BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020916
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 32/253 (12%)
Query: 71 GFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADR---SPTFQAQCLATGLAKL 127
G W+ + AL+K Y V PD++ FG TD + S + + L
Sbjct: 35 GPGVSAYANWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHIIGIMDAL 92
Query: 128 GVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSEL 187
++K +VG S+GG ++ A Y V MV+ G++ D N +
Sbjct: 93 EIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTEGLN---------AVW 143
Query: 188 LLPNSVKGLKALLSVATYK---------KLWFPSCLYKDFLE---VMFANRKERAELLEG 235
S++ ++ LL + Y +L + + + F E MF ++R ++
Sbjct: 144 GYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQR--WIDA 201
Query: 236 LLISNKDPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLE 295
L S++D + P ++ G +DQ+ V L+ +++ D + GH +E
Sbjct: 202 LASSDED--IKTLPNETLIIHGREDQV--VPLSSSLRLGELIDRAQLHVFGRCGHWTQIE 257
Query: 296 RPCAYNRCLKQFL 308
+ +NR + +F
Sbjct: 258 QTDRFNRLVVEFF 270
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 106/248 (42%), Gaps = 38/248 (15%)
Query: 79 TWQFQVGALTKKYSVYIPDLLFFGGSITDEADR---SPTFQAQCLATGLAKLGVDKCVLV 135
W+ + AL+K Y V PD++ FG TD + S + + L ++K +V
Sbjct: 43 NWRLTIPALSKFYRVIAPDMVGFG--FTDRPENYNYSKDSWVDHIIGIMDALEIEKAHIV 100
Query: 136 GFSYGGMVSFKVAELYPNLVQAMVV---SGSILAMTDSINETNLNRLGVSSSSELLLPNS 192
G ++GG ++ A Y V MV+ +G+ +T+ +N G + S
Sbjct: 101 GNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAV----WGYTP--------S 148
Query: 193 VKGLKALLSVATYK---------KLWFPSCLYKDFLE---VMFANRKERAELLEGLLISN 240
++ ++ LL + Y +L + + + F E MF ++R ++ L S+
Sbjct: 149 IENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQR--WIDALASSD 206
Query: 241 KDPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAY 300
+D + P ++ G +DQ+ V L+ +++ D + GH +E+ +
Sbjct: 207 ED--IKTLPNETLIIHGREDQV--VPLSSSLRLGELIDRAQLHVFGRCGHWTQIEQTDRF 262
Query: 301 NRCLKQFL 308
NR + +F
Sbjct: 263 NRLVVEFF 270
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 70 HGFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTFQAQCL-------A 121
HGF E +W++Q+ AL + Y V D+ +G E+ P + C+
Sbjct: 61 HGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYG-----ESSAPPEIEEYCMEVLCKEMV 114
Query: 122 TGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAM 158
T L KLG+ + V +G +GGM+ + +A YP V+A+
Sbjct: 115 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 151
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 70 HGFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTFQAQCL-------A 121
HGF E +W++Q+ AL + Y V D+ +G E+ P + C+
Sbjct: 46 HGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYG-----ESSAPPEIEEYCMEVLCKEMV 99
Query: 122 TGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAM 158
T L KLG+ + V +G +GGM+ + +A YP V+A+
Sbjct: 100 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 136
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 70 HGFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTFQAQCL-------A 121
HGF E +W++Q+ AL + Y V D+ +G E+ P + C+
Sbjct: 265 HGFP-ESWYSWRYQIPALAQAGYRVLAMDMKGYG-----ESSAPPEIEEYCMEVLCKEMV 318
Query: 122 TGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAM 158
T L KLG+ + V +G +GGM+ + +A YP V+A+
Sbjct: 319 TFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVRAV 355
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 29/208 (13%)
Query: 116 QAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG------SILAMTD 169
A+ + + L +D+ LVG S GG + A YP+ + +++ G S+ A
Sbjct: 90 NARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFA--- 146
Query: 170 SINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKER 229
+ G+ +L S + LK +L V Y + S + ++ L+ + + +
Sbjct: 147 -----PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ----SLITEELLQGRWEAIQRQ 197
Query: 230 AELLEGLLISNKDPTVPNF---------PQRVHLLWGEDDQIFNVELAHNMKEQLGADHV 280
E L+ LIS + + + + + WG DD+ V L H +K D
Sbjct: 198 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRF--VPLDHGLKLLWNIDDA 255
Query: 281 TFQGIKKAGHLVHLERPCAYNRCLKQFL 308
K GH E +NR + FL
Sbjct: 256 RLHVFSKCGHWAQWEHADEFNRLVIDFL 283
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 29/208 (13%)
Query: 116 QAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG------SILAMTD 169
A+ + + L +D+ LVG + GG + A YP+ + +++ G S+ A
Sbjct: 90 NARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFA--- 146
Query: 170 SINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKER 229
+ G+ +L S + LK +L V Y + S + ++ L+ + + +
Sbjct: 147 -----PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ----SLITEELLQGRWEAIQRQ 197
Query: 230 AELLEGLLISNKDPTVPNF---------PQRVHLLWGEDDQIFNVELAHNMKEQLGADHV 280
E L+ LIS + + + + + WG DD+ V L H +K D
Sbjct: 198 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRF--VPLDHGLKLLWNIDDA 255
Query: 281 TFQGIKKAGHLVHLERPCAYNRCLKQFL 308
K GH E +NR + FL
Sbjct: 256 RLHVFSKCGHWAQWEHADEFNRLVIDFL 283
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 29/208 (13%)
Query: 116 QAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG------SILAMTD 169
A+ + + L +D+ LVG + GG + A YP+ + +++ G S+ A
Sbjct: 87 NARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFA--- 143
Query: 170 SINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKER 229
+ G+ +L S + LK +L V Y + S + ++ L+ + + +
Sbjct: 144 -----PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ----SLITEELLQGRWEAIQRQ 194
Query: 230 AELLEGLLISNKDPTVPNF---------PQRVHLLWGEDDQIFNVELAHNMKEQLGADHV 280
E L+ LIS + + + + + WG DD+ V L H +K D
Sbjct: 195 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRF--VPLDHGLKLLWNIDDA 252
Query: 281 TFQGIKKAGHLVHLERPCAYNRCLKQFL 308
K GH E +NR + FL
Sbjct: 253 RLHVFSKCGHWAQWEHADEFNRLVIDFL 280
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 29/208 (13%)
Query: 116 QAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG------SILAMTD 169
A+ + + L +D+ LVG S GG + A YP+ + +++ G S+ A
Sbjct: 90 NARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSMFA--- 146
Query: 170 SINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKER 229
+ G+ +L S + LK +L V Y + S + ++ L+ + + +
Sbjct: 147 -----PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ----SLITEELLQGRWEAIQRQ 197
Query: 230 AELLEGLLISNKDPTVPNF---------PQRVHLLWGEDDQIFNVELAHNMKEQLGADHV 280
E L+ LIS + + + + + WG DD+ V L H +K D
Sbjct: 198 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRF--VPLDHGLKLLWNIDDA 255
Query: 281 TFQGIKKAGHLVHLERPCAYNRCLKQFL 308
K G E +NR + FL
Sbjct: 256 RLHVFSKCGQWAQWEHADEFNRLVIDFL 283
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 70 HGFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTFQAQC--LATGLAK 126
HGF E +W++Q+ AL + + V D+ +G S + + C + T L K
Sbjct: 263 HGFP-ESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDK 321
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAM 158
LG+ + V +G + G++ + +A YP V+A+
Sbjct: 322 LGIPQAVFIGHDWAGVMVWNMALFYPERVRAV 353
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 29/208 (13%)
Query: 116 QAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG------SILAMTD 169
A+ + + L +D+ LVG + GG + A YP+ + +++ G S+ A
Sbjct: 90 NARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFA--- 146
Query: 170 SINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKER 229
+ G+ +L S + LK +L V Y + S + ++ L+ + + +
Sbjct: 147 -----PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ----SLITEELLQGRWEAIQRQ 197
Query: 230 AELLEGLLISNKDPTVPNF---------PQRVHLLWGEDDQIFNVELAHNMKEQLGADHV 280
E L+ LIS + + + + + WG DD+ V L H +K D
Sbjct: 198 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRF--VPLDHGLKLLWNIDDA 255
Query: 281 TFQGIKKAGHLVHLERPCAYNRCLKQFL 308
K G E +NR + FL
Sbjct: 256 RLHVFSKCGQWAQWEHADEFNRLVIDFL 283
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 12/226 (5%)
Query: 91 YSVYIPDLLFFG--GSITDEADRSPTFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVA 148
Y V + D +G S+ + RS A+ L + + +L + K L+G S GG S
Sbjct: 67 YRVILLDCPGWGKSDSVVNSGSRS-DLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFT 125
Query: 149 ELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKL 208
+P V +V+ G T + G+ ++L +++ LK ++ + +
Sbjct: 126 LKWPERVGKLVLMGGGTGGMSLF--TPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTS 183
Query: 209 WFPSCLYKDFLEVMFANRKERAELLEGLLISNKD-----PTVPNFPQRVHLLWGEDDQIF 263
L++ L M + R ++ L + K P + + ++WG +D+
Sbjct: 184 DLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFV 243
Query: 264 NVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYNRCLKQFLA 309
++ + + + + GH E A+N+ + FLA
Sbjct: 244 PMDAGLRLLSGIAGSELHI--FRDCGHWAQWEHADAFNQLVLNFLA 287
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 29/208 (13%)
Query: 116 QAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG------SILAMTD 169
A+ + + L +D+ LVG + GG + A YP+ + +++ G S+ A
Sbjct: 90 NARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFA--- 146
Query: 170 SINETNLNRLGVSSSSELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKER 229
+ G+ +L S + LK +L V Y + S + ++ L+ + + +
Sbjct: 147 -----PMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQ----SLITEELLQGRWEAIQRQ 197
Query: 230 AELLEGLLISNKDPTVPNF---------PQRVHLLWGEDDQIFNVELAHNMKEQLGADHV 280
E L+ LIS + + + + + WG DD+ V L H +K D
Sbjct: 198 PEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRF--VPLDHGLKLLWNIDDA 255
Query: 281 TFQGIKKAGHLVHLERPCAYNRCLKQFL 308
K G E +NR + FL
Sbjct: 256 RLHVFSKCGAWAQWEHADEFNRLVIDFL 283
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITD--EADRSPTFQ--AQCLATGLA 125
HG ++ G + G + KK+ V PDL G S TD + DRS + + A + +
Sbjct: 31 HGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQ 89
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
+LG+ V+ G+S GG + ++ YP + + ++++G+
Sbjct: 90 QLGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGT 126
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITD--EADRSPTFQ--AQCLATGLA 125
HG ++ G + G + KK+ V PDL G S TD + DRS + + A + +
Sbjct: 31 HGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQ 89
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
+LG+ V+ G+S GG + ++ YP + + ++++G+
Sbjct: 90 QLGIADAVVFGWSLGGHIGIEMIARYPEM-RGLMITGT 126
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 93/247 (37%), Gaps = 36/247 (14%)
Query: 71 GFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPTFQAQCLA--------- 121
G A W+ + L + + V PDL+ FG S E T+ ++
Sbjct: 39 GPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPE-----TYPGHIMSWVGMRVEQI 93
Query: 122 TGLAK-LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLG 180
GL G++K +VG S GG V+ ++ P + + GS+ A ++ L RL
Sbjct: 94 LGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNA-RPPELARLL 152
Query: 181 VSSSSELLLPNSVKGLKALLSVATYKKLWFPSC--LYKDFLEVMFANRKERAELLEGLLI 238
+ L P + L+ Y FP + K EV AN E + E +
Sbjct: 153 AFYADPRLTP-----YRELIHSFVYDPENFPGMEEIVKSRFEV--ANDPEVRRIQEVMFE 205
Query: 239 SNK---------DPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAG 289
S K T+ P V + G D+I ++ + + + L H + + G
Sbjct: 206 SMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLDTSLYLTKHL--KHAELVVLDRCG 263
Query: 290 HLVHLER 296
H LER
Sbjct: 264 HWAQLER 270
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITD--EADRSPTFQ--AQCLATGLA 125
HG ++ G + G + KK+ V PDL G S TD + DRS + + A + +
Sbjct: 31 HGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKS-TDAIDPDRSYSMEGYADAMTEVMQ 89
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
+LG+ V+ G+ GG + ++ YP + + ++++G+
Sbjct: 90 QLGIADAVVFGWGLGGHIGIEMIARYPEM-RGLMITGT 126
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 100/249 (40%), Gaps = 31/249 (12%)
Query: 79 TWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPTFQAQCLATGLAKLGVD-KCVLVGF 137
W+ + L + Y V D+L FG + + + + + + L + + D K +VG
Sbjct: 54 NWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 138 SYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINET-------NLNRLGVSSSSELLLP 190
S GG V+ L+ LV A+V+ GS + I+E + R G+ + L
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGS-AGLVVEIHEDLRPIINYDFTREGMVHLVKALTN 172
Query: 191 NSVKGLKALL-SVATYKKLWFPSCLYKDFLEVMFANRKERAELLEGLLISNKDPTVPNFP 249
+ K A++ S TY K ++ M R++ GL P F
Sbjct: 173 DGFKIDDAMINSRYTYAT---DEATRKAYVATMQWIREQ-----GGLFYD------PEFI 218
Query: 250 QRVH----LLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYNRCLK 305
++V ++ G+DD++ VE A+ + + D I GH +E P +
Sbjct: 219 RKVQVPTLVVQGKDDKVVPVETAYKFLDLI--DDSWGYIIPHCGHWAMIEHPEDFANATL 276
Query: 306 QFLASLHAD 314
FL SL D
Sbjct: 277 SFL-SLRVD 284
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 80 WQFQVGALTKKYSVYIPDLLFFGGS----ITDEADRSPTFQAQCLATGLAKLGVDKCVLV 135
W +G L + Y V +PDL FG S + D + S A A L LG++K +V
Sbjct: 45 WSKVIGPLAEHYDVIVPDLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVV 104
Query: 136 GFSYGGMVSFKVAELYPNLV 155
G + +V K Y + V
Sbjct: 105 GHDFAAIVLHKFIRKYSDRV 124
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPTFQAQCLAT---GLAK 126
HG+ V W+ L+ +++++ DL FG RS F A LA + +
Sbjct: 20 HGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG--------RSRGFGALSLADMAEAVLQ 70
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
DK + +G++ GG+V+ ++A +P VQA+V S
Sbjct: 71 QAPDKAIWLGWALGGLVASQIALTHPERVQALVTVAS 107
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPTFQAQCLAT---GLAK 126
HG+ V W+ L+ +++++ DL FG RS F A LA + +
Sbjct: 20 HGWGLNAEV-WRCIDEELSSHFTLHLVDLPGFG--------RSRGFGALSLADXAEAVLQ 70
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
DK + +G+S GG+V+ ++A +P V+A+V S
Sbjct: 71 QAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 74/183 (40%), Gaps = 11/183 (6%)
Query: 130 DKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSELLL 189
+K VL+G S+GGM E YP + V +++ + + ++++L
Sbjct: 79 EKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMML 138
Query: 190 PNSVK--------GLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERAELLEGLLISNK 241
+ G+ +L F +C +D LE+ + + + L + K
Sbjct: 139 DSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVED-LELAKMLTRPGSLFFQDLAKAKK 197
Query: 242 DPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYN 301
T + ++ +D+ F VE E +GAD V + IK+A H+ L +P
Sbjct: 198 FSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKV--KEIKEADHMGMLSQPREVX 255
Query: 302 RCL 304
+CL
Sbjct: 256 KCL 258
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDE---ADRSPTFQAQCLATGLAK 126
HG +G+ + + + Y V PDL G S E + S TF AQ + + +
Sbjct: 33 HGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQ-IDRVIQE 91
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRL 179
L +LVG S G M++ +A + P ++ +++ L +S E+ +N+L
Sbjct: 92 LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQL 144
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 124 LAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSS 183
L +LGV + ++G S GG ++ + A LYP V+ +V + + I + LGV
Sbjct: 108 LERLGVARASVIGHSXGGXLATRYALLYPRQVERLV-------LVNPIGLEDWKALGVPW 160
Query: 184 SS-----ELLLPNSVKGLKALLSVATYKKLWFP 211
S L S +G++ Y W P
Sbjct: 161 RSVDDWYRRDLQTSAEGIRQYQQATYYAGEWRP 193
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L+G SYGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETNLNRL 179
++ ++VSG + ++ ++ E +NRL
Sbjct: 122 LKGLIVSGGLSSVPLTVKE--MNRL 144
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L+G SYGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETNLNRL 179
++ ++VSG + ++ ++ E +NRL
Sbjct: 122 LKGLIVSGGLSSVPLTVKE--MNRL 144
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L+G SYGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETNLNRL 179
++ ++VSG + ++ ++ E +NRL
Sbjct: 122 LKGLIVSGGLSSVPLTVKE--MNRL 144
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L+G SYGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETNLNRL 179
++ ++VSG + ++ ++ E +NRL
Sbjct: 122 LKGLIVSGGLSSVPLTVKE--MNRL 144
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L+G SYGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLMGSSYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETNLNRL 179
++ ++VSG + ++ ++ E +NRL
Sbjct: 122 LKGLIVSGGLSSVPLTVKE--MNRL 144
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L G SYGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLXGSSYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETN 175
++ ++VSG + ++ ++ E N
Sbjct: 122 LKGLIVSGGLSSVPLTVKEXN 142
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 89 KKYSVYIPDLLFFGGSITDEADRSPTFQAQCL----ATGLAKLGVDKCVLVGFSYGGMVS 144
+ +VY+ +L F ++D P + + L T LA G K LVG S GG+ S
Sbjct: 40 RGATVYVANLSGF------QSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTS 93
Query: 145 FKVAELYPNLVQAMVVSGS 163
VA + P+LV ++ G+
Sbjct: 94 RYVAAVAPDLVASVTTIGT 112
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 89 KKYSVYIPDLLFFGGSITDEADRSPTFQAQCL----ATGLAKLGVDKCVLVGFSYGGMVS 144
+ +VY+ +L F ++D P + + L T LA G K LVG S GG+ S
Sbjct: 40 RGATVYVANLSGF------QSDDGPNGRGEQLLAYVKTVLAATGATKVNLVGHSQGGLTS 93
Query: 145 FKVAELYPNLVQAMVVSGS 163
VA + P+LV ++ G+
Sbjct: 94 RYVAAVAPDLVASVTTIGT 112
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 101 FGGSITDEADRSP------TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNL 154
FG ++E D+S +A+ L + L G +K L+G +YGG ++ A Y +
Sbjct: 64 FGCGRSEEPDQSKFTIDYGVEEAEALRSKL--FGNEKVFLMGSAYGGALALAYAVKYQDH 121
Query: 155 VQAMVVSGSILAMTDSINETNLNRL 179
++ ++VSG + ++ ++ E +NRL
Sbjct: 122 LKGLIVSGGLSSVPLTVKE--MNRL 144
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 107 DEADRSPTFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
++ + SP ++ LA L +L +VG S GG+ + ++A + P+LV +V+
Sbjct: 123 EDGNYSPQLNSETLAPVLRELAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVL 176
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 32/260 (12%)
Query: 70 HGFAAEGIVTW---QFQVGALTKKYSVYIPDLLFFGGSITD-EADRSPTFQAQCLATGLA 125
HG G +W + L + + V D +G S E + + A L
Sbjct: 63 HG-GGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFD 121
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG----SILAMTDSINETNLNRLGV 181
+LG+ + LVG S GG + + A YP +V+ G SI E GV
Sbjct: 122 QLGLGRVPLVGNSLGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTE------GV 175
Query: 182 SSSSELLLPNSVKGLKALLSVATY-KKLWFPSCLYKDFL-----EVMFANRK-----ERA 230
S+ + + + L+A L V Y K L P + + F E + A R A
Sbjct: 176 KRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGA 235
Query: 231 ELLEGLLISNKDPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGH 290
+ G++ V Q V L+WG +D++ ++ A + + + G + GH
Sbjct: 236 DFEAGMMWRE----VYRLRQPVLLIWGREDRVNPLDGALVALKTIPRAQLHVFG--QCGH 289
Query: 291 LVHLERPCAYNRCLKQFLAS 310
V +E+ +N+ +FL
Sbjct: 290 WVQVEKFDEFNKLTIEFLGG 309
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 71 GFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTF---QAQCLATGLAK 126
G G + Q+ L KK ++V D +G S + D F A+ +
Sbjct: 31 GMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKA 90
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSE 186
L K L+G+S GG+ + A YP+ + MV+ G+ +TD + VS SE
Sbjct: 91 LKFKKVSLLGWSNGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSE 150
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 71 GFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTF---QAQCLATGLAK 126
G G + Q+ L KK ++V D +G S + D F A+ +
Sbjct: 31 GMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKA 90
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSE 186
L K L+G+S GG+ + A YP+ + MV+ G+ +TD + VS SE
Sbjct: 91 LKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSE 150
>pdb|3BDI|A Chain A, Crystal Structure Of Predicted Cib-Like Hydrolase
(Np_393672.1) From Thermoplasma Acidophilum At 1.45 A
Resolution
Length = 207
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 91 YSVYIPDLLFFGGSITDEA---DRSP-TFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFK 146
Y+VY PD FG S + E DR A+ + L GV + V+ G S GG
Sbjct: 57 YNVYAPDYPGFGRSASSEKYGIDRGDLKHAAEFIRDYLKANGVARSVIXGASXGGGXVIX 116
Query: 147 VAELYPNLVQAMV 159
YP++V ++
Sbjct: 117 TTLQYPDIVDGII 129
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 250 QRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYNRCLKQFLA 309
Q+ L+WG D + + L+ + + ++ +GH V++E+P + R FL
Sbjct: 148 QKTLLVWGSKDHVVPIALSKEYASIISGSRLEI--VEGSGHPVYIEKPEEFVRITVDFLR 205
Query: 310 SL 311
+L
Sbjct: 206 NL 207
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPT-----FQAQCLATGL 124
HGF + V W L +++ V + DL +G S E+D T A+ L +
Sbjct: 40 HGFP-QTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAM 98
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
+LG L G + G VS+++A P + + V
Sbjct: 99 EQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAV 134
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 10/234 (4%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITD--EADRSPTFQAQC--LATGLA 125
HGF + V W+ V L Y V + D + G + D + DR + L L
Sbjct: 26 HGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLIAILE 84
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMV-VSGSILAMTDSINETNLNRLGVSSS 184
L ++ C+ VG S M+ + P+L +V +S S + D + + ++
Sbjct: 85 DLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQL 144
Query: 185 SELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERA-ELLEGLLISNKDP 243
E + N +A + S ++F +F R + A + + + S+
Sbjct: 145 FEAIRSNYKAWCLGFAPLAVGGDM--DSIAVQEFSRTLFNMRPDIALSVGQTIFQSDMRQ 202
Query: 244 TVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERP 297
+P H+L D V ++ + LG + V + I GHL L P
Sbjct: 203 ILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVV-EVIPSDGHLPQLSSP 255
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 10/234 (4%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITD--EADRSPTFQAQC--LATGLA 125
HGF + V W+ V L Y V + D + G + D + DR + L L
Sbjct: 24 HGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLIAILE 82
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMV-VSGSILAMTDSINETNLNRLGVSSS 184
L ++ C+ VG S M+ + P+L +V +S S + D + + ++
Sbjct: 83 DLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQL 142
Query: 185 SELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERA-ELLEGLLISNKDP 243
E + N +A + S ++F +F R + A + + + S+
Sbjct: 143 FEAIRSNYKAWCLGFAPLAVGGDM--DSIAVQEFSRTLFNMRPDIALSVGQTIFQSDMRQ 200
Query: 244 TVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERP 297
+P H+L D V ++ + LG + V + I GHL L P
Sbjct: 201 ILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVV-EVIPSDGHLPQLSSP 253
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPT-----FQAQCLATGL 124
HGF + V W L +++ V + DL +G S E+D T A+ L +
Sbjct: 40 HGFP-QTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAM 98
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
+LG L G G VS+++A P + + V
Sbjct: 99 EQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAV 134
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPT-----FQAQCLATGL 124
HGF + V W L +++ V + DL +G S E+D T A+ L +
Sbjct: 40 HGFP-QTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAM 98
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
+LG L G G VS+++A P + + V
Sbjct: 99 EQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAV 134
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 32/260 (12%)
Query: 70 HGFAAEGIVTW---QFQVGALTKKYSVYIPDLLFFGGSITD-EADRSPTFQAQCLATGLA 125
HG G +W + L + + V D +G S E + + A L
Sbjct: 43 HG-GGPGAASWTNFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYAAMALKGLFD 101
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG----SILAMTDSINETNLNRLGV 181
+LG+ + LVG + GG + + A YP +V+ G SI E GV
Sbjct: 102 QLGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTE------GV 155
Query: 182 SSSSELLLPNSVKGLKALLSVATY-KKLWFPSCLYKDFL-----EVMFANRK-----ERA 230
S+ + + + L+A L V Y K L P + + F E + A R A
Sbjct: 156 KRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGA 215
Query: 231 ELLEGLLISNKDPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGH 290
+ G++ V Q V L+WG +D++ ++ A + + + G + GH
Sbjct: 216 DFEAGMMWRE----VYRLRQPVLLIWGREDRVNPLDGALVALKTIPRAQLHVFG--QCGH 269
Query: 291 LVHLERPCAYNRCLKQFLAS 310
V +E+ +N+ +FL
Sbjct: 270 WVQVEKFDEFNKLTIEFLGG 289
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGS-----ITDEADRSPTFQAQCLATGL 124
HGF + + W L +Y+V DL +GGS D A+ S A +
Sbjct: 32 HGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASDQRELM 90
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
LG ++ LVG + GG ++A +P+ V ++ V
Sbjct: 91 RTLGFERFHLVGHARGGRTGHRMALDHPDSVLSLAV 126
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 10/234 (4%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITD--EADRSPTFQAQC--LATGLA 125
HGF + V W+ V L Y V + D + G + D + DR + L L
Sbjct: 42 HGFGTDQSV-WKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNLEGYSFDLIAILE 100
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMV-VSGSILAMTDSINETNLNRLGVSSS 184
L ++ C+ VG S M+ + P+L +V +S S + D + + ++
Sbjct: 101 DLKIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQL 160
Query: 185 SELLLPNSVKGLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERA-ELLEGLLISNKDP 243
E + N +A + S ++F +F R + A + + + S+
Sbjct: 161 FEAIRSNYKAWCLGFAPLAVGGDM--DSIAVQEFSRTLFNMRPDIALSVGQTIFQSDMRQ 218
Query: 244 TVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERP 297
+P H+L D V ++ + LG + V + I GHL L P
Sbjct: 219 ILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVV-EVIPSDGHLPQLSSP 271
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 130 DKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSELLL 189
+K VL+G S+GGM E YP + V +++ + + ++++L
Sbjct: 73 EKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMML 132
Query: 190 PNSVK--------GLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERAELLEGLLISNK 241
+ G+ +L F +C +D LE+ + + + L + K
Sbjct: 133 DSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVED-LELAKMLTRPGSLFFQDLAKAKK 191
Query: 242 DPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYN 301
T + ++ +D+ F VE E +GAD V + IK+A + L +P
Sbjct: 192 FSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKV--KEIKEADAMGMLSQPREVC 249
Query: 302 RCL 304
+CL
Sbjct: 250 KCL 252
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEADRSPT-----FQAQCLATGL 124
HGF + V W L +++ V + DL +G S E+D T A+ L +
Sbjct: 40 HGFP-QTHVMWHRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRAMAKQLIEAM 98
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
+LG L G G VS+++A P + + V
Sbjct: 99 EQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAV 134
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 93 VYIPDLLFFGGS--ITDEADRSPTFQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAEL 150
V PDL FG S TD+A + F + L L L +++ LV +GG++ +
Sbjct: 76 VVAPDLFGFGRSDKPTDDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWGGILGLTLPVD 135
Query: 151 YPNLVQAMVVSGSILAM 167
P LV ++V + LA+
Sbjct: 136 RPQLVDRLIVMNTALAV 152
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 11/176 (6%)
Query: 130 DKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSELLL 189
+K VL+G S+GGM E YP + V +++ + + ++++L
Sbjct: 79 EKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMML 138
Query: 190 PNSVK--------GLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERAELLEGLLISNK 241
+ G+ +L F +C +D LE+ + + + L + K
Sbjct: 139 DSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVED-LELAKMLTRPGSLFFQDLAKAKK 197
Query: 242 DPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERP 297
T + ++ +D+ F VE E +GAD V + IK+A H+ L +P
Sbjct: 198 FSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKV--KEIKEADHMGMLSQP 251
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 71 GFAAEGIVTWQFQVGALTKK-YSVYIPDLLFFGGSITDEADRSPTF---QAQCLATGLAK 126
G G + Q+ L KK ++V D +G S + D F A+ +
Sbjct: 31 GMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKA 90
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSE 186
L K L+G++ GG+ + A YP+ + MV+ G+ +TD + VS SE
Sbjct: 91 LKFKKVSLLGWADGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSE 150
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGS-----ITDEADRSPTFQAQCLATGL 124
HGF + + W L +Y+V DL +GGS D A+ S A +
Sbjct: 32 HGFP-QNLHMWARVAPLLANEYTVVCADLRGYGGSSKPVGAPDHANYSFRAMASDQRELM 90
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
LG ++ LVG GG ++A +P+ V ++ V
Sbjct: 91 RTLGFERFHLVGHDRGGRTGHRMALDHPDSVLSLAV 126
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 11/183 (6%)
Query: 130 DKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSELLL 189
+K VL+G S+GGM E YP + V +++ + + ++++L
Sbjct: 79 EKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMML 138
Query: 190 PNSVK--------GLKALLSVATYKKLWFPSCLYKDFLEVMFANRKERAELLEGLLISNK 241
+ G+ +L F +C +D LE+ + + + L + K
Sbjct: 139 DSQFSTYGNPENPGMSMILGPQFMALKMFQNCSVED-LELAKMLTRPGSLFFQDLAKAKK 197
Query: 242 DPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYN 301
T + ++ +D+ F VE E +GAD V + IK+A + L +P
Sbjct: 198 FSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGADKV--KEIKEADAMGMLSQPREVC 255
Query: 302 RCL 304
+CL
Sbjct: 256 KCL 258
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 239 SNKDPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPC 298
+N+ P N V ++ DD + L + + L + + I AGHL ERP
Sbjct: 221 TNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADAL--PNGRYLQIPDAGHLGFFERPE 278
Query: 299 AYNRCLKQFLASLHA 313
A N + +F AS+ A
Sbjct: 279 AVNTAMLKFFASVKA 293
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFG-----GSITDEADRSPTFQAQCLATGL 124
HG+ + V W L ++V DL +G S+ + S AQ +
Sbjct: 32 HGYP-QTHVMWHKIAPLLANNFTVVATDLRGYGDSSRPASVPHHINYSKRVMAQDQVEVM 90
Query: 125 AKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
+KLG ++ +VG G V+ ++A +P+ V+ + +
Sbjct: 91 SKLGYEQFYVVGHDRGARVAHRLALDHPHRVKKLAL 126
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 93 VYIPDLLFFGGSITDEADRSPTFQAQCL----ATGLAKLGVDKCVLVGFSYGGMVSFKVA 148
VY+ +L F ++D P + + L LA G K L+G S GG+ S VA
Sbjct: 44 VYVANLSGF------QSDDGPNGRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVA 97
Query: 149 ELYPNLVQAMVVSGS 163
+ P LV ++ G+
Sbjct: 98 AVAPQLVASVTTIGT 112
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 93 VYIPDLLFFGGSITDEADRSPTFQAQCL----ATGLAKLGVDKCVLVGFSYGGMVSFKVA 148
VY+ +L F ++D P + + L LA G K L+G S GG+ S VA
Sbjct: 43 VYVANLSGF------QSDDGPNGRGEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVA 96
Query: 149 ELYPNLVQAMVVSGS 163
+ P LV ++ G+
Sbjct: 97 AVAPQLVASVTTIGT 111
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 25/252 (9%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEAD--RSPTFQAQC--LATGLA 125
HGF + W + T+ Y V + DL+ G D D R T L +
Sbjct: 26 HGFGTDQ-SAWHLILPYFTQNYRVVLYDLVCAGSVNPDYFDFNRYTTLDPYVDDLLNIVD 84
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSG-SILAMTDS-----INETNLNRL 179
LG+ C VG S M+ + P L +++ G S + D E + +
Sbjct: 85 SLGIQNCAYVGHSVSAMIGIIASIRRPELFSKLILIGFSPRFLNDEDYHGGFEEGEIEK- 143
Query: 180 GVSSSSELLLPNSVKGLKALLSVATYKKLW--FPSCLYKDFLEV-MFANRKERAELLEGL 236
V S+ E V G L A F L+ ++ +F +R L G+
Sbjct: 144 -VFSAMEANYEAWVHGFAPLAVGADVPAAVREFSRTLFNMRPDISLFVSRTVFNSDLRGV 202
Query: 237 LISNKDPTVPNFPQRVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLER 296
L + PT ++ D +A ++ LG D T + +K GHL L
Sbjct: 203 LGLVRVPTC--------VIQTAKDVSVPASVAEYLRSHLGGD-TTVETLKTEGHLPQLSA 253
Query: 297 PCAYNRCLKQFL 308
P + L++ L
Sbjct: 254 PAQLAQFLRRAL 265
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 124 LAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
LA G K L+G S GG+ S VA + P LV ++ G+
Sbjct: 73 LAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 33/242 (13%)
Query: 80 WQFQVGALTKKYSVYIPDLL-FFGGSITDEADRSPTFQAQCLATGLAKLGVDKCVLVGFS 138
W + + KY Y D++ SI + + T A L LG++K +G S
Sbjct: 83 WYPNIADWSSKYRTYAVDIIGDKNKSIPENVSGTRTDYANWLLDVFDNLGIEKSHXIGLS 142
Query: 139 YGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSSSSELLLPNSVKGLKA 198
GG+ + P V++ + ++ LG+++S+ G++
Sbjct: 143 LGGLHTXNFLLRXPERVKSAAILSPAETFLPFHHDFYKYALGLTASN---------GVET 193
Query: 199 LLSVATYKKLWFPSCLYKDFLEVMFANRKERAELLEGLLISNKDPTVPNFPQ-------- 250
L+ + K F + R N +P FP
Sbjct: 194 FLNWXXNDQNVLHPIFVKQFKAGVXWQDGSR----------NPNPNADGFPYVFTDEELR 243
Query: 251 ----RVHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYNRCLKQ 306
+ LL GE + I++ A + D + + IK AGH++ E+P N + +
Sbjct: 244 SARVPILLLLGEHEVIYDPHSALHRASSFVPD-IEAEVIKNAGHVLSXEQPTYVNERVXR 302
Query: 307 FL 308
F
Sbjct: 303 FF 304
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 133 VLVGFSYGGMVSFKVAELYPNLVQ-AMVVSGSILAMTDSINETNLNRLGVSSSSELLLPN 191
+ G SYGGM+S + YP+LV A+ S +LA+ + ++N V++ E P
Sbjct: 134 IAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVA-GLGDSNQFFRDVTADFEGQSPK 192
Query: 192 SVKGLK 197
+G++
Sbjct: 193 CTQGVR 198
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEAD--RSPTFQAQC--LATGLA 125
HGF + W + LT+ + V + DL+ G D D R A L L
Sbjct: 24 HGFGTDQ-SAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILD 82
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
L + +C VG S M+ + P+L +V+ G+
Sbjct: 83 ALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 120
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEAD--RSPTFQAQC--LATGLA 125
HGF + W + LT+ + V + DL+ G D D R A L L
Sbjct: 26 HGFGTDQ-SAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILD 84
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
L + +C VG S M+ + P+L +V+ G+
Sbjct: 85 ALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGA 122
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
V LVG S GG+V+ +A LYP+L++ +V+
Sbjct: 118 VRNIYLVGHSQGGVVASMLAGLYPDLIKKVVL 149
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 127 LGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSIL 165
LGVD+ + G S+G ++ A+ +P V +V+ G L
Sbjct: 99 LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 70 HGFAAEGIVTWQFQVGALTKKYSVYIPDLLFFGGSITDEAD--RSPTFQAQC--LATGLA 125
HGF + W + + Y V + DL+ G D D R T L L
Sbjct: 27 HGFGTDQ-SAWNRILPFFLRDYRVVLYDLVCAGSVNPDFFDFRRYTTLDPYVDDLLHILD 85
Query: 126 KLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGS 163
LG+D C VG S M+ + P L +++ G+
Sbjct: 86 ALGIDCCAYVGHSVSAMIGILASIRRPELFSKLILIGA 123
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 76 GIVTWQFQVGALTKKYS-----VYIPDLLFFGGS--ITDEADRSPTFQAQCLATGLAKLG 128
G TW + + ++ V PD FG S DE D + F L + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINE 173
+ LV +GG + + P+ + +++ + L MTD + +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXL-MTDPVTQ 158
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 76 GIVTWQFQVGALTKKYS-----VYIPDLLFFGGS--ITDEADRSPTFQAQCLATGLAKLG 128
G TW + + ++ V PD FG S DE D + F L + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINE 173
+ LV +GG + + P+ + +++ + L MTD + +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL-MTDPVTQ 158
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 76 GIVTWQFQVGALTKKYS-----VYIPDLLFFGGS--ITDEADRSPTFQAQCLATGLAKLG 128
G TW + + ++ V PD FG S DE D + F L + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINE 173
+ LV +GG + + P+ + +++ + L MTD + +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL-MTDPVTQ 158
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 76 GIVTWQFQVGALTKKYS-----VYIPDLLFFGGS--ITDEADRSPTFQAQCLATGLAKLG 128
G TW + + ++ V PD FG S DE D + F L + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINE 173
+ LV +GG + + P+ + +++ + L MTD + +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL-MTDPVTQ 158
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)
Query: 76 GIVTWQFQVGALTKKYS-----VYIPDLLFFGGS--ITDEADRSPTFQAQCLATGLAKLG 128
G TW + + ++ V PD FG S DE D + F L + +L
Sbjct: 55 GEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLD 114
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINE 173
+ LV +GG + + P+ + +++ + L MTD + +
Sbjct: 115 LRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL-MTDPVTQ 158
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 133 VLVGFSYGGMVSFKVAELYPNLVQ-AMVVSGSILAMTDSINETNLNRLGVSSSSELLLPN 191
+ G SYGG +S + YP+LV A+ S +LA+ + ++N V++ E P
Sbjct: 131 IAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVA-GLGDSNQFFRDVTADFEGQSPK 189
Query: 192 SVKGLK 197
+G++
Sbjct: 190 CTQGVR 195
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
V LVG + GG+V+ +A LYP+L++ +V+
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVL 149
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 129 VDKCVLVGFSYGGMVSFKVAELYPNLVQAMVV 160
V LVG + GG+V+ +A LYP+L++ +V+
Sbjct: 118 VRNIYLVGHAQGGVVASMLAGLYPDLIKKVVL 149
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 130 DKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNR 178
++ +LVGFS+GG+ A+++P ++ +V + L T + L++
Sbjct: 73 EEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDK 121
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 252 VHLLWGEDDQIFNVELAHNMKEQLGADHVTFQGIKKAGHLVHLERPCAYNRCLKQFLASL 311
+H + GE D F + E G +++ + +AGH VH E+P A+ + ++ + S+
Sbjct: 211 IHYVCGEQDSKFQ-----QLAESSG---LSYSQVAQAGHNVHHEQPQAFAKIVQAXIHSI 262
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 115 FQAQCLATGLAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAM 167
F A C A LG+++ ++G S+GGM+ ++A P+ + ++ + S +M
Sbjct: 116 FHAVCTA-----LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASM 163
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 143 VSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSS---SSELLLPNSVKGLKAL 199
V F++ E VQ M +GS T + + + L +S S +LLP+ + GL+ L
Sbjct: 197 VPFRITEQESKPVQMMYQAGSFKVATVAAEKMKILELPYASGELSMFVLLPDDISGLEQL 256
Query: 200 LSVATYKKL--WFPSCLYKD 217
+ + +KL W S + +D
Sbjct: 257 ETTISIEKLSEWTSSNMMED 276
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 101 FGGSITDEADRSPTFQAQCLATGLAKLGVDKCVLVGFSYG 140
F G + DRS + A+ +A L K G+ + VLV SY
Sbjct: 271 FSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYA 310
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 101 FGGSITDEADRSPTFQAQCLATGLAKLGVDKCVLVGFSYG 140
F G + DRS + A+ +A L K G+ + VLV SY
Sbjct: 283 FSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYA 322
>pdb|1EX9|A Chain A, Crystal Structure Of The Pseudomonas Aeruginosa Lipase
Complexed With
Rc-(Rp,Sp)-1,2-Dioctylcarbamoyl-Glycero-3-O-
Octylphosphonate
Length = 285
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 124 LAKLGVDKCVLVGFSYGGMVSFKVAELYPNLVQAMVVSGSILAMTDSINETNLNRLGVSS 183
+A G K L+G S+GG VA + P+L+ + G+ +D+ + L ++ S
Sbjct: 68 VALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPHKGSDTADF--LRQIPPGS 125
Query: 184 SSELLLPNSVKGLKALLS 201
+ E +L V L AL+S
Sbjct: 126 AGEAVLSGLVNSLGALIS 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,277,666
Number of Sequences: 62578
Number of extensions: 302884
Number of successful extensions: 823
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 95
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)