BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020917
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 22/195 (11%)
Query: 120 LHTEMAKKNLFVKRGIVADT-NAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHG- 177
++T +A+ L ++G A T N+ QS R +SA S F P P
Sbjct: 328 INTNVARNYLSSEKGYSAHTQNSSAQSPHPRV--------FSANSAFSTTSPPPLTPSTS 379
Query: 178 ----YMAPPPPPYDPYGGYGVP-PVQMPAPAPVPAPSSYVPVQNTKD-NPPCNTLFIGNL 231
+ A P P+ Y + PA P + N D NPPCNT+++GNL
Sbjct: 380 RDYPFSASTISPSTPFSAYSSSHGIHQRIPASTPTNT------NPADQNPPCNTIYVGNL 433
Query: 232 GESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291
S +EEEL+ LFS Q G+K++ + +CF+EFE++ A NLQG + SS
Sbjct: 434 PPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGVCLSSSIK 493
Query: 292 VGMRIQYSKNPFGKR 306
G+R+ +SKNP G R
Sbjct: 494 GGIRLSFSKNPLGVR 508
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
TI++ LP E EL+ L GY+ KG PM F F A+ A LQ
Sbjct: 425 CNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQ 484
Query: 109 EMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGG--DY------THTGYS 160
+ + K + +K L V+ + N + L +G +Y HTG
Sbjct: 485 GVCLSSSIKGGIRLSFSKNPLGVRSSSSSHNNHNGNVRNLHSGSMNNYNTDSLLNHTG-- 542
Query: 161 APSPFHAPPAPVWG 174
+ HA P+ WG
Sbjct: 543 GHNEVHASPS--WG 554
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 12/98 (12%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT--------VCFIEFEDV 271
NPPCNTL++GNL E+ELR LFS Q GF+++ R + T +CF+EF+DV
Sbjct: 534 NPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLS-FRNKNTTSNGHSHGPMCFVEFDDV 592
Query: 272 NSASSVHHNLQGAVIPS---SGSVGMRIQYSKNPFGKR 306
+ A+ L G +P S G+R+ +SKNP G R
Sbjct: 593 SFATRALAELYGRQLPRSTVSSKGGIRLSFSKNPLGVR 630
>sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mde7 PE=4 SV=1
Length = 761
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%)
Query: 217 TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASS 276
T N PCNT+++GNL E++LR FS + G++++ + +CF+EFE+V A+
Sbjct: 595 TDHNSPCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAK 654
Query: 277 VHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306
+QGA + G+R+ YSKNP G R
Sbjct: 655 AMEKMQGAALDDKIKGGIRLSYSKNPLGVR 684
Score = 38.1 bits (87), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 45 AHDEVRTIFIT---GLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAV 101
++D++ + I GLPDD +REL + + GY+ S++ + F A A+
Sbjct: 212 SNDDLESSIIQIVGGLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVYFRNAIAAL 271
Query: 102 AAKDAL 107
AK+ L
Sbjct: 272 KAKNML 277
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADT 139
K+AL + FD E L E AK N + + + T
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%)
Query: 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAA 103
+ +EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AA
Sbjct: 18 LQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAA 77
Query: 104 KDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADT 139
K+AL + FD E L E AK N + + + T
Sbjct: 78 KNALNGIRFDPEIPQTLRLEFAKANTKMAKNKLVGT 113
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+
Sbjct: 21 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSRQPVGFVIFDSRAGAEAAKN 80
Query: 106 ALQEMIFDAETKSVLHTEMAKKNL-FVKRGIVADTN 140
AL + FD E L E AK N K ++A N
Sbjct: 81 ALNGIRFDPENPQTLRLEFAKANTKMAKSKLIATPN 116
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 17/103 (16%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT-----------VCFIEF 268
NPPCNTL++GNL E+ELR LFS Q GF+++ R + ++ +CF+EF
Sbjct: 529 NPPCNTLYVGNLPPDATEQELRQLFSNQQGFRRLS-FRNKMNSHGHGNGHGHGPICFVEF 587
Query: 269 EDVNSASSVHHNLQGAVIPS-----SGSVGMRIQYSKNPFGKR 306
EDV+ A+ L G+ +P + G+R+ +SKNP G R
Sbjct: 588 EDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPLGVR 630
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105
+EVRT+F++GLP D+K REL L R GYE S + +P+GF +F + A AAK+
Sbjct: 27 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTARQPVGFVIFDSRAGAEAAKN 86
Query: 106 ALQEMIFDAETKSVLHTEMAKKN 128
AL + FD E L E AK N
Sbjct: 87 ALNGIRFDPENPQTLRLEFAKAN 109
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%)
Query: 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105
+EVRT+F++GLP D+K REL L R GYE S + ++P+GF F + A AAK+
Sbjct: 18 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDSRAGAEAAKN 77
Query: 106 ALQEMIFDAETKSVLHTEMAKKN 128
AL + FD E L E AK N
Sbjct: 78 ALNGIRFDPENPQTLRLEFAKAN 100
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 46/80 (57%)
Query: 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
VRT+F++GLP D+K REL L R GYE S + ++P+GF F A AAK+AL
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDNRAGAEAAKNALN 78
Query: 109 EMIFDAETKSVLHTEMAKKN 128
+ FD E L E AK N
Sbjct: 79 GIRFDPENPQTLRLEFAKAN 98
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 120/288 (41%), Gaps = 38/288 (13%)
Query: 44 IAHDEVR---TIFITGLPDDVKERELQNLL--------RWLPGYEASQVNYKGEKPMGFA 92
++ EVR TI+I L + +K+ EL+ L + L + + +G+ F
Sbjct: 1 MSIQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQ---AFV 57
Query: 93 LFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGG 152
+F A A ++Q F + + +++ + +G + + Q KR
Sbjct: 58 IFKETSSATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVP 117
Query: 153 DYTHTGYSAPSPFHAP------------PAPVWGPHGYMAPPPPPYDPYGGY----GVPP 196
+ + P P P P PY + G G+ P
Sbjct: 118 EVQGVKNAMPGAALLPGVPGQMAAMQDMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAP 177
Query: 197 VQMPAPAPVP----APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ 252
QMP P +P P P+Q +NPP + LF+ NL E NE L LF+ PGFK+
Sbjct: 178 GQMP-PGGMPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236
Query: 253 MKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300
++++ RH + F+EF++ A + +LQG I S S M+I ++K
Sbjct: 237 VRLV-PGRHDIAFVEFDNEVQAGAARESLQGFKITQSNS--MKISFAK 281
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEM 110
+F+T LP++ E L L PG++ ++ G + F F A AA+++LQ
Sbjct: 209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARESLQG- 266
Query: 111 IFDAETKSVLHTEMAKK 127
F + + AKK
Sbjct: 267 -FKITQSNSMKISFAKK 282
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQV-----NYKGEKPMGFALFSTAQLAV 101
+EVRT+F++GLP D K REL L R GYE S + N K P+GF F T A
Sbjct: 448 EEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAE 507
Query: 102 AAKDALQEMIFDAETKSVLHTEMAKKNLFVKR 133
AAK LQ + FD + + E AK N V +
Sbjct: 508 AAKQDLQGVRFDPDMPQTIRLEFAKSNTKVSK 539
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ 258
N PC+TLF+ NLG+ ++E EL+ +FS+ +K+L Q
Sbjct: 700 NAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKLLHQ 738
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 208 PSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIE 267
P P Q +NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+E
Sbjct: 197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVE 255
Query: 268 FEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301
F++ A + LQG I + + M+I ++K
Sbjct: 256 FDNEVQAGAARDALQGFKITQNNA--MKISFAKK 287
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM 253
+PP MP +P P Q +NPP + LF+ NL E NE L LF+ PGFK++
Sbjct: 180 IPPGAMPPQQLMPG--QMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237
Query: 254 KVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300
+++ RH + F+EF++ A + LQG I + + M+I ++K
Sbjct: 238 RLV-PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNA--MKISFAK 281
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 208 PSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIE 267
P P Q +NPP + LF+ NL E NE L LF+ PGFK+++++ RH + F+E
Sbjct: 192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV-PGRHDIAFVE 250
Query: 268 FEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300
F++ A + LQG I + + M+I ++K
Sbjct: 251 FDNEVQAGAARDALQGFKITQNNA--MKISFAK 281
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM 253
+PP MP +P P Q +NPP + LF+ NL E NE L LF+ PGFK++
Sbjct: 180 IPPGAMPPQQLMPG--QMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237
Query: 254 KVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300
+++ RH + F+EF++ A + LQG I + + M+I ++K
Sbjct: 238 RLV-PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNA--MKISFAK 281
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQYSK 300
LQG I S + M+I Y+K
Sbjct: 205 DALQGFKITPSHA--MKITYAK 224
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
+F+ LP++ E L L PG++ ++ G + F F A AA+DALQ
Sbjct: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQ 208
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
D PP LF+ NL E NE L LF+ PGFK+++++ RH + F+EFE+ A +
Sbjct: 146 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV-PGRHDIAFVEFENDGQAGAAR 204
Query: 279 HNLQGAVIPSSGSVGMRIQYSK 300
LQG I S + M+I Y+K
Sbjct: 205 DALQGFKITPSHA--MKITYAK 224
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
+F+ LP++ E L L PG++ ++ G + F F A AA+DALQ
Sbjct: 153 LFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQ 208
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278
+ PP LF+ NL E NE L LF+ PGFK+++ L RH + F+EF +++
Sbjct: 137 EQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVR-LVPNRHDIAFVEFTTELQSNAAK 195
Query: 279 HNLQGAVIPSSGSVGMRIQYSK 300
LQG I + + M+I ++K
Sbjct: 196 EALQGFKITPTHA--MKITFAK 215
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQ 108
+ +F+T LP++ E L L PG++ ++ + F F+T + AAK+ALQ
Sbjct: 142 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVEFTTELQSNAAKEALQ 199
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 212 VPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV 271
+P +N K+N L++ NL SI+ EEL G+FS+ ++++ E V +IEF DV
Sbjct: 283 IPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQV-YIEFFDV 341
Query: 272 NSASSVHHNLQGAVI 286
A L G +
Sbjct: 342 RKAKVALQGLNGLEV 356
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL N L+ LF PGFK+++++ + + + F+E+ED +S
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMI-EAKPGIAFVEYEDDVQSSMAMQA 210
Query: 281 LQGAVI 286
LQG I
Sbjct: 211 LQGFKI 216
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM 253
V PV +P+ P + P ++ + C T+ + NL +++ EEEL+ FS +
Sbjct: 210 VYPVTVPSAVAAPVQAYVAPPES---DVTCTTISVANLDQNVTEEELKKAFSQLGEVIYV 266
Query: 254 KVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302
K+ + + +++F+ SA +QG VI G +RI +SKNP
Sbjct: 267 KIPATKGY--GYVQFKTRPSAEEAVQRMQGQVI---GQQAVRISWSKNP 310
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVC 264
VPAPS Q T PP N LFI NL L+ LF PGFK+++++ + +
Sbjct: 141 VPAPSFQPSGQETM--PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMI-DAKPGIA 197
Query: 265 FIEFEDVNSASSVHHNLQGAVI 286
F+E+ED AS LQG I
Sbjct: 198 FVEYEDDVQASIAMQPLQGFKI 219
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 218 KDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSV 277
+D+PP TLF+ NL + + L LFS GFK++ ++ + + + FIEFED +
Sbjct: 161 RDDPPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMV-ESKKGIAFIEFEDEIKSGFA 219
Query: 278 HHNLQ 282
NLQ
Sbjct: 220 MTNLQ 224
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 219 DNPPCNTLFIGNLGESINE----EELRGLFSAQ------PGFKQMKVLRQERHTVCFIEF 268
D PP TL++ NL E I++ E+L LFS G K +K+ Q FI F
Sbjct: 7 DIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQ-----AFIVF 61
Query: 269 EDVNSASSVHHNLQGAVIPSSGSVGMRIQY--SKNPFGKRKDGT 310
+D+ SAS+ + G M+IQY SK+ + DGT
Sbjct: 62 KDITSASNALREMNGFNFLDR---PMKIQYCKSKSDAVSKLDGT 102
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 43/261 (16%)
Query: 51 TIFITGLPDDVKERELQNLLR--------WLPGYEASQVNYKGEKPMGFALFSTAQLAVA 102
TI+I L + +K EL+ LR L + +KG+ + +F A
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQ---AWVVFEDVASATE 80
Query: 103 AKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAP 162
A ++Q+ F + + + + K I+A + + R D
Sbjct: 81 ALKSMQDFPFHNKPMRIQYAK-------TKSDIIAKADGTFVPRERRKRNDEKPEKKQKR 133
Query: 163 SPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV-QMP--APAPVPAPSSYVPVQNTKD 219
H G + Y P G YG PP+ Q+P V P VP
Sbjct: 134 EQHHDVSQVGLGVNAY---------P-GVYGAPPLSQLPFAGAQKVMMPEIIVP------ 177
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279
N LF+ NL L+ LF PGFK+++++ + + + F+E+ D A++ +
Sbjct: 178 ---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV-EAKPGIAFVEYGDEGQATAAMN 233
Query: 280 NLQGAVIPSSGSVGMRIQYSK 300
+LQG I M I Y+K
Sbjct: 234 HLQGFKITKDNQ--MLISYAK 252
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 221 PPCNTLFIGNLGESINEEE----LRGLFSAQPGFKQMKVLRQERHT-VCFIEFEDVNSAS 275
PP T++I NL E I EE LR +FS + + +H ++ FEDV SA+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 276 SVHHNLQGAVIPSSGSVGMRIQY--SKNPFGKRKDGT 310
++Q P MRIQY +K+ + DGT
Sbjct: 80 EALKSMQD--FPFHNK-PMRIQYAKTKSDIIAKADGT 113
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 100/261 (38%), Gaps = 43/261 (16%)
Query: 51 TIFITGLPDDVKERELQNLLR--------WLPGYEASQVNYKGEKPMGFALFSTAQLAVA 102
TI+I L + +K EL+ LR L + +KG+ + +F A
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQ---AWVVFEDVASATE 80
Query: 103 AKDALQEMIFDAETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAP 162
A ++Q+ F + + + + K I+A + + R D
Sbjct: 81 ALKSMQDFPFHNKPMRIQYAK-------TKSDIIAKADGTFVPRERRKRNDEKPEKKQKR 133
Query: 163 SPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV-QMP--APAPVPAPSSYVPVQNTKD 219
H G + Y P G YG PP+ Q+P V P VP
Sbjct: 134 EQHHDVSQVGLGVNAY---------P-GVYGAPPLSQLPFAGAQKVMMPEIIVP------ 177
Query: 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHH 279
N LF+ NL L+ LF PGFK+++++ + + + F+E+ D A++ +
Sbjct: 178 ---NNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV-EAKPGIAFVEYGDEGQATAAMN 233
Query: 280 NLQGAVIPSSGSVGMRIQYSK 300
+LQG I M I Y+K
Sbjct: 234 HLQGFKITKDNQ--MLISYAK 252
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 221 PPCNTLFIGNLGESINEEE----LRGLFSAQPGFKQMKVLRQERHT-VCFIEFEDVNSAS 275
PP T++I NL E I EE LR +FS + + +H ++ FEDV SA+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 276 SVHHNLQGAVIPSSGSVGMRIQY--SKNPFGKRKDGT 310
++Q P MRIQY +K+ + DGT
Sbjct: 80 EALKSMQD--FPFHNK-PMRIQYAKTKSDIIAKADGT 113
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 194 VPPVQMPAPAPVPAPSSYVPVQNTK--DNPPCNTLFIGNLGESINEEELRGLFSAQPGFK 251
+ P P P ++Y Q T+ +P T+F+G L ++ EE LR +FS
Sbjct: 250 IGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV 309
Query: 252 QMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKRKDGT 310
+K++ +R F++F SA +L G + G +R+ + ++P K+ D T
Sbjct: 310 HVKIVAGKR--CGFVQFGTRASAEQALSSLNGTQL---GGQSIRLSWGRSPSSKQTDQT 363
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 108/265 (40%), Gaps = 47/265 (17%)
Query: 50 RTIFITGLPDDVKERELQNLL--------RWLPGYEASQVNYKGEKPMGFALFSTAQLAV 101
+TI+I L + VK EL+ L + L +KG+ + F +A A+
Sbjct: 18 QTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAI 77
Query: 102 AAKDAL----QEM-IFDAETKSVLHTEMAKKN-LFVKRGIVADTNAYDQSKRLRTGGDYT 155
A + +EM I A+TKS + +AK + FV R +++ + D
Sbjct: 78 AKMNNFPFYDKEMRIQYAKTKSDV---VAKADGTFVPR---EKRKRHEEKGGGKKKKDQH 131
Query: 156 HTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQ 215
H P ++ V+G A PP PY G G+ P APAP
Sbjct: 132 HDSTQMGMPMNSAYPGVYG-----AAPPLSQVPYPG-GMKPNMPEAPAP----------- 174
Query: 216 NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSAS 275
P N LF+ NL L+ LF GFK+++++ + + + F+EF D ++
Sbjct: 175 ------PNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMI-EAKPGIAFVEFADEMQST 227
Query: 276 SVHHNLQGAVIPSSGSVGMRIQYSK 300
LQG I + M I Y+K
Sbjct: 228 VAMQGLQGFKIQQN---QMLITYAK 249
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL L+ LF PGF++++++ + + + F+E+ED + +
Sbjct: 155 PPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMI-EAKPGIAFVEYEDDSQSMVAMQA 213
Query: 281 LQGAVI 286
LQG I
Sbjct: 214 LQGFKI 219
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN 280
PP N LFI NL L+ LF PGF++++++ + + + F+E+ED + +
Sbjct: 155 PPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMI-EAKPGIAFVEYEDDSQSMVAMQA 213
Query: 281 LQGAVI 286
LQG I
Sbjct: 214 LQGFKI 219
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 217 TKDNPPCNT-LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSAS 275
T DN P NT +F+G L S+ ++ L+ +FS +K+ +R F++F + + A
Sbjct: 253 TTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR--CGFVQFSEKSCAE 310
Query: 276 SVHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306
L G + G +R+ + ++P K+
Sbjct: 311 EALRMLNGVQL---GGTTVRLSWGRSPSNKQ 338
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 14/149 (9%)
Query: 164 PFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPC 223
P HAPP P G PP QM P PS VQ T +
Sbjct: 12 PHHAPP-----PSAQQQYGYQQPYGIAGAAPPPPQMWNPQAAAPPS----VQPTTAD-EI 61
Query: 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHH 279
TL+IG+L ++E L G F+ KV+R ++ FIEF +A V
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 280 NLQGAVIPSSGSVGMRIQYSKNPFGKRKD 308
A IPS R+ ++ G ++D
Sbjct: 122 TFNNAPIPSFPDQLFRLNWASLSSGDKRD 150
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 22/145 (15%)
Query: 179 MAPPPPPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEE 238
+A P + V PV MP PV S+ PV D +T+F+G L + ++EE
Sbjct: 262 LATPKSKAHVFSPVNVVPVSMP---PVGFYSAAQPVPQFADTA-NSTVFVGGLSKFVSEE 317
Query: 239 ELRGLFSAQPGFKQMKVLRQERHTVC-FIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297
EL+ LF F ++ ++ C F++F + SA + LQG + G+ +R+
Sbjct: 318 ELKYLFQ---NFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPL---GNSRIRLS 371
Query: 298 Y--SKNPFGKRKDGTNGVPPALNYQ 320
+ ++NP PALNYQ
Sbjct: 372 WGRNQNPIAA---------PALNYQ 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,848,999
Number of Sequences: 539616
Number of extensions: 7537947
Number of successful extensions: 108467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 762
Number of HSP's that attempted gapping in prelim test: 59913
Number of HSP's gapped (non-prelim): 35322
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)