC-alkyl sulfatase; hy 32.4 14 0.00047 34.4 0.0 54 75-128 461-514 (668)
332 3snx_A SUSD homolog, putative 26.4 1E+02 0.0034 27.1 5.6 48 57-104 160-220 (460)
333 2npu_A FKBP12-rapamycin comple 26.0 1.7E+02 0.0059 20.4 5.6 55 46-103 45-102 (126)
334 3qnk_A Putative lipoprotein; a 25.2 1.6E+02 0.0055 26.2 6.8 24 109-132 182-205 (517)
335 2xze_A STAM-binding protein; h 25.0 1.1E+02 0.0037 22.0 4.6 28 42-69 41-68 (146)
336 2ymb_A MITD1, MIT domain-conta 23.9 17 0.00056 29.2 0.0 34 22-70 19-52 (257)
337 3hdx_A SUSD homolog, SUSD supe 23.5 1.6E+02 0.0056 25.8 6.4 30 41-70 197-226 (478)
338 4aez_C MAD3, mitotic spindle c 23.3 2.7E+02 0.0091 21.7 9.9 47 59-105 132-180 (223)
339 3bu8_A Telomeric repeat-bindin 23.3 73 0.0025 24.7 3.4 45 49-93 122-166 (235)
340 3pmr_A Amyloid-like protein 1; 22.6 1.7E+02 0.0056 22.7 5.3 68 41-109 93-162 (219)
341 4a1g_A Mitotic checkpoint seri 22.6 2.2E+02 0.0076 20.6 8.9 57 71-133 67-125 (152)
342 3snx_A SUSD homolog, putative 22.6 2E+02 0.0069 25.1 6.8 31 41-71 191-221 (460)
343 3umh_A Amyloid beta A4 protein 22.4 2.5E+02 0.0086 21.6 6.3 69 41-110 86-156 (211)
344 3jq1_A SUSD superfamily protei 22.1 1.1E+02 0.0039 26.9 5.1 24 109-132 180-203 (481)
345 2pm7_A Protein WEB1, protein t 21.9 3.3E+02 0.011 23.3 7.8 25 9-33 250-274 (399)
346 3mkr_B Coatomer subunit alpha; 21.6 3.5E+02 0.012 22.4 12.2 111 78-212 105-230 (320)
347 2yin_A DOCK2, dedicator of cyt 21.3 3.3E+02 0.011 23.6 7.8 25 9-33 37-61 (436)
348 2ket_A Cathelicidin-6; antimic 20.9 33 0.0011 15.9 0.7 14 305-318 6-19 (27)
349 2cwy_A Hypothetical protein TT 20.6 1.9E+02 0.0064 18.9 5.6 55 47-103 7-67 (94)
350 2rkl_A Vacuolar protein sortin 20.4 1.4E+02 0.0047 17.3 4.5 29 7-35 20-48 (53)
351 3bqo_A Telomeric repeat-bindin 20.3 62 0.0021 24.8 2.5 53 47-99 123-175 (211)
352 3bu8_A Telomeric repeat-bindin 20.0 1.2E+02 0.0042 23.5 4.1 38 83-120 122-159 (235)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5e-30 Score=226.35 Aligned_cols=256 Identities=15% Similarity=0.160 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++...|++++|+..|+++++++|++..++..+|.
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
++..+|++++|++.|+++++.+|++..+|..+|.++...|++++|+..+. ..+.. .+.....+..+|.++...|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~----~p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--KAVTL----DPNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH--HHHHH----CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhc----CCCcHHHHHHHHHHHHHcC
Confidence 44444444444444444444444444444444444444444444433321 11111 1111122222333333333
Q ss_pred HHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914 164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A 230 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A 230 (320)
.+. +|+..+.+++.+.|. ++...|++++|+..|+++++++|.....+. +|.++...|++ |
T Consensus 218 ~~~-------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 218 IFD-------RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp CTT-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred CHH-------HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333 333333333333332 566667777777777777777666543333 66666666666 7
Q ss_pred HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914 231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL 277 (320)
Q Consensus 231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 277 (320)
++.|++++++ .|..+.+|.++|.++...|+++++...+++..
T Consensus 291 ~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 291 EDCYNTALRL-----CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777766 55556667777777777777766665555433
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.7e-30 Score=224.80 Aligned_cols=269 Identities=11% Similarity=0.083 Sum_probs=226.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+++++.+|+++.+|..+|
T Consensus 97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 176 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (320)
.++...|++++|+..|+++++++|++..++..+|.++...|++++|+.... ..+.. .+....+...+|.++...
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~--~al~~----~p~~~~~~~~l~~~~~~~ 250 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL--RALSL----SPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH--HHHHH----CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhh----CcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999976642 22222 223344555667777777
Q ss_pred hHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHH
Q 020914 163 HVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS 236 (320)
Q Consensus 163 ~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~ 236 (320)
|.+..+...++++++..+....... .++...|++++|+..|++++++.|.....+. +|.++...+++ |+..|++
T Consensus 251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776666654332111111 1788889999999999999999987754444 88889999999 9999999
Q ss_pred HhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccc
Q 020914 237 AACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW 282 (320)
Q Consensus 237 al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 282 (320)
++++ .|..+.+|.++|.++..+|+++++...+++.....+.
T Consensus 331 al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 331 ALEV-----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTS-----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9988 7778999999999999999999998888776554443
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=7.3e-28 Score=211.41 Aligned_cols=247 Identities=12% Similarity=-0.008 Sum_probs=199.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK-LNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+|..+.++..+|.++...|++++|+..|+++|+++|++..+|+++|.++..+|+ +++|+.+|+++++++|++..+|+++
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~ 172 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR 172 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.++..+|++++|+.+|+++|+++|++..+|..+|.++...|++++|+..+ ...+.. .+....++..+|.++..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~--~~al~l----~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV--DQLLKE----DVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH--HHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHH--HHHHHh----CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997764 233332 23334444455555544
Q ss_pred -hhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhc--ChhHHHHhhhhhhccccCcCCcc-chhhHHHHhh
Q 020914 162 -KHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLD--KEKTDTEKYAPIVNVDKAFESPH-THGSCFQFLR 227 (320)
Q Consensus 162 -~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg--~~~~A~~~~~~a~~~~~~~~~~~-~~g~~~~~~~ 227 (320)
.+....++ .+.++..+.+++.++|. ++...| ++++|++.+..+ +.+|...... .+|.++..++
T Consensus 247 l~~~~~eA~--~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAV--LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHH--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHh
Confidence 22222221 22234556666666665 455556 689999999888 7777664333 3888888874
Q ss_pred --------H-H--HHHHHHHH-hchhCCCCCCChhHhhhccccccccc
Q 020914 228 --------Q-Y--ADDSFSSA-ACLVAPKSIISYPQVWRGQGLRKWRH 263 (320)
Q Consensus 228 --------~-~--A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~~~~~l 263 (320)
+ + |++.|+++ +++ +|.....|..++..+...
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~-----DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK-----DTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHH
Confidence 3 4 99999999 888 888888999998765543
No 4
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=1.1e-27 Score=194.78 Aligned_cols=195 Identities=17% Similarity=0.192 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHh
Q 020914 84 ILEAM-----------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMS 152 (320)
Q Consensus 84 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 152 (320)
++..+ |++++|+..|+++++++|+++.++..+|.++...|++++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~--------------------- 140 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS--------------------- 140 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH---------------------
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHH---------------------
Confidence 99999 9999999999999999999999999998888777777666433
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCc-cchhhHHHHhhHH--
Q 020914 153 EKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESP-HTHGSCFQFLRQY-- 229 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~-~~~g~~~~~~~~~-- 229 (320)
|+++++++ ..... ..+|.++...|++
T Consensus 141 --------------------------------------------------~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 141 --------------------------------------------------LKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp --------------------------------------------------HHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred --------------------------------------------------HHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 22222222 11111 1266667777777
Q ss_pred HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 230 ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 230 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
|+..|++++++ +|.++.++.++|.++..+|+++++...+++
T Consensus 170 A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 170 ALAQYAKALEQ-----APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHH-----STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHh-----CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 77777777777 666677777777777777777777655543
No 5
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=4.2e-28 Score=212.20 Aligned_cols=263 Identities=14% Similarity=0.137 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhh
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKI----------KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKY 155 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
..+|++++|+..|+++++++|++..++..+ |.++...|++++|+.... ..+...+.. ....+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~--~~~~~~~~l 219 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL--EAAHQNGDM--IDPDLQTGL 219 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH--HHHHHSCSS--CCHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH--HHHHhCcCc--cCHHHHHHH
Confidence 999999999999999999999887766555 889999999999987753 222222110 033455566
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--
Q 020914 156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY-- 229 (320)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~-- 229 (320)
|.++...|.+..|...+++++...+......-. ++...|++++|+..|++++++.|.....+. +|.++..+|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 777777777777777777666554432211111 888999999999999999999998755554 89999999999
Q ss_pred HHHHHHHHhchhCCCCCCC-------hhHhhhcccccccccCcccchhhh
Q 020914 230 ADDSFSSAACLVAPKSIIS-------YPQVWRGQGLRKWRHSQQDGFFVQ 272 (320)
Q Consensus 230 A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~ 272 (320)
|+..|++++++.|....+. ...+|.++|.++..+|+.+.+...
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999976654321 467899999999999988765433
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=4.2e-27 Score=204.27 Aligned_cols=268 Identities=16% Similarity=0.168 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45566666666666777777777777766666666666666676666666776776666666666666666666666666
Q ss_pred HHccCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh------------
Q 020914 86 EAMEQYDDALSAFQTALQYNP---QSAEVSRKI------------KRVSQLAKDKKRAQEVENIRSNV------------ 138 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~------------ 138 (320)
...|++++|+..|+++++++| ++..++..+ +.++...|++++|+.........
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 666666666666666666666 555555555 45555566666665443210000
Q ss_pred ----------------HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------------h
Q 020914 139 ----------------DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------------A 187 (320)
Q Consensus 139 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------------~ 187 (320)
.......+....+...+|.++...|.+..+...+++++...+...... .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 000011111223344445555555555555555555554433322110 1
Q ss_pred hHHhhhcChhHHHHhhhhhhccccCcCCc-----cchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccc
Q 020914 188 KVYFLLDKEKTDTEKYAPIVNVDKAFESP-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRK 260 (320)
Q Consensus 188 ~~~~~lg~~~~A~~~~~~a~~~~~~~~~~-----~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 260 (320)
.++...|++++|+..+++++++.|..... ..+|.++...+++ |+..|+++++. +|..+.+|..+|.++
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-----EPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHH
Confidence 14778899999999999999988875321 1267888888888 99999999988 777799999999999
Q ss_pred cccCcccchhhhcccccc
Q 020914 261 WRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~ 278 (320)
..+|+++++...++....
T Consensus 317 ~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999998877776544
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=199.37 Aligned_cols=268 Identities=14% Similarity=0.091 Sum_probs=191.1
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++..+..+|..++..|++++|+..|+++++.+|.+..++..++.++..+|++++|+..++++++.+|+++.+++.+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 44556777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914 84 ILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (320)
Q Consensus 84 ~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (320)
++...| ++++|+..|+++++++|++..++..+|.++...|++++|+.... ..+... +........+|..+...
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~----~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYF--TAAQLM----KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHT----TTCSHHHHHHHHHHHHT
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHH--HHHHhc----cccHHHHHHHHHHHHHH
Confidence 888888 88888888888888888888888888888888888888866642 222221 11223344466667777
Q ss_pred hHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccC---------cCCcc-chhhHHHHhhHH
Q 020914 163 HVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKA---------FESPH-THGSCFQFLRQY 229 (320)
Q Consensus 163 ~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~---------~~~~~-~~g~~~~~~~~~ 229 (320)
|.+..+...+++++...+....... .++...|++++|+..+++++.+.+. ....+ .+|.++...+++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 7777777777777765544322111 1677777778888777777776422 11122 267777777777
Q ss_pred --HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccccccc
Q 020914 230 --ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLRKLW 282 (320)
Q Consensus 230 --A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 282 (320)
|+..|++++++ .|..+.+|.++|.++..+|+++++...++......+.
T Consensus 253 ~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 253 AEALDYHRQALVL-----IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHhh-----CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 77788888777 5556777777787777778777777776665444433
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=204.24 Aligned_cols=254 Identities=13% Similarity=0.038 Sum_probs=220.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.|.+...+..+|.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+..|+++++++|+++.+|..+
T Consensus 52 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 131 (330)
T 3hym_B 52 DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131 (330)
T ss_dssp CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHH
T ss_pred CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 46667788889999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.++...|++++|+..|++++++.|++..++..+|.++...|++++|+.... ..+. ..+....+...+|.++..
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~----~~~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS--QALS----IAPEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH--HHHT----TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH--HHHH----hCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999977743 2322 333445677788888999
Q ss_pred hhHHHHHHHHHHHHHHhHhhcccc-----Ch-------hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhH
Q 020914 162 KHVFSFVVETMETAVKSWHETSKV-----DA-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQ 228 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~-----~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~ 228 (320)
.|.+..+...+++++...+..... .+ .++..+|++++|+..+++++++.|.....+. +|.++...++
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 999999999999998876442211 11 1888999999999999999999998765555 8999999999
Q ss_pred H--HHHHHHHHhchhCCCCCCChhHhhhcccccc-cccCccc
Q 020914 229 Y--ADDSFSSAACLVAPKSIISYPQVWRGQGLRK-WRHSQQD 267 (320)
Q Consensus 229 ~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 267 (320)
+ |++.|++++++ .|.++.+|..+|.++ ..+|+.+
T Consensus 286 ~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 286 FENAVDYFHTALGL-----RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTTTTT-----CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHcc-----CCCchHHHHHHHHHHHHHhCchh
Confidence 9 99999999998 788899999999988 5555543
No 9
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=7.9e-27 Score=203.89 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
+..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 143 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHH----------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAEVSR----------------KIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 150 (320)
.+|++++|+..|+++++++|++..++. .++.++ ..|++++|+.... ..+...+... ...
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~--~a~~~~p~~~--~~~ 218 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFL--AAVRLDPTSI--DPD 218 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHH--HHHHHSTTSC--CHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHH--HHHHhCcCcc--cHH
Confidence 999999999999999999999887765 466666 8899999977743 2222221100 344
Q ss_pred HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh
Q 020914 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL 226 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~ 226 (320)
+...+|.++...|.+..|...+++++...+......- .++...|++++|+..|++++++.|.....+. +|.++...
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 5566677777777777777777777665433221111 1888999999999999999999987754544 89999999
Q ss_pred hHH--HHHHHHHHhchhCCCCC------CChhHhhhcccccccccCcccchhhhccc
Q 020914 227 RQY--ADDSFSSAACLVAPKSI------ISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 227 ~~~--A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
|++ |+..|++++.+.|.... +..+.+|.++|.++..+|+++.+......
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999 99999999998665522 23478999999999999999988655443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.8e-26 Score=207.15 Aligned_cols=272 Identities=17% Similarity=0.173 Sum_probs=209.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.+|.++..++.+|..++..|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHHHHHHHHHHHHHHhhhh--------
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKI------------KRVSQLAKDKKRAQEVENIRSNV-------- 138 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~-------- 138 (320)
|.+|..+|++++|+..|+++++++|++. .++..+ |.++...|++++|+.........
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999988 777666 55577788888887664321100
Q ss_pred --------------------HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC------------
Q 020914 139 --------------------DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD------------ 186 (320)
Q Consensus 139 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~------------ 186 (320)
.......+....++..++.++...|.+..|+..+++++...+......
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 000001111223344444555555555555555555554433221111
Q ss_pred ---hhHHhhhcChhHHHHhhhhhhccccCcC-----CccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcc
Q 020914 187 ---AKVYFLLDKEKTDTEKYAPIVNVDKAFE-----SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQ 256 (320)
Q Consensus 187 ---~~~~~~lg~~~~A~~~~~~a~~~~~~~~-----~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~ 256 (320)
..++...|++++|+..|++++++.|... ....+|.++...+++ |+..|++++.+ .|..+.+|..+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~l 335 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-----EPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHH
Confidence 1256778999999999999999988742 122378888888888 99999999988 77779999999
Q ss_pred cccccccCcccchhhhcccccc
Q 020914 257 GLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 257 ~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
|.++..+|+++++...++....
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999998877766443
No 11
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=1.3e-26 Score=198.76 Aligned_cols=266 Identities=10% Similarity=0.099 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHH--------------HH-HHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKI--------------KR-VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 149 (320)
+...|++++|+..|+++++.+|.+..++..+ +. ++...|++++|+.... ..+.. .+...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~~----~~~~~ 172 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH--AALEM----NPNDA 172 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH--HHHHH----STTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH--HHHhh----CCCCH
Confidence 9999999999999999999999998888777 66 6778899999977643 22222 12234
Q ss_pred HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH
Q 020914 150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF 225 (320)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~ 225 (320)
.+...++.++...|.+..+...+++++...+....... .++...|++++|+..+++++++.|.....+. +|.++..
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55666677777777777777777777665433221111 1888899999999999999999987654444 8999999
Q ss_pred hhHH--HHHHHHHHhchhCCCCCCC-------hhHhhhcccccccccCcccchhhhcccc
Q 020914 226 LRQY--ADDSFSSAACLVAPKSIIS-------YPQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 226 ~~~~--A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
.+++ |+..|++++.+.|....+. .+.+|..+|.++..+|+++.+...+...
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999 9999999999955432222 6889999999999999999987666653
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=1.1e-26 Score=201.52 Aligned_cols=237 Identities=9% Similarity=0.032 Sum_probs=160.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHH----HHhHHHHH-----HHHhhhhcchhhhh---------------------------h
Q 020914 120 QLAKDKKRAQEVENIRSNVDM----VQHLDEFK-----SEMSEKYGAEECWK---------------------------H 163 (320)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~---------------------------~ 163 (320)
...|++++|+........... ........ .......+..+... +
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999887542211111 00000000 00011112222223 3
Q ss_pred HHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccCcCCccc-------------hh
Q 020914 164 VFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-------------HG 220 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-------------~g 220 (320)
......+.+++|+..+.+++.+.|. ++...|++++|+..+++++++.|.....+. .|
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555555554443 666667777777777777777665533221 25
Q ss_pred hHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccccc
Q 020914 221 SCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPL 277 (320)
Q Consensus 221 ~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 277 (320)
.++...+++ |+..|++++...|... .....++..+|.++..+|+++++...++...
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVA-EYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 556666666 7777777776632211 1112446667777777787777776665533
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.4e-25 Score=202.74 Aligned_cols=264 Identities=18% Similarity=0.206 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
...+.+++.+|..++..|+|++|+..|++++..+| ++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 46789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCC-------------------------------------------------------
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQS------------------------------------------------------- 108 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~------------------------------------------------------- 108 (320)
++..+|++++|+..|+++++.+|.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999999998743
Q ss_pred ------------------------HHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHH-------HH---hHHHHHHHH
Q 020914 109 ------------------------AEVSRKIKRVSQL---AKDKKRAQEVENIRSNVDM-------VQ---HLDEFKSEM 151 (320)
Q Consensus 109 ------------------------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~-------~~---~~~~~~~~~ 151 (320)
..++..+|.+... .|++++|+.... ..+.. .+ ...+....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT--KAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH--HHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH--HHHHHhhhhhccCccccccChHHHHH
Confidence 5556666666554 788888877643 22221 11 112455667
Q ss_pred hhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhh
Q 020914 152 SEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLR 227 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~ 227 (320)
...+|..+...|.+..+...+++++...+. ....- .++...|++++|+..+++++.+.|.....+. +|.++...+
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 777788888888888888888888766544 11111 1778888999999999999988887655444 788888888
Q ss_pred HH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914 228 QY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 228 ~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
++ |+..|++++.. .|..+.+|..+|.++..+|+++++...+...
T Consensus 319 ~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 319 NYDQAGKDFDKAKEL-----DPENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTHHHHHHHHHHHT-----CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 99999999887 5666788888999999999888887666553
No 14
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.4e-25 Score=180.87 Aligned_cols=240 Identities=15% Similarity=0.137 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK 76 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~ 76 (320)
+..+..+..+|.+++..|++++|+.+|+++++.+ .++.++..+|.++..+|++++|+..++++++++|++ +.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 6789999999999999999999999999999999 899999999999999999999999999999999877 79
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhc
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG 156 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (320)
++..+|.++..+|++++|+..|+++++++|. +.++...|++++|+..... .....+....+...+|
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~ 146 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEA------EAYVNPEKAEEARLEG 146 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHH------HHHcCcchHHHHHHHH
Confidence 9999999999999999999999999999987 3455666777777655321 1122233445566667
Q ss_pred chhhhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914 157 AEECWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A 230 (320)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A 230 (320)
.++...|.+..+...+++++...+......-. ++...|++++|+..+++++++.|.....+. +|.++...+++ |
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777766654432211111 777888888888888888888887654444 78888888888 8
Q ss_pred HHHHHHHhchhCCC-CCCChhHhhhcccc
Q 020914 231 DDSFSSAACLVAPK-SIISYPQVWRGQGL 258 (320)
Q Consensus 231 ~~~~~~al~~~~~~-~~~~~~~~~~~~~~ 258 (320)
+..|++++++.+.. ..|....++..++.
T Consensus 227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 227 LETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 88888888883211 01555666665544
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.5e-25 Score=205.42 Aligned_cols=265 Identities=18% Similarity=0.217 Sum_probs=173.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+..+..++.+|..++..|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHH--------------------------------------------------
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSR-------------------------------------------------- 113 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------------------------------------------------- 113 (320)
++..+|++++|+..|+ ++.++|+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999988884 6666555433210
Q ss_pred ------------------HH--------HHHHHHHHHHHHHHHHHHHhhhhHHHHh---HHHHH----------------
Q 020914 114 ------------------KI--------KRVSQLAKDKKRAQEVENIRSNVDMVQH---LDEFK---------------- 148 (320)
Q Consensus 114 ------------------~l--------~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~---------------- 148 (320)
.+ +......+++++|+.... ..+...+. .....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~--~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH--SLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH--HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 00 111122234445544322 11111110 01111
Q ss_pred -----------------HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhc
Q 020914 149 -----------------SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVN 208 (320)
Q Consensus 149 -----------------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~ 208 (320)
......+|.++...|.+..+...+++++...+....... .++...|++++|+..+++++.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 122233333344444444444444444433222111100 166677777777777777777
Q ss_pred cccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccc
Q 020914 209 VDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 209 ~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
++|.....+. +|.++...|++ |+..|++++.. .|..+.+|.++|.++..+|+++++...++..
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-----FPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7776544443 67777777777 77777777777 5556777777777777777777776666553
No 16
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=2.6e-25 Score=186.24 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRK 81 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~l 81 (320)
+++.++..|.+++..|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..++++++ .|++ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999 4443 4569999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.++..+|++++|+..|+++++++|++..++..+|.++...|++++|+.... ..+.. .+....++..+|.....
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~al~~----~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME--KQIRP----TTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG--GGCCS----SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH--HHhhc----CCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987753 33322 22223344445522222
Q ss_pred hhHHHHHHHHHHHHHHhHhhccccC---hhHHhhhcC---hhHHHHhhhhhhccc---cCc------CCccchhhHHHHh
Q 020914 162 KHVFSFVVETMETAVKSWHETSKVD---AKVYFLLDK---EKTDTEKYAPIVNVD---KAF------ESPHTHGSCFQFL 226 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~lg~---~~~A~~~~~~a~~~~---~~~------~~~~~~g~~~~~~ 226 (320)
.+.+..|...++++++..+...... ..++..+|+ +++|+..+++++++. |.. .....+|.++...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 3355555555555555443321110 117777788 888999999999885 331 1122378888888
Q ss_pred hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccc
Q 020914 227 RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWR 262 (320)
Q Consensus 227 ~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 262 (320)
+++ |++.|++++++ +|.++.++-.++.+...
T Consensus 235 ~~~~~A~~~~~~al~~-----~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 235 RDKVKADAAWKNILAL-----DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHhc-----CccHHHHHHHhhhhhcc
Confidence 888 99999999999 78889999888765543
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.93 E-value=3e-24 Score=158.97 Aligned_cols=117 Identities=38% Similarity=0.643 Sum_probs=114.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|+.++++.++|+.++..|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg 88 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKA 88 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.++..+|++++|++.|+++++++|++..++..++.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999988763
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.7e-24 Score=194.19 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=148.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--------
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-------- 75 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------- 75 (320)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|++.
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666666666666655554
Q ss_pred -----------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 76 -----------------------------------------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 76 -----------------------------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.++..+|.+|...|++++|+..|+++++.+|+++.++..
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 216 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444444444444444444444444444444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH--------HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc-
Q 020914 115 IKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK--------SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV- 185 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~- 185 (320)
+|.++...|++++|+.... ..+...+...... .......+..+...|.+..+...+++++...+.....
T Consensus 217 l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 294 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVR--ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHH--HHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHH
Confidence 5555554555555444321 1111111100000 0001112455555566666666666665544331110
Q ss_pred ------ChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcc
Q 020914 186 ------DAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQ 256 (320)
Q Consensus 186 ------~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~ 256 (320)
...++...|++++|+..+++++.+.|.....+. +|.++...+++ |+..|++++++ .|..+.+|..+
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l 369 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH-----NENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcchHHHHHHH
Confidence 011788889999999999999999987755554 89999999999 99999999998 77779999999
Q ss_pred cc
Q 020914 257 GL 258 (320)
Q Consensus 257 ~~ 258 (320)
+.
T Consensus 370 ~~ 371 (450)
T 2y4t_A 370 EK 371 (450)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=7.1e-25 Score=203.74 Aligned_cols=264 Identities=13% Similarity=0.101 Sum_probs=220.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
+|...|++++|++.|+++++++|.+..+|..++.++...|++++|++.+.. .+.. .+.....+..++..+...|
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~----~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT--AARL----FQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHT----TTTCSHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHh----CccchHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999877532 1111 1223344555667777777
Q ss_pred HHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccc------cCc--CCccchhhHHHHhhHH--H
Q 020914 164 VFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVD------KAF--ESPHTHGSCFQFLRQY--A 230 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~------~~~--~~~~~~g~~~~~~~~~--A 230 (320)
.++.+...++++++..+....... .++...|++++|++.|++++++. |.. .....+|.++...|++ |
T Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 777777777777654433111111 18888999999999999999883 432 1222388889999999 9
Q ss_pred HHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
++.|++++++ .|..+.+|..+|.++..+|+++++...+++...
T Consensus 536 ~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 536 IDALNQGLLL-----STNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHH-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999988 677789999999999999999999877766444
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=2.8e-25 Score=194.04 Aligned_cols=256 Identities=14% Similarity=0.083 Sum_probs=194.2
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 020914 15 NEFFKAGNYLKAAA-LYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAME 89 (320)
Q Consensus 15 ~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~ 89 (320)
.++...|+|++|+. .|++++.+.|.++ ..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 36677899999999 9999999988874 669999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH------------HHHhhhhcc
Q 020914 90 QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK------------SEMSEKYGA 157 (320)
Q Consensus 90 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 157 (320)
++++|+..|+++++++|++..++..+|.++...|++++|+.... ..+...+...... .......+.
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR--DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTSTTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999987753 2222111110000 000112333
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhcc--ccC---hhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--
Q 020914 158 EECWKHVFSFVVETMETAVKSWHETS--KVD---AKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY-- 229 (320)
Q Consensus 158 ~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~---~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~-- 229 (320)
.. ..|.+..+...+++++...+... ... ..++...|++++|+..+++++.+.|.....+. +|.++...+++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 33 55666666666666665544411 111 11888899999999999999999988754544 89999999999
Q ss_pred HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 230 ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 230 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
|+..|++++.+ .|..+.+|.++|.++..+|+++++...++....
T Consensus 270 A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 270 AVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999998 777799999999999999999999877766443
No 21
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.3e-23 Score=195.20 Aligned_cols=247 Identities=11% Similarity=0.032 Sum_probs=214.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.+...+..++.++...|++++|+..+++++..+|+++.++..+|.+|...|++++|+..|+++++++|++..+|..+|.
T Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 415 (597)
T 2xpi_A 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAH 415 (597)
T ss_dssp TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
+|...|++++|++.|+++++..|++..++..++.++...|++++|++... ..+.. .+....++..++..+...|
T Consensus 416 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ--SSYAL----FQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH--HHHHH----CCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh----CCCChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999987753 22221 2223456677888888889
Q ss_pred HHHHHHHHHHHHHHhHhhccccC---h-------hHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--H
Q 020914 164 VFSFVVETMETAVKSWHETSKVD---A-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--A 230 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~---~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A 230 (320)
.++.|...++++++..++...-. . .++...|++++|+..++++++++|.....+. +|.++...|++ |
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999888765411110 1 1888999999999999999999987655554 89999999999 9
Q ss_pred HHHHHHHhchhCCCCCCChhHhhhccccccc
Q 020914 231 DDSFSSAACLVAPKSIISYPQVWRGQGLRKW 261 (320)
Q Consensus 231 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 261 (320)
++.|++++++ +|.++.+|..++.++.
T Consensus 570 ~~~~~~~l~~-----~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 570 ITHLHESLAI-----SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHH-----CTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhc-----CCCChHHHHHHHHHHh
Confidence 9999999999 8888999999988764
No 22
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=6.3e-24 Score=200.10 Aligned_cols=175 Identities=21% Similarity=0.217 Sum_probs=155.7
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+.|++++++.++|.++..+|++++|+.+|++|++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
|.++..+|++++|+++|+++++++|++..++.++|.++...|++++|++.+ ++.+. +.+....++..+|.++..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~--~~Al~----l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY--RTALK----LKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--HHHHH----HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH----hCCCChHHHhhhhhHHHh
Confidence 999999999999999999999999999999999999999999999997774 33333 333445566677777777
Q ss_pred hhHHHHHHHHHHHHHHhHhhc
Q 020914 162 KHVFSFVVETMETAVKSWHET 182 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~ 182 (320)
.+.+..+...++++++...+.
T Consensus 158 ~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTCCTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhChhH
Confidence 787778888888877766553
No 23
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.91 E-value=4.9e-24 Score=189.12 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCC
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISL------NPQ 73 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~ 73 (320)
|..+..++.+|..++..|++++|+..|+++++++|+++ .++..+|.+|..+|++++|+..+++++++ .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 67788999999999999999999999999999999986 68999999999999999999999999998 577
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH-----------------HHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKD-----------------KKRAQE 130 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~-----------------~~~A~~ 130 (320)
...++..+|.+|..+|++++|+..|++++++ .|....++..+|.++...|+ +++|+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 7899999999999999999999999999999 56667899999999999999 888877
Q ss_pred HHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc---------ChhHHhhhcChhHHHH
Q 020914 131 VENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV---------DAKVYFLLDKEKTDTE 201 (320)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---------~~~~~~~lg~~~~A~~ 201 (320)
.......+............++..+|.++...|.+..|...+++++...+..... ...++..+|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 6532222222222234455677778888888999999999999998877764321 1118889999999999
Q ss_pred hhhhhhccccCcC-------CccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCcccchhh
Q 020914 202 KYAPIVNVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQDGFFV 271 (320)
Q Consensus 202 ~~~~a~~~~~~~~-------~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ 271 (320)
.+++++.+.+... ....+|.++...+++ |+..|++++.+.+... .+....++..+|.++..+|+++++..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999876541 122378888888888 9999999998754332 22335689999999999999999887
Q ss_pred hccc
Q 020914 272 QFES 275 (320)
Q Consensus 272 ~~~~ 275 (320)
.+++
T Consensus 365 ~~~~ 368 (411)
T 4a1s_A 365 YAEQ 368 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=5.2e-24 Score=192.43 Aligned_cols=264 Identities=13% Similarity=0.018 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN---- 71 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---- 71 (320)
..+..+..+|.++..+|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.++++++++.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566788999999999999999999999986 67778899999999999999999999999999873
Q ss_pred ----CCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHH
Q 020914 72 ----PQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK---RAQEVENIRSNVDMVQ 142 (320)
Q Consensus 72 ----p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~ 142 (320)
++.+.++..+|.++... ++|++|+++|+++++++|+++.++..++.+....+.+. +|++. +...+...+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~--~~~al~l~p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDP--LRQAIRLNP 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHH--HHHHHHHCS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHH--HHHHhhcCC
Confidence 45688999999888765 47999999999999999999999999998877666553 34333 222332222
Q ss_pred hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCCccc-
Q 020914 143 HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFESPHT- 218 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~- 218 (320)
........+...++......+.+..+...+++++...+....... .+|...|++++|+..+++++++.|.....+.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 222222222222223333334444455555554443322211111 1667777777777777777777776543333
Q ss_pred hhhHHHHh-------------------hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhccc
Q 020914 219 HGSCFQFL-------------------RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFES 275 (320)
Q Consensus 219 ~g~~~~~~-------------------~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 275 (320)
+|.+|... +.+ |+..|++++.+ +|..+.+|.++|.++..+|+++++...+++
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA-----NDNLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH-----CTTTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc-----CCchhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 55554321 123 67777777776 556666677777777777777777665554
No 25
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.91 E-value=3.8e-23 Score=168.89 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=158.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.|.++..++.+|.+++..|++++|+..|+++++++| .+..+++++|.++..+|++++|+..|+++++++|+++.+++.+
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 455679999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH--HHHHh
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSA-------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF--KSEMS 152 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~ 152 (320)
|.+|..+|++++|+..|+++++++|+++ .++..+|.++...|++++|+..+. ..+.. .+. ....+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~--~al~~----~p~~~~~~~~ 156 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK--HATDV----TSKKWKTDAL 156 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHTTS----SCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH--HHHhc----CCCcccHHHH
Confidence 9999999999999999999999999999 669999999999999999987753 22222 222 34455
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHHhHhhccc-cChhHHhhhcChhHHHHhhhhhhccccCcC
Q 020914 153 EKYGAEECWKHVFSFVVETMETAVKSWHETSK-VDAKVYFLLDKEKTDTEKYAPIVNVDKAFE 214 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~ 214 (320)
..+|.++...|.. .++++......... .........+.+++|+..++++++++|...
T Consensus 157 ~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 157 YSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence 5556655544432 11222111110000 000144566778999999999999998753
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.5e-24 Score=197.50 Aligned_cols=263 Identities=13% Similarity=0.110 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----c--C-------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFK---AGNYLKAAALYTQAIK-----Q--D-------PSNPTLFSNRAAAFLHLVKLNKALADAET 66 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 66 (320)
|.++..++.+|.+++. .|++++|+..|+++++ + + |.++.++..+|.++...|++++|+..|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5678899999999887 8999999999999999 6 4 44578899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHH
Q 020914 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDE 146 (320)
Q Consensus 67 al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 146 (320)
+++.+|+ +.++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.... ..+... +
T Consensus 263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~----~ 335 (514)
T 2gw1_A 263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD--KAKELD----P 335 (514)
T ss_dssp HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH--HHHHTC----S
T ss_pred HHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHhC----h
Confidence 9999999 99999999999999999999999999999999999999999999999999999977643 222211 1
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCC------cc
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFES------PH 217 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~------~~ 217 (320)
....+...++.++...|.+..+...+++++...+....... .++...|++++|+..+++++.+.|.... .+
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 22335555677777777777788877777765443322211 1888899999999999999999887643 33
Q ss_pred -chhhHHHH---hhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchhhhcccccc
Q 020914 218 -THGSCFQF---LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 218 -~~g~~~~~---~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 278 (320)
.+|.++.. .+++ |+..|++++.. .|..+.+|..+|.++..+|+++++...+++...
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 38888888 9999 99999999988 677789999999999999999998877766443
No 27
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=1e-23 Score=173.21 Aligned_cols=215 Identities=16% Similarity=0.170 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|++..++..+|.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (320)
+..+|++++|+..|+++++.+|.+..++..+|.++...|++++|+.... ..+...+. ...+..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~--~~~~~~~~----~~~~~~----------- 163 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ--RAVELNEN----DTEARF----------- 163 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHH--HHHHHCTT----CHHHHH-----------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHHhCCc----cHHHHH-----------
Confidence 9999999999999999999999999999999999999999999976642 11111100 000000
Q ss_pred HHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914 165 FSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV 241 (320)
Q Consensus 165 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~ 241 (320)
....++...|++++|+..+++++...|.....+. +|.++...+++ |+..|++++++
T Consensus 164 --------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 222 (243)
T 2q7f_A 164 --------------------QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI- 222 (243)
T ss_dssp --------------------HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred --------------------HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence 0012667788889999999998888877644444 88888889998 99999999998
Q ss_pred CCCCCCChhHhhhccccccc
Q 020914 242 APKSIISYPQVWRGQGLRKW 261 (320)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~ 261 (320)
.|.++.++..++....
T Consensus 223 ----~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 223 ----QPDHMLALHAKKLLGH 238 (243)
T ss_dssp ----CTTCHHHHHHHTC---
T ss_pred ----CcchHHHHHHHHHHHh
Confidence 7778888887776443
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=7.6e-24 Score=185.87 Aligned_cols=205 Identities=10% Similarity=0.033 Sum_probs=161.1
Q ss_pred chHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+|.++.+|+.+|.++...|+ +++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++|+++|++..+|+++
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~l 206 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHR 206 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHH
Confidence 68889999999999999997 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHH---HHHHhhhhHHHHhHHHHHHHHhhhhcc
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQE---VENIRSNVDMVQHLDEFKSEMSEKYGA 157 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (320)
|.++..+|++++|+.+|+++++++|++..+|..+|.++.. .|..++|+. +..+...+. +.+....++..++.
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~----l~P~~~~a~~~l~~ 282 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK----LVPHNESAWNYLKG 282 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH----HSTTCHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 444466631 111223333 33333444555555
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhc--------C-hhHHHHhhhhh-hccccCcCCcc
Q 020914 158 EECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLD--------K-EKTDTEKYAPI-VNVDKAFESPH 217 (320)
Q Consensus 158 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg--------~-~~~A~~~~~~a-~~~~~~~~~~~ 217 (320)
++...|. ..++++++.+.+. ...|. +|..+| + .++|++.|+++ ++++|.....|
T Consensus 283 ll~~~g~-----~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 283 ILQDRGL-----SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHTTTCG-----GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHccCc-----cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 5554441 1233344444333 34443 566654 2 58999999999 99999754333
No 29
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=1.1e-22 Score=160.34 Aligned_cols=128 Identities=19% Similarity=0.256 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
+++..|+++|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+++++..+|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+...++++.|+..+.++++++|++..++..+|.++...|++++|++.+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY 130 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHH
Confidence 999999999999999999999999999999999999999999997764
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=8.4e-24 Score=184.82 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=177.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH-
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK- 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l- 81 (320)
.|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++..++..+
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 174 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc
Confidence 4778899999999999999999999999999999999999999999999999999999999999999999877666655
Q ss_pred ---------HHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 020914 82 ---------GCILEAMEQYDDALSAFQTALQYNPQ--SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (320)
Q Consensus 82 ---------g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 150 (320)
|.++...|++++|+..|+++++++|+ ++.++..+|.++...|++++|+.... ..+.. .+....
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~----~p~~~~ 248 (365)
T 4eqf_A 175 GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN--AALTV----RPEDYS 248 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHH----CTTCHH
T ss_pred cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHh----CCCCHH
Confidence 99999999999999999999999999 99999999999999999999987743 22222 223345
Q ss_pred HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccCcCC------------
Q 020914 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKAFES------------ 215 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~~~~------------ 215 (320)
++..+|.++...|.+..|+..+++++...+......- .++..+|++++|+..|++++++.|....
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 328 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGN 328 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHH
Confidence 6666777777777777777777777665443221111 1888999999999999999999887422
Q ss_pred ccc-hhhHHHHhhHH--HHHHHHHHh
Q 020914 216 PHT-HGSCFQFLRQY--ADDSFSSAA 238 (320)
Q Consensus 216 ~~~-~g~~~~~~~~~--A~~~~~~al 238 (320)
.+. +|.++..+++. +....++++
T Consensus 329 ~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 329 IWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 111 55555555555 555544443
No 31
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=1.8e-23 Score=179.37 Aligned_cols=273 Identities=15% Similarity=0.159 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCC
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQ 73 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~ 73 (320)
+.+...++..|..++..|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+..+++++.+ .|.
T Consensus 2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 4567889999999999999999999999999999998 478999999999999999999999999988 455
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKR 127 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~ 127 (320)
...++..+|.++..+|++++|+..|++++++.|.. ..++..+|.++...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 67899999999999999999999999999986654 3489999999999999 888
Q ss_pred HHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhH
Q 020914 128 AQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKT 198 (320)
Q Consensus 128 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~ 198 (320)
|+........+............+...+|.++...|.+..+...+++++...+...... ..++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 87765322222111222344556777788888888999999999999888776633211 118889999999
Q ss_pred HHHhhhhhhccccCcCC-------ccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCcccc
Q 020914 199 DTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQDG 268 (320)
Q Consensus 199 A~~~~~~a~~~~~~~~~-------~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 268 (320)
|+..+++++.+.+.... ...+|.++...+++ |+..|++++.+.+... .+....++..+|.++..+|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999988665421 22377788888888 9999999998754332 22335689999999999999999
Q ss_pred hhhhcccc
Q 020914 269 FFVQFESP 276 (320)
Q Consensus 269 ~~~~~~~~ 276 (320)
+...+++.
T Consensus 322 A~~~~~~a 329 (338)
T 3ro2_A 322 AMHFAEKH 329 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766553
No 32
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=1.4e-22 Score=163.41 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSN----------------RAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al 68 (320)
.+++.++.+|..++..|++++|+..|+++++.+|+++.+++. +|.+|..+|++++|+..|++++
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
+++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..+|.++...+..+.+
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999999999999998777655443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=5.2e-23 Score=172.23 Aligned_cols=220 Identities=15% Similarity=0.108 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 119 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence 55666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
++..+|++++|+..|+++++++|++......++.. ...|++++|+...
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~------------------------------- 167 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVL------------------------------- 167 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHH-------------------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHH-------------------------------
Confidence 77777777777777777777777666555444433 3445555554442
Q ss_pred HHHHHHHHHHHHHHhHhhccccCh--hHHhhhcChhHHHHhhhhhhccccCc-----CCccchhhHHHHhhHH--HHHHH
Q 020914 164 VFSFVVETMETAVKSWHETSKVDA--KVYFLLDKEKTDTEKYAPIVNVDKAF-----ESPHTHGSCFQFLRQY--ADDSF 234 (320)
Q Consensus 164 ~~~~a~~~~~~a~~~~~~~~~~~~--~~~~~lg~~~~A~~~~~~a~~~~~~~-----~~~~~~g~~~~~~~~~--A~~~~ 234 (320)
.+++...+....... ..+...++.++|+..+++++...|.. .....+|.++...|++ |+..|
T Consensus 168 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 168 ---------KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp ---------HHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------HHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 222221111100000 03344455566666666666655532 1112266666667776 77777
Q ss_pred HHHhchhCCCCCCChhHhhhcccccccccCcccchhhh
Q 020914 235 SSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFFVQ 272 (320)
Q Consensus 235 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 272 (320)
++++.+ +|.. |...+.++..+|++++++..
T Consensus 239 ~~al~~-----~p~~---~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 239 KLAVAN-----NVHN---FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHTT-----CCTT---CHHHHHHHHHHHHHHHC---
T ss_pred HHHHhC-----Cchh---HHHHHHHHHHHHHHHhhHHH
Confidence 777766 4433 33334566666666666544
No 34
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=184.73 Aligned_cols=271 Identities=16% Similarity=0.162 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW 74 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~ 74 (320)
..+..++.+|..++..|++++|+.+|+++++..|.+ +.++..+|.++...|++++|+..+++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456789999999999999999999999999999998 468999999999999999999999999987 3456
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH--------------------HHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD--------------------KKRA 128 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~--------------------~~~A 128 (320)
..++..+|.++..+|++++|+..|++++++.|.. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 7899999999999999999999999999997754 4589999999999999 9998
Q ss_pred HHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHH
Q 020914 129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTD 199 (320)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A 199 (320)
+........+.......+....++..+|.++...|.+..+...+++++...++..... ..++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8775322222111222344566777888888889999999999999988777643211 1188899999999
Q ss_pred HHhhhhhhccccCcC-------CccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCcccch
Q 020914 200 TEKYAPIVNVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQDGF 269 (320)
Q Consensus 200 ~~~~~~a~~~~~~~~-------~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 269 (320)
+..+++++.+.+... ....+|.++...|++ |+..|++++.+.+... .+..+.++.++|.++..+|+++++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999998876542 122377788888888 9999999998854433 233467899999999999999998
Q ss_pred hhhccc
Q 020914 270 FVQFES 275 (320)
Q Consensus 270 ~~~~~~ 275 (320)
...+++
T Consensus 327 ~~~~~~ 332 (406)
T 3sf4_A 327 MHFAEK 332 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.6e-23 Score=187.87 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
+.++..+|.++...|++++|+..|+++++.+|+ +.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 567999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFS 166 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
..|++++|+..|+++++++|++..++..+|.++...|++++|+.... ..+.. .+....+...+|.++...|.+.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~~~----~~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN--ETKLK----FPTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH--HHHHH----CTTCTHHHHHHHHHHHHTTCHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh----CCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999987743 22222 2223345556677777777777
Q ss_pred HHHHHHHHHHHhHhhccccCh---------hHHhhh----------cChhHHHHhhhhhhccccCcCCccc-hhhHHHHh
Q 020914 167 FVVETMETAVKSWHETSKVDA---------KVYFLL----------DKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL 226 (320)
Q Consensus 167 ~a~~~~~~a~~~~~~~~~~~~---------~~~~~l----------g~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~ 226 (320)
.|...+++++...+....... .++... |++++|+..++++++++|.....+. +|.++...
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 777777777776655433222 155555 8888888888888888877654444 78888888
Q ss_pred hHH--HHHHHHHHhch
Q 020914 227 RQY--ADDSFSSAACL 240 (320)
Q Consensus 227 ~~~--A~~~~~~al~~ 240 (320)
|++ |++.|++++++
T Consensus 476 g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 476 EKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 888 88888888877
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=182.44 Aligned_cols=274 Identities=13% Similarity=0.062 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 4 EAEEMSLKDKGNEFFKA--GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH---LVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
+..+..+..+|..+... ++|++|+.+|+++++++|+++.++..+|.++.. .+++++|++.|+++++++|+++.++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~ 212 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLK 212 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHH
Confidence 34567788888877765 579999999999999999999999999998665 4677899999999999999999999
Q ss_pred HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhh
Q 020914 79 FRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEK 154 (320)
Q Consensus 79 ~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (320)
..+|.++.. .|++++|+++|++++.++|++..++..+|.++...|++++|+.... ..+...+. ...+...
T Consensus 213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~--~al~~~p~----~~~~~~~ 286 (472)
T 4g1t_A 213 VLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK--KALEYIPN----NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHSTT----CHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH--HHHHhCCC----hHHHHHH
Confidence 999877665 4678899999999999999999999999999999999999987743 33332222 1122222
Q ss_pred hcchh------------hhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhHHHHhhhhhhccccC
Q 020914 155 YGAEE------------CWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (320)
Q Consensus 155 ~~~~~------------~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~A~~~~~~a~~~~~~ 212 (320)
+|.++ ...+........+++|+..+.++..++|. ++..+|++++|+..|++++++.+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 22222 22233445566667777777777666664 788889999999999999988765
Q ss_pred cCCc----cchhhH-HHHhhHH--HHHHHHHHhchhCCC-------------------CCCChhHhhhcccccccccCcc
Q 020914 213 FESP----HTHGSC-FQFLRQY--ADDSFSSAACLVAPK-------------------SIISYPQVWRGQGLRKWRHSQQ 266 (320)
Q Consensus 213 ~~~~----~~~g~~-~~~~~~~--A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~~~l~~~ 266 (320)
.... ..+|.+ +...+++ |+..|++|+++.|.. .+|..+.+|.++|.++..+|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 4221 113333 2344556 888888888764432 1567788999999999999999
Q ss_pred cchhhhccccccccccc
Q 020914 267 DGFFVQFESPLLRKLWF 283 (320)
Q Consensus 267 ~~~~~~~~~~~~~~~~~ 283 (320)
+++...+++++...+..
T Consensus 447 ~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 447 QQADEDSERGLESGSLI 463 (472)
T ss_dssp C----------------
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999998877655553
No 37
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=2.2e-23 Score=188.85 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.|.++..++.+|.++...|++ ++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+ ..++..+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l 176 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL 176 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence 345677788888888888888 88888888888888888888888888888888888888888888888887 6788888
Q ss_pred HHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 82 GCILEAM---------EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 82 g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
|.++..+ |++++|+..|+++++++|++..+|..+|.++...
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888 8888888888888888888888888887777665
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.89 E-value=1.6e-22 Score=164.15 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=134.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcC
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-----------VKLNKALADAETTISLN 71 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~l~ 71 (320)
.|+++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++..+ |++++|+..|+++++++
T Consensus 35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 6888999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHH
Q 020914 72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEM 151 (320)
Q Consensus 72 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 151 (320)
|+++.+++.+|.++..+|++++|+..|+++++++ +++.++..+|.++...|++++|+..+. ..+.. .+....+
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~----~P~~~~~ 187 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA--KALEQ----APKDLDL 187 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHH----STTCHHH
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH--HHHHh----CCCChHH
Confidence 9999999999999999999999999999999999 999999999999999999999976642 22222 2223334
Q ss_pred hhhhcchhhhhhHHHHHHHHHH
Q 020914 152 SEKYGAEECWKHVFSFVVETME 173 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~a~~~~~ 173 (320)
...++.++...|.+..|...++
T Consensus 188 ~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 188 RVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTC------------
T ss_pred HHHHHHHHHHccCHHHHHHHHH
Confidence 4444554444444444444433
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=6.9e-22 Score=163.48 Aligned_cols=210 Identities=14% Similarity=0.110 Sum_probs=170.7
Q ss_pred chHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~-a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+|.. +..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|++..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 4555 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914 82 GCILEAMEQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (320)
|.++...|++++|++.|+++++ ..|.+..++..+|.++...|++++|+.... ..+...+. ...+...+
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~~~~~~~~----~~~~~~~l---- 181 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFE--KSLRLNRN----QPSVALEM---- 181 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCSC----CHHHHHHH----
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCcc----cHHHHHHH----
Confidence 9999999999999999999999 889999999999999999999999976642 11111100 00000001
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHH
Q 020914 160 CWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSS 236 (320)
Q Consensus 160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~ 236 (320)
..++..+|++++|+..++++++..|.....+. .+.++...+++ |...+++
T Consensus 182 ---------------------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 182 ---------------------------ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp ---------------------------HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------------------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 12566778888888888888888776543333 67777778887 8889999
Q ss_pred HhchhCCCCCCChhHhhh
Q 020914 237 AACLVAPKSIISYPQVWR 254 (320)
Q Consensus 237 al~~~~~~~~~~~~~~~~ 254 (320)
++++ .|..+.++.
T Consensus 235 ~~~~-----~p~~~~~~~ 247 (252)
T 2ho1_A 235 LKRL-----YPGSLEYQE 247 (252)
T ss_dssp HHHH-----CTTSHHHHH
T ss_pred HHHH-----CCCCHHHHH
Confidence 8887 555555443
No 40
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=3.6e-23 Score=177.35 Aligned_cols=233 Identities=14% Similarity=0.106 Sum_probs=188.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH-
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK- 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l- 81 (320)
.|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++...+..+
T Consensus 51 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 130 (327)
T 3cv0_A 51 APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-----
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHh
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999998888887
Q ss_pred -------------HH-HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914 82 -------------GC-ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEF 147 (320)
Q Consensus 82 -------------g~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 147 (320)
|. ++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.... ..+.. .+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~~~~~----~~~ 204 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR--RAVEL----RPD 204 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHH----CTT
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHH--HHHHh----CCC
Confidence 77 78999999999999999999999999999999999999999999987743 22222 222
Q ss_pred HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh---hHHhhhcChhHHHHhhhhhhccccC------------
Q 020914 148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---KVYFLLDKEKTDTEKYAPIVNVDKA------------ 212 (320)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---~~~~~lg~~~~A~~~~~~a~~~~~~------------ 212 (320)
...+...+|.++...|.+..|...+++++...+......- .++..+|++++|+..+++++.+.|.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 3445556677777777777777777777665433211111 1888999999999999999999888
Q ss_pred cCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914 213 FESPHT-HGSCFQFLRQY--ADDSFSSAACLV 241 (320)
Q Consensus 213 ~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~ 241 (320)
....+. +|.++..++++ |...+++++...
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 332333 78888888888 999998888763
No 41
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=4.1e-22 Score=157.13 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
+++.+|+++|.+|..+|++++|+..|+++++++|+++.++..+|.+|..+|++++|+..+++++...|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhH
Q 020914 119 SQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKT 198 (320)
Q Consensus 119 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~ 198 (320)
+...++++.+..... ...... +....+... ...++..+|++++
T Consensus 83 ~~~~~~~~~a~~~~~--~a~~~~----~~~~~~~~~-------------------------------lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQ--RAIALN----TVYADAYYK-------------------------------LGLVYDSMGEHDK 125 (184)
T ss_dssp HHHTTCHHHHHHHHH--HHHHHC----TTCHHHHHH-------------------------------HHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHH--HHHHhC----ccchHHHHH-------------------------------HHHHHHHhCCchh
Confidence 998888888865532 111110 000000000 0127778899999
Q ss_pred HHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccccc
Q 020914 199 DTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLR 259 (320)
Q Consensus 199 A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 259 (320)
|++.|+++++++|.....+. +|.++..+|++ |++.|++|+++ +|.. +++++|.+
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~--a~~~lali 182 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK-----EEKK--AKYELALV 182 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----THHH--HHHCSCCS
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----CccC--HHHHHHhh
Confidence 99999999999998765555 89999999999 99999999988 5544 45555543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.88 E-value=2.9e-21 Score=162.01 Aligned_cols=236 Identities=15% Similarity=0.113 Sum_probs=178.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKG 77 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~ 77 (320)
+.|.++.+++.+|.++...|++++|+.+|+++++ |.++.+++.+|.+|.. .+++++|+..|+++++++ ++.+
T Consensus 1 a~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 1 MAEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 3688899999999999999999999999999999 7789999999999999 999999999999999985 8999
Q ss_pred HHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHhHHHHHH
Q 020914 78 YFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEFKS 149 (320)
Q Consensus 78 ~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 149 (320)
++.+|.+|.. .+++++|+..|+++++. +++.++..+|.++.. .+++++|+..+.. .+... ..
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~--a~~~~------~~ 146 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK--ACDLN------DG 146 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH--HHHTT------CH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH--HHhcC------cH
Confidence 9999999999 99999999999999998 489999999999999 8999999877532 22211 22
Q ss_pred HHhhhhcchhhh----hhHHHHHHHHHHHHHHhHhh-ccccChhHHhh----hcChhHHHHhhhhhhccccCcCCccchh
Q 020914 150 EMSEKYGAEECW----KHVFSFVVETMETAVKSWHE-TSKVDAKVYFL----LDKEKTDTEKYAPIVNVDKAFESPHTHG 220 (320)
Q Consensus 150 ~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~-~~~~~~~~~~~----lg~~~~A~~~~~~a~~~~~~~~~~~~~g 220 (320)
.....+|.++.. .+.+..+...++++++.-.. +......+|.. .+++++|+..++++++.++. .....+|
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~-~a~~~l~ 225 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENG-GGCFNLG 225 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCH-HHHHHHH
Confidence 334445555554 55666666666666543110 00000016666 78888888888888887662 2223377
Q ss_pred hHHHH----hhHH--HHHHHHHHhchhCCCCCCChhHhhhccc
Q 020914 221 SCFQF----LRQY--ADDSFSSAACLVAPKSIISYPQVWRGQG 257 (320)
Q Consensus 221 ~~~~~----~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~ 257 (320)
.++.. .+++ |+.+|++|+++ .|..+..++...
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~l~~~ 263 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL-----GAKGACDILKQL 263 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH-----TCHHHHHHHHTC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc-----CCHHHHHHHHHH
Confidence 77776 6677 88888888887 555555555433
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=5.1e-21 Score=154.95 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=165.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-cCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914 83 CILEAM-EQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (320)
Q Consensus 83 ~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (320)
.++... |++++|+..|+++++ .+|.+..++..+|.++...|++++|+.... ..+...+. ...+...++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~~~----~~~~~~~la--- 154 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK--RSLAAQPQ----FPPAFKELA--- 154 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHSTT----CHHHHHHHH---
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCC----CchHHHHHH---
Confidence 999999 999999999999999 677778999999999999999999976642 11111110 111111111
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcccc-CcCCccc-hhhHHHHhhHH--HHHHHH
Q 020914 160 CWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDK-AFESPHT-HGSCFQFLRQY--ADDSFS 235 (320)
Q Consensus 160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~-~~~~~~~-~g~~~~~~~~~--A~~~~~ 235 (320)
.++...|++++|+..+++++++.| .....+. .+.++...+.+ |...++
T Consensus 155 ----------------------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 155 ----------------------------RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp ----------------------------HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 255667777777777777777776 5433333 44445556666 666666
Q ss_pred HHhchhCCCCCCChhHhhh
Q 020914 236 SAACLVAPKSIISYPQVWR 254 (320)
Q Consensus 236 ~al~~~~~~~~~~~~~~~~ 254 (320)
.++.. .|..+.++.
T Consensus 207 ~~~~~-----~p~~~~~~~ 220 (225)
T 2vq2_A 207 QLQAN-----FPYSEELQT 220 (225)
T ss_dssp HHHHH-----CTTCHHHHH
T ss_pred HHHHh-----CCCCHHHHH
Confidence 66656 555555544
No 44
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=6.5e-22 Score=151.01 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..++.+|.+|+..|+|++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|+++.+++.+|
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 106 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIA 106 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45666667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHccCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSA-FQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
.+|..+|++++|++. ++++++++|+++.++...+.++..
T Consensus 107 ~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 107 ELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 777777777666654 367777777777777666665543
No 45
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.87 E-value=1.9e-21 Score=148.10 Aligned_cols=107 Identities=13% Similarity=0.088 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++|
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
.+|..+|++++|+.+|++++++.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999865
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=5.4e-23 Score=172.08 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=178.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQD----PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
++......|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc
Confidence 3344456789999999999999984 456899999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914 89 EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV 168 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 168 (320)
|++++|+..|+++++++|++..++..+|.++...|++++|+.... ..+...+.... ...
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~~~~~~-----------~~~-------- 149 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL--AFYQDDPNDPF-----------RSL-------- 149 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTCHH-----------HHH--------
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH--HHHHhCCCChH-----------HHH--------
Confidence 999999999999999999999999999999999999999976642 11111111000 000
Q ss_pred HHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCC
Q 020914 169 VETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSI 246 (320)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~ 246 (320)
........|++++|+..+++++...|.....+..+.++...+.+ |+..+++++...+. ..
T Consensus 150 -----------------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 211 (275)
T 1xnf_A 150 -----------------WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS-LA 211 (275)
T ss_dssp -----------------HHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH-HH
T ss_pred -----------------HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc-cc
Confidence 00122456889999999999888877765544444444444445 99999999977322 12
Q ss_pred CChhHhhhcccccccccCcccchhhhccccccc
Q 020914 247 ISYPQVWRGQGLRKWRHSQQDGFFVQFESPLLR 279 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 279 (320)
|..+.+|..+|.++..+|+++++...++.....
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 234788999999999999999998777765443
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.86 E-value=2.6e-20 Score=155.22 Aligned_cols=211 Identities=11% Similarity=0.106 Sum_probs=156.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EK 76 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~ 76 (320)
.|.++..++.+|..++..|+|++|+..|+++++.+|.+ +.+++.+|.+|..+|++++|+..|+++++++|++ +.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 46678999999999999999999999999999999999 8999999999999999999999999999998854 67
Q ss_pred HHHHHHHHHHH--------ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 020914 77 GYFRKGCILEA--------MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK 148 (320)
Q Consensus 77 ~~~~lg~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 148 (320)
+++.+|.++.. +|++++|+..|+++++.+|++..+...+..+....+....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~-------------------- 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARK-------------------- 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHH--------------------
Confidence 89999999999 99999999999999999999987765544332221111110
Q ss_pred HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCC----ccchhhHHH
Q 020914 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFES----PHTHGSCFQ 224 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~----~~~~g~~~~ 224 (320)
...+| .+|...|++++|+..|+++++..|.... ...+|.++.
T Consensus 151 ---~~~la-------------------------------~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 151 ---QYEAA-------------------------------RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp ---HHHHH-------------------------------HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred ---HHHHH-------------------------------HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 11112 2555666777777777777766665422 122666666
Q ss_pred Hh----------hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccch
Q 020914 225 FL----------RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGF 269 (320)
Q Consensus 225 ~~----------~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (320)
.+ +++ |+..|++++...|.. +....+...++.+...++++++.
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQIFPDS--PLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHHHHhhhh
Confidence 55 667 888888888763322 22244555556666666665553
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.1e-21 Score=162.42 Aligned_cols=213 Identities=10% Similarity=0.070 Sum_probs=176.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHH
Q 020914 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-------AEV 111 (320)
Q Consensus 39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 111 (320)
+.+..+..+|.++...|++++|+..|+++++.+ +++.++..+|.++..+|++++|+..|+++++++|++ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 346889999999999999999999999999999 999999999999999999999999999999999987 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh---
Q 020914 112 SRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK--- 188 (320)
Q Consensus 112 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--- 188 (320)
+..+|.++...|++++|+.... ..+...+. +..+... +.+++|+..+.+.+...|.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~--~a~~~~~~------------~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQ--KSLTEHRT------------ADILTKL-------RNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH--HHHHHCCC------------HHHHHHH-------HHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHH--HHHhcCch------------hHHHHHH-------hHHHHHHHHHHHHHHcCcchHH
Confidence 9999999999999999987643 22221111 2223333 4444455555555445554
Q ss_pred -------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccc
Q 020914 189 -------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGL 258 (320)
Q Consensus 189 -------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 258 (320)
++...|++++|+..+++++++.|.....+. +|.++...+++ |+..|++++.. .|..+.+|..+|.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CHHHHHHHHHHHH
Confidence 888999999999999999999988755444 89999999999 99999999998 7777999999999
Q ss_pred cccccCcccchhhhcccccc
Q 020914 259 RKWRHSQQDGFFVQFESPLL 278 (320)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~ 278 (320)
++..+|+++++...++....
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 99999999999877766443
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=2e-21 Score=162.49 Aligned_cols=206 Identities=7% Similarity=0.011 Sum_probs=166.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
.|.++.++..+|.++...|++++|+..++++++ .|.+ +.++..+|.++..+|++++|+..|+++++++|+++.++
T Consensus 33 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 111 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111 (272)
T ss_dssp TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence 466677899999999999999999999999999 4443 45699999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcch
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE 158 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (320)
..+|.+|..+|++++|+..|+++++++|.++.++..+|......+++++|+.... ..+... +........+|.+
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~----p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV--KVLELK----PNIYIGYLWRARA 185 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHS----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC----ccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999944444568888877642 222222 2223444455666
Q ss_pred hhhhhH---HHHHHHHHHHHHHhHhhccccC-----------hhHHhhhcChhHHHHhhhhhhccccCcCC
Q 020914 159 ECWKHV---FSFVVETMETAVKSWHETSKVD-----------AKVYFLLDKEKTDTEKYAPIVNVDKAFES 215 (320)
Q Consensus 159 ~~~~~~---~~~a~~~~~~a~~~~~~~~~~~-----------~~~~~~lg~~~~A~~~~~~a~~~~~~~~~ 215 (320)
+...+. ...+...++++++......... ..+|...|++++|++.++++++++|....
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHH
Confidence 666665 6667888888887764333211 11888899999999999999999998643
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.86 E-value=1.1e-21 Score=184.73 Aligned_cols=168 Identities=11% Similarity=0.187 Sum_probs=139.8
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
-.|+++.+++++|.+|..+|++++|+..|++|++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcC
Q 020914 116 KRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDK 195 (320)
Q Consensus 116 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~ 195 (320)
|.++...|++++|++.+. +.+...+. ....+..+ ..++..+|+
T Consensus 84 g~~l~~~g~~~~A~~~~~--kAl~l~P~----~~~a~~~L-------------------------------g~~~~~~g~ 126 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYT--RAIQINPA----FADAHSNL-------------------------------ASIHKDSGN 126 (723)
T ss_dssp HHHHHHTTCHHHHHHHHH--HHHHHCTT----CHHHHHHH-------------------------------HHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHH--HHHHhCCC----CHHHHHHH-------------------------------HHHHHHcCC
Confidence 999999999998866532 22211111 00000000 126778899
Q ss_pred hhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914 196 EKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 196 ~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
+++|++.|+++++++|.....+. +|.++..++++ |.+.|++++++
T Consensus 127 ~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 99999999999999998765554 88889999998 99999999988
No 51
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.8e-20 Score=138.37 Aligned_cols=117 Identities=27% Similarity=0.475 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++..+..+|..++..|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|+++.+|+.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYN------PQSAEVSRKIKRVSQ 120 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~ 120 (320)
++..+|++++|+..|+++++++ |++..++..++.+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999888877654
No 52
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=172.38 Aligned_cols=262 Identities=9% Similarity=0.073 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------ 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------ 74 (320)
+..+..+|.+++..|++++|+.+|++++.+ .|..+.++..+|.++..+|++++|+..+++++.+.|..
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 678999999999999999999999999977 34457899999999999999999999999999987653
Q ss_pred HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
..++..+|.+|...|+ +++|+..|++++++ .|....++..+|.++...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 5589999999999999 99999999999988 344466899999999999999999
Q ss_pred HHHHHHhhhhHHHHh--HHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChh
Q 020914 129 QEVENIRSNVDMVQH--LDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEK 197 (320)
Q Consensus 129 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~ 197 (320)
+.... ..+..... .......++..+|.++...|.+..+...+++++...+...... ..++...|+++
T Consensus 207 ~~~~~--~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 207 VIAHE--QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 87753 33332222 2334455777788888889999999999999988776642111 11888999999
Q ss_pred HHHHhhhhhhccccCcCC-------ccchhhHHHHhhHH--HHHHHHHHhchhCCCC-CCChhHhhhcccccccccCccc
Q 020914 198 TDTEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLVAPKS-IISYPQVWRGQGLRKWRHSQQD 267 (320)
Q Consensus 198 ~A~~~~~~a~~~~~~~~~-------~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 267 (320)
+|+..+++++++.+.... ...+|.++...|++ |+..|++++.+.+... .+....++..+|.++..+|+..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999999988655421 22378888888888 9999999998854433 3345778899999999888876
Q ss_pred chh
Q 020914 268 GFF 270 (320)
Q Consensus 268 ~~~ 270 (320)
...
T Consensus 365 ~~~ 367 (406)
T 3sf4_A 365 STN 367 (406)
T ss_dssp CC-
T ss_pred HHH
Confidence 543
No 53
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.85 E-value=3.4e-20 Score=141.09 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=110.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.++..++.+|..++..|++++|+..|++++..+|.++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
.+|..+|++++|+..|+++++++|+++........+..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 99999999999999999999999998876544444433
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=9.4e-20 Score=155.75 Aligned_cols=236 Identities=10% Similarity=0.012 Sum_probs=175.6
Q ss_pred hHHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------ccCH-------HHHH
Q 020914 4 EAEEMSLKDKGNEFFKA----GNY----LKAAALYTQAIKQDPSNPTLFSNRAAAFLH-------LVKL-------NKAL 61 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~ 61 (320)
|.+...|......-... ++. ++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 45556666665554443 243 789999999999999999999999999874 5885 9999
Q ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 020914 62 ADAETTIS-LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-VSRKIKRVSQLAKDKKRAQEVENIRSNVD 139 (320)
Q Consensus 62 ~~~~~al~-l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 139 (320)
..|++|++ ++|++..+|..+|.++...|++++|+..|+++++++|.++. +|..+|.++...|++++|...+. ..+.
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~a~~ 162 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK--KARE 162 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH--HHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHH--HHHh
Confidence 99999999 79999999999999999999999999999999999999987 99999999999999999977653 2222
Q ss_pred HHHhHHHHHHHHhhhhcchhh-hhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhcc---ccC
Q 020914 140 MVQHLDEFKSEMSEKYGAEEC-WKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNV---DKA 212 (320)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~---~~~ 212 (320)
..+. ...++...+.... ..|....+...|+++++.++....+.-. .+..+|+.++|+..|++++.. .|.
T Consensus 163 ~~p~----~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 163 DART----RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp STTC----CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred cCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 1111 1112211222211 1466667777777777666543322222 667789999999999999995 443
Q ss_pred -cCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCC
Q 020914 213 -FESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKS 245 (320)
Q Consensus 213 -~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~ 245 (320)
....|. .+.+....|++ |...++++++..|...
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 222333 56666777777 9999999998855443
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=162.65 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=176.7
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--- 70 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--- 70 (320)
..|..+.++..+|.++...|++++|+..|++++++ .|..+.++..+|.+|...|++++|+..+++++.+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999985 6777899999999999999999999999999988
Q ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020914 71 -----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSN 137 (320)
Q Consensus 71 -----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 137 (320)
+|....++..+|.++..+|++++|+..|++++++. |....++..+|.++...|++++|+.... ..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~--~a 179 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ--RA 179 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--HH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HH
Confidence 45668899999999999999999999999999984 5567789999999999999999987753 33
Q ss_pred hHHHHhH----HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc--ccChh----------------HHhhhcC
Q 020914 138 VDMVQHL----DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS--KVDAK----------------VYFLLDK 195 (320)
Q Consensus 138 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~--~~~~~----------------~~~~lg~ 195 (320)
+...... .+....+...++.++...|.+..|...+++++...+... ...+. .+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 3322211 344556677778888888888888888888887654421 11111 3333445
Q ss_pred hhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchh
Q 020914 196 EKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLV 241 (320)
Q Consensus 196 ~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~ 241 (320)
+.+++..+..+....|.....+. +|.++...|++ |++.|++|+++.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 55555566666655554433333 77788888888 888888888774
No 56
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.85 E-value=6.2e-22 Score=151.11 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY 91 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~ 91 (320)
.+|.++...|++++|+..+++++..+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 92 DDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 92 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
++|+.+|+++++++|+++.++..+|.++...|++++|..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 999999999999999999999999999999998876643
No 57
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=3.5e-21 Score=181.69 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=108.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAI--------KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
.|.++.+++..| ...|++++|++.|++++ +.+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 355566666666 78999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK 126 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 126 (320)
+.+|+.+|.++..+|++++|++.|+++++++|++..++..+|.++...|+++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTD 518 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999999999998888765444433
No 58
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=2.4e-21 Score=164.25 Aligned_cols=236 Identities=7% Similarity=-0.032 Sum_probs=182.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
...+..|+|++|+..+++....+|++ .++...++.+|..+|++++|+..++.. +|....++..++..+...+++++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHH
Confidence 55678889999999888877777776 357788888999999999988877652 56567788888888888888999
Q ss_pred HHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHH
Q 020914 94 ALSAFQTALQY--NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVET 171 (320)
Q Consensus 94 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 171 (320)
|++.+++++.. +|+++.++..+|.++...|++++|++.... +....+....+.++...|..+.|...
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999888875 588888888899988888999988776532 12233455556666667777777777
Q ss_pred HHHHHHhHhhccccCh-h----HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCC
Q 020914 172 METAVKSWHETSKVDA-K----VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAP 243 (320)
Q Consensus 172 ~~~a~~~~~~~~~~~~-~----~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~ 243 (320)
+++++...+......- . .+...|++++|+..|+++++..|.....+. +|.++..+|++ |++.|++++.+
T Consensus 153 l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--- 229 (291)
T 3mkr_A 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--- 229 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 7776655433211100 1 222348999999999999999887755554 89999999999 99999999998
Q ss_pred CCCCChhHhhhcccccccccCcccch
Q 020914 244 KSIISYPQVWRGQGLRKWRHSQQDGF 269 (320)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 269 (320)
+|.++++|.++|.++..+|+..++
T Consensus 230 --~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 230 --DSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCCHHH
Confidence 888899999999999999998764
No 59
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.85 E-value=5.3e-20 Score=138.96 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=114.3
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++..+|++++|+..|++++.++|+++.+++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
|.++..+|++++|+..|+++++++|+++........+....+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776665555544443
No 60
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.84 E-value=1.2e-20 Score=142.33 Aligned_cols=117 Identities=16% Similarity=0.234 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhc--
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPT-----LFSNRAAAFLHLVKLNKALADAETTISL-- 70 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 70 (320)
..+..+.++|+.++..|+|++|+..|++||+++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 71 -----NPQWEKGY----FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 71 -----~p~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998877776665443
No 61
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.84 E-value=5.9e-20 Score=135.97 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------H
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------E 75 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~ 75 (320)
.++.+.++.++|+.++..|+|++|+.+|++||+++|+++.+|.++|.+|..+|++++|+..|+++++++|++ .
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998875 3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.+|.++|.++..+|++++|++.|+++|+.+|+ ++....+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 58999999999999999999999999999885 5544443
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.84 E-value=6.8e-20 Score=154.58 Aligned_cols=106 Identities=31% Similarity=0.479 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++..++.+|..++..|++++|+..|++++..+|+++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+|..+|++++|+..|+++++++|++.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccch
Confidence 99999999999999999999999764
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=3.2e-20 Score=163.42 Aligned_cols=231 Identities=10% Similarity=0.009 Sum_probs=178.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQ---DP---SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK 76 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~ 76 (320)
++.+|..++..|++++|+..|++|+++ .| ..+.+++.+|.+|..+|++++|+..+++|+++.+.. ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 444999999999999999999999987 23 246899999999999999999999999999985443 46
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-H-HHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSA------EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-D-EFK 148 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~ 148 (320)
++..+|.+|..+|++++|+.+|++++++.|... .++.++|.++...|++++|+.... ..+...... . +..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~--~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK--RAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHhhccchhH
Confidence 899999999999999999999999999866443 589999999999999999988753 333322211 1 344
Q ss_pred HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc--------ChhHHhhhcC---hhHHHHhhhhhhccccCcCCcc
Q 020914 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV--------DAKVYFLLDK---EKTDTEKYAPIVNVDKAFESPH 217 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~--------~~~~~~~lg~---~~~A~~~~~~a~~~~~~~~~~~ 217 (320)
..+...+|.++...|.+..|...+++++...+..... ...++...|+ ..+|+..+++.-..........
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 343 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6677778888888888888888888888776542211 1116667777 7778777777622211112223
Q ss_pred chhhHHHHhhHH--HHHHHHHHhchhC
Q 020914 218 THGSCFQFLRQY--ADDSFSSAACLVA 242 (320)
Q Consensus 218 ~~g~~~~~~~~~--A~~~~~~al~~~~ 242 (320)
.+|.+|...|++ |+..|++|+.+..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 488888889998 9999999998743
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.83 E-value=3.7e-20 Score=164.06 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL------NPQW 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~ 74 (320)
+..+..+|.++...|++++|+..|++++++ .|..+.++..+|.+|..+|++++|+..|++++.+ .|..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 86 SAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence 468999999999999999999999999988 5667899999999999999999999999999998 5667
Q ss_pred HHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQ-----------------YDDALSAFQTALQYN------PQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
..++..+|.+|..+|+ +++|+..|++++++. |....++..+|.++...|++++|+..
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8899999999999999 999999999999874 33456899999999999999999877
Q ss_pred HHHhhhhHHHH--hHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHHH
Q 020914 132 ENIRSNVDMVQ--HLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTDT 200 (320)
Q Consensus 132 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A~ 200 (320)
.. ..+.... ........++..+|.++...|.+..+...+++++...++..... ..++...|++++|+
T Consensus 246 ~~--~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 246 HQ--ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HH--HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH--HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 53 3333222 22233445677788888889999999999999988777542111 11888999999999
Q ss_pred HhhhhhhccccCcC-------CccchhhHHHHhhHH--HHHHHHHHhch
Q 020914 201 EKYAPIVNVDKAFE-------SPHTHGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 201 ~~~~~a~~~~~~~~-------~~~~~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
..+++++.+.+... ....+|.++..+|++ |+..|++|+.+
T Consensus 324 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999998865542 222378888888888 99999999988
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.83 E-value=2.3e-19 Score=146.33 Aligned_cols=210 Identities=12% Similarity=0.100 Sum_probs=155.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP-QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
+.++..++.+|.++...|++++|+..|+++++++| .+..+++.+|.++..+|++++|+..|+++++++|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 56789999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHh
Q 020914 117 RVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYF 191 (320)
Q Consensus 117 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~ 191 (320)
.++...|++++|+... ...+...+. ...+...++.++...|......+.+++|+..+.+++.++|. ++.
T Consensus 84 ~~~~~~~~~~~A~~~~--~~al~~~p~----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 84 AAYRDMKNNQEYIATL--TEGIKAVPG----NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHTTCHHHHHHHH--HHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHH--HHHHHHCCC----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 9999999999998774 333332222 22222333444555555555666666677777777766664 344
Q ss_pred hhcCh--hHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccccc
Q 020914 192 LLDKE--KTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLR 259 (320)
Q Consensus 192 ~lg~~--~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 259 (320)
.+|.. ..+...++++..+.+... ....+......+.| |+..|++++++ +|..+.++..++.+
T Consensus 158 ~l~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~~~~~~~l~~i 223 (228)
T 4i17_A 158 SLGVLFYNNGADVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAVTL-----SPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCHHHHHHHHHH
Confidence 44432 233334466666654431 11244445566667 99999999999 77777777766544
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=6.2e-20 Score=157.16 Aligned_cols=235 Identities=11% Similarity=0.117 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------ 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------ 74 (320)
+..+..+|.++...|++++|+..+++++++ .|..+.++..+|.++..+|++++|+..+++++++.|..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 678999999999999999999999999987 44557899999999999999999999999999986643
Q ss_pred HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQ--------------------YDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
..++..+|.++..+|+ +++|+..+++++.+ .|....++..+|.++...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4489999999999999 99999999999987 334456899999999999999999
Q ss_pred HHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHH
Q 020914 129 QEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTD 199 (320)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A 199 (320)
+.....................+...+|.++...|.+..+...+++++...+...... ..++...|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 8775322222222222334455777788888888999999999999888776542111 1188899999999
Q ss_pred HHhhhhhhccccCcCC-------ccchhhHHHHhhHH--HHHHHHHHhchh
Q 020914 200 TEKYAPIVNVDKAFES-------PHTHGSCFQFLRQY--ADDSFSSAACLV 241 (320)
Q Consensus 200 ~~~~~~a~~~~~~~~~-------~~~~g~~~~~~~~~--A~~~~~~al~~~ 241 (320)
+..+++++.+.+.... ...+|.++...|++ |+..|++++.+.
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999999988655422 22378888888888 999999999873
No 67
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=4.7e-19 Score=144.41 Aligned_cols=111 Identities=19% Similarity=0.185 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEK---GYF 79 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~ 79 (320)
.+..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.+|..+|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46789999999999999999999999999999876 479999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 80 RKGCILEA------------------MEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 80 ~lg~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
.+|.++.. +|++++|+..|+++++.+|+++.++..+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~ 137 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK 137 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 99999986 57999999999999999999987765433
No 68
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.83 E-value=2.7e-19 Score=138.40 Aligned_cols=117 Identities=31% Similarity=0.407 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.+.++..++.+|.+++..|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.+|..+|++++|+.+|+++++++|++..++...+...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999777666543
No 69
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.82 E-value=1.6e-19 Score=139.45 Aligned_cols=123 Identities=27% Similarity=0.399 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ------------------DPSNPTLFSNRAAAFLHLVKLNKALADAET 66 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 66 (320)
..+..+..+|..++..|+|++|+..|.+++.+ +|.++.++.++|.||..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 46789999999999999999999999999999 777789999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHH
Q 020914 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA-EVSRKIKRVSQLAKDKKR 127 (320)
Q Consensus 67 al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~ 127 (320)
+++++|+++.+|+.+|.+|..+|++++|+..|+++++++|+++ .+...++.+....+...+
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 778888887766655443
No 70
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=4.2e-19 Score=145.56 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++.+|+++.++..+|
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 132 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+...
T Consensus 133 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 133 TVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997664
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.82 E-value=5.3e-19 Score=138.41 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
+..+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++...|++++|++.|+++++.+|.+..++..+|.++...|++++|+...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997764
No 72
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=2.1e-19 Score=152.29 Aligned_cols=234 Identities=8% Similarity=-0.059 Sum_probs=179.2
Q ss_pred chHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHH
Q 020914 3 AEAE-EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYF 79 (320)
Q Consensus 3 ~p~~-a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~ 79 (320)
+|.+ .++...++..+...|++++|+..++. .+|....++..++..+...|++++|++.+++++.. +|+++.+++
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~ 105 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLL 105 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHH
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHH
Confidence 4555 45778889999999999999998866 26667788999999999999999999999999875 699999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (320)
.+|.++...|++++|++.|++ |++..++..+|.++...|++++|+.... ..+...+... ...+...+....
T Consensus 106 ~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~--~~~~~~p~~~--~~~l~~a~~~l~ 176 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELK--KMQDQDEDAT--LTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH--HHHhhCcCcH--HHHHHHHHHHHH
Confidence 999999999999999999998 8999999999999999999999987753 2222222110 011111111222
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH---HHH
Q 020914 160 CWKHVFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY---ADD 232 (320)
Q Consensus 160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~---A~~ 232 (320)
...|.+..|...+++++...+....+.-. ++..+|++++|+..++++++++|.....+. +|.++..+|++ +.+
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 23356666777777666654432222111 788999999999999999999998865554 88888888887 568
Q ss_pred HHHHHhchhCCCCCCChhHhh
Q 020914 233 SFSSAACLVAPKSIISYPQVW 253 (320)
Q Consensus 233 ~~~~al~~~~~~~~~~~~~~~ 253 (320)
.+++++++ +|+++.+.
T Consensus 257 ~~~~~~~~-----~P~~~~~~ 272 (291)
T 3mkr_A 257 YLSQLKDA-----HRSHPFIK 272 (291)
T ss_dssp HHHHHHHH-----CTTCHHHH
T ss_pred HHHHHHHh-----CCCChHHH
Confidence 99999999 67666553
No 73
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.82 E-value=7.4e-19 Score=152.02 Aligned_cols=128 Identities=21% Similarity=0.317 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.|..+.++..+|.+++..|++++|+..|+++++++|.+ ..++.++|.+|..+|++++|+.+|+++
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 47789999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 020914 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQE 130 (320)
Q Consensus 68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 130 (320)
++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++...|++++|..
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998853
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1e-18 Score=149.36 Aligned_cols=236 Identities=11% Similarity=-0.041 Sum_probs=183.3
Q ss_pred chHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFK-------AGNY-------LKAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.|.++..|+..|..+.. .|++ ++|+..|++|++ ++|++..+|..+|.++...|++++|+..|+++
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 57889999999999874 5885 999999999999 79999999999999999999999999999999
Q ss_pred HhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHhHH
Q 020914 68 ISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL-AKDKKRAQEVENIRSNVDMVQHLD 145 (320)
Q Consensus 68 l~l~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~ 145 (320)
++++|+++. +|..+|.++...|++++|+..|+++++.+|.+..+|...+.+... .|++++|...++ ..+. ..
T Consensus 126 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~--~al~----~~ 199 (308)
T 2ond_A 126 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE--LGLK----KY 199 (308)
T ss_dssp HTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHH--HHHH----HH
T ss_pred HhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHH----hC
Confidence 999999987 999999999999999999999999999999999888777666433 588888876642 2222 23
Q ss_pred HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhH--h--hccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc
Q 020914 146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSW--H--ETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT 218 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~--~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~ 218 (320)
+....+...++..+...|....+...|++++... + +...+... .....|+.+.|...+++++++.|.......
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~ 279 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 279 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch
Confidence 3345666777777777788888888888877631 1 11111111 556789999999999999999997543321
Q ss_pred hhhHHHHhhHHHHHHHHHHhchhCCCCCCChhHhhhcccc
Q 020914 219 HGSCFQFLRQYADDSFSSAACLVAPKSIISYPQVWRGQGL 258 (320)
Q Consensus 219 ~g~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 258 (320)
.+.+ ..+ .+.+.+ +|..++++..+|-
T Consensus 280 ~~~~---~~r------~~~l~~-----~P~~~~~ln~lgY 305 (308)
T 2ond_A 280 TALL---VDR------YKFMDL-----YPCSASELKALGY 305 (308)
T ss_dssp HHHH---HTT------TCBTTB-----CSSCHHHHHTTTC
T ss_pred HHHH---HHH------HHhccc-----CCCCHHHHHhcCC
Confidence 2111 111 144455 7777888888774
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=2e-19 Score=169.78 Aligned_cols=179 Identities=12% Similarity=-0.019 Sum_probs=147.4
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK 162 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (320)
.++..+|++++ ++.|+++++++|++..++.++|.++...|++++|++.+ ...+...+ .........+.++...
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~--~~al~l~P----~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL--DEVPPTSR----HFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--HTSCTTST----THHHHHHHHHHHTC--
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH--HhhcccCc----ccHHHHHHHHHHHHcc
Confidence 99999999999 99999999999999999999999999999999997774 33333322 2333444455554443
Q ss_pred hHHHHH-HHHHHHHHHhHhhccccChh
Q 020914 163 HVFSFV-VETMETAVKSWHETSKVDAK 188 (320)
Q Consensus 163 ~~~~~a-~~~~~~a~~~~~~~~~~~~~ 188 (320)
+....+ .+.+++|+..+.......+.
T Consensus 582 ~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 582 RSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp -----CCHHHHHHHHHHHHTSCTTSTT
T ss_pred CCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 332333 56777777777666544443
No 76
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.80 E-value=6.9e-18 Score=130.00 Aligned_cols=128 Identities=30% Similarity=0.490 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
..+..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVE 132 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~~~~ 132 (320)
+..+|++++|+..|+++++++|++..++..++.+ +...|++++|+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999988665554 66778888887664
No 77
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=8e-19 Score=130.02 Aligned_cols=122 Identities=37% Similarity=0.609 Sum_probs=117.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
..|..+.+++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++++|+++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK 123 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 123 (320)
|.++..+|++++|+..|+++++++|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999886554
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=5e-19 Score=143.13 Aligned_cols=199 Identities=11% Similarity=0.003 Sum_probs=158.9
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.+|.++.++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|++.|+++++.+|++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhc
Q 020914 116 KRVSQLA-KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLD 194 (320)
Q Consensus 116 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg 194 (320)
|.++... |++++|+..... .+. .+ ..+....+...+ ..++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~--~~~-~~-~~~~~~~~~~~l-------------------------------~~~~~~~~ 127 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDK--ALA-DP-TYPTPYIANLNK-------------------------------GICSAKQG 127 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHH--HHT-ST-TCSCHHHHHHHH-------------------------------HHHHHHTT
T ss_pred HHHHHHhcCcHHHHHHHHHH--HHc-Cc-CCcchHHHHHHH-------------------------------HHHHHHcC
Confidence 9999999 999999766431 111 00 000000000000 12666788
Q ss_pred ChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhchhCCCCCC-ChhHhhhcccccccccCcccchh
Q 020914 195 KEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACLVAPKSII-SYPQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 195 ~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 270 (320)
++++|+..++++++..|.....+. +|.++...+++ |+..|++++.. .| ..+.+|...+.++...|+.+.+.
T Consensus 128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-----VEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 888888889888888887644444 88889999999 99999999988 45 55788888888888888887765
Q ss_pred hhcc
Q 020914 271 VQFE 274 (320)
Q Consensus 271 ~~~~ 274 (320)
.-+.
T Consensus 203 ~~~~ 206 (225)
T 2vq2_A 203 EYEA 206 (225)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 79
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.80 E-value=2.3e-18 Score=126.91 Aligned_cols=122 Identities=30% Similarity=0.498 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++.++|+++.+++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
.++..+|++++|+..|+++++++|++..++..++.++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999877665
No 80
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.80 E-value=1.7e-18 Score=129.30 Aligned_cols=121 Identities=27% Similarity=0.432 Sum_probs=112.6
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..++.+|.+++..|++++|+..|++++..+|.++.+++++|.++..+|++++|+..++++++++|+++.+++.+|
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQ-----SAEVSRKIKRVSQLAK 123 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 123 (320)
.++..+|++++|+..|+++++++|+ +..++..+..+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 6777777776655443
No 81
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=9.9e-20 Score=138.57 Aligned_cols=111 Identities=11% Similarity=-0.013 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 101 (320)
++-.+-..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34444466788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 102 LQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 102 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++++|+++.+|..+|.++...|++++|+..+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~ 127 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999998774
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=2.8e-18 Score=141.65 Aligned_cols=130 Identities=14% Similarity=0.135 Sum_probs=124.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--LNPQWEKGYFR 80 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~ 80 (320)
.|..+.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++. .+|.++.++..
T Consensus 67 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 146 (252)
T 2ho1_A 67 DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN 146 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHH
Confidence 4667889999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|....
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997664
No 83
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.80 E-value=4.2e-18 Score=135.83 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----------------TLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
+..+..+..+|..++..|+|++|+..|.+++.+.|.++ .++.++|.++..+|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45788999999999999999999999999999999887 89999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++..++.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888774
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.80 E-value=4.9e-19 Score=150.17 Aligned_cols=212 Identities=11% Similarity=-0.004 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------H
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------E 75 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~ 75 (320)
..+...|.++...|++++|+.+|.+++++.+. .+.++.++|.+|..+|++++|+.+|++++++.|.. .
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35666678888899999999999999987432 26789999999999999999999999999987753 5
Q ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHH
Q 020914 76 KGYFRKGCILEAM-EQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFK 148 (320)
Q Consensus 76 ~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 148 (320)
.++.++|.+|... |++++|+.+|++++++.|.+ ..++..+|.++...|++++|+..+. ..+...+.....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~~- 194 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS--KLIKSSMGNRLS- 194 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHTTSSCTTT-
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHhcCCcc-
Confidence 6888999999995 99999999999999988754 4567888888888888888866532 111111100000
Q ss_pred HHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc------hhhH
Q 020914 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT------HGSC 222 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~------~g~~ 222 (320)
.......+...| .++..+|++.+|+..|+++++++|....... ++..
T Consensus 195 ---~~~~~~~~~~lg------------------------~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~ 247 (292)
T 1qqe_A 195 ---QWSLKDYFLKKG------------------------LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247 (292)
T ss_dssp ---GGGHHHHHHHHH------------------------HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH
T ss_pred ---cHHHHHHHHHHH------------------------HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 000000000001 1566778888888888888888776543221 1222
Q ss_pred HH--HhhHH--HHHHHHHHhchhCCCCCCChhHhhh
Q 020914 223 FQ--FLRQY--ADDSFSSAACLVAPKSIISYPQVWR 254 (320)
Q Consensus 223 ~~--~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~ 254 (320)
+. ..+++ |+..|++++.+ +|.+...+.
T Consensus 248 ~~~~~~~~~~~A~~~~~~~~~l-----~~~~~~~~~ 278 (292)
T 1qqe_A 248 VNEGDSEQLSEHCKEFDNFMRL-----DKWKITILN 278 (292)
T ss_dssp HHTTCTTTHHHHHHHHTTSSCC-----CHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHhccCCcc-----HHHHHHHHH
Confidence 22 22346 88888888877 666655555
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=6.9e-19 Score=159.27 Aligned_cols=129 Identities=12% Similarity=0.174 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCC
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL---------VKLNKALADAETTISLNPQ 73 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~ 73 (320)
.|.++.+|+.+|.++...|++++|+.+|+++++++|+ ..++.++|.++..+ |++++|+..|+++++++|+
T Consensus 133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 5778899999999999999999999999999999999 79999999999999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAM--------EQYDDALSAFQTALQYNP---QSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++.+|+.+|.+|..+ |++++|+..|+++++++| +++.++..+|.++...|++++|++.+
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 999999999999999999 99999999999999999999997764
No 86
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.79 E-value=1.4e-18 Score=127.30 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILE 86 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 86 (320)
...++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
.+|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999998754
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=1.1e-18 Score=153.31 Aligned_cols=231 Identities=14% Similarity=0.104 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------C
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDP------SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------W 74 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------~ 74 (320)
..++.+|..++..|++++|+..|++|+++.+ ..+.+++++|.+|..+|++++|+..+++++++.+. .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3678899999999999999999999998742 24689999999999999999999999999998543 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-HHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH-LDEF 147 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~ 147 (320)
+.++..+|.+|..+|++++|+++|++++++.+. ...++.++|.++...|++++|+.... ..+..... ..+.
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~--~al~~~~~~~~~~ 259 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ--KAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHhhCChh
Confidence 568899999999999999999999999997442 24578999999999999999987753 33332221 1122
Q ss_pred HHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh--------hHHhhhcC---hhHHHHhhhhhhccccCcCCc
Q 020914 148 KSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA--------KVYFLLDK---EKTDTEKYAPIVNVDKAFESP 216 (320)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~--------~~~~~lg~---~~~A~~~~~~a~~~~~~~~~~ 216 (320)
...+...+|.++...|.+..|...+++++....+.....- .++...|+ ..+|+..+++.-.........
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence 3566677788888888888888888888776544221111 14555566 667777666532211111222
Q ss_pred cchhhHHHHhhHH--HHHHHHHHhch
Q 020914 217 HTHGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 217 ~~~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
..+|.+|...|++ |+..|+++++.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2377788888888 88888888865
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=2.3e-18 Score=138.60 Aligned_cols=162 Identities=11% Similarity=0.087 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHh
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR----------------KGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~----------------lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
++..+...|..+...|++++|+..|+++++++|+++.+|+. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc
Q 020914 104 YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS 183 (320)
Q Consensus 104 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 183 (320)
++|+++.++..+|.++...|++++|+..+ ...+. +.+.....+..+|.++...+. ...+.+...+.+..
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~--~~al~----~~P~~~~a~~~lg~~~~~~~~-----~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMY--EKILQ----LEADNLAANIFLGNYYYLTAE-----QEKKKLETDYKKLS 151 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHH--HHHHH----HCTTCHHHHHHHHHHHHHHHH-----HHHHHHHHHHC---
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHH--HHHHH----cCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHh
Confidence 99999999999999999999999997764 22222 233344455555555543332 22333444454444
Q ss_pred ccChh---------HHhhhcChhHHHHhhhhhhccccC
Q 020914 184 KVDAK---------VYFLLDKEKTDTEKYAPIVNVDKA 212 (320)
Q Consensus 184 ~~~~~---------~~~~lg~~~~A~~~~~~a~~~~~~ 212 (320)
...|. ++..+|++++|+..|++++++.|+
T Consensus 152 ~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 152 SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 44432 444556677777777777777665
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.79 E-value=3.4e-18 Score=142.37 Aligned_cols=188 Identities=12% Similarity=0.025 Sum_probs=137.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC--
Q 020914 34 IKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-- 108 (320)
Q Consensus 34 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-- 108 (320)
..++|.++..++.+|..+...|++++|+..|+++++.+|++ +.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45688999999999999999999999999999999999999 9999999999999999999999999999998865
Q ss_pred -HHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhH
Q 020914 109 -AEVSRKIKRVSQL--------AKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSW 179 (320)
Q Consensus 109 -~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 179 (320)
+.++..+|.++.. .|++++|+..+ ++++..+
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~----------------------------------------~~~l~~~ 127 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAF----------------------------------------QLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHH----------------------------------------HHHHHHC
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHH----------------------------------------HHHHHHC
Confidence 5688889988877 66666664442 2222222
Q ss_pred hhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccc
Q 020914 180 HETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQG 257 (320)
Q Consensus 180 ~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~ 257 (320)
+.... +.............+... ...+|.++...|+| |+..|++++...|.. +..+.+|+.+|
T Consensus 128 p~~~~----~~~a~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~a~~~l~ 192 (261)
T 3qky_A 128 PNHEL----VDDATQKIRELRAKLARK---------QYEAARLYERRELYEAAAVTYEAVFDAYPDT--PWADDALVGAM 192 (261)
T ss_dssp TTCTT----HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--TTHHHHHHHHH
T ss_pred cCchh----HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHccCHHHHHHHHHHHHHHCCCC--chHHHHHHHHH
Confidence 21110 000000000000000000 23489999999999 999999999884432 23678999999
Q ss_pred cccccc----------Ccccchhhhcccc
Q 020914 258 LRKWRH----------SQQDGFFVQFESP 276 (320)
Q Consensus 258 ~~~~~l----------~~~~~~~~~~~~~ 276 (320)
.++..+ |+++++...+...
T Consensus 193 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 193 RAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 999987 8888887777653
No 90
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.78 E-value=3.4e-18 Score=153.99 Aligned_cols=129 Identities=25% Similarity=0.416 Sum_probs=119.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---------------PTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.|..+.++..+|..++..|+|++|+..|++|++++|.+ ..+|+++|.||..+|++++|+.+|+++
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 36788999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 68 ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 68 l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++...++++++...
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888543
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.78 E-value=6.9e-19 Score=129.95 Aligned_cols=101 Identities=11% Similarity=0.137 Sum_probs=95.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 32 QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 32 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
++..++|+.+.++.++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020914 112 SRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 112 ~~~l~~~~~~~~~~~~A~~~~ 132 (320)
|..+|.++...|++++|+..+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~ 104 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAY 104 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999997764
No 92
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.78 E-value=1.6e-17 Score=120.11 Aligned_cols=114 Identities=32% Similarity=0.574 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999888764
No 93
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.78 E-value=3.9e-18 Score=150.06 Aligned_cols=204 Identities=13% Similarity=0.074 Sum_probs=157.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-- 74 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-- 74 (320)
+..+.++..+|.++...|++++|+.++.+|+++.+. .+.++.++|.+|..+|++++|+..|++++++.|..
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 457889999999999999999999999999988443 35689999999999999999999999999986543
Q ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914 75 ----EKGYFRKGCILEAMEQYDDALSAFQTALQ-----YN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (320)
Q Consensus 75 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 144 (320)
..++.++|.+|..+|++++|+.+|+++++ .+ |....++..+|.++...|++++|+.... ..+......
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~~~~ 297 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS--KGMAYSQKA 297 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHc
Confidence 35899999999999999999999999999 46 7888999999999999999999987753 333332221
Q ss_pred H-HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---------hhHHhhhcChhHHHHhhhhhhccccCc
Q 020914 145 D-EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---------AKVYFLLDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---------~~~~~~lg~~~~A~~~~~~a~~~~~~~ 213 (320)
. +........++.++...|.. ..+++|+..+.+..... ..+|..+|++++|+..+++++++....
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 1 11111133456666555553 33455555554442111 118899999999999999999886654
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=3.3e-17 Score=138.62 Aligned_cols=240 Identities=13% Similarity=0.039 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
......-......|.+ ++|+.++.++|.++|++..+|+.+|.++..+| ++++++.+++++|.++|++..+|+.++.+
T Consensus 33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~i 112 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence 3444445555666666 68999999999999999999999999999999 99999999999999999999999999999
Q ss_pred H----HHc---cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHhHHHHHHHHhhhh
Q 020914 85 L----EAM---EQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKK--RAQEVENIRSNVDMVQHLDEFKSEMSEKY 155 (320)
Q Consensus 85 ~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
+ ..+ ++++++++.+.++++.+|.+..+|...+.+....+.++ ++++... ..+...+. ........
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~--~~i~~d~~----N~sAW~~R 186 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVD--KVIDTDLK----NNSAWSHR 186 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHH--HHHHHCTT----CHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHH--HHHHhCCC----CHHHHHHH
Confidence 9 777 78999999999999999999999999999998888776 6654432 22211111 11111111
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhHhhccccChh----------HHhhhcChhH-HHHhhhhhhccc---cCcCCcc-chh
Q 020914 156 GAEECWKHVFSFVVETMETAVKSWHETSKVDAK----------VYFLLDKEKT-DTEKYAPIVNVD---KAFESPH-THG 220 (320)
Q Consensus 156 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~----------~~~~lg~~~~-A~~~~~~a~~~~---~~~~~~~-~~g 220 (320)
+.+....+.. .....++++++.+.+++.++|. ++...|+... ..+..+++++++ +...... .++
T Consensus 187 ~~ll~~l~~~-~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la 265 (306)
T 3dra_A 187 FFLLFSKKHL-ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLA 265 (306)
T ss_dssp HHHHHSSGGG-CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHH
T ss_pred HHHHHhcccc-chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHH
Confidence 1111111100 0012255555556666656655 4445555444 444556666655 3222222 256
Q ss_pred hHHHHhhHH--HHHHHHHHhc-hhCCCCCCChhHhhhccccc
Q 020914 221 SCFQFLRQY--ADDSFSSAAC-LVAPKSIISYPQVWRGQGLR 259 (320)
Q Consensus 221 ~~~~~~~~~--A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~ 259 (320)
.++...++. |++.|+++++ . +|.-...|..++..
T Consensus 266 ~~~~~~~~~~~A~~~~~~l~~~~-----Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 266 KIYTQQKKYNESRTVYDLLKSKY-----NPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHT
T ss_pred HHHHccCCHHHHHHHHHHHHhcc-----ChHHHHHHHHHHhh
Confidence 666666666 8888888775 4 55546667766653
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.77 E-value=1.1e-18 Score=136.62 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=114.8
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
++|...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+| ++..+..+
T Consensus 1 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~ 79 (176)
T 2r5s_A 1 SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI 79 (176)
T ss_dssp -----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH
Confidence 46777788999999999999999999999999999999999999999999999999999999999999999 88877777
Q ss_pred HHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 82 GCILE-AMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 82 g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+.+.. ..++..+|+..|+++++++|+++.++..+|.++...|++++|+..+
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 75543 3345567899999999999999999999999999999999997764
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.76 E-value=7.1e-18 Score=142.98 Aligned_cols=220 Identities=12% Similarity=0.054 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------WEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
++++|+.+|.++ |.+|..+|++++|+.+|++++.+.+. .+.+|.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488999998887 67889999999999999999998542 2678999999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHH
Q 020914 96 SAFQTALQYNPQS------AEVSRKIKRVSQLA-KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFV 168 (320)
Q Consensus 96 ~~~~~al~~~p~~------~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 168 (320)
.+|++++++.|.. ..++..+|.++... |++++|+..+ ...+...+.. +...
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~--~~Al~~~~~~-----------~~~~--------- 155 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY--ELAGEWYAQD-----------QSVA--------- 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH--HHHHHHHHHT-----------TCHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH--HHHHHHHHhC-----------CChH---------
Confidence 9999999997754 45788888888885 8888886654 2222221110 0000
Q ss_pred HHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCc--------cchhhHHHHhhHH--HHHHHHHHh
Q 020914 169 VETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESP--------HTHGSCFQFLRQY--ADDSFSSAA 238 (320)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~--------~~~g~~~~~~~~~--A~~~~~~al 238 (320)
.+...+.. ...++..+|++++|+..|++++++.|..... ...|.++..++++ |+..|++++
T Consensus 156 -----~~~~~~~~----lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 156 -----LSNKCFIK----CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp -----HHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred -----HHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000000 0137778899999999999999988776432 2268888889999 999999999
Q ss_pred chhCCCCCCChhHhhhccccccc--ccCcccchhhhcccccccccccccc
Q 020914 239 CLVAPKSIISYPQVWRGQGLRKW--RHSQQDGFFVQFESPLLRKLWFIPS 286 (320)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
.+.|..........+.+++..+. ..+++++++..+.......+|....
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 99554443332334555555443 5678888999998877777775433
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.76 E-value=1.1e-17 Score=139.84 Aligned_cols=130 Identities=14% Similarity=0.148 Sum_probs=120.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 70 (320)
.|..+.++..+|.++...|++++|+.+|++++++ +|..+.++..+|.+|..+|++++|+..|++++.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999987 3666789999999999999999999999999998
Q ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 71 ----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 71 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+|....++..+|.++..+|++++|+..|++++++ .|....++..+|.++...|++++|+...
T Consensus 119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (283)
T 3edt_B 119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192 (283)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5777889999999999999999999999999999 7777889999999999999999998775
No 98
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.76 E-value=5.7e-17 Score=118.26 Aligned_cols=117 Identities=23% Similarity=0.453 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
.+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
...|++++|+..|+++++++|++..++..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887543
No 99
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=6.7e-17 Score=135.31 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=158.1
Q ss_pred hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCH
Q 020914 4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE 75 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~ 75 (320)
|.++.+++.+|.++.. .+++++|+..|+++++.+ ++.+++.+|.+|.. .+++++|+..|+++++.+ ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 5567899999999999 999999999999999986 79999999999999 999999999999999984 89
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHhHHHH
Q 020914 76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVENIRSNVDMVQHLDEF 147 (320)
Q Consensus 76 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 147 (320)
.+++.+|.+|.. .+++++|+..|+++++.+ ++.++..+|.++.. .+++++|+..+.. .++. .
T Consensus 111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~--a~~~------~ 180 (273)
T 1ouv_A 111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDK--ACDL------K 180 (273)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH--HHHT------T
T ss_pred cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH--HHHC------C
Confidence 999999999999 999999999999999976 78899999999988 8899999877532 2221 1
Q ss_pred HHHHhhhhcchhhh----hhHHHHHHHHHHHHHHhHhhcc-ccChhHHhh----hcChhHHHHhhhhhhccccCc
Q 020914 148 KSEMSEKYGAEECW----KHVFSFVVETMETAVKSWHETS-KVDAKVYFL----LDKEKTDTEKYAPIVNVDKAF 213 (320)
Q Consensus 148 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~----lg~~~~A~~~~~~a~~~~~~~ 213 (320)
.+.....+|.++.. .+.+..|...++++++.-+... .....+|.. .+++++|+.+|+++++++|..
T Consensus 181 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 181 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 23344556666666 6667777777776665421000 000016777 899999999999999998753
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.75 E-value=1.2e-17 Score=141.26 Aligned_cols=129 Identities=16% Similarity=0.082 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.+...++.++|+..|++++..+|+++.++..+|.++...|++++|+..+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 8999999999999999999999999999999999999999999997764
No 101
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.75 E-value=3.3e-17 Score=120.69 Aligned_cols=120 Identities=25% Similarity=0.381 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EK 76 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~ 76 (320)
|..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.+.|++ +.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999877 89
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 77 GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 77 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
+++.+|.++..+|++++|+..|++++++.| ++..+..++.+....++
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 68888888887765544
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.75 E-value=2.4e-18 Score=143.85 Aligned_cols=162 Identities=12% Similarity=0.098 Sum_probs=131.5
Q ss_pred HHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHH
Q 020914 18 FKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--------NPQWEKGYFRK 81 (320)
Q Consensus 18 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l 81 (320)
...|++++|+.+|++|+++ +|..+.++..+|.+|...|++++|+..+++++++ +|....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888889999888874 3666889999999999999999999999999988 46678899999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH----HHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL----DEFKS 149 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ 149 (320)
|.++..+|++++|+..|++++.+ +|....++..+|.++...|++++|+.... ..+...... .+...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR--RALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH--HHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999998 56778899999999999999999987753 333322111 34455
Q ss_pred HHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh
Q 020914 150 EMSEKYGAEECWKHVFSFVVETMETAVKSWHE 181 (320)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 181 (320)
.+...+|.++...|.+..|...+++++...+.
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888888887776554
No 103
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-17 Score=123.60 Aligned_cols=117 Identities=30% Similarity=0.449 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN---PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
.|.++..++.+|..++..|++++|+..|+++++.+|++ ..++.++|.+|..+|++++|+..++++++++|+++.+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 36678999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.+|.++..+|++++|+..|+++++++|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877664
No 104
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=6.4e-17 Score=126.44 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..+..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 117 (186)
T 3as5_A 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117 (186)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|....
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997664
No 105
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.75 E-value=4.3e-17 Score=120.29 Aligned_cols=113 Identities=15% Similarity=0.164 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP---TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRK 81 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l 81 (320)
.+++.+|..++..|++++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..|+++++.+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678999999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
|.++..+|++++|+..|+++++..|+++.+......+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999888766655543
No 106
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.74 E-value=4.8e-17 Score=142.26 Aligned_cols=125 Identities=23% Similarity=0.387 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK----------------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
..+..+..+|..++..|+|++|+..|+++++ .+|.++.++.++|.+|..+|++++|+.++++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4567899999999999999999999999998 788889999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++.+++.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888874
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.74 E-value=8.1e-17 Score=118.96 Aligned_cols=125 Identities=23% Similarity=0.394 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 88 MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 88 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.|++++|+..|+++++..|.+..++..++.++...|++++|....
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 999999999999999999999999999999999999999987664
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=2.7e-17 Score=143.94 Aligned_cols=269 Identities=10% Similarity=-0.018 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLHLVKLNKALADAETTISLNPQW------ 74 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------ 74 (320)
.+..+..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 456788899999999999999999999999887653 368899999999999999999999999986643
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHH-
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYN--------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLD- 145 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 145 (320)
..++..+|.++...|++++|+..|++++++. |....++..+|.++...|++++|..... ..+.......
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~ 170 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR--SGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHhhccCc
Confidence 2447889999999999999999999999985 3345678889999999999999987753 2222222110
Q ss_pred HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccc---cCh-------hHHhhhcChhHHHHhhhhhhccccCcCC
Q 020914 146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSK---VDA-------KVYFLLDKEKTDTEKYAPIVNVDKAFES 215 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~---~~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~ 215 (320)
......+..++.++...|.+..+...+++++........ ... .++...|++++|...+++++...+....
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 012345556777888888888899888888876544211 000 1366889999999999999987654211
Q ss_pred c-----cchhhHHHHhhHH--HHHHHHHHhchhCCCCCCCh-hHhhhcccccccccCcccchhhhcccc
Q 020914 216 P-----HTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISY-PQVWRGQGLRKWRHSQQDGFFVQFESP 276 (320)
Q Consensus 216 ~-----~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 276 (320)
. ..++.++...|++ |+..+++++...+....+.. ..++..+|.++..+|+.+++...+...
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1 1266777788888 99999999977544332222 357888899999999999887766653
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.74 E-value=7.9e-17 Score=129.57 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+...+..++.+|..++..|++++|+..|++++ +| ++.+++++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus 2 s~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg 78 (213)
T 1hh8_A 2 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRG 78 (213)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 34567889999999999999999999999995 44 7899999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSA----------------EVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++..+|++++|+..|++++++.|++. .++..+|.++...|++++|+...
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 144 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQL 144 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999988877 89999999999999999997664
No 110
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.73 E-value=1.8e-17 Score=124.68 Aligned_cols=99 Identities=14% Similarity=0.258 Sum_probs=90.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 18 FKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL----------NKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 18 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
-+.+.|++|+..++++++++|+++.+|+++|.++..++++ ++|+..|++||+++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999876 599999999999999999999999999998
Q ss_pred cc-----------CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 88 ME-----------QYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 88 ~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
+| ++++|+++|++|++++|++...+..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 85 899999999999999999976655443
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=9.7e-18 Score=127.41 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 25 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
.+-..|++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 105 NPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 105 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+|+++.++..+|.++...|++++|+..+
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 112 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGL 112 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999997764
No 112
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=4.4e-16 Score=142.87 Aligned_cols=129 Identities=12% Similarity=-0.047 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
+|.+..+|..++.. ...|++++|...|+++++.+|.++.+|..+|..+...|++++|...|++++...| +...|...+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHH
Confidence 68899999999984 7899999999999999999999999999999999999999999999999999999 678998888
Q ss_pred H-HHHHccCHHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 020914 83 C-ILEAMEQYDDALS----AFQTALQY---NPQSAEVSRKIKRVSQL---------AKDKKRAQEVEN 133 (320)
Q Consensus 83 ~-~~~~~~~~~~A~~----~~~~al~~---~p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~ 133 (320)
. +....|++++|.+ .|++++.. +|.+..+|..++.+... .|++++|..++.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 5 4456788887765 88888864 56778899888887665 788888877654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.72 E-value=1.4e-16 Score=147.45 Aligned_cols=130 Identities=11% Similarity=0.071 Sum_probs=124.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++.++..+|.++...|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 98 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA---KDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~ 132 (320)
.++..+|++++|++.|+++++++|++..++..++.++... |++++|.+..
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999 9999997764
No 114
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.72 E-value=9e-18 Score=151.86 Aligned_cols=131 Identities=30% Similarity=0.480 Sum_probs=121.7
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.+..+.++..+|..++..|++++|+..|++|++++|+++.++.++|.+|..+|++++|+..++++++++|+++.+++++|
T Consensus 2 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 81 (477)
T 1wao_1 2 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 81 (477)
T ss_dssp CHHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV--SQLAKDKKRAQEVEN 133 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 133 (320)
.+|..+|++++|++.|+++++++|++..++..++.+ +...|++++|++...
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999988 777899999987754
No 115
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=135.95 Aligned_cols=208 Identities=13% Similarity=0.092 Sum_probs=147.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ--------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLN--- 71 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--- 71 (320)
.|..+.++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+..+++++++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 5778899999999999999999999999999987 35567899999999999999999999999999884
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914 72 -----PQWEKGYFRKGCILEAMEQYDDALSAFQTALQY--------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV 138 (320)
Q Consensus 72 -----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 138 (320)
|....++..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+.... ..+
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al 222 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK--EIL 222 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHH
Confidence 566788999999999999999999999999998 77778899999999999999999987753 222
Q ss_pred HHHHhHH-----------HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc---ccChhHHhhhcChhHHHHhhh
Q 020914 139 DMVQHLD-----------EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS---KVDAKVYFLLDKEKTDTEKYA 204 (320)
Q Consensus 139 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~---~~~~~~~~~lg~~~~A~~~~~ 204 (320)
....... ..........+......+.+..+...+..+....+... .....+|..+|++++|+..++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 223 TRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp HHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2221110 00111111112222212222222222232222111111 111238889999999999999
Q ss_pred hhhccccC
Q 020914 205 PIVNVDKA 212 (320)
Q Consensus 205 ~a~~~~~~ 212 (320)
+++++.|.
T Consensus 303 ~al~l~~~ 310 (311)
T 3nf1_A 303 AAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhc
Confidence 99988764
No 116
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.71 E-value=4e-17 Score=116.88 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR 80 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~ 80 (320)
.|.++..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..++++++++|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-cCHHHHHHHHHHHHhhCCCCH
Q 020914 81 KGCILEAM-EQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 81 lg~~~~~~-~~~~~A~~~~~~al~~~p~~~ 109 (320)
+|.++..+ |++++|++++++++...|.++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999999763
No 117
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=8.6e-16 Score=139.56 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 7 EMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 7 a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
+.+++.+|.++.. .+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+..|+++.+. +++.++
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~ 150 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 3455555555555 55555555555555543 245555555555555 45555555555555443 345555
Q ss_pred HHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Q 020914 79 FRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEV 131 (320)
Q Consensus 79 ~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~ 131 (320)
+.+|.+|.. .+++++|++.|+++++. .++.++..+|.++.. .+++++|+..
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 555555554 45555555555555553 345555555555554 4455555444
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.71 E-value=2e-16 Score=133.81 Aligned_cols=203 Identities=7% Similarity=-0.019 Sum_probs=154.3
Q ss_pred chHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhcCCC
Q 020914 3 AEAEEMSLKDKGNEFFKAG--NYLKAAALYTQAIKQDPSNPTLFSNRAAAF----LHL---VKLNKALADAETTISLNPQ 73 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~l~p~ 73 (320)
+|++..+|..+|.++...| ++++++.++.+++..+|++..+|+.++.++ ..+ +++++++.+++++++.+|+
T Consensus 63 nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 63 LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 6889999999999999999 999999999999999999999999999999 777 8999999999999999999
Q ss_pred CHHHHHHHHHHHHHccCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhhHHHHhHH
Q 020914 74 WEKGYFRKGCILEAMEQYD--DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD------KKRAQEVENIRSNVDMVQHLD 145 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~ 145 (320)
+..+|..++.++..+|+++ ++++.++++++.+|.+..+|...+.+....+. ++++++.. ...+...+
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~--~~aI~~~p--- 217 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV--KDKIVKCP--- 217 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH--HHHHHHCS---
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH--HHHHHhCC---
Confidence 9999999999999999999 99999999999999999999999998877765 66665443 22222211
Q ss_pred HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccC---h----------hHHhhhcChhHHHHhhhhhhc-ccc
Q 020914 146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVD---A----------KVYFLLDKEKTDTEKYAPIVN-VDK 211 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~----------~~~~~lg~~~~A~~~~~~a~~-~~~ 211 (320)
....+....+.+....|. ..+...+...+.+.+. + .++...|+.++|++.|+.+.+ ++|
T Consensus 218 -~n~SaW~y~~~ll~~~~~------~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 218 -QNPSTWNYLLGIHERFDR------SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp -SCHHHHHHHHHHHHHTTC------CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred -CCccHHHHHHHHHHhcCC------ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 111222222222222111 1111112222222222 1 277788999999999999996 788
Q ss_pred CcCCcc
Q 020914 212 AFESPH 217 (320)
Q Consensus 212 ~~~~~~ 217 (320)
.....|
T Consensus 291 ir~~yW 296 (306)
T 3dra_A 291 IRSNFW 296 (306)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 754444
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.71 E-value=1.2e-16 Score=147.88 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
.|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhh---hHHHHHHHHHHHHH
Q 020914 100 TALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWK---HVFSFVVETMETAV 176 (320)
Q Consensus 100 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~a~ 176 (320)
++++++|++..++..+|.++...|++++|++.+. ..+... +....+...++.++... |....+...+++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT--RAHQLL----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHC----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhC----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999977643 222222 22334555566666666 66777777777666
Q ss_pred HhHh
Q 020914 177 KSWH 180 (320)
Q Consensus 177 ~~~~ 180 (320)
+..+
T Consensus 156 ~~~p 159 (568)
T 2vsy_A 156 AQGV 159 (568)
T ss_dssp HHTC
T ss_pred hcCC
Confidence 5544
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.6e-16 Score=143.14 Aligned_cols=179 Identities=14% Similarity=0.105 Sum_probs=147.1
Q ss_pred HHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 020914 15 NEFFKAGNY-LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGC 83 (320)
Q Consensus 15 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~ 83 (320)
......|++ ++|+..+.+++.++|++..+|+.++.++..+|+ +++|+.+++++++.+|++..+|+.+|.
T Consensus 36 ~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w 115 (567)
T 1dce_A 36 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 115 (567)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 344456655 578999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhh
Q 020914 84 ILEAME--QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECW 161 (320)
Q Consensus 84 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (320)
++..++ ++++|++.+.++++++|.+..+|...+.+....|.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~------------------------------------- 158 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------------------------------------- 158 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC-------------------------------------
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-------------------------------------
Confidence 999999 77999999999999999999999988776533220
Q ss_pred hhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh--------------
Q 020914 162 KHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL-------------- 226 (320)
Q Consensus 162 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~-------------- 226 (320)
.+++++++++++++.+|.....|. +|.++..+
T Consensus 159 ---------------------------------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~ 205 (567)
T 1dce_A 159 ---------------------------------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205 (567)
T ss_dssp ---------------------------------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred ---------------------------------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence 223445555555555665555554 45444443
Q ss_pred hHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccc
Q 020914 227 RQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDG 268 (320)
Q Consensus 227 ~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 268 (320)
+.+ |++.+++|+.+ +|.+..+|+.++.++..++.+.+
T Consensus 206 ~~~~eel~~~~~ai~~-----~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 206 NVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHH-----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHhh-----CCCCccHHHHHHHHHhcCCCccc
Confidence 567 99999999999 88889999999999998888665
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.70 E-value=3.6e-16 Score=122.13 Aligned_cols=106 Identities=13% Similarity=0.186 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHhcCCCCHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAA-FLHLVKL--NKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
|.++..++.+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|+..++++++++|+++.+++.
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 120 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML 120 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence 33444555555555555555555555555555555555555555555 4445554 55555555555555555555555
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 81 KGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 81 lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+|.++..+|++++|+..|+++++++|++.
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 55555555555555555555555555443
No 122
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=4.5e-16 Score=141.41 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCH
Q 020914 4 EAEEMSLKDKGNEFFK----AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWE 75 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~ 75 (320)
+.++.+++.+|..+.. .+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+..|+++.+. +++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4578899999999999 99999999999999986 579999999999999 99999999999999875 589
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 020914 76 KGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVEN 133 (320)
Q Consensus 76 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 133 (320)
.+++.+|.+|.. .+++++|+..|+++.+. +++.++..+|.++.. .+++++|++.+.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 999999999999 89999999999999875 689999999999987 678888877653
No 123
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=1.9e-15 Score=128.64 Aligned_cols=121 Identities=6% Similarity=-0.028 Sum_probs=115.1
Q ss_pred cchHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHh
Q 020914 2 AAEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK--LNKALADAETTIS 69 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~ 69 (320)
-+|++..+|..++.++...|. +++++.++.+++..+|.+..+|+.++.++..+|+ +++++.+++++++
T Consensus 59 ~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~ 138 (331)
T 3dss_A 59 ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE 138 (331)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 478999999999999988776 7899999999999999999999999999999995 9999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 70 LNPQWEKGYFRKGCILEAMEQ-YDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 70 l~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
++|.|..+|..++.+....|. ++++++++.++++.+|.+..+|..++.+....
T Consensus 139 ~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 139 ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999 69999999999999999999999999988777
No 124
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=3.8e-16 Score=127.07 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH------------------ccCHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT---LFSNRAAAFLH------------------LVKLNKALA 62 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~------------------~g~~~~A~~ 62 (320)
|....+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++.. .|++++|+.
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 344689999999999999999999999999999999864 89999999986 579999999
Q ss_pred HHHHHHhcCCCCHHHH-----------------HHHHHHHHHccCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHH
Q 020914 63 DAETTISLNPQWEKGY-----------------FRKGCILEAMEQYDDALSAFQTALQYNPQSA---EVSRKIKRVSQLA 122 (320)
Q Consensus 63 ~~~~al~l~p~~~~~~-----------------~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~ 122 (320)
.|+++++.+|+++.++ +.+|.+|...|++++|+..|+++++..|+++ .++..+|.++...
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 9999999999987554 6789999999999999999999999999986 6799999999999
Q ss_pred HHHHHHHHHH
Q 020914 123 KDKKRAQEVE 132 (320)
Q Consensus 123 ~~~~~A~~~~ 132 (320)
|++++|++..
T Consensus 198 g~~~~A~~~~ 207 (225)
T 2yhc_A 198 QMNAQAEKVA 207 (225)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 9999997664
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.69 E-value=9.3e-17 Score=121.00 Aligned_cols=105 Identities=9% Similarity=-0.008 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 28 ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 28 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
..|++++.++|++..+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 108 SAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++.++..+|.++...|++++|+..+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~ 109 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGF 109 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999997764
No 126
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.68 E-value=2.8e-17 Score=119.57 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=87.0
Q ss_pred HcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 020914 19 KAGNYLKAAALYTQAIKQ---DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDAL 95 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~ 95 (320)
..|++++|+..|++++++ +|+++.++.++|.+|..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHH
Q 020914 96 SAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 96 ~~~~~al~~~p~~~~~~~ 113 (320)
..|+++++..|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999987654
No 127
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.68 E-value=2.8e-16 Score=137.99 Aligned_cols=203 Identities=11% Similarity=0.020 Sum_probs=150.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS-------NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-- 73 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-- 73 (320)
.|..+.+++.+|.++...|++++|+.++++|+++.+. .+.++.++|.+|..+|++++|+..|++++++.+.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 3567889999999999999999999999999987443 2568999999999999999999999999997432
Q ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH
Q 020914 74 ----WEKGYFRKGCILEAMEQYDDALSAFQTALQ-----YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL 144 (320)
Q Consensus 74 ----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 144 (320)
...++.++|.+|..+|++++|+.+|+++++ .+|....++..+|.++...|++++|+.... ..+......
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~ 294 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE--EGLDHITAR 294 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHCCTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHc
Confidence 356899999999999999999999999999 788889999999999999999999987753 222221110
Q ss_pred H-HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc---------ChhHHhhhcChhHHHHhhhhhhcccc
Q 020914 145 D-EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV---------DAKVYFLLDKEKTDTEKYAPIVNVDK 211 (320)
Q Consensus 145 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---------~~~~~~~lg~~~~A~~~~~~a~~~~~ 211 (320)
. +........++..+...+.. ..+++|+..+.+.... ...+|...|++++|+..|++++++.+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDE----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 0 00001112223333333321 2344444444432211 11288999999999999999998654
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=4.5e-15 Score=125.68 Aligned_cols=173 Identities=10% Similarity=-0.011 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNPQW--- 74 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 74 (320)
|.....+...+..++..|+|++|+..+.++++..|... ..++.+|.++...|++++|+..+++++.+.+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 56677888999999999999999999999999888754 457789999999999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-
Q 020914 75 ---EKGYFRKGCILEAMEQYDDALSAFQTAL---QYNPQSA----EVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH- 143 (320)
Q Consensus 75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~- 143 (320)
..++..+|.+|..+|++++|+.+|++++ +..|++. .++.++|.++...|++++|+.... ..+.....
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~--kal~~~~~~ 229 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN--KAIEISCRI 229 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHH--HHHHHHHhc
Confidence 5689999999999999999999999999 5566643 689999999999999999987753 22222211
Q ss_pred -HHHHHHHHhhhhcchhhhhhHHHHH-HHHHHHHHHh
Q 020914 144 -LDEFKSEMSEKYGAEECWKHVFSFV-VETMETAVKS 178 (320)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~a~~~ 178 (320)
.......++..+|.++...|.++.| ...+++|+..
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 0011233444455555555555555 4444544443
No 129
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.68 E-value=5.8e-17 Score=140.18 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALADAET 66 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~ 66 (320)
+..+..++.+|..++..|+|++|+..|++++.+.|++. .+++++|.+|..+|++++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56788999999999999999999999999999999876 4999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-HHHHHH
Q 020914 67 TISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-KDKKRA 128 (320)
Q Consensus 67 al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A 128 (320)
+++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.... +..+++
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999885443 334444
No 130
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.67 E-value=3.3e-16 Score=122.41 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFL-HLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
.|+++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..+...+|+..++++++++|+++.+++.+
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l 114 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL 114 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 588899999999999999999999999999999999 8877776665533 33444568999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 82 GCILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 82 g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
|.++...|++++|+..|+++++++|+. ..++..++.++...|+.++|...+
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 999999999999999999999999986 669999999999999999886654
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.66 E-value=4.3e-16 Score=121.67 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=107.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCH--H
Q 020914 16 EFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI-LEAMEQY--D 92 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~-~~~~~~~--~ 92 (320)
.+...|++++|+..++++++.+|.++.++..+|.+|...|++++|+..|+++++++|+++.++..+|.+ +...|++ +
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 355788999999999999999999999999999999999999999999999999999999999999999 8899999 9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 93 DALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 93 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+|+..|+++++++|++..++..+|.++...|++++|+...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999999999999999999999999999999997764
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.66 E-value=1.2e-15 Score=130.41 Aligned_cols=196 Identities=11% Similarity=-0.004 Sum_probs=153.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV-KLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
+|+-..++.....+....+..++|+..+.++|.++|++..+|+.++.++..+| .+++++.+++++|..+|++..+|+.+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 34555666666666667777789999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHc-c-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchh
Q 020914 82 GCILEAM-E-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEE 159 (320)
Q Consensus 82 g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (320)
+.++..+ + +++++++.+.++++.+|.+..+|...+.+....+.++.+ .
T Consensus 130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~----------------------------~-- 179 (349)
T 3q7a_A 130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI----------------------------S-- 179 (349)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC----------------------------C--
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc----------------------------c--
Confidence 9999998 8 999999999999999999999999999887666544310 0
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhH-------H--
Q 020914 160 CWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQ-------Y-- 229 (320)
Q Consensus 160 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~-------~-- 229 (320)
... ..++++.++++++++|.+...|. +|.++..+++ +
T Consensus 180 ---------~~~------------------------~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 180 ---------EAQ------------------------WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp ---------HHH------------------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred ---------hhh------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 001 12344444555555555544444 4444444332 4
Q ss_pred HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcc
Q 020914 230 ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQ 266 (320)
Q Consensus 230 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 266 (320)
+++++++++.+ +|.+..+|..+..++.+.|..
T Consensus 227 ELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 227 ELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCC
Confidence 99999999988 888899998877777666654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.5e-15 Score=110.51 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 117 (320)
|..+..+..+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 020914 118 VSQLAKDKKRAQEVE 132 (320)
Q Consensus 118 ~~~~~~~~~~A~~~~ 132 (320)
++...|++++|+...
T Consensus 81 ~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 81 AQIAVKEYASALETL 95 (126)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHhCHHHHHHHH
Confidence 999999999997764
No 134
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=5.3e-15 Score=135.66 Aligned_cols=129 Identities=16% Similarity=0.051 Sum_probs=111.3
Q ss_pred chHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFK-------AGNYL-------KAAALYTQAIK-QDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.|.++..|+..|..+.. .|+++ +|+..|++|++ ++|+++.+|..+|.++...|++++|...|+++
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a 347 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL 347 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 47788999999999986 79987 99999999997 89999999999999999999999999999999
Q ss_pred HhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q 020914 68 ISLNPQWE-KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS-QLAKDKKRAQEV 131 (320)
Q Consensus 68 l~l~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~ 131 (320)
++++|+++ .+|..+|.++.+.|++++|++.|++|++..|.....+...+.+. ...|+.++|..+
T Consensus 348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 99999985 69999999999999999999999999999998777766554432 234555555443
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.64 E-value=1.2e-16 Score=138.18 Aligned_cols=144 Identities=9% Similarity=0.047 Sum_probs=121.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHH
Q 020914 19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGC 83 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~ 83 (320)
..+++++|+..|+++++.+|..+.++..+|.++..+|++++|+..|+++++++|++ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH 163 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
+|..+|++++|+.+|+++++++|++..++..+|.++...|++++|+..+ ...+... +....+...++.++...+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~--~~al~l~----P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF--QKVLQLY----PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHC----SSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHC----CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997764 2333322 223334445555555555
Q ss_pred HHHHH
Q 020914 164 VFSFV 168 (320)
Q Consensus 164 ~~~~a 168 (320)
....+
T Consensus 279 ~~~~a 283 (336)
T 1p5q_A 279 RQLAR 283 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.64 E-value=7.1e-16 Score=113.84 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH-------HH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE-------VS 112 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~ 112 (320)
.+.++.++|.+++..|+|++|+.+|++|++++|+++.+|.++|.+|..+|++++|++.|+++++++|++.. ++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999987743 56
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020914 113 RKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 113 ~~l~~~~~~~~~~~~A~~~ 131 (320)
..+|.++...|++++|++.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 6666666666666666554
No 137
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.64 E-value=2.7e-15 Score=131.19 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLN-------- 71 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------- 71 (320)
.+.++..+|.++...|++++|+..+++++.+.|.. ..++.++|.++..+|++++|+..+++++.+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 34578899999999999999999999999876543 2457899999999999999999999999875
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH--
Q 020914 72 PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL-- 144 (320)
Q Consensus 72 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 144 (320)
|....++..+|.++...|++++|+..+++++.+.|.. ..++..++.++...|++++|...... ........
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~--a~~~~~~~~~ 209 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR--LENLLGNGKY 209 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHHTTSCC
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--HHHHHhccCc
Confidence 3346688899999999999999999999999998753 46788999999999999999877532 22111110
Q ss_pred -HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcccc-------ChhHHhhhcChhHHHHhhhhhhccccCcC--
Q 020914 145 -DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKV-------DAKVYFLLDKEKTDTEKYAPIVNVDKAFE-- 214 (320)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------~~~~~~~lg~~~~A~~~~~~a~~~~~~~~-- 214 (320)
...........+..+...|....+...+++++......... ...++...|++++|...++.++.+.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 289 (373)
T 1hz4_A 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 289 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch
Confidence 00011111111222334444555555444443221110000 01177788999999999999988754421
Q ss_pred -----CccchhhHHHHhhHH--HHHHHHHHhchhC
Q 020914 215 -----SPHTHGSCFQFLRQY--ADDSFSSAACLVA 242 (320)
Q Consensus 215 -----~~~~~g~~~~~~~~~--A~~~~~~al~~~~ 242 (320)
.....|.++...|++ |...|++++.+.+
T Consensus 290 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 290 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 122257777788888 9999999998743
No 138
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.63 E-value=1.8e-14 Score=122.85 Aligned_cols=165 Identities=12% Similarity=0.087 Sum_probs=96.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 020914 46 NRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSR 113 (320)
Q Consensus 46 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 113 (320)
..|.+|..+|++++|+.+|.+++.+.+.. ..++.++|.+|..+|++++|+.+|++++++.+.. ..++.
T Consensus 41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 120 (307)
T 2ifu_A 41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33556666666666666666666664422 3456666666666666666666666666663321 34556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH--HHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccCh----
Q 020914 114 KIKRVSQLAKDKKRAQEVENIRSNVDMVQHL--DEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDA---- 187 (320)
Q Consensus 114 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---- 187 (320)
++|.++.. |++++|+..+ ...+...... ......++..+|.++...|.+..|+..+++++...++......
T Consensus 121 ~lg~~~~~-g~~~~A~~~~--~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLY--QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHH--HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 66666665 6666665553 2222222211 1122344555566666666666666666666665544321000
Q ss_pred -----hHHhhhcChhHHHHhhhhhhccccCcC
Q 020914 188 -----KVYFLLDKEKTDTEKYAPIVNVDKAFE 214 (320)
Q Consensus 188 -----~~~~~lg~~~~A~~~~~~a~~~~~~~~ 214 (320)
.++..+|++++|+..|++++ +.|...
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 16667789999999999999 888754
No 139
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.63 E-value=2.7e-14 Score=121.56 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=104.9
Q ss_pred HHHcCCHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 17 FFKAGNYL-KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK----------LNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 17 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
....|++. +|+..+.++|.++|++..+|+.++.++..++. +++++.+++.++..+|++..+|+.++.++
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34677776 89999999999999999999999999999887 78999999999999999999999999999
Q ss_pred HHccC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Q 020914 86 EAMEQ--YDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD-KKRAQEV 131 (320)
Q Consensus 86 ~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~ 131 (320)
..+++ +++++.++.++++++|.+..+|...+.+....|. ++++++.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 99995 8999999999999999999999999999888877 4666554
No 140
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.63 E-value=8.8e-15 Score=117.50 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---------- 75 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------- 75 (320)
++.+++.+|.++...|++++|+..|+++++++|.++.+++++|.+|..+|++++|+..|++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 5679999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 020914 76 ------KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 76 ------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 99999999999999999999999999999998743
No 141
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.63 E-value=2.9e-15 Score=127.81 Aligned_cols=171 Identities=15% Similarity=0.089 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------C
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ------W 74 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~ 74 (320)
...+...|.++...|++++|+.+|.+++++.+.. +.++.++|.+|..+|++++|+.+|++++++.+. .
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3455666899999999999999999999886533 578999999999999999999999999998543 2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH--HH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL--DE 146 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 146 (320)
..++.++|.+|.. |++++|+.+|++++++.|.. ..++.++|.++...|++++|+..+. ..+...+.. ..
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~ 192 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ--KEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHHcCChh
Confidence 5689999999999 99999999999999998754 5789999999999999999987753 333332221 11
Q ss_pred HHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh
Q 020914 147 FKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK 188 (320)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 188 (320)
..... +...+......+.+++|+..+.+++ +.|.
T Consensus 193 ~~~~~-------~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 193 TCYKK-------CIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 11222 3333444444555666666666666 6663
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=1.3e-15 Score=128.61 Aligned_cols=130 Identities=8% Similarity=-0.018 Sum_probs=123.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|+++.+++.+|.++...|++++|+..+++++..+|+....+...+..+...++.++|+..+++++.++|+++.+++.+|
T Consensus 147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la 226 (287)
T 3qou_A 147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA 226 (287)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence 58889999999999999999999999999999999988888888888899999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQS--AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++...|++++|+..|+++++.+|++ ..++..++.++...|+.++|...+
T Consensus 227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 99999999999999999999999999 899999999999999988886553
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=1.1e-14 Score=123.26 Aligned_cols=174 Identities=10% Similarity=0.012 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT------LFSNRAAAFLHLVKLNKALADAETTISLNPQW---- 74 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---- 74 (320)
.....+...+..++..|++++|+..++++++..+..+. .+..+|.++...|++++|+..|++++.+.+..
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 44556677789999999999999999999998877654 34468999999999999999999999975442
Q ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhH-
Q 020914 75 --EKGYFRKGCILEAMEQYDDALSAFQTALQYN-------PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHL- 144 (320)
Q Consensus 75 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 144 (320)
..++.++|.+|..+|++++|+.+|+++++.. +....++.++|.++...|++++|+.... ..+......
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~--~al~~~~~~~ 230 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN--KAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHcC
Confidence 3479999999999999999999999999632 2234588999999999999999987743 333322221
Q ss_pred -HHHHHHHhhhhcchhhhhh-HHHHHHHHHHHHHHhHh
Q 020914 145 -DEFKSEMSEKYGAEECWKH-VFSFVVETMETAVKSWH 180 (320)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~ 180 (320)
......++..+|.++...| .++.|...+++|+..+.
T Consensus 231 ~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp BCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1223445555666666666 34666666666665544
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.8e-15 Score=137.09 Aligned_cols=120 Identities=5% Similarity=-0.032 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhc
Q 020914 3 AEAEEMSLKDKGNEFFKAGN----------YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV--KLNKALADAETTISL 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~l 70 (320)
+|++..+|+.+|.++...|+ +++|+.+++++++.+|++..+|+.++.++..+| ++++|++++++++++
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 68899999999999999998 999999999999999999999999999999999 779999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 020914 71 NPQWEKGYFRKGCILEAME-QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA 122 (320)
Q Consensus 71 ~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 122 (320)
+|.+..+|..+|.++..+| .+++++++++++++.+|.+..+|...+.++...
T Consensus 139 d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999999999999999999 999999999999999999999999999887654
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=2.3e-14 Score=104.67 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
..++.+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 020914 122 AKDKKRAQEVE 132 (320)
Q Consensus 122 ~~~~~~A~~~~ 132 (320)
.|++++|+...
T Consensus 98 ~g~~~~A~~~~ 108 (121)
T 1hxi_A 98 EHNANAALASL 108 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 99999997664
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.60 E-value=1.1e-15 Score=126.57 Aligned_cols=215 Identities=11% Similarity=0.014 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNR-------AAAFLHLVKLNKALADAETTISLNPQWEKG 77 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 77 (320)
++...++..|.-+ ..+++.+|...|.++++++|..+.+|.++ +.++..+++..+++..+++++.+.|+...+
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 4567888889886 68999999999999999999999999999 999999999999999999999998875444
Q ss_pred ---------------------HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020914 78 ---------------------YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRS 136 (320)
Q Consensus 78 ---------------------~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 136 (320)
+..++.++...|+|++|.+.|+.++...|++. +.+.+|.++...+++++|+..+. .
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~--~ 160 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK--S 160 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT--T
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH--H
Confidence 44588999999999999999999999999988 99999999999999999977643 1
Q ss_pred hhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhccc--cCc-
Q 020914 137 NVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVD--KAF- 213 (320)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~--~~~- 213 (320)
........ ....+...+|. ++..+|++++|+..|++++.-. |..
T Consensus 161 a~~~~d~~--~~~~a~~~LG~-------------------------------al~~LG~~~eAl~~l~~a~~g~~~P~~~ 207 (282)
T 4f3v_A 161 AGKWPDKF--LAGAAGVAHGV-------------------------------AAANLALFTEAERRLTEANDSPAGEACA 207 (282)
T ss_dssp GGGCSCHH--HHHHHHHHHHH-------------------------------HHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred hhccCCcc--cHHHHHHHHHH-------------------------------HHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence 11100000 00111111122 5567788888888888777533 331
Q ss_pred -CCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhcccccccc
Q 020914 214 -ESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWR 262 (320)
Q Consensus 214 -~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 262 (320)
......|.++..+|+. |...|++++.. +|. +.++..+..--+.
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~-----~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTT-----HPE-PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----SCC-HHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc-HHHHHHHhCCCCC
Confidence 1223488899999998 99999999988 777 7777766654333
No 147
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=8.8e-16 Score=109.94 Aligned_cols=95 Identities=24% Similarity=0.334 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYF 79 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~ 79 (320)
++.+++.+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~ 100 (320)
.+|.++..+|++++|+..|++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888776654
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=1.2e-14 Score=122.41 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 020914 38 PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKR 117 (320)
Q Consensus 38 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 117 (320)
|.++..+..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----HHhh
Q 020914 118 VSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----VYFL 192 (320)
Q Consensus 118 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~ 192 (320)
++...|++++|+..+. ..+...+. . ...++............ ...... -.....-.+. ....
T Consensus 81 ~~~~~g~~~~A~~~~~--~al~l~p~----~---~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~i~~~l~~l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQ--RAYSLAKE----Q---RLNFGDDIPSALRIAKK-KRWNSI---EERRIHQESELHSYLTRLI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHH--HHHHHHHH----T---TCCCCSHHHHHHHHHHH-HHHHHH---HHTCCCCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH--HHHHhCcc----c---hhhHHHHHHHHHHHHHH-HHHHHH---HHHHHhhhHHHHHHHHHHH
Confidence 9999999999987643 22222221 1 00111110000000000 111110 1111111121 2334
Q ss_pred hcChhHHHHhhhhhhccccCcCCccc-hhhHHHHh-hHH--HHHHHHHHhchhCCCC
Q 020914 193 LDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFL-RQY--ADDSFSSAACLVAPKS 245 (320)
Q Consensus 193 lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~-~~~--A~~~~~~al~~~~~~~ 245 (320)
.|++++|++.++++++++|....... ++..+... +.+ |.+.|+++.+..+...
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~ 204 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCC
Confidence 78999999999999999986532222 34444444 445 8888988886544333
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.59 E-value=1.4e-14 Score=109.18 Aligned_cols=92 Identities=15% Similarity=0.074 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHhh----
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-------WEK-----GYFRKGCILEAMEQYDDALSAFQTALQY---- 104 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~---- 104 (320)
+..+.++|..+..+|+|++|+..|++||+++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 577899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHH
Q 020914 105 ---NPQSAEVS----RKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 105 ---~p~~~~~~----~~l~~~~~~~~~~~~A~~~~ 132 (320)
+|++..+| +++|.++..+|++++|+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 99999999 99999999999999997664
No 150
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.59 E-value=3.3e-14 Score=104.70 Aligned_cols=106 Identities=23% Similarity=0.459 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|
T Consensus 31 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 110 (136)
T 2fo7_A 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110 (136)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCC
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~ 108 (320)
.++...|++++|+..|++++..+|++
T Consensus 111 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 111 NAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999864
No 151
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.58 E-value=4.7e-14 Score=101.85 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 25 KAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 25 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
+|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHH
Q 020914 105 NPQ--SAEVSRKIKRVSQLAK 123 (320)
Q Consensus 105 ~p~--~~~~~~~l~~~~~~~~ 123 (320)
+|. +......+......++
T Consensus 83 ~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhc
Confidence 884 4455555554444443
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.58 E-value=7e-14 Score=103.95 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=92.5
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
..+|.++..++.+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020914 115 IKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~ 132 (320)
+|.++...|++++|+...
T Consensus 83 l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANL 100 (137)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 999999999999997764
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.57 E-value=6.9e-14 Score=111.13 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=90.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHccC
Q 020914 17 FFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS------LNPQWEKGYFRKGCILEAMEQ 90 (320)
Q Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------l~p~~~~~~~~lg~~~~~~~~ 90 (320)
++..|++++|.+.++......+..+.++..+|.++...|++++|+..+++++. ..|....++..+|.++..+|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45688999999966555443335678899999999999999999999999998 444567789999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 91 YDDALSAFQTALQY---NPQS----AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 91 ~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+++|+..|++++++ .+++ ..++..+|.++...|++++|+...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988 4433 456888899999999999987764
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.57 E-value=3.1e-14 Score=109.67 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
++.++..++.+|.++...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 020914 117 RVSQLAKDKKRAQEVE 132 (320)
Q Consensus 117 ~~~~~~~~~~~A~~~~ 132 (320)
.++...|++++|+..+
T Consensus 87 ~~~~~~g~~~~A~~~~ 102 (164)
T 3sz7_A 87 LARFDMADYKGAKEAY 102 (164)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHH
Confidence 9999999999997764
No 155
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=2.1e-13 Score=132.58 Aligned_cols=233 Identities=9% Similarity=-0.011 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----------
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW----------- 74 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----------- 74 (320)
.+..|+.+|..+...|++++|+.+|.+| +++..|...|.++.++|+|++|+++|..|.+..++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 4667888888888888888888888775 677888888888888888888888888877665331
Q ss_pred ----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914 75 ----------------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV 138 (320)
Q Consensus 75 ----------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 138 (320)
...+..+|..++..|+|++|+..|.++ ..|..++.++..+|++++|++........
T Consensus 1179 Kl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1179 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred hhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 112334444444444444444444443 24444444444444444444332211111
Q ss_pred HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhcccc
Q 020914 139 DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDK 211 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~ 211 (320)
..+...+.+... .+.|..|..+.. .+..+|. .|...|.+++|+..++.++.+++
T Consensus 1251 -----------~aWkev~~acve-------~~Ef~LA~~cgl-~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1251 -----------RTWKEVCFACVD-------GKEFRLAQMCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred -----------HHHHHHHHHHhh-------hhHHHHHHHHHH-hhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 001111111111 222333333222 2333443 78889999999999999999997
Q ss_pred CcCCccc-hhhHHHHhh--HH--HHHHHHHHhchhCCCCCCChhHhhhcccccccccCcccchh
Q 020914 212 AFESPHT-HGSCFQFLR--QY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKWRHSQQDGFF 270 (320)
Q Consensus 212 ~~~~~~~-~g~~~~~~~--~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 270 (320)
.....+. +|.++...+ +. +++.|...+.+.+--..-..+..|......|.+-|+++.|.
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 7655554 676665433 33 89999988865111111144667888888888888888776
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.56 E-value=1.4e-13 Score=105.65 Aligned_cols=92 Identities=14% Similarity=0.076 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
+..+..+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 020914 121 LAKDKKRAQEVE 132 (320)
Q Consensus 121 ~~~~~~~A~~~~ 132 (320)
..|++++|+...
T Consensus 93 ~~~~~~~A~~~~ 104 (166)
T 1a17_A 93 ALGKFRAALRDY 104 (166)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 999999998764
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.54 E-value=5.6e-15 Score=117.61 Aligned_cols=123 Identities=9% Similarity=0.041 Sum_probs=101.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--------------
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE-------------- 75 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------------- 75 (320)
....+......|+++.|.+.+.......+..+..+..+|.++...|++++|+..|++++.+.|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 344566677788888888888877777777789999999999999999999999999999999887
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 76 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++.++|.++..+|++++|+.+|+++++++|++..++..+|.++...|++++|+..+
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 145 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999997764
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=2.2e-15 Score=135.54 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=106.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q 020914 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------------EKGYFRKGCI 84 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~ 84 (320)
.+++++|+..|+++++.+|..+.++.++|.++..+|+|++|+..|++|++++|++ ..+|+++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888899999999999999999999999999999999999998 6999999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
|..+|++++|+.+|+++++++|++..+++.+|.++...|++++|+..+
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~ 374 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999999999999999999999999999999997764
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.54 E-value=1.4e-13 Score=94.63 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHc
Q 020914 85 LEAM 88 (320)
Q Consensus 85 ~~~~ 88 (320)
+..+
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 160
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.53 E-value=2.1e-13 Score=132.57 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=138.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQ----------------------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
.|.++...|.+++|..+|+++-.. ..+.+.+|+.+|.++...|++++|+.+|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 378888888888888888776211 1344677777777777777777777777665
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHH
Q 020914 71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSE 150 (320)
Q Consensus 71 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 150 (320)
+++..|...|.++.++|++++|+++|..|.+..++. .+...+|.++...+++++...+. ... ...
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~fI---~~~---------n~a 1196 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEFI---NGP---------NNA 1196 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHH---hCC---------CHH
Confidence 667777777777777777777777777777766432 12223566665555555432221 000 111
Q ss_pred HhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChhHHhhhcChhHHHHhhhhhhcccc-------------------
Q 020914 151 MSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVNVDK------------------- 211 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~~~~------------------- 211 (320)
-+...|+.....|.++.|...|.+|-. |.+.. .++..+|++++|++.+.++.....
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~n-y~rLA----~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVSN-FGRLA----STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhhH-HHHHH----HHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 122345555555555555555554421 11111 277788888888888888765433
Q ss_pred -------CcCCccchhhHHHHhhHH--HHHHHHHHhchhCCCCCCChhHhhhccccccc--ccCcccchhhhcc
Q 020914 212 -------AFESPHTHGSCFQFLRQY--ADDSFSSAACLVAPKSIISYPQVWRGQGLRKW--RHSQQDGFFVQFE 274 (320)
Q Consensus 212 -------~~~~~~~~g~~~~~~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 274 (320)
........+.+|...|.| |+..+++++.+ ++.....|..+|..+. +-++..+....|.
T Consensus 1272 cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-----eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1272 CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 000111245566677777 99999999988 5556677766665543 3334444443333
No 161
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.53 E-value=5.9e-14 Score=113.04 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV----KLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
..++.+++.+|.++...+++++|+..|+++++. .++.+++++|.+|.. + ++++|+..|+++.+ ++++.+++
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~ 89 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEI 89 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 356889999999999999999999999999886 579999999999998 7 99999999999954 67999999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----HHHHHHHHHHH
Q 020914 80 RKGCILEA----MEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQL----AKDKKRAQEVE 132 (320)
Q Consensus 80 ~lg~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~A~~~~ 132 (320)
++|.+|.. .+++++|+..|+++++..| .++.++..+|.++.. .+++++|+..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99999998 8999999999999999988 459999999999987 66788886664
No 162
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=3.5e-15 Score=134.16 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
..+|..++..|++++|+..|+++.+. .++.+++.+|.+|...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56789999999999999999999876 4678899999999999999 8999999999976 78899999997776
Q ss_pred cc-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 88 ME-----QYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 88 ~~-----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
.+ ++++|+..|+++++. +++.++..+|.++...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPH 121 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCC
Confidence 65 889999999999984 445588888888776554
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.52 E-value=2.9e-14 Score=101.68 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=93.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHH
Q 020914 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--SAEVSR 113 (320)
Q Consensus 36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~ 113 (320)
++|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+++++++|. +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHH-HHHHHHHHHH
Q 020914 114 KIKRVSQLA-KDKKRAQEVE 132 (320)
Q Consensus 114 ~l~~~~~~~-~~~~~A~~~~ 132 (320)
.+|.++... |++++|++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~ 100 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAE 100 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 999999999 9999997764
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.52 E-value=8.7e-14 Score=105.87 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW--- 74 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--- 74 (320)
+..+..+..+|.++...|++++|+.++++++++.+.. ..++..+|.++..+|++++|+..+++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4567899999999999999999999999999886542 2589999999999999999999999999986543
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHHH
Q 020914 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
..++..+|.++..+|++++|+..+++++++.+.. ..++..+|.++...|++++|...
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 6789999999999999999999999999874322 45667777777777777777555
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.52 E-value=2.1e-13 Score=116.58 Aligned_cols=122 Identities=6% Similarity=-0.041 Sum_probs=116.6
Q ss_pred chHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAG-NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHL-V-KLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
+|++..+|..+|.++...| .+++++.++.+++..+|++..+|+.++.++..+ + ++++++++++++++++|++..+|.
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 6888999999999999999 599999999999999999999999999999998 8 999999999999999999999999
Q ss_pred HHHHHHHHccCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 020914 80 RKGCILEAMEQYD--------DALSAFQTALQYNPQSAEVSRKIKRVSQLAKD 124 (320)
Q Consensus 80 ~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 124 (320)
.++.++..+|+++ ++++.++++++.+|.+..+|...+.+....+.
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 9999999999998 99999999999999999999999998876654
No 166
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.52 E-value=8.6e-14 Score=102.55 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 37 DPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 37 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
.|..+.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 020914 117 RVSQLAKDKKRAQEVE 132 (320)
Q Consensus 117 ~~~~~~~~~~~A~~~~ 132 (320)
.++...|++++|+...
T Consensus 92 ~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 92 AALEAMKDYTKAMDVY 107 (133)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH
Confidence 9999999999997764
No 167
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.51 E-value=4.6e-13 Score=113.26 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCCCH--
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTI---SLNPQWE-- 75 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~-- 75 (320)
...++.+|..+...|++++|+.+|+++++..+.. ..++.++|.+|..+|++++|+.+|++++ +..|++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~ 194 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc
Confidence 3456778999999999999999999999876544 5789999999999999999999999999 4566643
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH-HHH
Q 020914 76 --KGYFRKGCILEAMEQYDDALSAFQTALQYNPQ------SAEVSRKIKRVSQLAKDKKRA-QEV 131 (320)
Q Consensus 76 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A-~~~ 131 (320)
.+++++|.+|..+|++++|+.+|++++++.++ ...++..+|.++...|++++| ...
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 69999999999999999999999999998643 267899999999999999999 554
No 168
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=1.2e-13 Score=124.04 Aligned_cols=227 Identities=11% Similarity=0.011 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC------------------------
Q 020914 6 EEMSLKDKGNEFFKAG-----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVK------------------------ 56 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------------------ 56 (320)
++.+++.+|.++...| ++++|+..|+++++.++ +.+++++|.+|...+.
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~ 145 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGL 145 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHH
Confidence 5667788888776665 78888888888887543 3355555555554433
Q ss_pred ---------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 57 ---------------LNKALADAETTISLNPQWEKGYFRKGCILEAME---QYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 57 ---------------~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
.++|...++.+...+|. +++.+|.+|...| ++++|+..|+++.+..|.....+..+|.+
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~ 222 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARV 222 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22333344444444443 8899999999999 99999999999999999999998999998
Q ss_pred HHHH----HHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcch-h--hhhhHHHHHHHHHHHHHHhHhhccccChh---
Q 020914 119 SQLA----KDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAE-E--CWKHVFSFVVETMETAVKSWHETSKVDAK--- 188 (320)
Q Consensus 119 ~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--- 188 (320)
+... +++++|+..+.... +..+.....+|.+ + ...++...+...+++|.+.- ++.
T Consensus 223 y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~ 287 (452)
T 3e4b_A 223 LGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAEL 287 (452)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHH
Confidence 8655 57788877653211 1223334444544 2 23455666666666655321 222
Q ss_pred ---HHhhhc-----ChhHHHHhhhhhhccccCcCCc-cchhhHHHH----hhHH--HHHHHHHHhchhCCCCCCChhHhh
Q 020914 189 ---VYFLLD-----KEKTDTEKYAPIVNVDKAFESP-HTHGSCFQF----LRQY--ADDSFSSAACLVAPKSIISYPQVW 253 (320)
Q Consensus 189 ---~~~~lg-----~~~~A~~~~~~a~~~~~~~~~~-~~~g~~~~~----~~~~--A~~~~~~al~~~~~~~~~~~~~~~ 253 (320)
..+..| ++++|+.+|+++. +..... ..+|.+|.. .+.+ |+.+|++|.+. .++.+.
T Consensus 288 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~~~A~ 357 (452)
T 3e4b_A 288 LLGKLYYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQNSAD 357 (452)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TCTTHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------ChHHHH
Confidence 222356 8999999999998 333223 337777665 2245 99999999853 346778
Q ss_pred hcccccccc
Q 020914 254 RGQGLRKWR 262 (320)
Q Consensus 254 ~~~~~~~~~ 262 (320)
+++|.++..
T Consensus 358 ~~Lg~~y~~ 366 (452)
T 3e4b_A 358 FAIAQLFSQ 366 (452)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 888887764
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.50 E-value=1.6e-13 Score=108.91 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCC--
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK------QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---NPQ-- 73 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~-- 73 (320)
..+..+..+|.++...|++++|+..+++++. ..|..+.++.++|.++..+|++++|+..+++++.+ .++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 5688999999999999999999999999998 44556789999999999999999999999999998 443
Q ss_pred --CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 --WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ--S----AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 74 --~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
...++..+|.++..+|++++|+..+++++++.+. + ..++..+|.++...|++++|....
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3567999999999999999999999999987432 2 234688999999999999997664
No 170
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.50 E-value=1.2e-13 Score=103.96 Aligned_cols=73 Identities=23% Similarity=0.274 Sum_probs=67.9
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 52 LHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQY----------DDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 52 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
.+.+.+++|+..++++++++|+++.+|+++|.++..++++ ++|+..|++||+++|++..+|+++|.++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999886 599999999999999999999999999987
Q ss_pred HHH
Q 020914 122 AKD 124 (320)
Q Consensus 122 ~~~ 124 (320)
.|.
T Consensus 93 lg~ 95 (158)
T 1zu2_A 93 FAF 95 (158)
T ss_dssp HHH
T ss_pred hcc
Confidence 764
No 171
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.48 E-value=3.4e-13 Score=92.56 Aligned_cols=84 Identities=19% Similarity=0.374 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 020914 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRV 118 (320)
Q Consensus 39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 118 (320)
.++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 020914 119 SQLA 122 (320)
Q Consensus 119 ~~~~ 122 (320)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 172
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.3e-13 Score=98.48 Aligned_cols=89 Identities=15% Similarity=0.211 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSR 113 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 113 (320)
++.++..+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 88888
Q ss_pred HHHHHHHHHHHHHHH
Q 020914 114 KIKRVSQLAKDKKRA 128 (320)
Q Consensus 114 ~l~~~~~~~~~~~~A 128 (320)
.+|.++...|+++.|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 889888888766655
No 173
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=2.2e-13 Score=99.76 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=92.3
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
+.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020914 115 IKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~ 132 (320)
+|.++...|++++|+...
T Consensus 86 ~~~~~~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYY 103 (131)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 999999999999997764
No 174
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.47 E-value=8.3e-14 Score=97.60 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=77.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPT-LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM 88 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 88 (320)
.+.+|..++..|++++|+..|+++++.+|+++. +++.+|.+|..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 357788888889999999999999888888888 88889999999999999999999999988888887754
Q ss_pred cCHHHHHHHHHHHHhhCCCCH
Q 020914 89 EQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 89 ~~~~~A~~~~~~al~~~p~~~ 109 (320)
+.+.+|+..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 677788888888888777653
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.47 E-value=3.1e-13 Score=103.82 Aligned_cols=92 Identities=8% Similarity=0.013 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISL------------------NPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
+..+..+|..++..|+|++|+..|++++.+ +|.+..+|.++|.+|..+|++++|+.++++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 678999999999999999999999999999 77778999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 103 QYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 103 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+++|+++.++..+|.++...|++++|+..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHH
Confidence 999999999999999999999999997764
No 176
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.47 E-value=8.2e-13 Score=95.83 Aligned_cols=97 Identities=22% Similarity=0.335 Sum_probs=89.5
Q ss_pred cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 36 QDPSN-PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 36 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.+|.. +.+++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020914 115 IKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 115 l~~~~~~~~~~~~A~~~~ 132 (320)
++.++...|++++|....
T Consensus 83 la~~~~~~~~~~~A~~~~ 100 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYY 100 (125)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 999999999999997764
No 177
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.47 E-value=3.1e-13 Score=114.26 Aligned_cols=124 Identities=10% Similarity=0.006 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CCCCH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSNRAAAFLHLVKLNKALADAETTISL-------NPQWE 75 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~p~~~ 75 (320)
.+..+|..+...|++++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+.+|+++++. .|...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 34458999999999999999999999865443 347999999999999999999999999953 22345
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH-HHHHHHHH
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------AEVSRKIKRVSQLAKD-KKRAQEVE 132 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~-~~~A~~~~ 132 (320)
.+++++|.+|..+|++++|+.++++++++.+.. ..++..+|.++...|+ +++|++..
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 689999999999999999999999999986544 7899999999999994 68997764
No 178
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.46 E-value=6e-13 Score=93.57 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=61.9
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 36 QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 36 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
.+|+++.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|++.|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 468888999999999999999999999999999999999999999999999999999999999999888664
No 179
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=1e-12 Score=94.32 Aligned_cols=93 Identities=12% Similarity=0.132 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
.+..++.+|.++...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++.+|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 020914 120 QLAKDKKRAQEVE 132 (320)
Q Consensus 120 ~~~~~~~~A~~~~ 132 (320)
...|++++|....
T Consensus 83 ~~~~~~~~A~~~~ 95 (118)
T 1elw_A 83 EFLNRFEEAKRTY 95 (118)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 9999999997764
No 180
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-12 Score=96.71 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=93.0
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 35 KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 35 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
..+|..+..++.+|.++...|++++|+..|+++++++|++ ..+++.+|.++..+|++++|+..|+++++++|++..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3467789999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020914 112 SRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 112 ~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+..+|.++...|++++|+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999997764
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.3e-12 Score=114.64 Aligned_cols=202 Identities=10% Similarity=-0.015 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----------------TLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
.+....|..+...|+|++|++.|.++++..|... .++.++|.+|...|++++|++.+.+++.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999988742 46899999999999999999999999998
Q ss_pred CCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020914 71 NPQWEK------GYFRKGCILEAMEQYDDALSAFQTALQYNP------QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNV 138 (320)
Q Consensus 71 ~p~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 138 (320)
.+.... +...+|.++...|++++|+..+++++...+ ....++..+|.++...|++.+|..........
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 765433 456688888899999999999999998743 23678899999999999999998775321111
Q ss_pred HHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------HHhhhcChhHHHHhhhhhh
Q 020914 139 DMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIV 207 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~lg~~~~A~~~~~~a~ 207 (320)
............++...+.++...|++..|...++++......... .+. ++...|++.+|...|..++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1111112334566777788888888888888888888776554321 111 5667789999999988887
Q ss_pred ccc
Q 020914 208 NVD 210 (320)
Q Consensus 208 ~~~ 210 (320)
+..
T Consensus 244 ~~~ 246 (434)
T 4b4t_Q 244 ESY 246 (434)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.42 E-value=1.2e-12 Score=96.05 Aligned_cols=91 Identities=18% Similarity=0.044 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWE---KGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKI 115 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 115 (320)
.+++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..|+++++.+|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578999999999999999999999999999998 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020914 116 KRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 116 ~~~~~~~~~~~~A~~~~ 132 (320)
|.++...|++++|+...
T Consensus 83 a~~~~~~g~~~~A~~~~ 99 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTL 99 (129)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 99999999999997764
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.42 E-value=1.3e-12 Score=94.62 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=76.3
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++..+|+++.......
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999987764433
Q ss_pred HH
Q 020914 83 CI 84 (320)
Q Consensus 83 ~~ 84 (320)
.+
T Consensus 103 ai 104 (117)
T 3k9i_A 103 AI 104 (117)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 184
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.41 E-value=6.3e-14 Score=122.69 Aligned_cols=227 Identities=10% Similarity=-0.044 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
++..|..+|..+...|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..|+ +.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHH
Confidence 3468888888888888888888888764 35668888888888888888888888888875443 67777788888
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVF 165 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (320)
.++|+++++.+.++. | +..+|..+|..+...|.+++|...+... .-+..++.++...|.+
T Consensus 105 ~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 105 AKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEY 164 (449)
T ss_dssp ----CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCH
T ss_pred HHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccH
Confidence 888888887777742 4 3358888888888888888887665321 1222334444444444
Q ss_pred HHHHHHHHHHHHhHhhccccCh-------hHHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHH
Q 020914 166 SFVVETMETAVKSWHETSKVDA-------KVYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSS 236 (320)
Q Consensus 166 ~~a~~~~~~a~~~~~~~~~~~~-------~~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~ 236 (320)
+. |++.+.++. ++ .++...|+++.|.......+ +.|+. ......+|...|++ |+..+++
T Consensus 165 q~-------AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~--l~~lv~~Yek~G~~eEai~lLe~ 232 (449)
T 1b89_A 165 QA-------AVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADE--LEELINYYQDRGYFEELITMLEA 232 (449)
T ss_dssp HH-------HHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHH--HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-------HHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhh--HHHHHHHHHHCCCHHHHHHHHHH
Confidence 44 444444443 33 27778889999977776533 45543 12255678888888 9999999
Q ss_pred HhchhCCCCCCChhHhhhccccccc--ccCcccchhhhccc
Q 020914 237 AACLVAPKSIISYPQVWRGQGLRKW--RHSQQDGFFVQFES 275 (320)
Q Consensus 237 al~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 275 (320)
++.+ ++....+|..+|..+. +.++..+.+..|.+
T Consensus 233 aL~l-----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 233 ALGL-----ERAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HTTS-----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HhCC-----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9988 5666888888887654 44455555555444
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=2.5e-13 Score=122.73 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|.++.++..+|.++...|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..+|
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~ 115 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHccCHHHHHHHHH-----------HHHhhCCCCHHH
Q 020914 83 CI--LEAMEQYDDALSAFQ-----------TALQYNPQSAEV 111 (320)
Q Consensus 83 ~~--~~~~~~~~~A~~~~~-----------~al~~~p~~~~~ 111 (320)
.+ +...|++++|++.++ +++.++|+...+
T Consensus 116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 99 889999999999999 888888876443
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.40 E-value=1.6e-12 Score=95.22 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-------HHH
Q 020914 39 SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-------AEV 111 (320)
Q Consensus 39 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 111 (320)
..+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++++.|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999999999887 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020914 112 SRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 112 ~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+..+|.++...|++++|....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~ 102 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFY 102 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHH
Confidence 999999999999999997764
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.40 E-value=3.5e-14 Score=124.30 Aligned_cols=228 Identities=10% Similarity=-0.007 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCI 84 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 84 (320)
.+...+...+..+...|+|++|+.+++.+++..+ ++.+...++.+|.++|++.++.++++. |+ ..+|..+|..
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd~ 131 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGDR 131 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHHH
Confidence 3556888899999999999999999999998644 378888999999999999998888742 53 4599999999
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhH
Q 020914 85 LEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHV 164 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (320)
++..|+|++|+.+|.++ ..|..++.++..+|++++|.+.......+ ..+...+.+....|
T Consensus 132 ~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~-----------~~Wk~v~~aCv~~~- 191 (449)
T 1b89_A 132 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST-----------RTWKEVCFACVDGK- 191 (449)
T ss_dssp -----CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH-----------HHHHHHHHHHHHTT-
T ss_pred HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcCCc-----------hhHHHHHHHHHHcC-
Confidence 99999999999999977 47888999999999999998775432111 11222223333333
Q ss_pred HHHHHHHHHHHHHhHhhccccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHH--hhHH--HHH
Q 020914 165 FSFVVETMETAVKSWHETSKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQF--LRQY--ADD 232 (320)
Q Consensus 165 ~~~a~~~~~~a~~~~~~~~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~--~~~~--A~~ 232 (320)
.++.|..+... +..+|. .|...|++++|+..+++++.+++.-...++ +|.+|.. .++. +++
T Consensus 192 ------ef~lA~~~~l~-L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~ 264 (449)
T 1b89_A 192 ------EFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 264 (449)
T ss_dssp ------CHHHHHHTTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------cHHHHHHHHHH-HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33444433333 445554 788999999999999999999976555555 6666654 3344 899
Q ss_pred HHHHHhchhCCCCCC-----ChhHhhhcccccccccCcccchhh
Q 020914 233 SFSSAACLVAPKSII-----SYPQVWRGQGLRKWRHSQQDGFFV 271 (320)
Q Consensus 233 ~~~~al~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~ 271 (320)
.|...+.+ .+ ..+..|..+...+..-++++.|..
T Consensus 265 ~~~~~ini-----~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 265 LFWSRVNI-----PKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHSTTSCH-----HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcC-----cHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 99888876 33 335668888888888888887654
No 188
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.40 E-value=1.5e-12 Score=104.73 Aligned_cols=125 Identities=13% Similarity=0.052 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC--C
Q 020914 4 EAEEMSLKDKGNEFFKAG----NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNP--Q 73 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p--~ 73 (320)
+.++.+++.+|.++.. + ++++|+.+|+++++ +.++.+++++|.+|.. .+++++|+..|+++++..| +
T Consensus 47 ~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~ 123 (212)
T 3rjv_A 47 QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA 123 (212)
T ss_dssp TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence 3467899999999998 7 99999999999975 5689999999999998 8999999999999999998 4
Q ss_pred CHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH-H-----HHHHHHHHH
Q 020914 74 WEKGYFRKGCILEA----MEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLA-K-----DKKRAQEVE 132 (320)
Q Consensus 74 ~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~-----~~~~A~~~~ 132 (320)
++.+++.+|.+|.. .+++++|+..|+++++. |.++.++..+|.++... | ++++|+..+
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 69999999999999 89999999999999999 77888999999998754 2 678887664
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.39 E-value=1.6e-12 Score=91.29 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=75.6
Q ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYF 79 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~ 79 (320)
.+|.++.+++.+|.+++..|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|+ +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999999774 445555
Q ss_pred HHHHHHHHccC
Q 020914 80 RKGCILEAMEQ 90 (320)
Q Consensus 80 ~lg~~~~~~~~ 90 (320)
.+..++...+.
T Consensus 82 ~l~~~l~~~~~ 92 (100)
T 3ma5_A 82 ELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHccc
Confidence 55555544443
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=6.7e-12 Score=95.25 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS------ 108 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------ 108 (320)
+.++..+|.++...|++++|+..+++++++.|.. ..++..+|.++..+|++++|+..|++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 5789999999999999999999999999986643 2589999999999999999999999999986553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh--HHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhH
Q 020914 109 AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQH--LDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSW 179 (320)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 179 (320)
..++..+|.++...|++++|+.... ..+..... .......+...++.++...|.+..+...++++++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~--~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHL--KHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5678899999999999999987643 22222211 122333444445555555555555555555555443
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.36 E-value=6.3e-12 Score=113.20 Aligned_cols=126 Identities=11% Similarity=0.056 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCC
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQW 74 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~ 74 (320)
......+..+..+|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+..++++|.+ .|++
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34556667788999999999999999975 3444 578999999999999999999999999986 3444
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 75 ---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSA---EVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 75 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
...+.++|.+|..+|++++|+..|++|+++ .|+++ .....++.++..++.+++|+.++.
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999986 56665 456788888889999999987753
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=1.5e-12 Score=112.37 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-H
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL-E 86 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~ 86 (320)
.+++++|.++...|+|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+. .
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHH
Q 020914 87 AMEQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~~~p~~~~ 110 (320)
..+..+++...|.+++...|+++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 567788899999999999998764
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=2.3e-11 Score=106.18 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKG 82 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 82 (320)
.|..+..+.++|.+++..|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~ 348 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCHHHHHHH
Q 020914 83 CILEAMEQYDDALSA 97 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~ 97 (320)
.++..+++++++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 194
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.30 E-value=3.1e-11 Score=99.99 Aligned_cols=125 Identities=8% Similarity=0.011 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-C-HHHHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ-W-EKGYFRKGCI 84 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~-~~~~~~lg~~ 84 (320)
.+.....+..+...|+|++|.+.|..++..+|.+. +.+.+|.++...++|++|+..|+.++...+. . ..+++.+|.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence 45567778999999999999999999999999888 9999999999999999999999988876422 2 4589999999
Q ss_pred HHHccCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 85 LEAMEQYDDALSAFQTALQYN--PQ-SAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 85 ~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+..+|++++|+..|++++.-. |. ..++++.+|.++..+|+.++|...+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999998654 65 5679999999999999999998774
No 195
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.26 E-value=6.4e-11 Score=82.58 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=67.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRK 114 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 114 (320)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|++.|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 367899999999999999999999999999999 99999999999999999999999999999999998843
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.25 E-value=3.3e-11 Score=86.66 Aligned_cols=88 Identities=9% Similarity=0.025 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ--WEKGYFR 80 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~ 80 (320)
.|.++..++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+ +..+...
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999884 4555555
Q ss_pred HHHHHHHccC
Q 020914 81 KGCILEAMEQ 90 (320)
Q Consensus 81 lg~~~~~~~~ 90 (320)
+...+..+++
T Consensus 95 l~~~l~~l~~ 104 (115)
T 2kat_A 95 LQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 5555554443
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.4e-10 Score=101.59 Aligned_cols=179 Identities=12% Similarity=0.092 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP------TLFSNRAAAFLHLVKLNKALADAETTISLNP------ 72 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------ 72 (320)
....++..+|.+|...|++++|++.+.+++...+... .+...+|.++...|++++|+..+++++...+
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 3456799999999999999999999999998765542 4567789999999999999999999988643
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hHH
Q 020914 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ-HLD 145 (320)
Q Consensus 73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~ 145 (320)
....++..+|.+|...|+|++|+..+++++.. .|....++..+|.++...|++++|...+.....+.... ...
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 34678999999999999999999999999886 33346789999999999999999988754322222111 122
Q ss_pred HHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhhcc
Q 020914 146 EFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHETS 183 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 183 (320)
.....+....|..+...+.+..+...+.++.+.+....
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 34456677778888888889999999988888776544
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.19 E-value=2.8e-10 Score=78.37 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 37 DPSNPTLFSNRAAAFLHLVK---LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 37 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+|+++.++..+|.++...++ .++|...++++++++|+++.+++.+|.+++..|+|++|+..++++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 58888899999998877766 68999999999999999999999999999999999999999999999888843
No 199
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.16 E-value=6e-10 Score=82.80 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHH
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLV---KLNKALADAETTISLN-P-QWEKGYFRKGCILEAMEQYDDALS 96 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~~~~~A~~ 96 (320)
....+.+.|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ | +..+++|.+|..++++|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567888899999999999999999999999998 6779999999999998 7 678999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHH
Q 020914 97 AFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 97 ~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
+++++|+++|++..+......+.
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999886655443
No 200
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.13 E-value=2.3e-09 Score=100.22 Aligned_cols=213 Identities=9% Similarity=-0.018 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 24 LKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKAL-ADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 24 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
+.....|++++...|.++.+|+..+......|+.++|+ ..|++|+...|.+...|+..+......|+++.|.+.|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hh-----------CCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhh
Q 020914 103 QY-----------NPQ-----------SAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEEC 160 (320)
Q Consensus 103 ~~-----------~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (320)
.. .|. ...+|...+.+....|..+.|..++... +... ......++...+....
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A--~~~~---~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC--RRLK---KLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--HHTG---GGSCTHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhc---CCCChHHHHHHHHHHH
Confidence 85 253 3457888888888888888887765322 1110 0011122222233332
Q ss_pred hhh-HHHHHHHHHHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHh-------hHH
Q 020914 161 WKH-VFSFVVETMETAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFL-------RQY 229 (320)
Q Consensus 161 ~~~-~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~-------~~~ 229 (320)
..+ ....|...|+.+++.++....+.-. .....|+.+.|...|++++...|.. ...+.++... |..
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~---~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS---HLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST---THHHHHHHHHHHHHHHTCCS
T ss_pred HhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHcCCH
Confidence 222 2567788888888777764433322 4456799999999999999987741 1122222222 222
Q ss_pred --HHHHHHHHhchhCCC
Q 020914 230 --ADDSFSSAACLVAPK 244 (320)
Q Consensus 230 --A~~~~~~al~~~~~~ 244 (320)
+...++++.+..|+.
T Consensus 558 ~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 558 NSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 788889999875544
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=1.3e-09 Score=91.40 Aligned_cols=196 Identities=9% Similarity=-0.016 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 26 AAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 26 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
|+..+++.++..+....++..+|.++...|++++|+..+.+++..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666665544555556777777777777777777777766665 6666777777777777777777777777766
Q ss_pred hCCC----CHHHHHHHH--HHHHHHH--HHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHH
Q 020914 104 YNPQ----SAEVSRKIK--RVSQLAK--DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETA 175 (320)
Q Consensus 104 ~~p~----~~~~~~~l~--~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 175 (320)
.+|+ +..+...++ .+....| ++++|..+++ ...+..+... ...+... ++...|.+..|.+.++..
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~--El~~~~p~~~--~~~lLln---~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYE--ELSQTFPTWK--TQLGLLN---LHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHH--HHHTTSCSHH--HHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHH--HHHHhCCCcc--cHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence 6663 222333333 2244444 5666654432 1111111100 0011111 455566666666666655
Q ss_pred HHhHhhc------cccChh-------HHhhhcChhHHHHhhhhhhccccCcCCccchhhHHHHhhHH--HHHHHHHHhch
Q 020914 176 VKSWHET------SKVDAK-------VYFLLDKEKTDTEKYAPIVNVDKAFESPHTHGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 176 ~~~~~~~------~~~~~~-------~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
...++.. -.-+|. +...+|+ +|.+.++++.+..|+.... ..+ ....|++++..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i----------~d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI----------KHHQEIDAKFDELVRK 305 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH----------HHHHHHHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH----------HHHHHHHHHHHHHHHH
Confidence 5444321 111222 4445576 7888889999988874322 333 55566666644
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.09 E-value=5.9e-10 Score=76.72 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914 2 AAEAEEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 75 (320)
+.|+++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+..++++++.+|..+
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 468899999999999987766 79999999999999999999999999999999999999999999999999843
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.08 E-value=7.2e-10 Score=98.27 Aligned_cols=103 Identities=11% Similarity=0.070 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC---C
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQ---W 74 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~---~ 74 (320)
...+......|+|++|+..|++++++ .|++ ..++.++|.+|..+|+|++|+..++++|.+ .|+ -
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 33444445678999999999999975 4555 577999999999999999999999999986 344 4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSR 113 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 113 (320)
...+.++|.+|..+|++++|+..|++|+++ .|+++.+..
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 567999999999999999999999999997 677776543
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.07 E-value=7.8e-10 Score=98.16 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQ 73 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~ 73 (320)
+..+......+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+..++++|.+ .|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 344555566778899999999999999975 3444 578999999999999999999999999986 344
Q ss_pred C---HHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 020914 74 W---EKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSR 113 (320)
Q Consensus 74 ~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 113 (320)
+ ...++++|.+|..+|++++|+..|++|+++ .|+++.+..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 4 567999999999999999999999999987 677766543
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=3.6e-09 Score=88.80 Aligned_cols=148 Identities=7% Similarity=-0.036 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020914 60 ALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP--QSAEVSRKIKRVSQLAKDKKRAQEVENIRSN 137 (320)
Q Consensus 60 A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 137 (320)
|+..+++.+...+....+++.+|.++...|++++|++.+.+++..+| ++.+++..++.++...|+.+.|.+.......
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666665544555556666666666666666666666666665 5666666666666666666666655322111
Q ss_pred hHHH--HhHHHHHHHHhhhhcchhhhhh--HHHHHHHHHHHHHHhHhh--ccccChhHHhhhcChhHHHHhhhhhhcc
Q 020914 138 VDMV--QHLDEFKSEMSEKYGAEECWKH--VFSFVVETMETAVKSWHE--TSKVDAKVYFLLDKEKTDTEKYAPIVNV 209 (320)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~a~~~~~~--~~~~~~~~~~~lg~~~~A~~~~~~a~~~ 209 (320)
.... ..-+.... ...-+.+....| .+..+...|++....++. ...+.-+++..+|++++|...++.+++.
T Consensus 165 ~~~d~~~~~d~~l~--~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 AIEDTVSGDNEMIL--NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HSCHHHHHHHHHHH--HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred cCccccccchHHHH--HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1110 00001111 111111111111 344455555555555543 1111111666666666666666655555
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=2.4e-09 Score=79.71 Aligned_cols=105 Identities=13% Similarity=0.042 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHH
Q 020914 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA----MEQYDDALS 96 (320)
Q Consensus 21 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~----~~~~~~A~~ 96 (320)
+++++|+..|+++.+..+.. +. +|.+|...+..++|+..|+++.+. +++.+++++|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 46778888888888776433 33 888888878888888888888776 677888888888887 778888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 020914 97 AFQTALQYNPQSAEVSRKIKRVSQL----AKDKKRAQEVEN 133 (320)
Q Consensus 97 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~ 133 (320)
.|+++.+. .++.+...+|.++.. .+++++|...+.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 88888775 677888888888877 677777766643
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.02 E-value=3.2e-09 Score=78.96 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=88.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLH----LVKLNKALADAETTISLNPQWEKGYFRKGCILEA- 87 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~- 87 (320)
+|.++...+.+++|+..|+++.+. .++.+++++|.+|.. .+++++|+..|+++.+. .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 889999999999999999999987 579999999999999 89999999999999987 789999999999999
Q ss_pred ---ccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 020914 88 ---MEQYDDALSAFQTALQYNPQSAEVSRKIK 116 (320)
Q Consensus 88 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 116 (320)
.+++++|+..|+++.+. .++.+...++
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 99999999999999987 4556655554
No 208
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.01 E-value=3.4e-09 Score=74.67 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQD-------PSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYF 79 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 79 (320)
+...+.+|..++..|+|..|+..|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4555666666666666666666666666542 123444555555555555555555555555555555555444
Q ss_pred HHH
Q 020914 80 RKG 82 (320)
Q Consensus 80 ~lg 82 (320)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.99 E-value=9.8e-09 Score=87.72 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-------HHH-HHHH--HHHhcCC
Q 020914 6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLN-------KAL-ADAE--TTISLNP 72 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-------~A~-~~~~--~al~l~p 72 (320)
.+..++.+|..++..++ +.+|+.+|++|++++|+++.++..++.+|.....+. .++ ..++ .++..+|
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~ 274 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence 46677888888887654 589999999999999999999999999997432211 111 1222 2346789
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
.++.++..+|.++...|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999975 778899999999999999998775
No 210
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.98 E-value=3.9e-09 Score=98.71 Aligned_cols=205 Identities=9% Similarity=-0.030 Sum_probs=150.9
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAA-ALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL----------- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------- 70 (320)
.|..+..|+..+......|+.++|+ ..|++|+...|.+..+|...+......|++++|...|++++..
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3567788999999999999999997 9999999999999999999999999999999999999999975
Q ss_pred CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 020914 71 NPQ-----------WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAEVSRKIKRVSQLAKD-KKRAQEVENIRSN 137 (320)
Q Consensus 71 ~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~ 137 (320)
.|. ...+|...+....+.|..+.|...|.+|++. .+....+|...+.+....+. .+.|..+++ ..
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife--~~ 496 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE--LG 496 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH--HH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH--HH
Confidence 253 4568999999999999999999999999998 55556777777766655543 677766542 22
Q ss_pred hHHHHhHHHHHHHHhhhhcchhhhhhHHHHHHHHHHHHHHhHhh---ccccChh---HHhhhcChhHHHHhhhhhhcccc
Q 020914 138 VDMVQHLDEFKSEMSEKYGAEECWKHVFSFVVETMETAVKSWHE---TSKVDAK---VYFLLDKEKTDTEKYAPIVNVDK 211 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~ 211 (320)
+... +....+...+.+.....|....+...|+.|+...+. ...+... .-...|+.+.+...++++.+..|
T Consensus 497 Lk~~----p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 497 LKYF----ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 2222 222333344455555555666666666666544331 1111111 33355999999999999999988
Q ss_pred Cc
Q 020914 212 AF 213 (320)
Q Consensus 212 ~~ 213 (320)
..
T Consensus 573 ~~ 574 (679)
T 4e6h_A 573 EV 574 (679)
T ss_dssp TC
T ss_pred CC
Confidence 74
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.98 E-value=1.1e-08 Score=72.12 Aligned_cols=79 Identities=9% Similarity=-0.054 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLN-------PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
++.-++.+|..++..|+|..|+..|++|++.. +..+.++..+|.++.++|++++|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678999999999999999999999999863 34578999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 020914 113 RKIKRV 118 (320)
Q Consensus 113 ~~l~~~ 118 (320)
.+++.+
T Consensus 84 ~n~~~~ 89 (104)
T 2v5f_A 84 GNLKYF 89 (104)
T ss_dssp HHHHHH
T ss_pred hhHHHH
Confidence 887743
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.94 E-value=2.2e-09 Score=96.70 Aligned_cols=103 Identities=6% Similarity=-0.066 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 70 (320)
.|.-+..+.++|.+|..+|+|++|+.++++++++ .|++ +..+.++|.+|..+|++++|+..|++|+.+
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~ 426 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVT 426 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999965 4444 578999999999999999999999999986
Q ss_pred -CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914 71 -NPQW---EKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 71 -~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
-|++ .....+++.++..++++++|...|+++.+..
T Consensus 427 lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 427 HGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 4567889999999999999999999986644
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.88 E-value=9.3e-09 Score=84.43 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHH
Q 020914 2 AAEAEEMSLKDKGNEFFK-----AGN------YLKAAALYTQAIKQDPS--NPTLFSNRAAAFLHL-----VKLNKALAD 63 (320)
Q Consensus 2 ~~p~~a~~~~~~g~~~~~-----~g~------~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~-----g~~~~A~~~ 63 (320)
..|++++.++-.|.+... .|. ...|...+++|++++|+ +..+|..+|..|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 357788888888777743 233 57899999999999999 677999999999996 999999999
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHH-ccCHHHHHHHHHHHHhhCCCC
Q 020914 64 AETTISLNPQW-EKGYFRKGCILEA-MEQYDDALSAFQTALQYNPQS 108 (320)
Q Consensus 64 ~~~al~l~p~~-~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~ 108 (320)
|++||+++|+. ..+++..|..+.. .|++++|.+.+++++..+|..
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999975 9999999999988 599999999999999998874
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=2.8e-08 Score=73.80 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAG---NYLKAAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
|.+.++.++.|.++...+ +.++++..++..++.+ | ...++++++|..+.++|+|++|+.+++++|+++|++.++.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 456889999999999988 7779999999999998 7 5689999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 020914 79 FRKGCIL 85 (320)
Q Consensus 79 ~~lg~~~ 85 (320)
..+-.+-
T Consensus 109 ~Lk~~ie 115 (152)
T 1pc2_A 109 ELERLID 115 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 215
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.68 E-value=5.1e-07 Score=64.60 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=87.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHH
Q 020914 19 KAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNK---ALADAETTISLN-P-QWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 19 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~l~-p-~~~~~~~~lg~~~~~~~~~~~ 93 (320)
.......+...|.+.+..++....+-+++|+++.+..+... +|..++..+..+ | ..-+++|.+|..++++|+|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34456678888888888888899999999999999988776 999999999887 5 567899999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHH
Q 020914 94 ALSAFQTALQYNPQSAEVSRKIKRVS 119 (320)
Q Consensus 94 A~~~~~~al~~~p~~~~~~~~l~~~~ 119 (320)
|+.+++..|++.|++.++......+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999999876554443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.62 E-value=2.2e-07 Score=79.46 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHHHHHHcCC-------HHHHHH-HHH--HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q 020914 3 AEAEEMSLKDKGNEFFKAGN-------YLKAAA-LYT--QAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNP 72 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~-------~~~A~~-~~~--~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 72 (320)
.|+.+.++-.++.++..... ..+++. .+. .++..+|.++.++..+|.++...|++++|+..+++|+.++|
T Consensus 229 DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~ 308 (372)
T 3ly7_A 229 SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308 (372)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 47777777777777752211 111111 122 22356799999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+ ..+|..+|.++...|++++|++.|++|+.++|...
T Consensus 309 s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 309 S-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4 78899999999999999999999999999999875
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.60 E-value=1.1e-06 Score=72.33 Aligned_cols=129 Identities=10% Similarity=0.089 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHHc------CCHHHHHHH-----HHHHH-hcCCCCHHHHHHHHHHHHH---c--c------CHHHH
Q 020914 4 EAEEMSLKDKGNEFFKA------GNYLKAAAL-----YTQAI-KQDPSNPTLFSNRAAAFLH---L--V------KLNKA 60 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~------g~~~~A~~~-----~~~al-~~~p~~~~~~~~lg~~~~~---~--g------~~~~A 60 (320)
|..+..++.+|.-|... ..+.+++.. +.+++ +.+|+++++++..|.+... . | ...+|
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 34556666666655322 344444432 34444 5578888888888877754 2 2 35799
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-HHHHHHHHHH
Q 020914 61 LADAETTISLNPQ--WEKGYFRKGCILEAM-----EQYDDALSAFQTALQYNPQS-AEVSRKIKRVSQL-AKDKKRAQEV 131 (320)
Q Consensus 61 ~~~~~~al~l~p~--~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~~~ 131 (320)
...+++|++++|+ +..+|..+|.+|... |+.++|.++|++||+++|+. ..++..+|..+.. .++.+.+...
T Consensus 183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~ 262 (301)
T 3u64_A 183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA 262 (301)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999 677999999999996 99999999999999999975 9999999998877 4888888666
Q ss_pred H
Q 020914 132 E 132 (320)
Q Consensus 132 ~ 132 (320)
.
T Consensus 263 L 263 (301)
T 3u64_A 263 L 263 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.35 E-value=3.3e-05 Score=69.77 Aligned_cols=120 Identities=6% Similarity=-0.077 Sum_probs=59.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhc
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAK-DKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG 156 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (320)
|...+....+.+..+.|...|++| ...+....+|...+.+....+ +.+.|..+.+. .+...+. .+.+...+.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~--al~~~~~----~~~~~~~yi 361 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS--GLLKHPD----STLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH--HHHHCTT----CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH--HHHHCCC----CHHHHHHHH
Confidence 444444444567788888888888 433335566666666665555 36666655431 1111111 111222233
Q ss_pred chhhhhhHHHHHHHHHHHH---HHhHhhccccChhHHhhhcChhHHHHhhhhhhc
Q 020914 157 AEECWKHVFSFVVETMETA---VKSWHETSKVDAKVYFLLDKEKTDTEKYAPIVN 208 (320)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~a---~~~~~~~~~~~~~~~~~lg~~~~A~~~~~~a~~ 208 (320)
+.....|....+...++.+ ...|..... .-...|+.+.+...+++++.
T Consensus 362 d~e~~~~~~~~aR~l~er~~k~~~lw~~~~~----fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLEKTSRMWDSMIE----YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCBHHHHHHHHH----HHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHH
Confidence 3334445555555555554 222222221 11244777766666666663
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.35 E-value=9.1e-07 Score=78.45 Aligned_cols=86 Identities=9% Similarity=-0.034 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPSN---PTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 70 (320)
.|.-+..+.++|.+|..+|+|++|+.++++++.+ .|++ +..++++|.+|..+|++++|+..|++|+++
T Consensus 325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999999999999965 3444 577999999999999999999999999986
Q ss_pred -CCCCH---HHHHHHHHHHHHc
Q 020914 71 -NPQWE---KGYFRKGCILEAM 88 (320)
Q Consensus 71 -~p~~~---~~~~~lg~~~~~~ 88 (320)
-|+++ .++.+++.+...+
T Consensus 405 lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 405 HGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp TCTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHH
Confidence 46665 4556666666544
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.31 E-value=2.6e-06 Score=75.46 Aligned_cols=76 Identities=7% Similarity=-0.048 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----
Q 020914 3 AEAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-----DPS---NPTLFSNRAAAFLHLVKLNKALADAETTISL---- 70 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 70 (320)
.|.-+..+.++|.+|..+|+|++|+.++++++++ .|+ .+..+.++|.+|..+|++++|+..|++|+++
T Consensus 336 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 336 NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999965 344 4577999999999999999999999999986
Q ss_pred -CCCCHHHH
Q 020914 71 -NPQWEKGY 78 (320)
Q Consensus 71 -~p~~~~~~ 78 (320)
-|+++..-
T Consensus 416 lG~~Hp~~~ 424 (433)
T 3qww_A 416 HGKDHPYIS 424 (433)
T ss_dssp TCTTCHHHH
T ss_pred cCCCChHHH
Confidence 57776543
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.13 E-value=7.4e-05 Score=67.52 Aligned_cols=202 Identities=4% Similarity=-0.051 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
.+.....|++++...|..+.+|...+..+...|+.++|...|++|+.. |.+...|...+... ..+ +..+.+..+.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~ 269 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999 99988877655542 111 1111111111
Q ss_pred h----------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhcchhhhhh-HHHHHHHH
Q 020914 103 Q----------YNPQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYGAEECWKH-VFSFVVET 171 (320)
Q Consensus 103 ~----------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~ 171 (320)
. ..+....+|...+......+..+.|..++..... +. ....++...+......+ ....+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~----~~---~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGN----EG---VGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT----SC---CCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC----CC---CChHHHHHHHHHHHHHCCChHHHHHH
Confidence 1 0111246788888888788888888777543311 10 01123333333333334 47778888
Q ss_pred HHHHHHhHhhccccChh---HHhhhcChhHHHHhhhhhhccccCcCCccc-hhhHHHHhhHH--HHHHHHHHhch
Q 020914 172 METAVKSWHETSKVDAK---VYFLLDKEKTDTEKYAPIVNVDKAFESPHT-HGSCFQFLRQY--ADDSFSSAACL 240 (320)
Q Consensus 172 ~~~a~~~~~~~~~~~~~---~~~~lg~~~~A~~~~~~a~~~~~~~~~~~~-~g~~~~~~~~~--A~~~~~~al~~ 240 (320)
++.++..+++...+.-. .....|+.+.|...|+++.. ....|. ...+-...|.. +.+.+++++..
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99888877653322111 34567888999999998843 222232 22222333444 55567777753
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.11 E-value=3.8e-05 Score=56.16 Aligned_cols=109 Identities=11% Similarity=-0.033 Sum_probs=85.3
Q ss_pred chHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 3 AEAEEMSLKDKGNEFFKAGNY------LKAAALYTQAIKQDPSN--------PTLFSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 3 ~p~~a~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
+|.+.+.|..-....-..|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 567788888888888777888 78888888888766542 4566667754 56688888888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 69 SLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 69 ~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
++....+.+|...|.--.+.|+...|.+.+.+|+.+.|...+..
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 88777888888888888888888888888888888888776654
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.09 E-value=2.8e-05 Score=58.10 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC--
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQD---PSN------PTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW-- 74 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~-- 74 (320)
+++.....++..|.|+.|+-....++.+. |+- ..++..+|.+++..++|..|...|++||+.. |..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56778889999999999999999877653 331 3588999999999999999999999997752 111
Q ss_pred --------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 75 --------------------EKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 75 --------------------~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
.+..+.++.||..++++++|+..++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 1455666666666666666666554
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.08 E-value=1.3e-05 Score=57.34 Aligned_cols=82 Identities=11% Similarity=0.014 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLK---AAALYTQAIKQD-P-SNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGY 78 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 78 (320)
+.+.++.++.|.++....+... +|..++..+..+ | ..-+.++.+|..++++|+|++|..+++.+|+..|++.++.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 3457888999999999887766 999999998877 5 4568999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 020914 79 FRKGCIL 85 (320)
Q Consensus 79 ~~lg~~~ 85 (320)
-....+-
T Consensus 112 ~Lk~~i~ 118 (126)
T 1nzn_A 112 ELERLID 118 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.99 E-value=0.00042 Score=50.31 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 38 PSNPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 38 p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
+..+.+.+++|+++.+..+. .+++..++..+...|. .-+.+|.+|..+.++|+|++|..+.+..|++.|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45789999999999999865 4799999999998884 5789999999999999999999999999999999998875
Q ss_pred HHHHH
Q 020914 114 KIKRV 118 (320)
Q Consensus 114 ~l~~~ 118 (320)
....+
T Consensus 116 Lk~~I 120 (144)
T 1y8m_A 116 LKSMV 120 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.98 E-value=0.00016 Score=51.86 Aligned_cols=80 Identities=9% Similarity=-0.041 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKL---NKALADAETTISLNPQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKI 115 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 115 (320)
.+.+-+++|+++.+..+. .++|..++..++.+|. .-+.++.+|..+.++|+|++|..+.+.+|++.|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 679999999999998765 4799999999998884 578999999999999999999999999999999999987655
Q ss_pred HHHH
Q 020914 116 KRVS 119 (320)
Q Consensus 116 ~~~~ 119 (320)
..+.
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.79 E-value=0.00026 Score=50.74 Aligned_cols=80 Identities=11% Similarity=-0.044 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGN---YLKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRK 81 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 81 (320)
++++.++.|.++....+ ..++|..++..+..+|. .-+.++.+|..+.++|+|++|..+.+.+|+..|+|.++.-..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 45788888999988765 45799999999998884 478999999999999999999999999999999999887666
Q ss_pred HHHH
Q 020914 82 GCIL 85 (320)
Q Consensus 82 g~~~ 85 (320)
..+-
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 228
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.70 E-value=0.0052 Score=45.84 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--c--------------
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS--L-------------- 70 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l-------------- 70 (320)
.+--..++..++-.|+|..|+-.+. .-+.+.+.+.-+.||..+.+|.+|+.+++..+. .
T Consensus 33 ~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 33 PEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp -CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred hHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 3445667889999999999988764 234588888999999999999999999999993 2
Q ss_pred -CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 020914 71 -NPQWEK-GYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSR 113 (320)
Q Consensus 71 -~p~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 113 (320)
+|.+.+ .+..+|.++..+|+-+||+.+|.......|-.+.+-.
T Consensus 108 vd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred eccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 244444 4667899999999999999999999999987666543
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.70 E-value=0.00052 Score=49.82 Aligned_cols=81 Identities=12% Similarity=-0.027 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNY---LKAAALYTQAIKQDPS-NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFR 80 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 80 (320)
...++.++.++++....+. .+++..++..+..+|. .-+.++.+|..+.++|+|++|..+.+.+|+..|+|.++.-.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3567888999999988754 5799999999998885 46899999999999999999999999999999999988766
Q ss_pred HHHHH
Q 020914 81 KGCIL 85 (320)
Q Consensus 81 lg~~~ 85 (320)
...+-
T Consensus 117 k~~Ie 121 (144)
T 1y8m_A 117 KSMVE 121 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.68 E-value=0.0004 Score=50.85 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=82.0
Q ss_pred hcCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 35 KQDPSNPTLFSNRAAAFLHLVKL------NKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 35 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
-+.|++++.|..........|+. ++-++.|++|+..-|- +...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 46899999999999999989999 8999999999987653 34567777754 677999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 101 ALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 101 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
+++++...+.+|...++...+.|+...|..+.
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkIL 117 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLL 117 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 99998889999999999999999999997664
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.58 E-value=0.0004 Score=51.92 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhC------C
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW---------EKGYFRKGCILEAMEQYDDALSAFQTALQYN------P 106 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p 106 (320)
.+++.-...+...|.|+.|+-....++.+..++ ..++..+|++++..++|..|...|++||+.. |
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666777888999999999999887764332 3478999999999999999999999998751 1
Q ss_pred C-------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 107 Q-------------------SAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 107 ~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
. +.++.+.++.|+..++++++|+...+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 1 12688999999999999999987743
No 232
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.34 E-value=0.011 Score=53.36 Aligned_cols=159 Identities=14% Similarity=0.032 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHhcCC-CCHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQ--DPSNPTLFSNRAAAFLHLV---------KLNKALADAETTISLNP-QWEKG 77 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~l~p-~~~~~ 77 (320)
+...-+.+.+.|+.++|++.|+++.+. .| +...|..+-.++...+ ..++|.+.|++.....- -+..+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 344446677899999999999998865 34 5666766666665443 37889999988876532 26778
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhhhhc
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSEKYG 156 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (320)
|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+-..+...|+.++|.++..........+. ...+..+-
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-----~~ty~~Li 182 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-----EPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-----HHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHH
Confidence 8889999999999999999999988752 33677888888888889999999887543221111111 11233334
Q ss_pred chhhhhhHHHHHHHHHHH
Q 020914 157 AEECWKHVFSFVVETMET 174 (320)
Q Consensus 157 ~~~~~~~~~~~a~~~~~~ 174 (320)
..+...|..+.|...+++
T Consensus 183 ~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHH
Confidence 444555556666665554
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.15 E-value=0.013 Score=51.04 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------C--------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPS--------N--------------PTLFSNRAAAFLHLVKLNKALADAE 65 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~--------------~~~~~~lg~~~~~~g~~~~A~~~~~ 65 (320)
+.+...|......|+.+.|...+.+|+.+-.. . ..+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34555666667789999999999999987321 1 1344556777778888888888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 66 TTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 66 ~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
+++..+|-+..+|..+-.++...|+..+|++.|+++-+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888877644
No 234
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=97.07 E-value=0.0042 Score=55.66 Aligned_cols=79 Identities=6% Similarity=-0.027 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 020914 43 LFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQL 121 (320)
Q Consensus 43 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 121 (320)
.+..+|...+....+..|..+|.+|+.+.|++...|+++|.+....|+.-+|+-+|.+++......+.+..++..+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999999999988899999999887654
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.00 E-value=0.018 Score=51.92 Aligned_cols=112 Identities=12% Similarity=0.040 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 22 NYLKAAALYTQAIKQD-PSNPTLFSNRAAAFLHLVKLNKALADAETTISLN-PQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
..++|.+.|++..... +.+...|..+-..|.+.|+.++|+..|++..+.. +-+...|..+-..|.+.|+.++|.+.|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 4788999999887653 2267889999999999999999999999987753 2267788888899999999999999999
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 100 TALQYN-PQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 100 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
...+.. .-+..++..+-..+...|+.++|.++..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 998763 2366788888888999999999988755
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.69 E-value=0.028 Score=45.59 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=58.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKG 77 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 77 (320)
..+++.|+.++|++.....++.+|.++.....+-..+.-.|+|+.|..-++.+.+++|+....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 356788999999999999999999999999999999999999999999999999999987543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0066 Score=57.09 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
...-+...+..+...|+|+-|+.+.++|+...|.....|+.|+.||..+|+|+.|+-.++.+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34567777888888999999999999999999999999999999999999999999887766
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.60 E-value=0.018 Score=51.66 Aligned_cols=80 Identities=14% Similarity=0.010 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEA 87 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 87 (320)
..+..+|+.....+.+..|..+|.+|+.+.|++...++.+|.+....|+.-+|+-+|-+++....-.+.+.-++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999998877799999999888765
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.014 Score=55.01 Aligned_cols=111 Identities=16% Similarity=0.102 Sum_probs=81.8
Q ss_pred cCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-cCHHHHHHHHHHHHh--------cCCCCH----------HH
Q 020914 20 AGN-YLKAAALYTQAIKQDPSNPTLFSNRAAAFL--HL-VKLNKALADAETTIS--------LNPQWE----------KG 77 (320)
Q Consensus 20 ~g~-~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~-g~~~~A~~~~~~al~--------l~p~~~----------~~ 77 (320)
.|+ ++.|+..+++....+|.... ++..+.+.. .. .+--+|+....++++ +.+.+. ..
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 68899999999998886543 333333222 22 344577777777764 233332 24
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
+...+.-+...|+|+-|+++-++|+...|....+|..|+.+|..+|+++.|+-.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 455567677889999999999999999999999999999999999999999644
No 240
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.50 E-value=0.11 Score=45.03 Aligned_cols=176 Identities=13% Similarity=0.048 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH---
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP-----TLFSNRAAAFLH-LVKLNKALADAETTISLNPQWEK--- 76 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~--- 76 (320)
...+.+.+|..|...|++++-.+++......-+..+ .....+-..+.. -+..+.-++.+..+++...+.-.
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999999888877654433322 222222222222 13334444555555543222211
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hHHH
Q 020914 77 ---GYFRKGCILEAMEQYDDALSAFQTALQYNPQ--S----AEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQ-HLDE 146 (320)
Q Consensus 77 ---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~ 146 (320)
.-..+|..|+..|+|.+|.+.+.+.++--.. + .+++..-.+++...+++.++...+........+. ....
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 1225677777777777777777666653211 1 2334444455556666666655543222222111 1122
Q ss_pred HHHHHhhhhcchhh-hhhHHHHHHHHHHHHHHhHhh
Q 020914 147 FKSEMSEKYGAEEC-WKHVFSFVVETMETAVKSWHE 181 (320)
Q Consensus 147 ~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~ 181 (320)
....+...-|..+. ..+++..|-..|=++...|..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 33444444455555 566666666666555555543
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.68 E-value=0.12 Score=44.84 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC----HHHH
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQ----DPS--NPTLFSNRAAAFLHLVKLNKALADAETTISLN---PQW----EKGY 78 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~----~~~~ 78 (320)
.+|..|+..|+|.+|.+.+.+.++. +.. -.+++..-..+|..++++.++...+.+|.... +.+ +...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999999988853 211 14778888999999999999999999987653 122 3445
Q ss_pred HHHHHHHH-HccCHHHHHHHHHHHHhhC
Q 020914 79 FRKGCILE-AMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 79 ~~lg~~~~-~~~~~~~A~~~~~~al~~~ 105 (320)
..-|.++. ..++|..|...|-.+++-.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 66688999 8999999999999987543
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.35 Score=36.64 Aligned_cols=50 Identities=14% Similarity=-0.035 Sum_probs=42.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 15 NEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
......|+++.|.+..+.. ++...|..+|......|+++-|..+|.++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 4567889999999987754 5688999999999999999999999988743
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.16 Score=44.76 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH----HHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIKQDP---SNPTLFSNRAAAFLHLVKLNKALADAETTISLNP--QWE----KGYF 79 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~----~~~~ 79 (320)
++..+|..++..|++++|.++|.++..... .-.+++.....++...+++..+...++++-.+.. .++ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 567899999999999999999999886532 2368899999999999999999999999876522 222 3445
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 020914 80 RKGCILEAMEQYDDALSAFQTALQYNPQ 107 (320)
Q Consensus 80 ~lg~~~~~~~~~~~A~~~~~~al~~~p~ 107 (320)
..|.++...++|.+|...|-.++.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 5678888899999999999888776443
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.10 E-value=0.15 Score=48.45 Aligned_cols=103 Identities=14% Similarity=-0.007 Sum_probs=52.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYD 92 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~ 92 (320)
....+...|.+++|+...+ ++..-+ .....+|++++|.+..+ ..++...|..+|..+...++++
T Consensus 635 ~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHH
Confidence 3344455666666655432 222222 22345666666666542 2245566666666666666666
Q ss_pred HHHHHHHHH--------HhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 93 DALSAFQTA--------LQYNPQSAEVSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 93 ~A~~~~~~a--------l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 131 (320)
.|+++|.++ |.....+.+.+..++.+....|++..|...
T Consensus 699 ~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~ 745 (814)
T 3mkq_A 699 LAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNA 745 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 666666664 111234444444555444444444444433
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.95 E-value=0.27 Score=39.89 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=58.2
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 50 AFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 50 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
...+.|+.++|++.....++-+|.+......+-+++.-.|+++.|.+.++.+.+++|+....-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999876654
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.48 E-value=0.17 Score=43.86 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
.++..++..+...|++.+|+..+.+++..+|-+..+|..+-.++...|+..+|+..|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999988744
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.27 E-value=0.67 Score=43.97 Aligned_cols=99 Identities=13% Similarity=-0.047 Sum_probs=66.9
Q ss_pred HHHHHcCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 15 NEFFKAGNYLKAAA-LYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 15 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
......+++++|.+ .+. .-| +..........+...|.+++|+...+ ++.. .-......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~---~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQ---KFELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHH---HHHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCC--------Ccch---heehhhhcCCHHH
Confidence 34456788888876 431 111 02233667777888888888876652 2222 2334567899999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 94 ALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVENI 134 (320)
Q Consensus 94 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 134 (320)
|.+..+ ..++...|..+|......++++.|+..+..
T Consensus 671 A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 671 ARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 988754 346788999999999999999998877653
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.27 E-value=1.2 Score=33.30 Aligned_cols=70 Identities=11% Similarity=-0.000 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK--Q---------------DPSNPT-LFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~---------------~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
.+-+.+-...|+....+|..|+.++++.++ + +|.+.+ .+..+|..+.+.|+-++|+.++...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 456777888999999999999999999993 2 344444 4667899999999999999999998
Q ss_pred HhcCCCCH
Q 020914 68 ISLNPQWE 75 (320)
Q Consensus 68 l~l~p~~~ 75 (320)
....|-.+
T Consensus 141 f~~~~lf~ 148 (242)
T 3kae_A 141 FGKSFLFS 148 (242)
T ss_dssp HHHCCCHH
T ss_pred cCCccccc
Confidence 88776443
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.08 E-value=1.1 Score=39.60 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCH-
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-D-PSN----PTLFSNRAAAFLHLVKLNKALADAETTIS---LNPQWE- 75 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~- 75 (320)
.++....++.++...|++.+|...+.....- . ..+ .+.+......|...+++.+|...++++.. -.+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 4566778999999999999999999887531 1 111 57888899999999999999999988742 233333
Q ss_pred ---HHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 76 ---KGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 76 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
..+...|.++...++|.+|-.+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45677899999999999999999988764
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.11 E-value=2.3 Score=41.54 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIK-----QDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFR 80 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~ 80 (320)
..+..+-+.+.+.|+.++|...|.+.-+ ..| +...|..+-..|.+.|+.++|.+.|++..+. .| +...|..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 3577777899999999999999977543 344 6889999999999999999999999999875 45 6667777
Q ss_pred HHHHHHHccCH-HHHHHHHHHHHhh
Q 020914 81 KGCILEAMEQY-DDALSAFQTALQY 104 (320)
Q Consensus 81 lg~~~~~~~~~-~~A~~~~~~al~~ 104 (320)
+-.++.+.|+. ++|.+.|++..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 77788888985 7888999988875
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.66 E-value=0.63 Score=46.43 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=82.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---C-------------------
Q 020914 14 GNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL---N------------------- 71 (320)
Q Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~------------------- 71 (320)
...+...|.++-|... +..-|.++..-+-+|.++...|++++|..+|+++-.- +
T Consensus 819 ~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 3445566666655442 3456777888899999999999999999999887321 1
Q ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHHHHHHHHHHHH
Q 020914 72 -PQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS-AE----VSRKIKRVSQLAKDKKRAQEV 131 (320)
Q Consensus 72 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~----~~~~l~~~~~~~~~~~~A~~~ 131 (320)
...+..|+....++...+.++.+++.-+.|++..+.+ .. .|..+-......+++++|...
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 1123456777888889999999999999999876543 32 466666667777888887544
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.51 E-value=0.99 Score=45.03 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--------------------CCCHHHHHHHHHHHHHccCHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ---D--------------------PSNPTLFSNRAAAFLHLVKLNKALAD 63 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~--------------------p~~~~~~~~lg~~~~~~g~~~~A~~~ 63 (320)
+-.-+-+|.+++..|++++|..+|++|-.- + ...+..|......+.+.|.++.++++
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334588999999999999999999987321 0 11235677788899999999999999
Q ss_pred HHHHHhcCC-CCH----HHHHHHHHHHHHccCHHHHHHHHHH
Q 020914 64 AETTISLNP-QWE----KGYFRKGCILEAMEQYDDALSAFQT 100 (320)
Q Consensus 64 ~~~al~l~p-~~~----~~~~~lg~~~~~~~~~~~A~~~~~~ 100 (320)
.+.||+..+ ++. ..|.++=..+..+|+|++|...+..
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 999998754 433 2577778888999999999877643
No 253
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.17 Score=45.27 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW-------EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 109 (320)
+.++..+-..|...+.|++|.....++. .|.. ...++..|.++...++|.+|.+++..|+...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 6778889999999999999999999985 4432 45677889999999999999999999999888653
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.27 Score=43.29 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 74 WEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQS---AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 74 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
-..++..+|..|...|++++|.+.|.++.....+. .+.+..+.++....+++..+....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~ 191 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKL 191 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34567778888888888888888888777653332 355555666666677777765553
No 255
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.54 E-value=1.8 Score=32.67 Aligned_cols=54 Identities=22% Similarity=0.079 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTA 101 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 101 (320)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+++-|..+|+++
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 456666665 4689999999987765 67899999999999999999999999985
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.62 E-value=1.7 Score=40.01 Aligned_cols=80 Identities=10% Similarity=-0.071 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTAL 102 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 102 (320)
..++...+.++....+++...-...+. -.+.|+++.|...|++.-.-.+......|-+|.++..+|+.++|...|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344555555544333322222222233 3345777777777766544333456667777777777777777777777765
Q ss_pred h
Q 020914 103 Q 103 (320)
Q Consensus 103 ~ 103 (320)
.
T Consensus 347 ~ 347 (618)
T 1qsa_A 347 Q 347 (618)
T ss_dssp T
T ss_pred c
Confidence 4
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.50 E-value=9 Score=37.55 Aligned_cols=91 Identities=4% Similarity=-0.197 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISL----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN-PQSAEVSRKIK 116 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 116 (320)
..+..+-..|.+.|+.++|...|...-+. -.-+...|..+-..|.+.|+.++|.+.|++..+.. .-+..+|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45888889999999999999999775432 23367799999999999999999999999998752 23666777777
Q ss_pred HHHHHHHH-HHHHHHHH
Q 020914 117 RVSQLAKD-KKRAQEVE 132 (320)
Q Consensus 117 ~~~~~~~~-~~~A~~~~ 132 (320)
..+...|+ .++|.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp HHHHHHTCCHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHH
Confidence 77777676 35665553
No 258
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=86.76 E-value=1.7 Score=28.30 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 020914 4 EAEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQ 36 (320)
Q Consensus 4 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 36 (320)
...++.+...|.-++..++|.+|...|+++..+
T Consensus 50 e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 50 EKKARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 356788888888888888888888888888754
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.06 E-value=2.2 Score=38.19 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN-------PTLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
..+..+..+-..|...+.|++|..+..++. .|.. +..++.+|.++...++|.+|.+++..|+...|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 345567777888999999999999999984 4432 4668889999999999999999999999988754
No 260
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.88 E-value=12 Score=36.39 Aligned_cols=94 Identities=21% Similarity=0.087 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCC-------------------
Q 020914 13 KGNEFFKAGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTIS-LNP------------------- 72 (320)
Q Consensus 13 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p------------------- 72 (320)
+...+...|.++-|.+ .+..-|.++..-+-+|.+|...|++++|..+|++|-. +.+
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4556667777765543 4566778888888999999999999999999987642 110
Q ss_pred -C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCCHH
Q 020914 73 -Q--WEKGYFRKGCILEAMEQYDDALSAFQTALQY-NPQSAE 110 (320)
Q Consensus 73 -~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 110 (320)
+ ....|.....++...+-++-+++.-+.|+.. .+++..
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 1 1235667788888889999999999999975 344444
No 261
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.79 E-value=1.7 Score=28.42 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
..+..+...|...-..|+|++|+.+|..+++
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666666666665553
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.52 E-value=20 Score=31.40 Aligned_cols=104 Identities=11% Similarity=-0.063 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh-CC-CC----HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHhHHHHH
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQY-NP-QS----AEVSRKIKRVSQLAKDKKRAQEVENIRS-NVDMVQHLDEFK 148 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~ 148 (320)
.....++.+|...|++.+|...+.....- .. .+ .+.+....+++...+++.+|..+..... ............
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34577899999999999999988887532 11 11 3456666778888888888876643211 111112223344
Q ss_pred HHHhhhhcchhhhhhHHHHHHHHHHHHHHhH
Q 020914 149 SEMSEKYGAEECWKHVFSFVVETMETAVKSW 179 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 179 (320)
.......|..+...+.+..+-..|-++...+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 5555566666666666666666666655443
No 263
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=83.59 E-value=6.9 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
.+..+..+|...-..|+|++|+.+|.++++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444566666666666666666666666554
No 264
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=82.47 E-value=5.5 Score=25.04 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEVS 112 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 112 (320)
..+|..+...|++++|+.+|-+|+...|.-....
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567777778888888888888888877665544
No 265
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=82.27 E-value=1.7 Score=28.27 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=7.7
Q ss_pred HccCHHHHHHHHHHHHh
Q 020914 87 AMEQYDDALSAFQTALQ 103 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~ 103 (320)
..|+|++|+.+|..+++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34444444444444433
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.12 E-value=13 Score=34.35 Aligned_cols=123 Identities=7% Similarity=-0.134 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQAIKQDPSNP----TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCIL 85 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 85 (320)
....+...+...+.+.|...+.+.....+-+. ..+..+|.-....+...++...+.++....+++...-...+.+
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A- 295 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA- 295 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH-
Confidence 34445566666788999999987754332222 2222333333334435677777777665554444444444444
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 86 EAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 86 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
...|+++.|...|.+.-.-.+......+.+|......|+.++|..++.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~ 343 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILH 343 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467999999999987655444567788999999999999999877643
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.00 E-value=7.7 Score=27.99 Aligned_cols=81 Identities=10% Similarity=-0.068 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 20 AGNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 20 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
-|+...-+.+|-+. +- +.+..-.--..+..+|+-++--+.+...+.-+|-++..++.+|.+|.++|+..+|-+.+.
T Consensus 74 C~NlKrVi~C~~~~---n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHT---TC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 46777777777653 22 222222222455677888887777777777777789999999999999999999999998
Q ss_pred HHHhh
Q 020914 100 TALQY 104 (320)
Q Consensus 100 ~al~~ 104 (320)
+|=+.
T Consensus 150 ~AC~k 154 (172)
T 1wy6_A 150 EACKK 154 (172)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.55 E-value=10 Score=29.23 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=59.2
Q ss_pred HHHHHHHhc---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHH
Q 020914 28 ALYTQAIKQ---------DPSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDALS 96 (320)
Q Consensus 28 ~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~A~~ 96 (320)
..+++++.. ||....+|...+..+ ..+...++.+.|...... .-..+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 467777653 333357788777765 234467888888777654 55678899999999999999999999
Q ss_pred HHHHHHhhCC
Q 020914 97 AFQTALQYNP 106 (320)
Q Consensus 97 ~~~~al~~~p 106 (320)
.|+.+++..-
T Consensus 137 Vy~~GI~~~A 146 (202)
T 3esl_A 137 LLELGAENNC 146 (202)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998753
No 269
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=81.48 E-value=1.8 Score=28.07 Aligned_cols=13 Identities=15% Similarity=-0.028 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhc
Q 020914 58 NKALADAETTISL 70 (320)
Q Consensus 58 ~~A~~~~~~al~l 70 (320)
++|+....+|++.
T Consensus 9 ~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 9 DMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555444
No 270
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=80.24 E-value=3.6 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQ 32 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~ 32 (320)
.-.++..+...|+|++||++.++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 34445555555555555555443
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=80.08 E-value=5.4 Score=30.89 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN 40 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (320)
+.+.-.+-+|..++.+++|.+|.+.+..|+...|..
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 344455555555555566666666655555555443
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=79.90 E-value=6.5 Score=24.72 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS 39 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 39 (320)
..+|..+...|++++|+.+|-+|+...|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 34566666666666666666666666554
No 273
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.57 E-value=10 Score=24.49 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
+.+..+..+|...=..|+|++|+.+|..+++
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666777776666666654
No 274
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=78.05 E-value=4.3 Score=26.69 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
..+-.++..+...|+|++||++.+++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455566677777777777776666553
No 275
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=75.93 E-value=5.1 Score=25.98 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
..+...|...-..|+|++|+.+|..+
T Consensus 14 ~~l~~~Av~~D~~g~y~eAl~~Y~~a 39 (85)
T 2v6x_A 14 IELVQKAIDLDTATQYEEAYTAYYNG 39 (85)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444444444444443
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.34 E-value=9.6 Score=37.20 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC--------------------C--CHHHHHHHHHHHHHccCHHHHHHH
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIKQ-DP--------------------S--NPTLFSNRAAAFLHLVKLNKALAD 63 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p--------------------~--~~~~~~~lg~~~~~~g~~~~A~~~ 63 (320)
+-.-+-+|.+++..|++++|..+|++|-.- .+ . ....|......+...+-++.++.+
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344588999999999999999999987421 10 0 124677889999999999999999
Q ss_pred HHHHHhc-CCCCHH
Q 020914 64 AETTISL-NPQWEK 76 (320)
Q Consensus 64 ~~~al~l-~p~~~~ 76 (320)
.+.||+. .++++.
T Consensus 920 A~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 920 SLLADASKETDDED 933 (950)
T ss_dssp HHHHHHTCCSCCHH
T ss_pred HHHHHhhcccCCcc
Confidence 9999974 455554
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=74.93 E-value=5.6 Score=26.40 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 020914 25 KAAALYTQAI 34 (320)
Q Consensus 25 ~A~~~~~~al 34 (320)
.|+....+|+
T Consensus 14 ~Ai~lv~~Av 23 (93)
T 1wfd_A 14 AAVAVLKRAV 23 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.97 E-value=22 Score=25.64 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
++...|+-++=-+.+...+.-+|-+++....++..+...|+..+|.++.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 3445566655555555555555566777777777777777776666553
No 279
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=72.26 E-value=7.9 Score=36.02 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 40 NPTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 40 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
........|......|+|.-|.+..+.++..+|++..+...++.+|.++|.-.+
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777788888889999999999999999999999999999999988886543
No 280
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=70.96 E-value=6.6 Score=27.34 Aligned_cols=16 Identities=13% Similarity=0.079 Sum_probs=6.9
Q ss_pred ccCHHHHHHHHHHHHh
Q 020914 54 LVKLNKALADAETTIS 69 (320)
Q Consensus 54 ~g~~~~A~~~~~~al~ 69 (320)
.|+|++|+.+|..+++
T Consensus 31 ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3444444444444433
No 281
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=70.12 E-value=12 Score=28.90 Aligned_cols=33 Identities=6% Similarity=-0.175 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQW 74 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 74 (320)
...+.+|..+...++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 445556666666666666666666666655543
No 282
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=68.42 E-value=6.4 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=9.1
Q ss_pred HccCHHHHHHHHHHHHh
Q 020914 87 AMEQYDDALSAFQTALQ 103 (320)
Q Consensus 87 ~~~~~~~A~~~~~~al~ 103 (320)
..|+|++|+..|..+++
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44555555555555544
No 283
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=68.29 E-value=4.7 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
....+|+.+...|+|+.|+.+|+.+++
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 345677777778888888888877764
No 284
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=67.80 E-value=5.8 Score=27.63 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 57 LNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
.++|+....+|++.+ ..|+|++|+.+|..+++
T Consensus 15 l~kAi~lv~~Ave~D---------------~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQED---------------KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HccCHHHHHHHHHHHHH
Confidence 456777777776443 44666666666665554
No 285
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.26 E-value=10 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 020914 79 FRKGCILEAMEQYDDALSAFQTALQYNPQSAEV 111 (320)
Q Consensus 79 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 111 (320)
..+|..+...|+++.|+.+|-+|+...|.-...
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~L 56 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 56 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 457888888888888888888888887764443
No 286
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.11 E-value=5.4 Score=26.54 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQAIKQDPS 39 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 39 (320)
..+|..+...|+++.|+.+|-+|+...|+
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35666777777777777777666666553
No 287
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=64.56 E-value=27 Score=22.96 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020914 57 LNKALADAETTISLN 71 (320)
Q Consensus 57 ~~~A~~~~~~al~l~ 71 (320)
.+.|+....+|++.+
T Consensus 12 l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 12 STAAVAVLKRAVELD 26 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666665543
No 288
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.71 E-value=14 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=26.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 020914 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYNP 106 (320)
Q Consensus 55 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 106 (320)
..+++|..+..++|+++.. |.--..+.-|.+++..++++|.+..
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~ 60 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISS 60 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccc
Confidence 3467788888888877641 3333333445555666666666655
No 289
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=61.84 E-value=18 Score=33.66 Aligned_cols=56 Identities=5% Similarity=-0.034 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 73 QWEKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 73 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
.-.......|...+..|+|.-|.+....++..+|++..+...++.++..+|...+.
T Consensus 447 gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 447 GGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 34556677888888999999999999999999999999999999999988876543
No 290
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=59.72 E-value=11 Score=33.21 Aligned_cols=87 Identities=8% Similarity=-0.022 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcC-----CC--C-----H----HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCC--CH
Q 020914 22 NYLKAAALYTQAIKQD-----PS--N-----P----TLFSNRAAAFLHLVKLNKALADAETTISL--------NPQ--WE 75 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~-----p~--~-----~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~--~~ 75 (320)
..++|.....++...- |+ . - -...++-.+|+++|+..-+...++..-.. .|. -+
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4677888888887651 11 1 1 12344567899999999888877544222 221 24
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhh-CCCC
Q 020914 76 KGYFRKGCILEAMEQYDDALSAFQTALQY-NPQS 108 (320)
Q Consensus 76 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~ 108 (320)
..+|.+|.++...++|.+|.+++..|++. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 56888999999999999999999999998 7765
No 291
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=57.40 E-value=9.8 Score=24.25 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 020914 46 NRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 46 ~lg~~~~~~g~~~~A~~~~~~al 68 (320)
.+|.=|..+|+|+.|+.+|+.++
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 34445555555555555555444
No 292
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=56.96 E-value=22 Score=31.36 Aligned_cols=63 Identities=6% Similarity=-0.004 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC--C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCC
Q 020914 12 DKGNEFFKAGNYLKAAALYTQAIKQDP--S--------NPTLFSNRAAAFLHLVKLNKALADAETTISL-NPQW 74 (320)
Q Consensus 12 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~ 74 (320)
.+-.+|++.|+...+...++..-...+ . .+..+|.+|..+...++|.+|.+++..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 345788999999888888864432221 1 2577999999999999999999999999998 7754
No 293
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=53.97 E-value=8.2 Score=25.25 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=12.7
Q ss_pred cCHHHHHHHHHHHHhcC
Q 020914 55 VKLNKALADAETTISLN 71 (320)
Q Consensus 55 g~~~~A~~~~~~al~l~ 71 (320)
..+++|..+..++|..+
T Consensus 11 ~~h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 11 VFHKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45678888888888775
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=52.15 E-value=24 Score=22.88 Aligned_cols=12 Identities=8% Similarity=0.061 Sum_probs=5.4
Q ss_pred HHHHHHHhhCCC
Q 020914 96 SAFQTALQYNPQ 107 (320)
Q Consensus 96 ~~~~~al~~~p~ 107 (320)
+.|..+++..|+
T Consensus 44 e~ll~alk~e~d 55 (86)
T 4a5x_A 44 DLLLQVLKGTKD 55 (86)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHhhCCC
Confidence 344444444443
No 295
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=49.90 E-value=1.2e+02 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=32.4
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 60 ALADAETTISL-----NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 60 A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
++..|.+|+.. .-.+.-.|..+|..+++.+++.+|+..+-.|-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 55555555543 2345667788888999999999999888776654
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=48.81 E-value=78 Score=23.29 Aligned_cols=61 Identities=16% Similarity=0.074 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHH-HH--HHHHHccCHHHHHHHHHHHHhh
Q 020914 44 FSNRAAAFLHLVKLNKALADAETTISLNPQW------EKGYFR-KG--CILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~-lg--~~~~~~~~~~~A~~~~~~al~~ 104 (320)
-+..|..++..|+|=+|-+.++.+-...+.. ...+.+ ++ ..+.+.|+..-|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456667777799999999999888776554 334444 43 3445679999999999999874
No 297
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.99 E-value=92 Score=23.89 Aligned_cols=68 Identities=9% Similarity=-0.089 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQAI--KQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
.-...|...+..+ ..++..++...|.-.. .+.-..+..|..-|..+...|++++|...|+.+++..-.
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3334454444433 2344668888888776 456677899999999999999999999999999997643
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.95 E-value=1.2e+02 Score=25.21 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=60.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNP----QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
-...|--++..|++++|+..|+.+|..-| ++..--..+-.+......|--|..++..+..+....
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~----------- 185 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGN----------- 185 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTC-----------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----------
Confidence 45567778899999999999999998643 222211222223333344444444432222211100
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------HHhhhcChhHHHHhhhhhhccccC
Q 020914 154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (320)
Q Consensus 154 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~lg~~~~A~~~~~~a~~~~~~ 212 (320)
.....|-| .|-....+.|. ..+..+++..|...-++.+++.|.
T Consensus 186 --------------~kR~lELA--AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 186 --------------TVRMLELA--AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp --------------HHHHHHHH--HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred --------------HHHHHHHH--HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 01111111 12233333332 677889999999999999999885
No 299
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=47.75 E-value=65 Score=27.30 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 26 AAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 26 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
++..|.+||.. +..+.-.|..+|..+++.+++.+|+..+-.|-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 77777777754 445567788899999999999999999876643
No 300
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=45.99 E-value=51 Score=28.84 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 57 LNKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
|+..++.++.|+.+-|. ...++..+|.+|+.+|++++|++..++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45667777777766443 245788899999999999999999988885
No 301
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=44.78 E-value=53 Score=29.17 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914 57 LNKALADAETTISLNPQ-----------WEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
|+..++.++.|+..-|. ...++..+|.+|+.++++++|+...++++...
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35566777777765442 24578889999999999999999999998753
No 302
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=44.45 E-value=56 Score=28.59 Aligned_cols=48 Identities=17% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 23 YLKAAALYTQAIKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
|+..++.++.|+..-|. ...++..+|.+|+..|+|++|+...+++|..
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 34566666777665443 2568889999999999999999999999863
No 303
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=44.10 E-value=37 Score=22.97 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
++++..-.+....+.|+|++|.+.+++|
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555555555555555555555555544
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=43.69 E-value=1.4e+02 Score=24.91 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 10 LKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 10 ~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
+..+..-|.++++|++|++.+...
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G 61 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV 61 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH
Confidence 444555577788888888865543
No 305
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=43.26 E-value=1.4e+02 Score=24.66 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 020914 11 KDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 11 ~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
..+..-|..+++|++|++.+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g 59 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG 59 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH
Confidence 33444455566666666664433
No 306
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=43.21 E-value=39 Score=22.75 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
.++++..-.+....+.|+|++|.+.++++
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35556666666666666666666666554
No 307
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=42.43 E-value=65 Score=28.36 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914 57 LNKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
|+..++.++.|+.+-|. ...++..+|.+|+..|++++|++..++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 56777888888876553 24578889999999999999999999998753
No 308
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=42.40 E-value=59 Score=28.55 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 57 LNKALADAETTISLNPQ--------WEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
|+..++.++.|+.+-|. ...++..+|.+|..+|++++|++..++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 35666677777665443 245788888888888999999888888876
No 309
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=41.55 E-value=63 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLN 71 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (320)
++....-|.-+++.++|.+|...|+++..+.
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 4555555666667777777777777766543
No 310
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=41.15 E-value=61 Score=28.42 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 24 LKAAALYTQAIKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 24 ~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
+.-++.++.|+..-|. ...++..+|.+|+..|+|++|+...+++|..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4556666667665443 2578889999999999999999999999863
No 311
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=46.29 E-value=6 Score=36.85 Aligned_cols=52 Identities=8% Similarity=-0.002 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
......|...+..|+|+-|.+..+.++..+|++..+...++.+|.++|.-.+
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 3444455555566666666666666666666666666666666666665444
No 312
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=39.72 E-value=68 Score=28.26 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 23 YLKAAALYTQAIKQDPS--------NPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
|+.-++.++.|+..-|. ...++..+|.+|+..|+|++|++..+++|..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 45566667777765443 2468889999999999999999999999874
No 313
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.67 E-value=57 Score=22.48 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q 020914 21 GNYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISLNPQ 73 (320)
Q Consensus 21 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 73 (320)
..+++|..+..+||+++.. |.--..+..|.+++..++++|.+..+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3467788888888877641 33333344466666777777777654
No 314
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=38.88 E-value=74 Score=28.21 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914 24 LKAAALYTQAIKQDPS-----------NPTLFSNRAAAFLHLVKLNKALADAETTISLN 71 (320)
Q Consensus 24 ~~A~~~~~~al~~~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (320)
+..++.++.|+..-|. ...++..+|.+|+..|+|++|+...++++...
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3445555556554332 24688899999999999999999999999753
No 315
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=38.35 E-value=51 Score=22.46 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
.++++..-.+....+.|+|++|.+.+++|
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555566666666666666665554
No 316
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=36.58 E-value=60 Score=22.54 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 5 AEEMSLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 5 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
.++++..-.+....+.|+|++|.+.+++|
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666666677777777777776665
No 317
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=36.52 E-value=2.1e+02 Score=24.82 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=53.4
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHH
Q 020914 12 DKGNEFFKAG---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEKGYFRKGC 83 (320)
Q Consensus 12 ~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~ 83 (320)
.+-..++..| +|..|+..+-..=++.|.... ..++..|.+|+.. .-.+.--|..+|-
T Consensus 262 ~LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr---------------~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgG 326 (550)
T 3u84_A 262 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAG 326 (550)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTC---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHH
T ss_pred HHHHHHHhccchhhCchhhcchhhHhhcCCCCCC---------------CCHHHHHHHHHHHHHHHhccCCccceeecch
Confidence 3445555555 455666666555555554210 0244555555543 3346677888899
Q ss_pred HHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQY------NPQSAEVSRKI 115 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l 115 (320)
.+++.+++.+|+..+-.+-.. ..++.++|..+
T Consensus 327 y~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf 364 (550)
T 3u84_A 327 YHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEF 364 (550)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHH
Confidence 999999999999988777654 23445555443
No 318
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.51 E-value=1.2e+02 Score=26.33 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=60.0
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHH
Q 020914 12 DKGNEFFKAG---NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL-----NPQWEKGYFRKGC 83 (320)
Q Consensus 12 ~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~ 83 (320)
.+-..++..| +|.-|+..+-..-++.|.... ..++..|++|+.. .-...-.|..+|-
T Consensus 247 ~LLWlLyd~Ghl~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG 311 (489)
T 4gq4_A 247 KLLWLLYDLGHLERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAG 311 (489)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHH
T ss_pred HHHHHHHhccchhhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcccceeecch
Confidence 3445555555 678888888887777776521 1233455555543 3345677888899
Q ss_pred HHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHH
Q 020914 84 ILEAMEQYDDALSAFQTALQY------NPQSAEVSRKIK 116 (320)
Q Consensus 84 ~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~ 116 (320)
.+.+.++|.+|+..+-.+-.. ..++.+.+..+-
T Consensus 312 ~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~ 350 (489)
T 4gq4_A 312 YHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFF 350 (489)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHH
Confidence 999999999999999888764 445566665443
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.12 E-value=1.3e+02 Score=21.87 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHH
Q 020914 26 AAALYTQAIKQD---------PSNPTLFSNRAAAFLHLVKLNKALADAETTISL--NPQWEKGYFRKGCILEAMEQYDDA 94 (320)
Q Consensus 26 A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~~~~~~A 94 (320)
=...+++++... |....+|...+... +.+.+.|...... --..+..|...|..+...|++.+|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A 120 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHA 120 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 345566666442 22346666666542 3377777777654 456788999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 020914 95 LSAFQTALQYNPQ 107 (320)
Q Consensus 95 ~~~~~~al~~~p~ 107 (320)
.+.|+.+++.+-.
T Consensus 121 ~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 121 SAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTCB
T ss_pred HHHHHHHHHcCCc
Confidence 9999999997543
No 320
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.71 E-value=2.1e+02 Score=24.32 Aligned_cols=89 Identities=10% Similarity=-0.044 Sum_probs=63.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------C
Q 020914 16 EFFKAGNYLKAAALYTQAIKQD-----------------PSNPTLFSNRAAAFLHLVKLNKALADAETTISL-------N 71 (320)
Q Consensus 16 ~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------~ 71 (320)
+.....+.++|++.+++....- .....+...++..|...|+.++|...++++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3445678999999998764321 001345667888999999999999999888643 2
Q ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 72 PQ-WEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 72 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
|. ....|...|..|...+++..+...+-..+..
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~ 198 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLST 198 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 21 2455666788888999999988887777753
No 321
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=33.70 E-value=33 Score=17.85 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcC
Q 020914 56 KLNKALADAETTISLN 71 (320)
Q Consensus 56 ~~~~A~~~~~~al~l~ 71 (320)
-|++|+..|+.+++..
T Consensus 17 ayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 17 AYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3788888888877654
No 322
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=33.52 E-value=2.4e+02 Score=24.50 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=33.6
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHHHHHHHHH
Q 020914 55 VKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQY-----NPQSAEVSRKIKRVSQLAKDKKRAQ 129 (320)
Q Consensus 55 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~ 129 (320)
.+|.-|+-.+-..-++.|.... ..+++.|++|+.. ...+...|..+|-.+.+.+++.+|.
T Consensus 259 ~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl 323 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREAL 323 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHH
Confidence 3556666555555555554311 1233455555543 3344555666677666777777776
Q ss_pred HH
Q 020914 130 EV 131 (320)
Q Consensus 130 ~~ 131 (320)
..
T Consensus 324 ~~ 325 (489)
T 4gq4_A 324 QA 325 (489)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.64 E-value=1.5e+02 Score=21.80 Aligned_cols=63 Identities=6% Similarity=0.047 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHH-H--HHHHHHccCHHHHHHHHHHHHhc
Q 020914 8 MSLKDKGNEFFKAGNYLKAAALYTQAIKQDPSN------PTLFSN-R--AAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 8 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~-l--g~~~~~~g~~~~A~~~~~~al~l 70 (320)
..-+..|..++..|+|=+|=+.++.+-...+.. ...+.. + |....+.|+...|...+.+++..
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345678899999999999999999998776544 223333 3 33455679999999999999873
No 324
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=31.41 E-value=1.8e+02 Score=28.26 Aligned_cols=95 Identities=8% Similarity=0.008 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---C---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q 020914 6 EEMSLKDKGNEFFKAGNYLKAAALYTQAIKQDP---S---N----PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWE 75 (320)
Q Consensus 6 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 75 (320)
..-+++.+|.++...++ +++..+...+.-+. . . ..+-..+|.++...++ +++++.+...+.-+....
T Consensus 412 k~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~ 488 (963)
T 4ady_A 412 KGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATS 488 (963)
T ss_dssp HHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHH
Confidence 45677778877776664 68888877775432 0 1 1456678888776665 577788887776443221
Q ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 76 --KGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 76 --~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
.+-+.+|.++...|+-+-....++.+.+
T Consensus 489 ~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 489 GEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 3556778888888887666566665554
No 325
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.71 E-value=1.1e+02 Score=26.97 Aligned_cols=30 Identities=13% Similarity=0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
..++..+|.+|+..|++++|++..++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 357888999999999999999999999864
No 326
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.68 E-value=1.1e+02 Score=26.60 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 020914 8 MSLKDKGNEFFKA---GNYLKAAALYTQAIKQ-----DPSNPTLFSNRAAAFLHLVKLNKALADAETTI 68 (320)
Q Consensus 8 ~~~~~~g~~~~~~---g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 68 (320)
-++.++|+.--.. |+ ..++..|.+||.. +..+.-.|..+|-++++.+++.+|+..+-.+-
T Consensus 278 mALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 278 MALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 3455555554432 22 2478888888854 45567888999999999999999999986653
No 327
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=28.07 E-value=1.4e+02 Score=26.55 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
..++..+|.+|+..+++++|++..++++..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888888888888888864
No 328
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=27.91 E-value=99 Score=19.99 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAE 65 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~ 65 (320)
..|..=|..|...|++..|+.++.
T Consensus 36 ~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 36 EAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444444455544444443
No 329
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=27.30 E-value=1.1e+02 Score=19.81 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 020914 23 YLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETT 67 (320)
Q Consensus 23 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 67 (320)
++.|.++++. +..|+.=|..|...|++..|+.++.-+
T Consensus 29 ~~~a~~~l~m--------A~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 29 SDDEEAVVER--------ALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456666664 356777777777777777777776544
No 330
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=26.97 E-value=1.1e+02 Score=26.91 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
..++..+|.+|+..+++++|++..++++.
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34566666666666666666666666553
No 331
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=32.36 E-value=14 Score=34.42 Aligned_cols=54 Identities=6% Similarity=-0.038 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 020914 75 EKGYFRKGCILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQLAKDKKRA 128 (320)
Q Consensus 75 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 128 (320)
.......|...+..|+|.-|.+....++..+|++..+...++.++..+|...+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 344556777777889999999999999999999999999999988888876654
No 332
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=26.36 E-value=1e+02 Score=27.05 Aligned_cols=48 Identities=10% Similarity=-0.065 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhh
Q 020914 57 LNKALADAETTISLNP-------------QWEKGYFRKGCILEAMEQYDDALSAFQTALQY 104 (320)
Q Consensus 57 ~~~A~~~~~~al~l~p-------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 104 (320)
|+..++.++.|+.+-| +...++-.+|.+|+.++++++|++..++++..
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455666666655322 23457888999999999999999999999864
No 333
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=25.96 E-value=1.7e+02 Score=20.44 Aligned_cols=55 Identities=7% Similarity=-0.026 Sum_probs=27.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 46 NRAAAFLHLVKLNKALADAETT---ISLNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 46 ~lg~~~~~~g~~~~A~~~~~~a---l~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 103 (320)
..+.+|...++.++.+..++.. ++..|... .....+...-.+..+|.+.+++..+
T Consensus 45 eASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~---~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 45 EASRLYFGERNVKGMFEVLEPLHAMMERGPQTL---KETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHccCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3445556667777776666555 33344432 2222222233455666666666543
No 334
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=25.23 E-value=1.6e+02 Score=26.16 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 109 AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
..++..+++++...+++++|.+..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a 205 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSC 205 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999889999887653
No 335
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=25.02 E-value=1.1e+02 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 020914 42 TLFSNRAAAFLHLVKLNKALADAETTIS 69 (320)
Q Consensus 42 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (320)
.-+...|..|..-|+.+.|.-.|-+.+.
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~ 68 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYIT 68 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455667777777777777766666433
No 336
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=23.87 E-value=17 Score=29.21 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 22 NYLKAAALYTQAIKQDPSNPTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 22 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
....|+....+|++.+. .|+|++|+.+|..++++
T Consensus 19 ~~~~Ai~lv~~AVe~D~---------------~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDS---------------ESRYPQALVCYQEGIDL 52 (257)
T ss_dssp -------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHH
Confidence 45667777777777653 56666666666666654
No 337
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.45 E-value=1.6e+02 Score=25.77 Aligned_cols=30 Identities=13% Similarity=-0.064 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISL 70 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (320)
..++..+|.+|+..|+|++|+...++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 357888999999999999999999999964
No 338
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.33 E-value=2.7e+02 Score=21.71 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=32.6
Q ss_pred HHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhhC
Q 020914 59 KALADAETTIS--LNPQWEKGYFRKGCILEAMEQYDDALSAFQTALQYN 105 (320)
Q Consensus 59 ~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 105 (320)
.+...|..... +.-..+..|...|..+...|++.+|.+.|+.+++..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45555555544 344567777778888888888888888888887764
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.26 E-value=73 Score=24.74 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=28.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Q 020914 49 AAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDD 93 (320)
Q Consensus 49 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~ 93 (320)
.++...|.|++|.+.+++.+.-+|.+...-..|..+-.....+..
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccH
Confidence 445666777777777777777666666666666666555544443
No 340
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=22.63 E-value=1.7e+02 Score=22.73 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSA 109 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~ 109 (320)
...+..+..+... .+-..|+.+|..||...|-++.-.+..-.-|.+. ++-.=.+..|+.+...+|..+
T Consensus 93 ~etH~~RV~a~Ln-~rrr~Ale~y~~ALq~~pP~~~~vl~aLk~yirae~KDR~Htl~hf~Hv~~~dpe~A 162 (219)
T 3pmr_A 93 VETHATRVIALIN-DQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKA 162 (219)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHH
Confidence 3445555444432 3457888999999988877655444433334332 333446788888888888643
No 341
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.60 E-value=2.2e+02 Score=20.58 Aligned_cols=57 Identities=11% Similarity=0.035 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 71 NPQWEKGYFRKGCILEAMEQYDDALSAFQTALQ--YNPQSAEVSRKIKRVSQLAKDKKRAQEVEN 133 (320)
Q Consensus 71 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 133 (320)
||.....|...+... .++.+.|..... +....+..|...+..+...|++.+|.+++.
T Consensus 67 D~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 67 DPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp CHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344456666666542 447777877765 456778889999999999999999988864
No 342
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.57 E-value=2e+02 Score=25.12 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLN 71 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (320)
..++..+|.+|+..++|++|+...++++...
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4688899999999999999999999999753
No 343
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=22.42 E-value=2.5e+02 Score=21.57 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhhCCCCHH
Q 020914 41 PTLFSNRAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAM--EQYDDALSAFQTALQYNPQSAE 110 (320)
Q Consensus 41 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~ 110 (320)
...+..+..+... .+-..|+.+|..|+..+|-++.-...--.-|.+. ++-.-.+..|+.+...+|..+.
T Consensus 86 ~etH~qRV~a~ln-~rrr~Ale~y~~ALq~~pp~~~~il~aLk~yirae~KDR~Hti~hy~Hv~~~dpe~A~ 156 (211)
T 3umh_A 86 VETHMARVEAMLN-DRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHFEHVRMVDPKKAA 156 (211)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCHHHHH
Confidence 3445554444322 3457788888888888877655444333333332 3334467888888888886654
No 344
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=22.08 E-value=1.1e+02 Score=26.87 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020914 109 AEVSRKIKRVSQLAKDKKRAQEVE 132 (320)
Q Consensus 109 ~~~~~~l~~~~~~~~~~~~A~~~~ 132 (320)
..++..+++++...+++++|.+..
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a 203 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVL 203 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 457888999999999999997764
No 345
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=21.86 E-value=3.3e+02 Score=23.32 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
..-.+|+-+...|+...|.-||--+
T Consensus 250 Lc~~LG~RL~~~g~~~~A~lCYi~A 274 (399)
T 2pm7_A 250 MMIKLGDRMKENGHRQDSLTLYLAA 274 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhHHHHhh
Confidence 3357777777777777777777655
No 346
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.61 E-value=3.5e+02 Score=22.41 Aligned_cols=111 Identities=12% Similarity=0.211 Sum_probs=60.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHHHHhh
Q 020914 78 YFRKGCILEAMEQYDDALSAFQTALQYNP----QSAEVSRKIKRVSQLAKDKKRAQEVENIRSNVDMVQHLDEFKSEMSE 153 (320)
Q Consensus 78 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
-...|--++..|++++|+..|+.+|..-| ++..--..+-.+.....+|--|..++..+..+....
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~----------- 173 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKET----------- 173 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCS-----------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-----------
Confidence 45667788899999999999999998754 232222222233333344444444432222211000
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHhHhhccccChh-----------HHhhhcChhHHHHhhhhhhccccC
Q 020914 154 KYGAEECWKHVFSFVVETMETAVKSWHETSKVDAK-----------VYFLLDKEKTDTEKYAPIVNVDKA 212 (320)
Q Consensus 154 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~lg~~~~A~~~~~~a~~~~~~ 212 (320)
.+......|-| .|-....+.|. ..+..+++..|...-++.+++.|.
T Consensus 174 -----------~~~~kR~lELA--AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 174 -----------LEQQKRICEMA--AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp -----------HHHHHHHHHHH--HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred -----------chhHHHHHHHH--HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 00001111111 12222333332 677888999999999999998775
No 347
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=21.33 E-value=3.3e+02 Score=23.64 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 020914 9 SLKDKGNEFFKAGNYLKAAALYTQA 33 (320)
Q Consensus 9 ~~~~~g~~~~~~g~~~~A~~~~~~a 33 (320)
-+..+++.+...|+|.||--++...
T Consensus 37 ~l~~L~~~h~~~~ny~EAa~~l~lh 61 (436)
T 2yin_A 37 YLYKLRDLHLDCDNYTEAAYTLLLH 61 (436)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3466788888888888888887443
No 348
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=20.87 E-value=33 Score=15.88 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=9.7
Q ss_pred hhhhchHHHhhhcc
Q 020914 305 AHEVFPRLFKEKLS 318 (320)
Q Consensus 305 ~~~~~~~~~~~~~~ 318 (320)
....|+.||++--|
T Consensus 6 frkkfkklfkklsp 19 (27)
T 2ket_A 6 FRKKFKKLFKKLSP 19 (27)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCc
Confidence 45678888887544
No 349
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.63 E-value=1.9e+02 Score=18.91 Aligned_cols=55 Identities=7% Similarity=-0.061 Sum_probs=29.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHccCHHHHHHHHHHHHh
Q 020914 47 RAAAFLHLVKLNKALADAETTISLNPQW----EKGYFRKGC--ILEAMEQYDDALSAFQTALQ 103 (320)
Q Consensus 47 lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~--~~~~~~~~~~A~~~~~~al~ 103 (320)
.|..++..|+|=+|-+.++.+-.-.|+. ...+.+++. .+...|+. |...+.+++.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3444555566666666666666555432 223334433 33345555 7777777765
No 350
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=20.35 E-value=1.4e+02 Score=17.29 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 020914 7 EMSLKDKGNEFFKAGNYLKAAALYTQAIK 35 (320)
Q Consensus 7 a~~~~~~g~~~~~~g~~~~A~~~~~~al~ 35 (320)
++.+...+...+.-.+...|++.+++|++
T Consensus 20 AqK~aK~AiSAL~feDv~tA~~~L~~AL~ 48 (53)
T 2rkl_A 20 IQKLAKYAISALNYEDLPTAKDELTKALD 48 (53)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 34444455555555555566665555554
No 351
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.27 E-value=62 Score=24.77 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=29.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 020914 47 RAAAFLHLVKLNKALADAETTISLNPQWEKGYFRKGCILEAMEQYDDALSAFQ 99 (320)
Q Consensus 47 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 99 (320)
.-.++...|.+++|.+.+++...-+|++...-..|..+-.....+..=++.|.
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lqnFS 175 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFS 175 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHHHSC
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHHHcc
Confidence 34556667777777777777777666666666666666555555555554443
No 352
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.02 E-value=1.2e+02 Score=23.49 Aligned_cols=38 Identities=8% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 020914 83 CILEAMEQYDDALSAFQTALQYNPQSAEVSRKIKRVSQ 120 (320)
Q Consensus 83 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 120 (320)
.++.+.|.|++|.+.+++...-+|++......|..+-.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~ 159 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIR 159 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Confidence 56788999999999999999988888777777766543
Done!