Query 020917
Match_columns 320
No_of_seqs 135 out of 1918
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:10:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.7E-31 1E-35 245.6 25.6 78 222-302 268-349 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 1.3E-31 2.9E-36 245.9 21.1 163 47-302 105-275 (346)
3 KOG1457 RNA binding protein (c 100.0 1.5E-29 3.3E-34 209.0 19.8 255 34-297 18-284 (284)
4 TIGR01645 half-pint poly-U bin 100.0 1.5E-29 3.3E-34 244.1 20.4 172 47-302 105-284 (612)
5 KOG0148 Apoptosis-promoting RN 100.0 3.1E-29 6.7E-34 212.6 16.6 175 49-304 62-240 (321)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-27 2.7E-32 230.7 26.6 198 46-302 272-480 (481)
7 KOG0117 Heterogeneous nuclear 100.0 1.3E-28 2.9E-33 221.6 18.3 249 41-309 75-338 (506)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.1E-27 1.3E-31 226.0 28.0 245 48-302 95-351 (481)
9 KOG0145 RNA-binding protein EL 100.0 3E-27 6.4E-32 199.5 20.3 248 47-302 39-358 (360)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.3E-26 4.9E-31 224.3 27.5 192 44-302 170-375 (509)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 2.5E-27 5.4E-32 228.4 20.2 241 41-304 50-309 (578)
12 TIGR01622 SF-CC1 splicing fact 100.0 3.9E-27 8.3E-32 226.8 21.1 172 46-301 86-265 (457)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1.5E-26 3.2E-31 228.0 19.2 160 51-303 2-168 (562)
14 TIGR01628 PABP-1234 polyadenyl 99.9 3.5E-26 7.5E-31 225.4 18.8 182 47-302 176-364 (562)
15 KOG0144 RNA-binding protein CU 99.9 4.1E-26 8.8E-31 204.8 14.8 167 47-302 32-206 (510)
16 KOG0109 RNA-binding protein LA 99.9 1.7E-26 3.6E-31 197.9 11.7 150 50-304 3-152 (346)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.6E-25 1.4E-29 214.0 23.9 188 46-300 292-500 (509)
18 KOG0146 RNA-binding protein ET 99.9 2.7E-25 5.8E-30 188.4 16.8 272 31-306 2-369 (371)
19 TIGR01622 SF-CC1 splicing fact 99.9 2.3E-24 5E-29 207.5 23.8 240 49-301 186-447 (457)
20 KOG0131 Splicing factor 3b, su 99.9 3.3E-25 7.1E-30 178.2 12.7 161 46-304 6-179 (203)
21 KOG4206 Spliceosomal protein s 99.9 9E-24 2E-28 176.3 18.6 205 47-300 7-220 (221)
22 KOG0127 Nucleolar protein fibr 99.9 1.3E-23 2.7E-28 193.6 16.5 190 49-307 5-201 (678)
23 KOG0127 Nucleolar protein fibr 99.9 9.9E-23 2.2E-27 187.7 20.8 237 48-302 116-378 (678)
24 KOG0144 RNA-binding protein CU 99.9 4.6E-23 9.9E-28 185.2 15.4 103 28-130 103-208 (510)
25 KOG0110 RNA-binding protein (R 99.9 4.3E-22 9.4E-27 188.9 12.3 165 52-302 518-693 (725)
26 TIGR01645 half-pint poly-U bin 99.9 4.2E-20 9.1E-25 178.9 25.5 78 48-128 203-284 (612)
27 KOG0123 Polyadenylate-binding 99.9 9.4E-21 2E-25 175.2 16.1 149 50-302 2-153 (369)
28 KOG0147 Transcriptional coacti 99.8 3.4E-21 7.5E-26 178.3 11.1 235 47-299 276-525 (549)
29 KOG0124 Polypyrimidine tract-b 99.8 2.8E-20 6.1E-25 164.1 9.4 166 49-302 113-290 (544)
30 KOG1190 Polypyrimidine tract-b 99.8 3.6E-18 7.8E-23 152.9 20.7 190 49-302 297-491 (492)
31 KOG0148 Apoptosis-promoting RN 99.8 1.4E-19 3.1E-24 154.1 11.1 77 223-302 62-142 (321)
32 KOG0105 Alternative splicing f 99.8 2.5E-18 5.4E-23 138.8 15.2 169 47-288 4-177 (241)
33 KOG1190 Polypyrimidine tract-b 99.8 1E-17 2.3E-22 150.0 18.3 217 47-302 148-373 (492)
34 KOG1456 Heterogeneous nuclear 99.8 1.5E-16 3.3E-21 141.1 22.5 234 45-305 116-366 (494)
35 KOG0123 Polyadenylate-binding 99.8 6.7E-18 1.5E-22 156.3 14.0 162 52-301 79-245 (369)
36 KOG0147 Transcriptional coacti 99.7 2.4E-18 5.2E-23 159.6 7.7 177 46-304 176-360 (549)
37 PLN03134 glycine-rich RNA-bind 99.7 2.7E-17 5.8E-22 133.2 12.2 78 222-302 33-114 (144)
38 KOG0110 RNA-binding protein (R 99.7 5.4E-16 1.2E-20 147.8 15.5 203 49-300 385-596 (725)
39 KOG1548 Transcription elongati 99.7 4.4E-15 9.4E-20 130.9 17.4 195 46-299 131-349 (382)
40 KOG4205 RNA-binding protein mu 99.7 2.9E-16 6.3E-21 140.8 10.2 164 48-302 5-176 (311)
41 KOG0106 Alternative splicing f 99.6 4.5E-16 9.8E-21 131.5 8.1 166 50-298 2-167 (216)
42 PLN03134 glycine-rich RNA-bind 99.6 2.8E-15 6E-20 121.4 12.0 85 43-130 28-116 (144)
43 PF00076 RRM_1: RNA recognitio 99.6 1.6E-15 3.6E-20 107.1 8.9 67 226-295 1-70 (70)
44 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 7.5E-15 1.6E-19 136.7 13.0 79 47-128 267-349 (352)
45 TIGR01659 sex-lethal sex-letha 99.6 3.4E-15 7.3E-20 137.6 10.5 81 219-302 103-187 (346)
46 KOG4212 RNA-binding protein hn 99.6 6.2E-14 1.3E-18 126.9 17.9 236 47-302 42-294 (608)
47 KOG0107 Alternative splicing f 99.6 8.7E-15 1.9E-19 117.5 9.3 78 223-304 10-87 (195)
48 KOG0125 Ataxin 2-binding prote 99.6 2.1E-14 4.6E-19 125.7 12.5 87 223-312 96-184 (376)
49 PLN03120 nucleic acid binding 99.6 1.5E-14 3.3E-19 125.4 10.3 76 223-302 4-80 (260)
50 TIGR01648 hnRNP-R-Q heterogene 99.6 2.2E-14 4.7E-19 139.1 12.5 78 47-129 231-308 (578)
51 KOG0120 Splicing factor U2AF, 99.6 3.6E-14 7.8E-19 133.5 12.9 181 47-298 287-488 (500)
52 KOG0124 Polypyrimidine tract-b 99.6 5.6E-13 1.2E-17 118.3 19.3 75 49-126 210-288 (544)
53 KOG0122 Translation initiation 99.5 1.9E-14 4.1E-19 121.4 8.9 78 222-302 188-269 (270)
54 KOG0114 Predicted RNA-binding 99.5 2.8E-14 6E-19 104.8 8.5 74 223-299 18-92 (124)
55 KOG0125 Ataxin 2-binding prote 99.5 3.4E-14 7.4E-19 124.4 10.6 79 45-130 92-176 (376)
56 PLN03213 repressor of silencin 99.5 2.4E-14 5.1E-19 131.4 9.1 79 222-303 9-89 (759)
57 PF14259 RRM_6: RNA recognitio 99.5 1.5E-13 3.3E-18 97.3 9.0 67 226-295 1-70 (70)
58 KOG0121 Nuclear cap-binding pr 99.5 5.2E-14 1.1E-18 107.4 6.9 75 222-299 35-113 (153)
59 PF00076 RRM_1: RNA recognitio 99.5 1.9E-13 4.2E-18 96.4 8.5 67 52-121 1-70 (70)
60 KOG0145 RNA-binding protein EL 99.5 3.9E-13 8.5E-18 114.3 11.2 94 221-317 39-139 (360)
61 KOG4206 Spliceosomal protein s 99.5 1.5E-13 3.3E-18 115.2 7.8 78 222-302 8-90 (221)
62 KOG0107 Alternative splicing f 99.5 2.2E-13 4.7E-18 109.6 7.6 76 48-130 9-87 (195)
63 KOG1456 Heterogeneous nuclear 99.4 3.4E-12 7.4E-17 113.7 15.5 167 47-302 29-199 (494)
64 PLN03121 nucleic acid binding 99.4 5.6E-13 1.2E-17 113.9 10.0 74 223-300 5-79 (243)
65 PF13893 RRM_5: RNA recognitio 99.4 6.3E-13 1.4E-17 89.9 8.1 56 240-299 1-56 (56)
66 smart00362 RRM_2 RNA recogniti 99.4 7.6E-13 1.6E-17 92.9 8.9 70 225-297 1-72 (72)
67 PLN03120 nucleic acid binding 99.4 8.3E-13 1.8E-17 114.7 9.7 75 49-127 4-79 (260)
68 KOG0114 Predicted RNA-binding 99.4 1.5E-12 3.2E-17 95.8 9.5 78 46-130 15-97 (124)
69 KOG0109 RNA-binding protein LA 99.4 2E-13 4.4E-18 117.8 5.7 72 224-302 3-74 (346)
70 COG0724 RNA-binding proteins ( 99.4 3.7E-12 8.1E-17 113.1 14.0 76 49-127 115-194 (306)
71 KOG0122 Translation initiation 99.4 1.3E-12 2.9E-17 110.3 10.3 77 45-128 185-269 (270)
72 KOG4207 Predicted splicing fac 99.4 3.1E-13 6.7E-18 111.4 5.5 75 223-300 13-91 (256)
73 KOG0105 Alternative splicing f 99.4 5.3E-13 1.2E-17 108.1 6.6 77 223-302 6-83 (241)
74 KOG0121 Nuclear cap-binding pr 99.4 6.6E-13 1.4E-17 101.3 6.7 76 47-125 34-113 (153)
75 cd00590 RRM RRM (RNA recogniti 99.4 4.9E-12 1.1E-16 89.3 9.5 71 225-298 1-74 (74)
76 KOG0111 Cyclophilin-type pepti 99.4 6.1E-13 1.3E-17 110.6 4.7 77 223-302 10-90 (298)
77 smart00360 RRM RNA recognition 99.4 3.8E-12 8.3E-17 88.9 8.0 67 228-297 1-71 (71)
78 KOG0126 Predicted RNA-binding 99.3 1.3E-13 2.8E-18 111.4 0.3 77 223-302 35-115 (219)
79 PLN03213 repressor of silencin 99.3 3E-12 6.6E-17 117.7 9.1 80 47-129 8-89 (759)
80 KOG0117 Heterogeneous nuclear 99.3 2.2E-12 4.8E-17 117.3 8.0 78 48-132 258-335 (506)
81 KOG0130 RNA-binding protein RB 99.3 2.8E-12 6E-17 98.8 6.3 77 223-302 72-152 (170)
82 KOG0113 U1 small nuclear ribon 99.3 1.2E-11 2.5E-16 107.4 10.0 81 219-302 97-181 (335)
83 KOG4212 RNA-binding protein hn 99.3 3.1E-10 6.7E-15 103.2 19.3 75 221-299 534-608 (608)
84 PF14259 RRM_6: RNA recognitio 99.3 9.4E-12 2E-16 88.0 7.7 63 52-121 1-70 (70)
85 KOG0108 mRNA cleavage and poly 99.3 6.5E-12 1.4E-16 117.7 7.9 78 224-304 19-100 (435)
86 COG0724 RNA-binding proteins ( 99.3 1.5E-11 3.3E-16 109.1 9.8 76 223-301 115-194 (306)
87 KOG4211 Splicing factor hnRNP- 99.3 1.1E-10 2.3E-15 107.9 15.2 159 47-288 8-171 (510)
88 KOG0149 Predicted RNA-binding 99.3 7.5E-12 1.6E-16 105.4 6.9 73 223-299 12-88 (247)
89 PLN03121 nucleic acid binding 99.3 2.4E-11 5.3E-16 103.9 9.5 75 48-126 4-79 (243)
90 KOG1457 RNA binding protein (c 99.3 1.6E-10 3.4E-15 96.6 13.5 95 221-315 32-131 (284)
91 KOG0132 RNA polymerase II C-te 99.2 1.9E-11 4.2E-16 117.9 8.5 80 222-307 420-499 (894)
92 KOG0108 mRNA cleavage and poly 99.2 2.3E-11 4.9E-16 114.0 8.1 74 50-130 19-100 (435)
93 KOG0120 Splicing factor U2AF, 99.2 1.2E-10 2.6E-15 109.9 11.7 183 45-300 171-367 (500)
94 smart00362 RRM_2 RNA recogniti 99.2 1.7E-10 3.6E-15 80.8 8.9 65 51-122 1-71 (72)
95 KOG0149 Predicted RNA-binding 99.2 3.6E-11 7.8E-16 101.4 6.3 75 49-127 12-90 (247)
96 KOG0131 Splicing factor 3b, su 99.2 2.7E-11 5.8E-16 98.2 5.0 75 223-300 9-87 (203)
97 KOG0153 Predicted RNA-binding 99.2 1.1E-10 2.3E-15 103.5 8.2 74 223-301 228-302 (377)
98 KOG0111 Cyclophilin-type pepti 99.2 2.5E-11 5.4E-16 101.1 4.0 77 47-130 8-92 (298)
99 smart00361 RRM_1 RNA recogniti 99.1 1.5E-10 3.2E-15 82.0 7.1 58 237-297 2-70 (70)
100 cd00590 RRM RRM (RNA recogniti 99.1 3.5E-10 7.6E-15 79.6 8.9 71 51-124 1-74 (74)
101 KOG4207 Predicted splicing fac 99.1 9.3E-11 2E-15 96.9 6.5 76 47-129 11-94 (256)
102 KOG0130 RNA-binding protein RB 99.1 1.3E-10 2.8E-15 89.6 6.1 79 47-128 70-152 (170)
103 KOG0113 U1 small nuclear ribon 99.1 5E-10 1.1E-14 97.4 9.9 81 45-128 97-181 (335)
104 smart00360 RRM RNA recognition 99.1 4.3E-10 9.4E-15 78.3 7.6 66 54-122 1-70 (71)
105 KOG0112 Large RNA-binding prot 99.1 1.6E-10 3.4E-15 113.3 5.7 166 47-309 370-538 (975)
106 PF13893 RRM_5: RNA recognitio 99.1 1E-09 2.2E-14 74.1 7.9 53 66-125 1-56 (56)
107 KOG0129 Predicted RNA-binding 99.0 4.5E-09 9.8E-14 97.9 13.0 156 49-280 259-432 (520)
108 KOG0146 RNA-binding protein ET 99.0 9.5E-10 2.1E-14 94.3 7.1 79 222-301 18-100 (371)
109 KOG0415 Predicted peptidyl pro 99.0 1.1E-09 2.5E-14 97.2 7.5 84 216-302 232-319 (479)
110 KOG0126 Predicted RNA-binding 99.0 4.9E-11 1.1E-15 96.6 -1.1 73 48-127 34-114 (219)
111 KOG4454 RNA binding protein (R 99.0 2.5E-10 5.4E-15 95.2 2.7 137 47-288 7-152 (267)
112 KOG4660 Protein Mei2, essentia 99.0 2.1E-09 4.6E-14 100.8 9.0 177 46-301 72-249 (549)
113 KOG0132 RNA polymerase II C-te 98.9 1.7E-09 3.7E-14 104.7 7.6 73 49-128 421-495 (894)
114 KOG0151 Predicted splicing reg 98.9 5.1E-09 1.1E-13 100.5 9.1 80 220-302 171-257 (877)
115 KOG2193 IGF-II mRNA-binding pr 98.9 2.4E-10 5.1E-15 103.6 -0.6 149 51-298 3-153 (584)
116 KOG4660 Protein Mei2, essentia 98.9 1.8E-09 3.9E-14 101.3 4.2 73 219-295 71-143 (549)
117 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.4E-08 3.1E-13 95.3 9.8 80 47-129 403-486 (940)
118 smart00361 RRM_1 RNA recogniti 98.8 1.3E-08 2.9E-13 71.9 6.9 57 63-122 2-69 (70)
119 KOG4661 Hsp27-ERE-TATA-binding 98.8 9.7E-09 2.1E-13 96.4 7.5 80 222-304 404-487 (940)
120 KOG4208 Nucleolar RNA-binding 98.8 1.6E-08 3.6E-13 83.8 7.6 74 223-299 49-127 (214)
121 KOG0128 RNA-binding protein SA 98.8 2.4E-09 5.3E-14 104.7 2.7 141 50-302 668-815 (881)
122 KOG0153 Predicted RNA-binding 98.7 2.5E-08 5.4E-13 88.7 7.5 72 49-127 228-302 (377)
123 KOG0226 RNA-binding proteins [ 98.7 3.3E-08 7.1E-13 84.4 7.3 76 223-301 190-269 (290)
124 KOG1365 RNA-binding protein Fu 98.7 3.2E-08 6.9E-13 89.0 6.7 182 51-297 163-357 (508)
125 KOG4210 Nuclear localization s 98.7 3.8E-08 8.3E-13 88.3 6.9 169 48-302 87-264 (285)
126 KOG4211 Splicing factor hnRNP- 98.6 8.3E-06 1.8E-10 76.0 20.9 75 48-126 102-180 (510)
127 KOG0533 RRM motif-containing p 98.6 1.2E-07 2.5E-12 82.4 7.9 77 223-302 83-162 (243)
128 KOG0106 Alternative splicing f 98.6 5E-08 1.1E-12 82.9 5.0 71 225-302 3-73 (216)
129 KOG0415 Predicted peptidyl pro 98.6 7.3E-08 1.6E-12 85.9 6.0 82 46-130 236-321 (479)
130 PF11608 Limkain-b1: Limkain b 98.5 6.5E-07 1.4E-11 63.8 7.6 70 224-302 3-77 (90)
131 KOG4208 Nucleolar RNA-binding 98.5 4.3E-07 9.4E-12 75.5 7.4 80 46-128 46-130 (214)
132 KOG0116 RasGAP SH3 binding pro 98.5 4.1E-07 8.8E-12 85.2 7.9 78 223-304 288-369 (419)
133 KOG4454 RNA binding protein (R 98.5 5.6E-08 1.2E-12 81.3 1.9 73 223-298 9-83 (267)
134 KOG4676 Splicing factor, argin 98.5 1.7E-07 3.6E-12 84.6 4.7 200 50-288 8-215 (479)
135 KOG1548 Transcription elongati 98.5 6.3E-07 1.4E-11 79.9 8.3 77 223-302 134-221 (382)
136 KOG0533 RRM motif-containing p 98.5 6.5E-07 1.4E-11 77.8 8.2 81 49-132 83-166 (243)
137 PF04059 RRM_2: RNA recognitio 98.4 1.8E-06 4E-11 64.4 8.7 76 50-127 2-86 (97)
138 KOG0151 Predicted splicing reg 98.4 1.6E-06 3.4E-11 83.8 8.7 76 46-128 171-257 (877)
139 KOG0116 RasGAP SH3 binding pro 98.3 3.5E-06 7.5E-11 79.0 9.8 80 45-128 284-367 (419)
140 KOG4205 RNA-binding protein mu 98.3 1E-06 2.2E-11 79.6 5.9 76 223-302 6-85 (311)
141 KOG1365 RNA-binding protein Fu 98.3 2.4E-05 5.1E-10 70.8 14.2 156 47-279 58-224 (508)
142 PF04059 RRM_2: RNA recognitio 98.3 5.9E-06 1.3E-10 61.7 8.8 79 224-302 2-87 (97)
143 PF11608 Limkain-b1: Limkain b 98.3 4.2E-06 9.1E-11 59.7 7.1 74 50-128 3-77 (90)
144 KOG4209 Splicing factor RNPS1, 98.2 2.9E-06 6.2E-11 73.8 6.1 77 222-302 100-180 (231)
145 PF08777 RRM_3: RNA binding mo 98.2 6.4E-06 1.4E-10 62.8 6.7 59 224-284 2-60 (105)
146 KOG0226 RNA-binding proteins [ 98.1 4.6E-06 9.9E-11 71.5 4.8 72 49-123 190-265 (290)
147 KOG4307 RNA binding protein RB 98.0 5.1E-05 1.1E-09 73.5 11.3 193 49-298 311-510 (944)
148 KOG0112 Large RNA-binding prot 97.9 2E-05 4.2E-10 78.4 5.7 91 216-309 365-460 (975)
149 KOG4209 Splicing factor RNPS1, 97.9 2.4E-05 5.2E-10 68.1 5.4 79 46-128 98-180 (231)
150 KOG4307 RNA binding protein RB 97.8 0.00017 3.7E-09 70.0 11.1 74 47-123 865-942 (944)
151 COG5175 MOT2 Transcriptional r 97.8 4.6E-05 1E-09 67.9 6.3 78 223-303 114-204 (480)
152 KOG2202 U2 snRNP splicing fact 97.7 1.7E-05 3.6E-10 68.4 1.8 60 238-300 83-146 (260)
153 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00023 4.9E-09 47.1 5.5 52 224-278 2-53 (53)
154 KOG1995 Conserved Zn-finger pr 97.5 0.00015 3.2E-09 65.4 4.6 81 220-303 63-155 (351)
155 KOG1996 mRNA splicing factor [ 97.4 0.00046 9.9E-09 60.6 6.4 74 222-298 280-363 (378)
156 KOG1855 Predicted RNA-binding 97.4 0.00015 3.3E-09 66.6 3.6 75 221-298 229-320 (484)
157 PF08952 DUF1866: Domain of un 97.4 0.0011 2.5E-08 52.8 8.0 72 220-299 24-104 (146)
158 KOG2416 Acinus (induces apopto 97.3 0.00057 1.2E-08 65.4 7.0 81 47-128 442-522 (718)
159 PF08777 RRM_3: RNA binding mo 97.3 0.00066 1.4E-08 51.7 5.9 57 50-110 2-60 (105)
160 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0035 7.5E-08 47.2 7.9 73 223-300 6-90 (100)
161 KOG2314 Translation initiation 97.1 0.0017 3.7E-08 61.9 7.4 74 223-298 58-140 (698)
162 KOG4849 mRNA cleavage factor I 97.0 0.017 3.8E-07 52.1 12.7 73 48-123 79-157 (498)
163 COG5175 MOT2 Transcriptional r 96.9 0.0012 2.7E-08 59.0 4.9 78 49-129 114-204 (480)
164 KOG4676 Splicing factor, argin 96.9 0.0013 2.8E-08 60.1 4.8 73 224-300 8-88 (479)
165 KOG0115 RNA-binding protein p5 96.9 0.003 6.5E-08 54.7 6.7 65 224-288 32-99 (275)
166 KOG2416 Acinus (induces apopto 96.9 0.0011 2.3E-08 63.5 4.2 80 219-300 440-520 (718)
167 PF15023 DUF4523: Protein of u 96.8 0.0045 9.7E-08 48.9 6.6 74 220-300 83-160 (166)
168 KOG3152 TBP-binding protein, a 96.8 0.00072 1.6E-08 58.4 2.2 66 223-288 74-155 (278)
169 KOG2314 Translation initiation 96.6 0.0052 1.1E-07 58.7 6.5 75 47-123 56-139 (698)
170 PF10309 DUF2414: Protein of u 96.6 0.012 2.6E-07 40.0 6.6 54 224-281 6-62 (62)
171 KOG2193 IGF-II mRNA-binding pr 96.5 0.0031 6.7E-08 58.2 4.5 72 224-302 2-76 (584)
172 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0081 1.8E-07 39.7 5.2 50 50-104 2-53 (53)
173 PF04847 Calcipressin: Calcipr 96.4 0.0091 2E-07 50.2 6.2 62 236-302 8-71 (184)
174 KOG4210 Nuclear localization s 96.4 0.0024 5.3E-08 57.5 2.9 77 46-130 181-266 (285)
175 KOG0128 RNA-binding protein SA 96.3 0.00021 4.6E-09 70.9 -4.4 58 223-280 667-728 (881)
176 KOG0129 Predicted RNA-binding 96.3 0.01 2.2E-07 56.2 6.4 62 45-106 366-432 (520)
177 KOG4849 mRNA cleavage factor I 96.3 0.0062 1.3E-07 54.9 4.7 76 222-299 79-160 (498)
178 KOG1995 Conserved Zn-finger pr 96.2 0.0066 1.4E-07 55.0 4.5 81 47-130 64-156 (351)
179 KOG4574 RNA-binding protein (c 96.2 0.0035 7.6E-08 62.5 2.8 77 223-302 298-374 (1007)
180 KOG2068 MOT2 transcription fac 96.1 0.0023 5E-08 57.5 1.1 79 224-305 78-166 (327)
181 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.0035 7.5E-08 52.5 2.0 81 47-127 5-97 (176)
182 PF08675 RNA_bind: RNA binding 95.8 0.02 4.4E-07 41.1 4.7 55 49-109 9-64 (87)
183 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.04 8.7E-07 46.1 7.2 77 223-299 7-95 (176)
184 PF07576 BRAP2: BRCA1-associat 95.7 0.19 4.2E-06 38.5 10.2 67 223-289 13-82 (110)
185 KOG2202 U2 snRNP splicing fact 95.7 0.0052 1.1E-07 53.2 1.5 39 87-128 110-148 (260)
186 PF05172 Nup35_RRM: Nup53/35/4 95.7 0.067 1.5E-06 40.2 7.3 71 48-127 5-91 (100)
187 PF08952 DUF1866: Domain of un 95.6 0.048 1E-06 43.7 6.6 73 47-127 25-106 (146)
188 KOG2253 U1 snRNP complex, subu 95.3 0.029 6.2E-07 54.8 5.4 73 222-302 39-111 (668)
189 PF08675 RNA_bind: RNA binding 95.3 0.13 2.8E-06 37.0 7.3 55 223-282 9-63 (87)
190 KOG1855 Predicted RNA-binding 95.3 0.024 5.3E-07 52.6 4.5 63 47-109 229-308 (484)
191 KOG3152 TBP-binding protein, a 95.2 0.013 2.8E-07 50.8 2.4 61 49-113 74-154 (278)
192 PF10309 DUF2414: Protein of u 95.1 0.098 2.1E-06 35.6 6.0 56 50-107 6-62 (62)
193 PF03880 DbpA: DbpA RNA bindin 95.1 0.084 1.8E-06 37.4 6.0 67 225-299 2-74 (74)
194 KOG2253 U1 snRNP complex, subu 94.6 0.059 1.3E-06 52.7 5.2 71 46-124 37-107 (668)
195 KOG0804 Cytoplasmic Zn-finger 94.5 0.27 6E-06 46.1 9.1 68 223-290 74-144 (493)
196 PF07576 BRAP2: BRCA1-associat 93.8 0.6 1.3E-05 35.8 8.5 66 47-113 11-80 (110)
197 KOG2135 Proteins containing th 93.7 0.039 8.4E-07 51.9 2.1 73 223-301 372-445 (526)
198 KOG0115 RNA-binding protein p5 93.2 0.12 2.6E-06 45.0 4.0 76 50-125 32-111 (275)
199 PF11767 SET_assoc: Histone ly 93.1 0.45 9.8E-06 32.8 6.2 49 60-113 11-59 (66)
200 PF04847 Calcipressin: Calcipr 92.7 0.24 5.2E-06 41.7 5.1 59 63-128 9-71 (184)
201 KOG4285 Mitotic phosphoprotein 92.3 1.1 2.3E-05 40.2 8.9 60 225-288 199-258 (350)
202 PF15023 DUF4523: Protein of u 91.9 0.73 1.6E-05 36.7 6.6 75 46-125 83-159 (166)
203 KOG2591 c-Mpl binding protein, 91.6 0.56 1.2E-05 45.3 6.7 56 223-281 175-232 (684)
204 KOG4410 5-formyltetrahydrofola 91.5 1.2 2.5E-05 39.6 8.1 47 48-98 329-378 (396)
205 KOG1996 mRNA splicing factor [ 91.2 0.66 1.4E-05 41.3 6.3 65 63-130 300-369 (378)
206 KOG2318 Uncharacterized conser 91.1 0.96 2.1E-05 43.9 7.8 78 220-298 171-304 (650)
207 KOG4574 RNA-binding protein (c 89.1 0.28 6.1E-06 49.5 2.6 75 50-129 299-375 (1007)
208 PF03880 DbpA: DbpA RNA bindin 88.4 2.1 4.5E-05 30.1 6.1 63 59-125 11-74 (74)
209 PF11767 SET_assoc: Histone ly 87.7 2.5 5.3E-05 29.2 5.8 50 234-288 11-60 (66)
210 PF07292 NID: Nmi/IFP 35 domai 87.0 1.4 3.1E-05 32.2 4.6 22 223-244 52-73 (88)
211 KOG4410 5-formyltetrahydrofola 86.0 5.9 0.00013 35.3 8.6 50 222-273 329-379 (396)
212 KOG2068 MOT2 transcription fac 85.8 0.28 6.1E-06 44.4 0.4 78 49-130 77-165 (327)
213 KOG4019 Calcineurin-mediated s 82.9 0.86 1.9E-05 37.7 2.0 74 224-302 11-90 (193)
214 KOG2318 Uncharacterized conser 82.2 7 0.00015 38.2 8.0 68 46-113 171-294 (650)
215 KOG0804 Cytoplasmic Zn-finger 80.8 6.8 0.00015 37.1 7.3 64 49-112 74-140 (493)
216 KOG2591 c-Mpl binding protein, 80.6 4 8.6E-05 39.7 5.8 56 49-107 175-232 (684)
217 KOG4483 Uncharacterized conser 79.1 4.9 0.00011 37.4 5.7 61 48-112 390-450 (528)
218 KOG4285 Mitotic phosphoprotein 78.5 20 0.00042 32.4 9.0 57 51-113 199-257 (350)
219 KOG4483 Uncharacterized conser 76.5 3.5 7.6E-05 38.4 4.0 54 223-279 391-445 (528)
220 KOG2135 Proteins containing th 76.4 2 4.2E-05 40.9 2.4 74 49-128 372-446 (526)
221 KOG4019 Calcineurin-mediated s 72.6 9 0.0002 31.9 5.1 76 50-128 11-90 (193)
222 PF07292 NID: Nmi/IFP 35 domai 66.5 2.3 4.9E-05 31.2 0.4 27 48-74 51-77 (88)
223 KOG2891 Surface glycoprotein [ 66.3 2.8 6.1E-05 37.1 1.0 68 235-302 173-268 (445)
224 PF03468 XS: XS domain; Inter 60.9 10 0.00022 29.3 3.1 49 225-274 10-69 (116)
225 KOG1924 RhoA GTPase effector D 58.6 13 0.00028 38.0 4.1 10 54-63 607-616 (1102)
226 KOG2295 C2H2 Zn-finger protein 56.1 2.6 5.6E-05 40.9 -1.0 66 223-288 231-300 (648)
227 PF10567 Nab6_mRNP_bdg: RNA-re 54.9 16 0.00034 32.8 3.7 77 223-302 15-108 (309)
228 PF08734 GYD: GYD domain; Int 54.6 45 0.00098 24.4 5.6 46 237-282 22-68 (91)
229 cd04908 ACT_Bt0572_1 N-termina 54.3 63 0.0014 21.6 6.8 49 237-286 15-64 (66)
230 cd04889 ACT_PDH-BS-like C-term 50.9 57 0.0012 20.8 5.2 41 238-278 13-55 (56)
231 PF08544 GHMP_kinases_C: GHMP 50.9 57 0.0012 22.8 5.6 44 238-282 37-80 (85)
232 KOG1295 Nonsense-mediated deca 50.0 26 0.00057 32.7 4.4 69 49-117 7-82 (376)
233 PRK10905 cell division protein 49.9 1.5E+02 0.0033 27.2 9.1 60 46-109 244-308 (328)
234 COG5638 Uncharacterized conser 49.4 74 0.0016 30.0 7.2 80 220-300 143-296 (622)
235 PF13820 Nucleic_acid_bd: Puta 49.2 37 0.0008 27.5 4.7 58 51-108 6-66 (149)
236 COG0150 PurM Phosphoribosylami 47.7 4.3 9.4E-05 37.2 -0.9 48 237-284 275-322 (345)
237 PF11411 DNA_ligase_IV: DNA li 45.0 14 0.0003 22.1 1.2 17 233-249 19-35 (36)
238 KOG4365 Uncharacterized conser 43.6 3 6.5E-05 39.3 -2.6 80 223-306 3-86 (572)
239 PF14111 DUF4283: Domain of un 43.0 44 0.00096 26.5 4.4 56 50-105 16-73 (153)
240 PRK14548 50S ribosomal protein 39.9 80 0.0017 22.9 4.8 56 50-105 21-79 (84)
241 PRK15464 cold shock-like prote 38.9 28 0.00061 24.2 2.2 20 77-96 6-25 (70)
242 PF14893 PNMA: PNMA 38.8 23 0.00051 32.7 2.3 51 46-96 15-71 (331)
243 KOG1295 Nonsense-mediated deca 37.9 46 0.001 31.1 4.0 66 224-289 8-80 (376)
244 PRK09507 cspE cold shock prote 37.7 31 0.00066 23.9 2.3 20 77-96 5-24 (69)
245 PF08156 NOP5NT: NOP5NT (NUC12 36.7 9.6 0.00021 26.3 -0.4 39 238-282 27-65 (67)
246 KOG2295 C2H2 Zn-finger protein 36.7 5.2 0.00011 38.9 -2.3 65 49-113 231-299 (648)
247 PF08544 GHMP_kinases_C: GHMP 36.3 1.5E+02 0.0032 20.6 6.4 41 64-108 37-80 (85)
248 PRK10943 cold shock-like prote 36.1 34 0.00073 23.7 2.3 20 77-96 5-24 (69)
249 TIGR03636 L23_arch archaeal ri 35.5 1.1E+02 0.0025 21.6 4.9 55 51-105 15-72 (77)
250 PF02714 DUF221: Domain of unk 35.3 44 0.00095 30.5 3.6 36 90-130 1-36 (325)
251 PF03468 XS: XS domain; Inter 35.1 33 0.00071 26.5 2.3 54 52-105 11-75 (116)
252 cd04879 ACT_3PGDH-like ACT_3PG 34.5 1.3E+02 0.0028 19.5 6.3 56 226-282 2-60 (71)
253 PRK09937 stationary phase/star 33.5 41 0.00088 23.7 2.4 18 78-95 4-21 (74)
254 PRK14998 cold shock-like prote 33.1 42 0.00091 23.5 2.4 19 78-96 4-22 (73)
255 PF03439 Spt5-NGN: Early trans 31.9 95 0.0021 22.2 4.2 37 249-286 33-69 (84)
256 PF00403 HMA: Heavy-metal-asso 31.3 1.5E+02 0.0033 19.2 6.2 46 225-272 1-46 (62)
257 PRK15463 cold shock-like prote 30.1 48 0.001 23.0 2.3 20 77-96 6-25 (70)
258 TIGR01873 cas_CT1978 CRISPR-as 29.3 94 0.002 22.7 3.7 47 49-96 25-74 (87)
259 COG0030 KsgA Dimethyladenosine 28.8 74 0.0016 28.3 3.7 24 50-73 96-119 (259)
260 PRK14548 50S ribosomal protein 28.7 2.3E+02 0.005 20.5 5.7 54 226-279 23-79 (84)
261 PRK11901 hypothetical protein; 27.9 4.3E+02 0.0093 24.4 8.4 59 48-109 244-306 (327)
262 PF12829 Mhr1: Transcriptional 27.7 1.5E+02 0.0034 21.8 4.6 54 230-283 19-73 (91)
263 PRK10354 RNA chaperone/anti-te 27.7 54 0.0012 22.7 2.2 19 77-95 6-24 (70)
264 TIGR02381 cspD cold shock doma 27.5 60 0.0013 22.3 2.4 19 78-96 4-22 (68)
265 PRK09890 cold shock protein Cs 26.7 58 0.0013 22.5 2.2 19 77-95 6-24 (70)
266 KOG4213 RNA-binding protein La 26.6 71 0.0015 26.7 2.9 68 223-298 111-183 (205)
267 PF11823 DUF3343: Protein of u 25.8 80 0.0017 21.8 2.8 27 262-288 2-28 (73)
268 PF15513 DUF4651: Domain of un 25.2 77 0.0017 21.5 2.4 18 238-255 9-26 (62)
269 PHA01632 hypothetical protein 24.8 81 0.0017 20.8 2.4 22 52-73 19-40 (64)
270 PF00313 CSD: 'Cold-shock' DNA 24.6 93 0.002 20.8 2.9 19 78-96 3-21 (66)
271 KOG1546 Metacaspase involved i 24.1 3.1E+02 0.0067 25.3 6.8 77 49-130 63-151 (362)
272 cd04904 ACT_AAAH ACT domain of 23.4 2.3E+02 0.0051 19.4 4.9 47 237-283 14-65 (74)
273 cd04458 CSP_CDS Cold-Shock Pro 22.9 89 0.0019 20.8 2.6 19 78-96 3-21 (65)
274 KOG2187 tRNA uracil-5-methyltr 22.4 97 0.0021 30.4 3.5 42 260-304 62-103 (534)
275 PF14893 PNMA: PNMA 22.1 60 0.0013 30.0 2.0 49 222-270 17-71 (331)
276 KOG4357 Uncharacterized conser 21.5 4E+02 0.0087 20.8 6.3 62 223-288 66-140 (164)
277 KOG2855 Ribokinase [Carbohydra 20.6 1.2E+02 0.0026 28.0 3.6 47 223-269 61-108 (330)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.7e-31 Score=245.63 Aligned_cols=78 Identities=18% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+.+|||+|||+++++++|+++|++||.|.+++|+++. .+|||||+|.+.++|.+||++|||+.|.| |.|+|.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g---r~i~V~ 344 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN---RVLQVS 344 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC---eEEEEE
Confidence 35689999999999999999999999999999999765 38999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|..++
T Consensus 345 ~~~~~ 349 (352)
T TIGR01661 345 FKTNK 349 (352)
T ss_pred EccCC
Confidence 99887
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.3e-31 Score=245.90 Aligned_cols=163 Identities=18% Similarity=0.267 Sum_probs=137.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+|||.++||++|+++|+.|+.+..+.|... .++|||||+|.+.++|++||+.|||+.+. +++|+|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~---gr~i~V 181 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR---NKRLKV 181 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC---Cceeee
Confidence 45789999999999999999999999954443333221 24699999999999999999999999998 799999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.|++.....
T Consensus 182 ~~a~p~~~~----------------------------------------------------------------------- 190 (346)
T TIGR01659 182 SYARPGGES----------------------------------------------------------------------- 190 (346)
T ss_pred ecccccccc-----------------------------------------------------------------------
Confidence 988532100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al 278 (320)
...++|||+||+.++||++|+++|++||.|++++|+++.. +|||||+|.+.++|++||
T Consensus 191 ------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 191 ------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 0135799999999999999999999999999999987642 689999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCC
Q 020917 279 HNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 279 ~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+.|||..|.+. .++|+|.|++..
T Consensus 253 ~~lng~~~~g~-~~~l~V~~a~~~ 275 (346)
T TIGR01659 253 SALNNVIPEGG-SQPLTVRLAEEH 275 (346)
T ss_pred HHhCCCccCCC-ceeEEEEECCcc
Confidence 99999999763 268999998875
No 3
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=209.00 Aligned_cols=255 Identities=33% Similarity=0.466 Sum_probs=163.8
Q ss_pred CCCCCCCCC-CCCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCC-----cceEEEEeCCHHHHHHHHHHh
Q 020917 34 PPVPYDNTN-RIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE-----KPMGFALFSTAQLAVAAKDAL 107 (320)
Q Consensus 34 ~~~~~~~~~-~~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~-----kg~aFV~F~~~e~A~~A~~~l 107 (320)
..++++... ....++.|||||++||.++...||..||..|.++|++.++++.. +.+|||.|.+..+|..||++|
T Consensus 18 hsvs~~~~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 18 HSVSPQLPLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred CCCCcccccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHh
Confidence 333433333 33457789999999999999999999999999999999999532 389999999999999999999
Q ss_pred cCceeCcCCCCeEEEEEcccccccccCCccCC----ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 108 QEMIFDAETKSVLHTEMAKKNLFVKRGIVADT----NAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPP 183 (320)
Q Consensus 108 ng~~~~~~~gr~l~v~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (320)
||+.|+.+++..|+|++|+.+.+.++.+.... ..+.........++... ........ .+...+.. ...+.+
T Consensus 98 NGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~--~qhd~~l~-~p~~l~~~--~~a~al 172 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSAD--DQHDEGLS-DPDELQEP--GNADAL 172 (284)
T ss_pred cCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccch--hhcccccc-CccccCCc--cccccC
Confidence 99999999999999999998877655321110 00000000000000000 00000000 00000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCc
Q 020917 184 PPYDPYGGYGVPPVQMPAPAPVPAP--SSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERH 261 (320)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~ 261 (320)
++...+.... ......+.+.. ..-...+.......|.||||-||..++||++|+.+|+.|..+..++|....+.
T Consensus 173 ~~~~~t~~~~----l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~ 248 (284)
T KOG1457|consen 173 KENDTTKSEA----LSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGM 248 (284)
T ss_pred CCccccchhh----hhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCc
Confidence 0000000000 00000000000 00011112233446899999999999999999999999999999999765567
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 262 g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+||++|++.+.|..||..|+|..|..++|..|+|+
T Consensus 249 ~vaf~~~~~~~~at~am~~lqg~~~s~~drgg~~ie 284 (284)
T KOG1457|consen 249 PVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 284 (284)
T ss_pred ceEeecHHHHHHHHHHHHHhhcceeccccCCCcccC
Confidence 899999999999999999999999998877777764
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.5e-29 Score=244.06 Aligned_cols=172 Identities=10% Similarity=0.205 Sum_probs=137.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+||++++++++|+++|+.|+.+....+... .++|||||+|.+.++|++|++.|||..|. ||.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---cceeee
Confidence 45689999999999999999999999944433333221 24699999999999999999999999998 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.+......... ..+.
T Consensus 182 ~rp~~~p~a~~-----------------~~~~------------------------------------------------ 196 (612)
T TIGR01645 182 GRPSNMPQAQP-----------------IIDM------------------------------------------------ 196 (612)
T ss_pred ccccccccccc-----------------cccc------------------------------------------------
Confidence 75422100000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al 278 (320)
........++|||+||++++++++|+++|++||.|.+++|.++. .+|||||+|.+.++|.+|+
T Consensus 197 -------------~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 197 -------------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred -------------ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 00001125789999999999999999999999999999998753 3899999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCC
Q 020917 279 HNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 279 ~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+.|||+.|+| +.|+|.++..+
T Consensus 264 ~amNg~elgG---r~LrV~kAi~p 284 (612)
T TIGR01645 264 ASMNLFDLGG---QYLRVGKCVTP 284 (612)
T ss_pred HHhCCCeeCC---eEEEEEecCCC
Confidence 9999999999 99999999875
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.1e-29 Score=212.63 Aligned_cols=175 Identities=17% Similarity=0.299 Sum_probs=142.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCc-cccEEEe-e--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGY-EASQVNY-K--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~-~~~iv~~-~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.--|||+.|...++-|+||+.|.+|+.+ +.+||+. . .+||||||.|...++|++||+.|||..|. +|.|+-+|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG---~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG---RRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec---cceeeccc
Confidence 4469999999999999999999999555 3444554 2 35799999999999999999999999998 79999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
|..+-.... .+...++
T Consensus 139 ATRKp~e~n---~~~ltfd------------------------------------------------------------- 154 (321)
T KOG0148|consen 139 ATRKPSEMN---GKPLTFD------------------------------------------------------------- 154 (321)
T ss_pred cccCccccC---CCCccHH-------------------------------------------------------------
Confidence 975531000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (320)
.+ -..+.+.++++||||++.-++|++|++.|+.||.|.+||+.+ .+||+||+|++.|+|.+||..|||.
T Consensus 155 --------eV-~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNnt 223 (321)
T KOG0148|consen 155 --------EV-YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNT 223 (321)
T ss_pred --------HH-hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCc
Confidence 00 001223489999999999999999999999999999999985 5799999999999999999999999
Q ss_pred eeCCCCCceeEEEeecCCCC
Q 020917 285 VIPSSGSVGMRIQYSKNPFG 304 (320)
Q Consensus 285 ~l~g~~~~~l~v~~ak~~~~ 304 (320)
+|.| +.+|+.|+|+...
T Consensus 224 ei~G---~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 224 EIGG---QLVRCSWGKEGDD 240 (321)
T ss_pred eeCc---eEEEEeccccCCC
Confidence 9999 8999999998844
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.3e-27 Score=230.73 Aligned_cols=198 Identities=20% Similarity=0.264 Sum_probs=141.2
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPD-DVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..++++|||+||+. .+|+++|+++|+.| |.|.++ +..+|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~y----G~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~---g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVY----GNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLF---GKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEE
Confidence 35688999999997 69999999999999 666444 345799999999999999999999999998 89999
Q ss_pred EEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
|.+++....... .....+.... ...++.. ....+. ..
T Consensus 345 v~~s~~~~~~~~----~~~~~~~~~~--~~~d~~~------~~~~r~----------~~--------------------- 381 (481)
T TIGR01649 345 VCPSKQQNVQPP----REGQLDDGLT--SYKDYSS------SRNHRF----------KK--------------------- 381 (481)
T ss_pred EEEcccccccCC----CCCcCcCCCc--ccccccC------CccccC----------CC---------------------
Confidence 999866532111 0000000000 0000000 000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCC--eeEEEEEecC--CcceEEEEEcCHHHHHHH
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPG--FKQMKVLRQE--RHTVCFIEFEDVNSASSV 277 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~--i~~v~i~~~~--~~g~aFV~F~~~~~A~~A 277 (320)
+.. . .-....+++.+|||+|||.++++++|+++|+.||. |..+++.... .+++|||+|.+.++|..|
T Consensus 382 ------~~~-~--~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~A 452 (481)
T TIGR01649 382 ------PGS-A--NKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEA 452 (481)
T ss_pred ------ccc-c--cccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHH
Confidence 000 0 00011346889999999999999999999999998 8899887432 268999999999999999
Q ss_pred HHHhCCCeeCCCCCc---eeEEEeecCC
Q 020917 278 HHNLQGAVIPSSGSV---GMRIQYSKNP 302 (320)
Q Consensus 278 l~~lnG~~l~g~~~~---~l~v~~ak~~ 302 (320)
|..|||+.|.+...+ .|+|.|++++
T Consensus 453 l~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 453 LIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999982100 5999999875
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=221.57 Aligned_cols=249 Identities=17% Similarity=0.141 Sum_probs=155.1
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 41 TNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 41 ~~~~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
+.+....-.+.||||.||.++.|+||+.||++.+.++..-+.|. .+||||||.|.+.++|.+|++.||+..|..
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~-- 152 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP-- 152 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC--
Confidence 55555567899999999999999999999999944333334442 357999999999999999999999999975
Q ss_pred CCeEEEEEcccccccccCCcc----CCcccccc-ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 117 KSVLHTEMAKKNLFVKRGIVA----DTNAYDQS-KRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGG 191 (320)
Q Consensus 117 gr~l~v~~a~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (320)
||.|.|+.+..++...-+... ++.....- +......+... -.++........+....|... .++
T Consensus 153 GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdViv----y~~p~dk~KNRGFaFveYe~H-------~~A 221 (506)
T KOG0117|consen 153 GKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIV----YPSPDDKTKNRGFAFVEYESH-------RAA 221 (506)
T ss_pred CCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEE----ecCccccccccceEEEEeecc-------hhH
Confidence 999999998777652111000 00000000 00000000000 000000000000000000000 000
Q ss_pred CCCCCC--CCCCCCCCCC----CCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEE
Q 020917 192 YGVPPV--QMPAPAPVPA----PSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCF 265 (320)
Q Consensus 192 ~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aF 265 (320)
.-..+. ......|... ++-.......+.......|||+||+.++|||.|+.+|++||.|..|+.++ -|||
T Consensus 222 a~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r----DYaF 297 (506)
T KOG0117|consen 222 AMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR----DYAF 297 (506)
T ss_pred HHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeeccc----ceeE
Confidence 000000 0000000000 00000001112334468899999999999999999999999999999885 4999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCCCCCC
Q 020917 266 IEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKRKDG 309 (320)
Q Consensus 266 V~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~~~~~~~ 309 (320)
|+|.++++|.+||+.|||++|.| ..|.|.++|....+++..
T Consensus 298 VHf~eR~davkAm~~~ngkeldG---~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 298 VHFAEREDAVKAMKETNGKELDG---SPIEVTLAKPVDKKKKER 338 (506)
T ss_pred EeecchHHHHHHHHHhcCceecC---ceEEEEecCChhhhccch
Confidence 99999999999999999999999 799999999997776663
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.1e-27 Score=225.98 Aligned_cols=245 Identities=17% Similarity=0.159 Sum_probs=143.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~ 127 (320)
...+|||+||++.+|+++|+++|+.|+.+...++..+..+++|||+|.+.++|.+|++.|||..|+. .++.|+|+|++.
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~-~~~~l~v~~sk~ 173 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYN-GCCTLKIEYAKP 173 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccC-CceEEEEEEecC
Confidence 3468999999999999999999999944333222223334799999999999999999999999963 136899999987
Q ss_pred ccccccCCccCCccccccccccCCCCCCCCC---CCCCCCC----CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q 020917 128 NLFVKRGIVADTNAYDQSKRLRTGGDYTHTG---YSAPSPF----HAPPAPVWGPHGYMAPPPPPY-DPYGGYGVPPVQM 199 (320)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 199 (320)
..-.......+..++...... ..+...... ....... .......++... .+ ..+. .++.. ++.....
T Consensus 174 ~~l~v~~~~~~s~dyt~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~-~~~~~~~~~~-~~~~~~~ 248 (481)
T TIGR01649 174 TRLNVKYNDDDSRDYTNPDLP-GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHG--GP-LAPLAGGDRM-GPPHGPP 248 (481)
T ss_pred CCceeEecccCCCCCcCCCCC-CCCCCCcCccccccccccccCCCccCCCcccccCC--CC-CCcccccccC-CCcccCC
Confidence 543111000011111000000 000000000 0000000 000000000000 00 0000 00000 0000000
Q ss_pred CCCCCCCCCCCCC-CCC--CCCCCCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHH
Q 020917 200 PAPAPVPAPSSYV-PVQ--NTKDNPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSAS 275 (320)
Q Consensus 200 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~ 275 (320)
....+.......+ ..+ .....+++++|||+||++ .+|+++|+++|++||.|.+|+|+++ .+|||||+|.+.++|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~ 327 (481)
T TIGR01649 249 SRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQ 327 (481)
T ss_pred CCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHH
Confidence 0000000000000 000 011245688999999998 6999999999999999999999874 4799999999999999
Q ss_pred HHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 276 SVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 276 ~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.||+.|||..|.| ++|+|+|++..
T Consensus 328 ~Ai~~lng~~l~g---~~l~v~~s~~~ 351 (481)
T TIGR01649 328 LALTHLNGVKLFG---KPLRVCPSKQQ 351 (481)
T ss_pred HHHHHhCCCEECC---ceEEEEEcccc
Confidence 9999999999999 99999998764
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=199.54 Aligned_cols=248 Identities=17% Similarity=0.221 Sum_probs=155.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e--CCc-ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~--~~k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
+...+|+|--||..+|+||||.||...+.+|.|.+.. | +.+ ||+||.|-++++|++|+..|||..+. .+.|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KTIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKTIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cceEEE
Confidence 4457899999999999999999999998888877544 2 333 99999999999999999999999998 499999
Q ss_pred EEcccccccccCCccCC---------------------------------------ccccccccccCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADT---------------------------------------NAYDQSKRLRTGGDYTHTGYSAPS 163 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 163 (320)
.||.+.+..+++..-.. ++...+++...... -...+...
T Consensus 116 SyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~A--Ik~lNG~~ 193 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEA--IKGLNGQK 193 (360)
T ss_pred EeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHH--HHhccCCC
Confidence 99999887665321100 01111111110000 00000000
Q ss_pred CCCCCCC--CCCCCC--CCC--CC----CCCCCCCCCC----------CC-CCCCCCCCCCCCCC----CCCCCCCCCCC
Q 020917 164 PFHAPPA--PVWGPH--GYM--AP----PPPPYDPYGG----------YG-VPPVQMPAPAPVPA----PSSYVPVQNTK 218 (320)
Q Consensus 164 ~~~~~~~--~~~~~~--~~~--~~----~~~~~~~~~~----------~~-~~~~~~~~~~~~~~----~~~~~~~~~~~ 218 (320)
+...... ..+.+. +.. .+ ..+|...++. +. .+++........+. -+.........
T Consensus 194 P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~ 273 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPG 273 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCC
Confidence 0000000 000000 000 00 0000000000 00 00000000000000 00001111122
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
......+|||.||.++++|.-|+++|.+||.|..|+++++.+ |||+||.+.+.++|..||..|||+.+++ |.|
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~---rvL 350 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD---RVL 350 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc---eEE
Confidence 223468899999999999999999999999999999998766 8999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020917 295 RIQYSKNP 302 (320)
Q Consensus 295 ~v~~ak~~ 302 (320)
.|+|..++
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99998776
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.3e-26 Score=224.30 Aligned_cols=192 Identities=18% Similarity=0.242 Sum_probs=136.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCcc--------ccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 44 IAHDEVRTIFITGLPDDVKERELQNLLRWLPGYE--------ASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 44 ~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~--------~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
......++|||||||+.+|+++|+++|..++... ..|..+ ...+|||||+|.+.++|..||. |+|+.|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 3456689999999999999999999999862211 123222 3457999999999999999995 9999998
Q ss_pred cCCCCeEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 114 AETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYG 193 (320)
Q Consensus 114 ~~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (320)
|+.|+|...+........ . ...... .+ .. ....
T Consensus 249 ---g~~l~v~r~~~~~~~~~~-----~----------------~~~~~~-----~~------~~----------~~~~-- 281 (509)
T TIGR01642 249 ---NVFLKIRRPHDYIPVPQI-----T----------------PEVSQK-----NP------DD----------NAKN-- 281 (509)
T ss_pred ---CceeEecCccccCCcccc-----C----------------CCCCCC-----CC------cc----------cccc--
Confidence 799998654322110000 0 000000 00 00 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEc
Q 020917 194 VPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFE 269 (320)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~ 269 (320)
.. ............++|||+|||..+++++|+++|+.||.|..+.|+.+. .+|||||+|.
T Consensus 282 --------------~~--~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~ 345 (509)
T TIGR01642 282 --------------VE--KLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYK 345 (509)
T ss_pred --------------cc--cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEEC
Confidence 00 000000111236799999999999999999999999999999998653 3899999999
Q ss_pred CHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 270 DVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 270 ~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+.++|..|+..|||..|.| +.|+|.|+...
T Consensus 346 ~~~~a~~A~~~l~g~~~~~---~~l~v~~a~~~ 375 (509)
T TIGR01642 346 DPSVTDVAIAALNGKDTGD---NKLHVQRACVG 375 (509)
T ss_pred CHHHHHHHHHHcCCCEECC---eEEEEEECccC
Confidence 9999999999999999999 89999998654
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=2.5e-27 Score=228.41 Aligned_cols=241 Identities=15% Similarity=0.136 Sum_probs=144.6
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 41 TNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 41 ~~~~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
+.+...+..++|||+|||.+++|++|+++|+.|+.+..+.|.+. .+||||||+|.+.++|++||+.||+..+.. |
T Consensus 50 ~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~--G 127 (578)
T TIGR01648 50 WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP--G 127 (578)
T ss_pred ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecC--C
Confidence 34434455789999999999999999999999954444333332 356999999999999999999999999954 7
Q ss_pred CeEEEEEcccccccccCCccC----Cccccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CC
Q 020917 118 SVLHTEMAKKNLFVKRGIVAD----TNAYDQSKRL-RTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAP---------PP 183 (320)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 183 (320)
+.|.|.++..++...-..... ....+.-..- ....+...... +........+....+... ..
T Consensus 128 r~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~----~~~kgKnRGFAFVeF~s~edAa~AirkL~ 203 (578)
T TIGR01648 128 RLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS----AADKKKNRGFAFVEYESHRAAAMARRKLM 203 (578)
T ss_pred ccccccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc----ccccCccCceEEEEcCCHHHHHHHHHHhh
Confidence 888888776544321100000 0000000000 00000000000 000000000000000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccC--CCeeEEEEEecCCc
Q 020917 184 PPYDPYGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERH 261 (320)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~--G~i~~v~i~~~~~~ 261 (320)
.-...+.... .......+ ............++|||+||+.++++++|+++|++| |.|.+|++++
T Consensus 204 ~gki~l~Gr~-------I~VdwA~p---~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r---- 269 (578)
T TIGR01648 204 PGRIQLWGHV-------IAVDWAEP---EEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR---- 269 (578)
T ss_pred ccceEecCce-------EEEEeecc---cccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----
Confidence 0000000000 00000000 000011122345789999999999999999999999 9999998874
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCC
Q 020917 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFG 304 (320)
Q Consensus 262 g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~~ 304 (320)
+||||+|.+.++|.+||+.|||..|.| +.|+|.|++.+..
T Consensus 270 gfAFVeF~s~e~A~kAi~~lnG~~i~G---r~I~V~~Akp~~~ 309 (578)
T TIGR01648 270 DYAFVHFEDREDAVKAMDELNGKELEG---SEIEVTLAKPVDK 309 (578)
T ss_pred CeEEEEeCCHHHHHHHHHHhCCCEECC---EEEEEEEccCCCc
Confidence 799999999999999999999999999 9999999988643
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=3.9e-27 Score=226.78 Aligned_cols=172 Identities=19% Similarity=0.295 Sum_probs=136.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
+.+.++|||+|||..+++++|+++|+.|+.+....+.. + .++|||||+|.+.++|.+||. |+|..+. |++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL---GRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC---CeeeE
Confidence 34578999999999999999999999994333222222 1 246999999999999999997 9999998 89999
Q ss_pred EEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
|.++......... . . ..
T Consensus 162 v~~~~~~~~~~~~----------------~--~----~~----------------------------------------- 178 (457)
T TIGR01622 162 VQSSQAEKNRAAK----------------A--A----TH----------------------------------------- 178 (457)
T ss_pred Eeecchhhhhhhh----------------c--c----cc-----------------------------------------
Confidence 9876433211000 0 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHH
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSV 277 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~A 277 (320)
.....+..++|||+||+..+++++|+++|++||.|..|+++.+.. +|||||+|.+.++|..|
T Consensus 179 --------------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 179 --------------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred --------------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 000011268899999999999999999999999999999986543 79999999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEEeecC
Q 020917 278 HHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 278 l~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
++.|||..|.| +.|+|.|+..
T Consensus 245 ~~~l~g~~i~g---~~i~v~~a~~ 265 (457)
T TIGR01622 245 LEVMNGFELAG---RPIKVGYAQD 265 (457)
T ss_pred HHhcCCcEECC---EEEEEEEccC
Confidence 99999999999 9999999763
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.5e-26 Score=228.01 Aligned_cols=160 Identities=18% Similarity=0.251 Sum_probs=133.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
+|||+|||.++||++|+++|+.|+.+....|.. + .++|||||+|.+.++|++|++.||+..+. |+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~---gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG---GKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeeEEeeccc
Confidence 699999999999999999999994433222222 1 23599999999999999999999999998 8999999985
Q ss_pred cccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 127 KNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVP 206 (320)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
......+
T Consensus 79 ~~~~~~~------------------------------------------------------------------------- 85 (562)
T TIGR01628 79 RDPSLRR------------------------------------------------------------------------- 85 (562)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 3211100
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCC
Q 020917 207 APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQG 283 (320)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG 283 (320)
....+|||+||+.++++++|+++|++||.|.+|+++.+. .+|||||+|.+.++|.+|++.|||
T Consensus 86 --------------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 86 --------------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred --------------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 013579999999999999999999999999999998754 379999999999999999999999
Q ss_pred CeeCCCCCceeEEEeecCCC
Q 020917 284 AVIPSSGSVGMRIQYSKNPF 303 (320)
Q Consensus 284 ~~l~g~~~~~l~v~~ak~~~ 303 (320)
..+.+ +.|.|...+.+.
T Consensus 152 ~~~~~---~~i~v~~~~~~~ 168 (562)
T TIGR01628 152 MLLND---KEVYVGRFIKKH 168 (562)
T ss_pred cEecC---ceEEEecccccc
Confidence 99999 899998766553
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=3.5e-26 Score=225.42 Aligned_cols=182 Identities=18% Similarity=0.254 Sum_probs=139.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeC-cCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFD-AETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~-~~~gr~l~v 122 (320)
...++|||+||+.++|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|+|..+. ...|+.|.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999954443333322 23699999999999999999999999995 112588888
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.++..+...... .+....... .
T Consensus 256 ~~a~~k~er~~~-----------~~~~~~~~~----~------------------------------------------- 277 (562)
T TIGR01628 256 GRAQKRAEREAE-----------LRRKFEELQ----Q------------------------------------------- 277 (562)
T ss_pred ecccChhhhHHH-----------HHhhHHhhh----h-------------------------------------------
Confidence 887654332100 000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~ 279 (320)
........++|||+||++.+|+++|+++|++||.|.+++++.+.+ +|||||+|.+.++|.+|+.
T Consensus 278 -------------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~ 344 (562)
T TIGR01628 278 -------------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVT 344 (562)
T ss_pred -------------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHH
Confidence 000011257899999999999999999999999999999987642 7999999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeecCC
Q 020917 280 NLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 280 ~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.|||+.|.| ++|+|.|++.+
T Consensus 345 ~~~g~~~~g---k~l~V~~a~~k 364 (562)
T TIGR01628 345 EMHGRMLGG---KPLYVALAQRK 364 (562)
T ss_pred HhcCCeeCC---ceeEEEeccCc
Confidence 999999999 99999999875
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.1e-26 Score=204.75 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=137.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccc-cEEEeeC---CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVNYKG---EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~-~iv~~~~---~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.-+||||-+|..++|+|||++|++|+.++. .|++.|. ++|||||.|.+.++|.+|+.+|+.+.....--.++.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44678999999999999999999999955443 3344432 4699999999999999999999988864322478999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.||...+...
T Consensus 112 k~Ad~E~er~---------------------------------------------------------------------- 121 (510)
T KOG0144|consen 112 KYADGERERI---------------------------------------------------------------------- 121 (510)
T ss_pred cccchhhhcc----------------------------------------------------------------------
Confidence 8885432211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~ 279 (320)
...+.|||+-|++.+||+|++++|++||.|++|+|+++.. ||||||+|.+.+.|..||+
T Consensus 122 ------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 122 ------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred ------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHH
Confidence 0146799999999999999999999999999999998665 9999999999999999999
Q ss_pred HhCCCe-eCCCCCceeEEEeecCC
Q 020917 280 NLQGAV-IPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 280 ~lnG~~-l~g~~~~~l~v~~ak~~ 302 (320)
+|||.. +.|.. .+|.|.|+...
T Consensus 184 a~ng~~tmeGcs-~PLVVkFADtq 206 (510)
T KOG0144|consen 184 ALNGTQTMEGCS-QPLVVKFADTQ 206 (510)
T ss_pred hhccceeeccCC-CceEEEecccC
Confidence 999974 55532 69999999766
No 16
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=197.90 Aligned_cols=150 Identities=20% Similarity=0.320 Sum_probs=135.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccccc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
-+|||||||..+++.+|+.||+.| |+|+...--|+||||+.++...|+.|+..|+|.+++ |..|.|+-+++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~y----gkVlECDIvKNYgFVHiEdktaaedairNLhgYtLh---g~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQY----GKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLH---GVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhh----CceEeeeeecccceEEeecccccHHHHhhcccceec---ceEEEEEeccccC
Confidence 369999999999999999999999 666554333589999999999999999999999998 8999999887652
Q ss_pred ccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (320)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (320)
.
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
.+++|+|+||.+.++.+||+..|++||.|.+++|++ +|+||+|+-.++|..|++.|+|++|.|
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~g- 139 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQG- 139 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhccccccccc-
Confidence 256799999999999999999999999999999996 799999999999999999999999999
Q ss_pred CCceeEEEeecCCCC
Q 020917 290 GSVGMRIQYSKNPFG 304 (320)
Q Consensus 290 ~~~~l~v~~ak~~~~ 304 (320)
++|+|+++.++..
T Consensus 140 --k~m~vq~stsrlr 152 (346)
T KOG0109|consen 140 --KRMHVQLSTSRLR 152 (346)
T ss_pred --ceeeeeeeccccc
Confidence 9999999987754
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=6.6e-25 Score=214.00 Aligned_cols=188 Identities=18% Similarity=0.174 Sum_probs=134.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
.++.++|||+|||..+|+++|+++|+.|+.+....+... .++|||||+|.+.++|..|++.|||..|+ |+.|+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~~l~ 368 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DNKLH 368 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 356789999999999999999999999955444333221 24699999999999999999999999998 79999
Q ss_pred EEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
|.++.............+ ... . ...
T Consensus 369 v~~a~~~~~~~~~~~~~~--------------------~~~--~-----------~~~---------------------- 393 (509)
T TIGR01642 369 VQRACVGANQATIDTSNG--------------------MAP--V-----------TLL---------------------- 393 (509)
T ss_pred EEECccCCCCCCcccccc--------------------ccc--c-----------ccc----------------------
Confidence 999964322110000000 000 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCC--C--------CHHHHHHhhccCCCeeEEEEEecC-------CcceE
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGES--I--------NEEELRGLFSAQPGFKQMKVLRQE-------RHTVC 264 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~--~--------tee~L~~~F~~~G~i~~v~i~~~~-------~~g~a 264 (320)
..............++.+|+|.||... + ..++|+++|++||.|++|+|.++. ..|++
T Consensus 394 ------~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~ 467 (509)
T TIGR01642 394 ------AKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKV 467 (509)
T ss_pred ------cccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceE
Confidence 000000000011235789999999632 1 126899999999999999998642 25899
Q ss_pred EEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 265 FIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 265 FV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
||+|.++++|.+|+.+|||+.|.| +.|.|.|..
T Consensus 468 fV~F~~~e~A~~A~~~lnGr~~~g---r~v~~~~~~ 500 (509)
T TIGR01642 468 FLEYADVRSAEKAMEGMNGRKFND---RVVVAAFYG 500 (509)
T ss_pred EEEECCHHHHHHHHHHcCCCEECC---eEEEEEEeC
Confidence 999999999999999999999999 999999954
No 18
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.7e-25 Score=188.38 Aligned_cols=272 Identities=19% Similarity=0.261 Sum_probs=169.0
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHh
Q 020917 31 PPPPPVPYDNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDAL 107 (320)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~l 107 (320)
.++..+.|+..++.. .+.|+||||-|...-.|||+|.+|..|+.++.|.+.. ..+||||||.|.+..+|..||+.|
T Consensus 2 nrpiqvkpadsesrg-~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG-GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCC-ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHh
Confidence 345566666655422 3678999999999999999999999998877776554 246899999999999999999999
Q ss_pred cCceeCcCCCCeEEEEEcccccc--cccCCccCC--ccc---------------------------------cc------
Q 020917 108 QEMIFDAETKSVLHTEMAKKNLF--VKRGIVADT--NAY---------------------------------DQ------ 144 (320)
Q Consensus 108 ng~~~~~~~gr~l~v~~a~~~~~--~~~~~~~~~--~~~---------------------------------~~------ 144 (320)
+|..-.......|.|.|+...+. ..|...+.+ +.+ ..
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~ 160 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAA 160 (371)
T ss_pred cccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHH
Confidence 99876443358999999976643 122111100 000 00
Q ss_pred --------cccccCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCC
Q 020917 145 --------SKRLRTGGDYTHTGYSAPSPFHAPP------APVWGPHGYMAPPPPPY----------DPYGGYGVPPVQMP 200 (320)
Q Consensus 145 --------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 200 (320)
...............+...+..... ....+..++..-++.+. +.+..|+..++...
T Consensus 161 ~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va 240 (371)
T KOG0146|consen 161 AQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVA 240 (371)
T ss_pred HHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCcccc
Confidence 0000000000001111111100000 01111222211111111 11222222221111
Q ss_pred CCCCC----------CCCCCCCCC------------CCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEec
Q 020917 201 APAPV----------PAPSSYVPV------------QNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ 258 (320)
Q Consensus 201 ~~~~~----------~~~~~~~~~------------~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~ 258 (320)
.+... ..++.+.+. +-...++..+.|||..||.+..+.||.++|-.||.|++.++.-+
T Consensus 241 ~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvD 320 (371)
T KOG0146|consen 241 DPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVD 320 (371)
T ss_pred chhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeeh
Confidence 11000 001111111 11224566899999999999999999999999999999888643
Q ss_pred ----CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCCC
Q 020917 259 ----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGKR 306 (320)
Q Consensus 259 ----~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~~~~ 306 (320)
.+|.|+||.|+++.+|+.||.+|||+.|+. |+|||++.|.+.++|
T Consensus 321 RATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM---KRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 321 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM---KRLKVQLKRPKDANR 369 (371)
T ss_pred hccccccceeeEecCCchhHHHHHHHhcchhhhh---hhhhhhhcCccccCC
Confidence 348999999999999999999999999999 999999999997766
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=2.3e-24 Score=207.52 Aligned_cols=240 Identities=15% Similarity=0.194 Sum_probs=139.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.++|||+|||..+|+++|+++|+.|+.+....+... ..+|||||+|.+.++|.+|++.|||..|. |+.|+|.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~---g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA---GRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC---CEEEEEEE
Confidence 789999999999999999999999944333222221 23699999999999999999999999998 89999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPY-----DPYGGYGVPPVQM 199 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 199 (320)
+.......... .................. .... . ...........+....++... ..+..........
T Consensus 263 a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (457)
T TIGR01622 263 AQDSTYLLDAA---NTFEDIDKQQQMGKNLNT--EERE-Q-LMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNI 335 (457)
T ss_pred ccCCCccccch---hhhccccccccCCcCCCc--cchH-H-HHHhhccCCCCccccCCCccchhhhhccccccccccccc
Confidence 87432211100 000000000000000000 0000 0 000000000000000000000 0000000000000
Q ss_pred CC---CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCC----------HHHHHHhhccCCCeeEEEEEecCCcceEEE
Q 020917 200 PA---PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESIN----------EEELRGLFSAQPGFKQMKVLRQERHTVCFI 266 (320)
Q Consensus 200 ~~---~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~t----------ee~L~~~F~~~G~i~~v~i~~~~~~g~aFV 266 (320)
+. ....................+..+|+|.||....+ .+||+++|++||.|++|.|......|++||
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV 415 (457)
T TIGR01622 336 PSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYL 415 (457)
T ss_pred cccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEE
Confidence 00 00000000000001111234578999999965544 268999999999999999986666899999
Q ss_pred EEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 267 EFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 267 ~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
+|.++++|..|+++|||+.|+| +.|.|.|...
T Consensus 416 ~F~~~e~A~~A~~~lnGr~f~g---r~i~~~~~~~ 447 (457)
T TIGR01622 416 KFSSVDAALAAFQALNGRYFGG---KMITAAFVVN 447 (457)
T ss_pred EECCHHHHHHHHHHhcCcccCC---eEEEEEEEcH
Confidence 9999999999999999999999 9999999643
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=3.3e-25 Score=178.16 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=135.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.+...||||+||+..++++-|.+||-.. |.||.+. ..+|||||+|.++|+|+-|++.||.+.++ |
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqa----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---g 78 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQA----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---G 78 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhc----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---C
Confidence 4667899999999999999999999999 8887762 13599999999999999999999999999 8
Q ss_pred CeEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (320)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (320)
|+|+|.-+......
T Consensus 79 rpIrv~kas~~~~n------------------------------------------------------------------ 92 (203)
T KOG0131|consen 79 RPIRVNKASAHQKN------------------------------------------------------------------ 92 (203)
T ss_pred ceeEEEeccccccc------------------------------------------------------------------
Confidence 99999877410000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEE-EEEecC----CcceEEEEEcCHH
Q 020917 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQM-KVLRQE----RHTVCFIEFEDVN 272 (320)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v-~i~~~~----~~g~aFV~F~~~~ 272 (320)
...+..|||+||.++++|..|.+.|+.||.+.+. +++++. .+||+||.|.+.+
T Consensus 93 ----------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 93 ----------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ----------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 0014679999999999999999999999987653 444433 2789999999999
Q ss_pred HHHHHHHHhCCCeeCCCCCceeEEEeecCCCC
Q 020917 273 SASSVHHNLQGAVIPSSGSVGMRIQYSKNPFG 304 (320)
Q Consensus 273 ~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~~ 304 (320)
.+.+|+..|||.-+.+ +++.|+|++.+..
T Consensus 151 asd~ai~s~ngq~l~n---r~itv~ya~k~~~ 179 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCN---RPITVSYAFKKDT 179 (203)
T ss_pred HHHHHHHHhccchhcC---CceEEEEEEecCC
Confidence 9999999999999999 8999999988833
No 21
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.92 E-value=9e-24 Score=176.29 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=149.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHH----HhhhCCCccccEEEe---eC--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQN----LLRWLPGYEASQVNY---KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~----lF~~~~~~~~~iv~~---~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.++.||||.||++.+..++|+. ||+.| |.|+.+ ++ .||.|||.|.+.+.|..|+..|+|..|+ |
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy---g 79 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY---G 79 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc---C
Confidence 4567999999999999999998 88888 777665 33 4699999999999999999999999999 8
Q ss_pred CeEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 118 SVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPV 197 (320)
Q Consensus 118 r~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (320)
++++|.||+.++...... .+...+..++.+........ .+....+....|. .+.+
T Consensus 80 K~mriqyA~s~sdii~~~--~~~~v~~~~k~~~~~~~~~~----------~~~~~ng~~~~~~-----~~~~-------- 134 (221)
T KOG4206|consen 80 KPMRIQYAKSDSDIIAQA--PGTFVEKEKKINGEILARIK----------QPLDTNGHFYNMN-----RMNL-------- 134 (221)
T ss_pred chhheecccCccchhhcc--CceeccccCccccccccccC----------Ccccccccccccc-----cccC--------
Confidence 999999999988755422 22333333322221111000 0000000000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHH
Q 020917 198 QMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSV 277 (320)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~A 277 (320)
++.......+++.+||+.|||.+++.+.|..+|.+|...+.|+++. ..++.|||+|.+...|..|
T Consensus 135 --------------p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~-~~~~iAfve~~~d~~a~~a 199 (221)
T KOG4206|consen 135 --------------PPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP-PRSGIAFVEFLSDRQASAA 199 (221)
T ss_pred --------------CCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc-CCCceeEEecchhhhhHHH
Confidence 0000122345789999999999999999999999999999999995 5679999999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEEeec
Q 020917 278 HHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 278 l~~lnG~~l~g~~~~~l~v~~ak 300 (320)
+++|+|..|.-. ..|+|.|++
T Consensus 200 ~~~lq~~~it~~--~~m~i~~a~ 220 (221)
T KOG4206|consen 200 QQALQGFKITKK--NTMQITFAK 220 (221)
T ss_pred hhhhccceeccC--ceEEecccC
Confidence 999999999832 799999986
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.3e-23 Score=193.62 Aligned_cols=190 Identities=18% Similarity=0.271 Sum_probs=147.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eC---CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KG---EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~---~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
..||||++||+.++.++|.++|+.++.+-.+++.. ++ .||||||.|.-.|++.+|+..+++..|. ||.|.|..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~---Gr~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE---GRILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc---ceeccccc
Confidence 38999999999999999999999997777777655 33 3699999999999999999999999998 89999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
++.+............... ....+.
T Consensus 82 A~~R~r~e~~~~~e~~~ve-------------K~~~q~------------------------------------------ 106 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVE-------------KPIEQK------------------------------------------ 106 (678)
T ss_pred ccccccchhcccccchhhh-------------cccccC------------------------------------------
Confidence 9776543310000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHh
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~l 281 (320)
.+ .-.....+..+|.|+|||+.+.+.+|+.+|++||.|.+|.|.+..+ .|||||+|.+..+|..||+.|
T Consensus 107 --~~------~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 107 --RP------TKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred --Cc------chhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhc
Confidence 00 0001112357899999999999999999999999999999976444 799999999999999999999
Q ss_pred CCCeeCCCCCceeEEEeecCCCCCCC
Q 020917 282 QGAVIPSSGSVGMRIQYSKNPFGKRK 307 (320)
Q Consensus 282 nG~~l~g~~~~~l~v~~ak~~~~~~~ 307 (320)
||.+|.| |+|.|.|+-.+....+
T Consensus 179 N~~~i~g---R~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 179 NGNKIDG---RPVAVDWAVDKDTYED 201 (678)
T ss_pred cCceecC---ceeEEeeecccccccc
Confidence 9999999 9999999877644433
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=9.9e-23 Score=187.73 Aligned_cols=237 Identities=15% Similarity=0.123 Sum_probs=141.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
+.-+|+|+|||+.+...+|+.+|+.| |.++.+ + ...|||||+|.+..+|.+||+.+||..|+ ||++
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~---gR~V 188 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNF----GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID---GRPV 188 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhc----ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec---Ccee
Confidence 46689999999999999999999999 666554 1 23599999999999999999999999999 8999
Q ss_pred EEEEcccccccccCCccCCccccccccccC----CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRT----GGDYTHTGYSA-PSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVP 195 (320)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (320)
.|.||..+..-......+...+-....... ..+........ ...-+-......+++.... .+-..-.
T Consensus 189 AVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~e--------e~~~~Ee 260 (678)
T KOG0127|consen 189 AVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFE--------EGEESEE 260 (678)
T ss_pred EEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhh--------ccccccc
Confidence 999997765422100000000000000000 00000000000 0000000000000000000 0000000
Q ss_pred CCCCCCCCC-CCCCCCCCCCCC---CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEE
Q 020917 196 PVQMPAPAP-VPAPSSYVPVQN---TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIE 267 (320)
Q Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~ 267 (320)
......+.. ..-......++. .+...-..||||+||++++||++|.++|++||.|.++.|+.+.. +|+|||.
T Consensus 261 e~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~ 340 (678)
T KOG0127|consen 261 EEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVK 340 (678)
T ss_pred cccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEE
Confidence 000000000 000000011111 12223358999999999999999999999999999999986654 8999999
Q ss_pred EcCHHHHHHHHHHh-----CC-CeeCCCCCceeEEEeecCC
Q 020917 268 FEDVNSASSVHHNL-----QG-AVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 268 F~~~~~A~~Al~~l-----nG-~~l~g~~~~~l~v~~ak~~ 302 (320)
|.+...|..||.+- .| ..|.| |.|+|..+-.+
T Consensus 341 Fkt~~~~~~ci~~Aspa~e~g~~ll~G---R~Lkv~~Av~R 378 (678)
T KOG0127|consen 341 FKTQIAAQNCIEAASPASEDGSVLLDG---RLLKVTLAVTR 378 (678)
T ss_pred eccHHHHHHHHHhcCccCCCceEEEec---cEEeeeeccch
Confidence 99999999999876 34 77888 89999987543
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=4.6e-23 Score=185.24 Aligned_cols=103 Identities=22% Similarity=0.219 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHH
Q 020917 28 AAPPPPPPVPYDNTNRIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAK 104 (320)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~ 104 (320)
++...|..+.++..++..-.+.++||||-|+..+||.|++++|++|+.++.+-|.. +.+||||||.|.+.|.|..||
T Consensus 103 pG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 103 PGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred CCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHH
Confidence 34556667777776665556689999999999999999999999997777665444 356899999999999999999
Q ss_pred HHhcCceeCcCCCCeEEEEEcccccc
Q 020917 105 DALQEMIFDAETKSVLHTEMAKKNLF 130 (320)
Q Consensus 105 ~~lng~~~~~~~gr~l~v~~a~~~~~ 130 (320)
++|||..-...|..+|.|.||..++.
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCC
Confidence 99999886555779999999987754
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=4.3e-22 Score=188.88 Aligned_cols=165 Identities=18% Similarity=0.274 Sum_probs=134.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC-------CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYKG-------EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 52 L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~-------~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
|||.||++++|.++|..+|...+.+....|..+. +.|||||+|.+.++|+.|++.|+|..++ |+.|.|.+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld---GH~l~lk~ 594 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD---GHKLELKI 594 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec---CceEEEEe
Confidence 9999999999999999999998444333333321 2399999999999999999999999999 89999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
+..+....- + +
T Consensus 595 S~~k~~~~~------g-----K---------------------------------------------------------- 605 (725)
T KOG0110|consen 595 SENKPASTV------G-----K---------------------------------------------------------- 605 (725)
T ss_pred ccCcccccc------c-----c----------------------------------------------------------
Confidence 972211000 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHH
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHN 280 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~ 280 (320)
.......++.|.|+|||+..+-.+++.+|+.||.|++|+|....+ +|||||+|-+..+|..|+++
T Consensus 606 -----------~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 606 -----------KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred -----------ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 000001257899999999999999999999999999999965312 89999999999999999999
Q ss_pred hCCCeeCCCCCceeEEEeecCC
Q 020917 281 LQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 281 lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
|.+.-|.| |.|-++|+++-
T Consensus 675 l~STHlyG---RrLVLEwA~~d 693 (725)
T KOG0110|consen 675 LGSTHLYG---RRLVLEWAKSD 693 (725)
T ss_pred hcccceec---hhhheehhccc
Confidence 99999999 99999999875
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=4.2e-20 Score=178.86 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=66.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..++|||+||+.++++++|+++|+.|+.+..+.+... ..||||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg---Gr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC---CeEEEEE
Confidence 4679999999999999999999999955444333321 24699999999999999999999999998 8999999
Q ss_pred Ecccc
Q 020917 124 MAKKN 128 (320)
Q Consensus 124 ~a~~~ 128 (320)
++...
T Consensus 280 kAi~p 284 (612)
T TIGR01645 280 KCVTP 284 (612)
T ss_pred ecCCC
Confidence 98754
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=9.4e-21 Score=175.19 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=127.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcccc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~ 128 (320)
..|||| +++||.+|.++|+.++.+....+.. .++-|||||.|.++++|++||+.||...+. |++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~---~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLK---GKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccC---CcEEEeehhccC
Confidence 369999 9999999999999994433322221 244499999999999999999999999998 899999998421
Q ss_pred cccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 129 LFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAP 208 (320)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (320)
T Consensus 76 -------------------------------------------------------------------------------- 75 (369)
T KOG0123|consen 76 -------------------------------------------------------------------------------- 75 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCee
Q 020917 209 SSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVI 286 (320)
Q Consensus 209 ~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l 286 (320)
.+.|||.||++++|.++|.+.|+.||.|++|++..+.+ +|| ||+|+++++|.+|+..|||..+
T Consensus 76 --------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 76 --------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred --------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 11299999999999999999999999999999987655 899 9999999999999999999999
Q ss_pred CCCCCceeEEEeecCC
Q 020917 287 PSSGSVGMRIQYSKNP 302 (320)
Q Consensus 287 ~g~~~~~l~v~~ak~~ 302 (320)
.+ +.|.|.....+
T Consensus 141 ~~---kki~vg~~~~~ 153 (369)
T KOG0123|consen 141 NG---KKIYVGLFERK 153 (369)
T ss_pred CC---CeeEEeeccch
Confidence 99 89999776554
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=3.4e-21 Score=178.33 Aligned_cols=235 Identities=13% Similarity=0.134 Sum_probs=137.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.+.++||||||.+++||++|+.+|+.|+.++...+.+. + .||||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA---Gr~ikV 352 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA---GRLIKV 352 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec---CceEEE
Confidence 45556999999999999999999999955555444442 2 4699999999999999999999998887 899999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSA-PSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
......-...... ....+.+. .......-+... .+..... ++..+.+. + ......+-...........
T Consensus 353 ~~v~~r~~~~~a~---~~~~d~D~---~d~~gl~~~~~g~~Ql~~kl-a~~~~~~~---~-s~~~~~l~~~~~~~~~~~~ 421 (549)
T KOG0147|consen 353 SVVTERVDTKEAA---VTQFDFDE---DDRQGLSLGSGGRNQLMAKL-AEGKGRSL---P-STAISALLLLAKLASAAQF 421 (549)
T ss_pred EEeeeeccccccc---ccccccch---hhccccccccccHHHHHHHH-hccCCccc---c-chhhhHHHhccccchHHhh
Confidence 8765543322110 00000000 000000000000 0000000 00000000 0 0000000000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCH----------HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCH
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINE----------EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV 271 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~te----------e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~ 271 (320)
..........++........++.+|.++||....+| ||+++.|.+||+|.+|.+.++. -|+.||.|.+.
T Consensus 422 ~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-~g~VYvrc~s~ 500 (549)
T KOG0147|consen 422 NGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-AGCVYVRCPSA 500 (549)
T ss_pred cCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-CceEEEecCcH
Confidence 000000000000001111156788999999765444 7899999999999999997543 49999999999
Q ss_pred HHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 272 NSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 272 ~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
+.|..|+++|||++|.| |.|.+.|-
T Consensus 501 ~~A~~a~~alhgrWF~g---r~Ita~~~ 525 (549)
T KOG0147|consen 501 EAAGTAVKALHGRWFAG---RMITAKYL 525 (549)
T ss_pred HHHHHHHHHHhhhhhcc---ceeEEEEe
Confidence 99999999999999999 99999984
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.8e-20 Score=164.12 Aligned_cols=166 Identities=11% Similarity=0.233 Sum_probs=133.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEe--e----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY--K----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~--~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
-++||||.+.+.+.|+.||..|..| |.| |.| . ..||||||+|+-+|.|..|++.|||..+. ||.|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PF----GPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG---GRNi 185 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPF----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNI 185 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCC----CCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc---Cccc
Confidence 3789999999999999999999999 666 333 1 23699999999999999999999999998 8999
Q ss_pred EEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (320)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (320)
+|....+--.. .-..+..
T Consensus 186 KVgrPsNmpQA-------QpiID~v------------------------------------------------------- 203 (544)
T KOG0124|consen 186 KVGRPSNMPQA-------QPIIDMV------------------------------------------------------- 203 (544)
T ss_pred cccCCCCCccc-------chHHHHH-------------------------------------------------------
Confidence 98733110000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHH
Q 020917 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASS 276 (320)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~ 276 (320)
......-++|||..++++++|+||+++|..||+|++|.+.+..+ |||+||+|.+..+...
T Consensus 204 ----------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 204 ----------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred ----------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 00111247899999999999999999999999999999987554 8999999999999999
Q ss_pred HHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 277 VHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 277 Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
|+..||=+.|+| .-|+|.-+-.+
T Consensus 268 AiasMNlFDLGG---QyLRVGk~vTP 290 (544)
T KOG0124|consen 268 AIASMNLFDLGG---QYLRVGKCVTP 290 (544)
T ss_pred Hhhhcchhhccc---ceEecccccCC
Confidence 999999999999 89999877655
No 30
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=3.6e-18 Score=152.92 Aligned_cols=190 Identities=20% Similarity=0.240 Sum_probs=142.3
Q ss_pred cceEEEcCCCCC-CCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~-~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
+..|.|.||..+ +|.+.|..||..| |.|.+++ +.+-.|+|+|.|...|..||+.|+|..|+ ||.|+|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvY----GdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVY----GDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhh----cceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceec---CceEEEee
Confidence 689999999865 9999999999999 8887774 45689999999999999999999999999 79999999
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
++...-... .++. ..+++...... ++.++...
T Consensus 370 SKH~~vqlp----~egq--------~d~glT~dy~~--spLhrfkk---------------------------------- 401 (492)
T KOG1190|consen 370 SKHTNVQLP----REGQ--------EDQGLTKDYGN--SPLHRFKK---------------------------------- 401 (492)
T ss_pred ccCccccCC----CCCC--------ccccccccCCC--CchhhccC----------------------------------
Confidence 987654221 0000 00011111000 00000000
Q ss_pred CCCCCCCCCCCC-CCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCC
Q 020917 205 VPAPSSYVPVQN-TKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (320)
Q Consensus 205 ~~~~~~~~~~~~-~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG 283 (320)
+..++ ....+|+.+|.+.|+|..++||||+.+|...|...+....-.+++.++.+.+.++|+|..|+..||+
T Consensus 402 -------pgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 402 -------PGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred -------cccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhcccccc
Confidence 00111 1233568899999999999999999999999976554444356788999999999999999999999
Q ss_pred CeeCCCCCceeEEEeecCC
Q 020917 284 AVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 284 ~~l~g~~~~~l~v~~ak~~ 302 (320)
+.++++ ..|||+|+|+.
T Consensus 475 h~lgen--~hlRvSFSks~ 491 (492)
T KOG1190|consen 475 HYLGEN--HHLRVSFSKST 491 (492)
T ss_pred ccCCCC--ceEEEEeeccc
Confidence 999985 69999999863
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.4e-19 Score=154.05 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=72.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+.-+||+.|..+++.|+|++.|.+||+|.+.+|++|.. |||+||.|.+.++|+.||+.|||..|++ |.||-+|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~---R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR---RTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc---ceeeccc
Confidence 45699999999999999999999999999999998754 8999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
+..+
T Consensus 139 ATRK 142 (321)
T KOG0148|consen 139 ATRK 142 (321)
T ss_pred cccC
Confidence 8655
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.5e-18 Score=138.82 Aligned_cols=169 Identities=18% Similarity=0.233 Sum_probs=127.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCC---cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGE---KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~---kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
...++|||+|||.++.|.||.+||.+| +.|..+ |.. -.||||+|++..+|+.|+..-+|.+++ |..|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLR 76 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLR 76 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC---cceEE
Confidence 346899999999999999999999999 888444 433 389999999999999999999999998 89999
Q ss_pred EEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
|+++..-..... ..+. +.....+ .++.-..-.
T Consensus 77 VEfprggr~s~~----~~G~------------y~gggrg-----------Ggg~gg~rg--------------------- 108 (241)
T KOG0105|consen 77 VEFPRGGRSSSD----RRGS------------YSGGGRG-----------GGGGGGRRG--------------------- 108 (241)
T ss_pred EEeccCCCcccc----cccc------------cCCCCCC-----------CCCCCcccC---------------------
Confidence 999965432111 0000 0000000 000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
++ +-....++.|++||...+|+||++.+.+.|.|+...+.++ |++.|+|...|+..=|+..|
T Consensus 109 ----------pp-----srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~l 170 (241)
T KOG0105|consen 109 ----------PP-----SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKL 170 (241)
T ss_pred ----------Cc-----ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhh
Confidence 00 0112467999999999999999999999999999999875 78999999999999999999
Q ss_pred CCCeeCC
Q 020917 282 QGAVIPS 288 (320)
Q Consensus 282 nG~~l~g 288 (320)
....+..
T Consensus 171 d~~~~~s 177 (241)
T KOG0105|consen 171 DDQKFRS 177 (241)
T ss_pred ccccccC
Confidence 8888764
No 33
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.78 E-value=1e-17 Score=149.98 Aligned_cols=217 Identities=19% Similarity=0.190 Sum_probs=143.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..--+++|+|+-+.++.|-|..+|++| |.|+++ |+..-.|+|+|.|.++|..|..+|+|..|++.| +.|+|
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~f----G~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrI 222 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKF----GFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRI 222 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhc----ceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCce-eEEEe
Confidence 345678999999999999999999999 777665 344477999999999999999999999997633 79999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
.|++...-..+ +..++.+....-....+...+.- ... .....+ ..+ ....
T Consensus 223 d~Sklt~LnvK--------ynndkSRDyTnp~LP~gd~~p~l-~~~------------------~~aa~~-~~~--~~~g 272 (492)
T KOG1190|consen 223 DFSKLTDLNVK--------YNNDKSRDYTNPDLPVGDGQPSL-DQL------------------MAAAFG-SVP--AVHG 272 (492)
T ss_pred ehhhcccceee--------ccccccccccCCCCCCCcccccc-chh------------------hhcccc-ccc--cccC
Confidence 99976543221 11111111110000011000000 000 000000 000 0000
Q ss_pred CCCCCCCCCC----CCCCCCCCCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHH
Q 020917 203 APVPAPSSYV----PVQNTKDNPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSV 277 (320)
Q Consensus 203 ~~~~~~~~~~----~~~~~~~~~~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~A 277 (320)
.+...++... ..........+++|.|.||.. .+|.+-|..+|+-||.|.+|+|..++ +.-|.|+|.|...|+-|
T Consensus 273 ~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-kd~ALIQmsd~~qAqLA 351 (492)
T KOG1190|consen 273 APLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-KDNALIQMSDGQQAQLA 351 (492)
T ss_pred CcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-CcceeeeecchhHHHHH
Confidence 1111111100 000000111268899999975 59999999999999999999999754 47899999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEEeecCC
Q 020917 278 HHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 278 l~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
+..|+|..+.| ++|+|.|+|..
T Consensus 352 ~~hL~g~~l~g---k~lrvt~SKH~ 373 (492)
T KOG1190|consen 352 MEHLEGHKLYG---KKLRVTLSKHT 373 (492)
T ss_pred HHHhhcceecC---ceEEEeeccCc
Confidence 99999999999 99999999987
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.77 E-value=1.5e-16 Score=141.07 Aligned_cols=234 Identities=16% Similarity=0.146 Sum_probs=151.4
Q ss_pred CCCCcceEEEcCCC--CCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 45 AHDEVRTIFITGLP--DDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 45 ~~~~~~~L~V~nLp--~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
+..+++.|.+.=|+ +.+|.+.|..++... |.|+++ +.+--.|.|+|++.+.|.+|.++|||.+|+..| .+
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGC-CT 190 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGC-CT 190 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccc-ee
Confidence 34567888877776 668999998888888 777554 444478999999999999999999999997633 79
Q ss_pred EEEEEcccccccccCCccCCcccccccc-ccCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-----CC---CCCCCCCCC
Q 020917 120 LHTEMAKKNLFVKRGIVADTNAYDQSKR-LRTGGDYTHTGYSAPSPFHAPPAPVWG--PHG-----YM---APPPPPYDP 188 (320)
Q Consensus 120 l~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~---~~~~~~~~~ 188 (320)
|+|+||++.+-.......+.+++..... .....+...-...............|+ ..+ +. .++|+.+..
T Consensus 191 LKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~ 270 (494)
T KOG1456|consen 191 LKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRD 270 (494)
T ss_pred EEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcc
Confidence 9999999987532222223344433211 111111111001000000000001111 011 11 111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCC-CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEE
Q 020917 189 YGGYGVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE-SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIE 267 (320)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~-~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~ 267 (320)
-...+.. . .......+.+++.|.+|+. .++.+.|..+|+.||.|.+|++++ ...|.|.|+
T Consensus 271 ~~~~~~g---------~---------a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVe 331 (494)
T KOG1456|consen 271 GYRDGRG---------Y---------ASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVE 331 (494)
T ss_pred ccccCCC---------C---------CCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEE
Confidence 1110100 0 0012334578999999975 488999999999999999999997 346899999
Q ss_pred EcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCCC
Q 020917 268 FEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFGK 305 (320)
Q Consensus 268 F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~~~ 305 (320)
+.|....++|+..|||-.+-| .+|.|-++|..+-.
T Consensus 332 mgd~~aver~v~hLnn~~lfG---~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 332 MGDAYAVERAVTHLNNIPLFG---GKLNVCVSKQNFVS 366 (494)
T ss_pred cCcHHHHHHHHHHhccCcccc---ceEEEeeccccccc
Confidence 999999999999999999999 89999999887543
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=6.7e-18 Score=156.28 Aligned_cols=162 Identities=19% Similarity=0.336 Sum_probs=133.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccccc
Q 020917 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 52 L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
|||.||+++++.++|.++|+.|+.+.+|-+.. .+++|| ||+|.+.++|++|++.+||..+. |+.|.|.....+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~---~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN---GKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC---CCeeEEeeccchh
Confidence 99999999999999999999996666655555 356899 99999999999999999999987 7999998775543
Q ss_pred ccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (320)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (320)
...+.. .
T Consensus 155 er~~~~----~--------------------------------------------------------------------- 161 (369)
T KOG0123|consen 155 EREAPL----G--------------------------------------------------------------------- 161 (369)
T ss_pred hhcccc----c---------------------------------------------------------------------
Confidence 322100 0
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCee
Q 020917 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVI 286 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l 286 (320)
. ....-+.+||.|++.++++++|.+.|+.||.|.++.++.+.. ++|+||.|.+.++|..|+..|||..+
T Consensus 162 -------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 162 -------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred -------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcC
Confidence 0 000135689999999999999999999999999999987543 89999999999999999999999999
Q ss_pred CCCCCceeEEEeecC
Q 020917 287 PSSGSVGMRIQYSKN 301 (320)
Q Consensus 287 ~g~~~~~l~v~~ak~ 301 (320)
.+ +.+.|.-+.+
T Consensus 234 ~~---~~~~V~~aqk 245 (369)
T KOG0123|consen 234 GD---KELYVGRAQK 245 (369)
T ss_pred Cc---cceeeccccc
Confidence 97 7787776655
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=2.4e-18 Score=159.61 Aligned_cols=177 Identities=16% Similarity=0.248 Sum_probs=135.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCcc-ccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYE-ASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~-~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
+...+|||+--|...+++.+|.++|+.++.+- ..+|..+ .++|.|||+|.|.++.-.|+. |.|..+. |-+|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrll---g~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLL---GVPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCccc---CceeE
Confidence 34578999999999999999999999992221 1122222 346999999999999999995 9999998 79999
Q ss_pred EEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 122 TEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 122 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
|.......+.... ..
T Consensus 252 vq~sEaeknr~a~----~s------------------------------------------------------------- 266 (549)
T KOG0147|consen 252 VQLSEAEKNRAAN----AS------------------------------------------------------------- 266 (549)
T ss_pred ecccHHHHHHHHh----cc-------------------------------------------------------------
Confidence 9876433221100 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHH
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSV 277 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~A 277 (320)
..........|-..|||+||++++++++|+.+|..||.|..|.+..+. .+||+||+|.+.++|.+|
T Consensus 267 ----------~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 267 ----------PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred ----------ccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 000000011123449999999999999999999999999999998763 389999999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEEeecCCCC
Q 020917 278 HHNLQGAVIPSSGSVGMRIQYSKNPFG 304 (320)
Q Consensus 278 l~~lnG~~l~g~~~~~l~v~~ak~~~~ 304 (320)
+..|||++|.| +.|+|.....+..
T Consensus 337 ~e~lngfelAG---r~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 337 LEQLNGFELAG---RLIKVSVVTERVD 360 (549)
T ss_pred HHHhccceecC---ceEEEEEeeeecc
Confidence 99999999999 9999998665544
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.7e-17 Score=133.16 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=72.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+++|||+||+.+++|++|+++|.+||.|.+++|+.+. .+|||||+|.+.++|+.|++.|||..|.| +.|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G---r~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG---RHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC---EEEEEE
Confidence 36789999999999999999999999999999998654 38999999999999999999999999999 999999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|++.+
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98765
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=5.4e-16 Score=147.79 Aligned_cols=203 Identities=19% Similarity=0.214 Sum_probs=132.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
.+.++|+|||..+..++|..+|..| |.|.++ ...---++|+|.+..+|++|...|....+. ..+|.++|+-
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~f----G~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k---~~plyle~aP 457 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRF----GEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFK---SAPLYLEWAP 457 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcc----cccceeecCcccceeeeeecCccchHHHHHHhchhhhc---cCccccccCh
Confidence 5789999999999999999999999 666444 111134999999999999999999999887 3788888875
Q ss_pred cccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 127 KNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVP 206 (320)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (320)
........ +........+............... +.. .......
T Consensus 458 ~dvf~~~p---ka~~~~~e~~~~~ee~~~Er~s~~d-----------~~v-----------------------~eD~d~t 500 (725)
T KOG0110|consen 458 EDVFTEDP---KADDLSAESRSKMEENPSERVSAED-----------GQV-----------------------EEDKDPT 500 (725)
T ss_pred hhhccCCc---cccccccccccccccCcceeccccc-----------ccc-----------------------cccCCcc
Confidence 44322100 0000000000000000000000000 000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-------cceEEEEEcCHHHHHHHHH
Q 020917 207 APSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~ 279 (320)
..+ ............++|||.||.++++.++|..+|.++|.|+++.|....+ .|||||+|.+.++|+.|++
T Consensus 501 e~s--s~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k 578 (725)
T KOG0110|consen 501 EES--SLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALK 578 (725)
T ss_pred ccc--cchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHH
Confidence 000 0000011111123399999999999999999999999999998865443 4999999999999999999
Q ss_pred HhCCCeeCCCCCceeEEEeec
Q 020917 280 NLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 280 ~lnG~~l~g~~~~~l~v~~ak 300 (320)
+|+|..|+| +.|.|.++.
T Consensus 579 ~lqgtvldG---H~l~lk~S~ 596 (725)
T KOG0110|consen 579 ALQGTVLDG---HKLELKISE 596 (725)
T ss_pred HhcCceecC---ceEEEEecc
Confidence 999999999 999999998
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.67 E-value=4.4e-15 Score=130.86 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=132.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE------EEe-e----CCcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ------VNY-K----GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i------v~~-~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
..-+..|||+|||.++|.+++.++|++++.+...+ +++ + ..||=|++.|--.|+.+.|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r- 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR- 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc-
Confidence 34567799999999999999999999994443222 222 1 23699999999999999999999999998
Q ss_pred CCCCeEEEEEcccccccccCCccCC--ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 115 ETKSVLHTEMAKKNLFVKRGIVADT--NAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGY 192 (320)
Q Consensus 115 ~~gr~l~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (320)
|+.|+|+.|+-...-......+. ...+. ++......... .+....
T Consensus 210 --g~~~rVerAkfq~Kge~~~~~k~k~k~~~~-kk~~k~q~k~~----------------dw~pd~-------------- 256 (382)
T KOG1548|consen 210 --GKKLRVERAKFQMKGEYDASKKEKGKCKDK-KKLKKQQQKLL----------------DWRPDR-------------- 256 (382)
T ss_pred --CcEEEEehhhhhhccCcCcccccccccccH-HHHHHHHHhhc----------------ccCCCc--------------
Confidence 89999999865543111000000 00000 00000000000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCC----CCC-------HHHHHHhhccCCCeeEEEEEecCCc
Q 020917 193 GVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGE----SIN-------EEELRGLFSAQPGFKQMKVLRQERH 261 (320)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~----~~t-------ee~L~~~F~~~G~i~~v~i~~~~~~ 261 (320)
....-....++|.|+||.. +.+ .+||++.|.+||.|.+|.|......
T Consensus 257 ----------------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd 314 (382)
T KOG1548|consen 257 ----------------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD 314 (382)
T ss_pred ----------------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC
Confidence 0000111268899999962 333 3678889999999999999754457
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 262 TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 262 g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
|.+-|.|.+.++|..|++.|+|+.|.| |.|..+..
T Consensus 315 GvvtV~f~n~eeA~~ciq~m~GR~fdg---Rql~A~i~ 349 (382)
T KOG1548|consen 315 GVVTVSFRNNEEADQCIQTMDGRWFDG---RQLTASIW 349 (382)
T ss_pred ceeEEEeCChHHHHHHHHHhcCeeecc---eEEEEEEe
Confidence 999999999999999999999999999 88887763
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.67 E-value=2.9e-16 Score=140.77 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=129.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
+.++|||++|++++++|.|++-|+.|+.+..|+++.. .++||+||+|.+.+...++|. ..-+.++ |+.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~d---gr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLD---GRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccC---Cccccce
Confidence 6789999999999999999999999966666665542 346999999999999999986 3355566 7888777
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
-+.+.....+. .
T Consensus 81 ~av~r~~~~~~-----~--------------------------------------------------------------- 92 (311)
T KOG4205|consen 81 RAVSREDQTKV-----G--------------------------------------------------------------- 92 (311)
T ss_pred eccCccccccc-----c---------------------------------------------------------------
Confidence 66544321110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHH
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~ 279 (320)
.......|||++|+.++++++|++.|.+||.|..+.++.+.. +||+||.|.++++..+++
T Consensus 93 ---------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~- 156 (311)
T KOG4205|consen 93 ---------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT- 156 (311)
T ss_pred ---------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-
Confidence 000257899999999999999999999999998888876554 899999999999998887
Q ss_pred HhCCCeeCCCCCceeEEEeecCC
Q 020917 280 NLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 280 ~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
......|.+ +.+.|.-+..+
T Consensus 157 ~~~f~~~~g---k~vevkrA~pk 176 (311)
T KOG4205|consen 157 LQKFHDFNG---KKVEVKRAIPK 176 (311)
T ss_pred ccceeeecC---ceeeEeeccch
Confidence 477888888 77777776555
No 41
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.5e-16 Score=131.51 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=125.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccccc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
..||||+||+.+.+++|..+|..| +.+..+.-..||+||+|.|..+|+.|+..|||..|. |..+.|+|+....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~y----g~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~---~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGY----GKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELC---GERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhc----cccccceeecccceeccCchhhhhcccchhcCceec---ceeeeeecccccc
Confidence 469999999999999999999999 666443322489999999999999999999999997 5558999986432
Q ss_pred ccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (320)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (320)
.-. +. ...+ .... | ...+.
T Consensus 75 ~~~------g~----------------~~~g-----~r~~---~-~~~~~------------------------------ 93 (216)
T KOG0106|consen 75 RGR------GR----------------PRGG-----DRRS---D-SRRYR------------------------------ 93 (216)
T ss_pred ccc------CC----------------CCCC-----Cccc---h-hhccC------------------------------
Confidence 100 00 0000 0000 0 00000
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
......++|+|.|+.-.+.+.+|.+.|+++|.+....+. .+++||+|.+.++|.+|+..|+|..+.+
T Consensus 94 --------~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~----~~~~~v~Fs~~~da~ra~~~l~~~~~~~- 160 (216)
T KOG0106|consen 94 --------PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR----RNFAFVEFSEQEDAKRALEKLDGKKLNG- 160 (216)
T ss_pred --------CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh----ccccceeehhhhhhhhcchhccchhhcC-
Confidence 001136789999999999999999999999999655553 4789999999999999999999999999
Q ss_pred CCceeEEEe
Q 020917 290 GSVGMRIQY 298 (320)
Q Consensus 290 ~~~~l~v~~ 298 (320)
+.|.+.+
T Consensus 161 --~~l~~~~ 167 (216)
T KOG0106|consen 161 --RRISVEK 167 (216)
T ss_pred --ceeeecc
Confidence 8999855
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=2.8e-15 Score=121.38 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=69.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 43 RIAHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 43 ~~~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
+......++|||+||+.++||++|+++|+.|+.+..+.+... ..+|||||+|.+.++|++|++.|||..|. |+
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~---Gr 104 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN---GR 104 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CE
Confidence 334566889999999999999999999999944433333321 24699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020917 119 VLHTEMAKKNLF 130 (320)
Q Consensus 119 ~l~v~~a~~~~~ 130 (320)
.|+|+|+..+..
T Consensus 105 ~l~V~~a~~~~~ 116 (144)
T PLN03134 105 HIRVNPANDRPS 116 (144)
T ss_pred EEEEEeCCcCCC
Confidence 999999976543
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.6e-15 Score=107.09 Aligned_cols=67 Identities=34% Similarity=0.577 Sum_probs=62.7
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 226 LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
|||+|||.++++++|+++|++||.|..+++..+. .+++|||+|.+.++|.+|++.|||..+.| +.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~---~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING---RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc---cCcC
Confidence 7999999999999999999999999999998752 28999999999999999999999999999 7875
No 44
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.60 E-value=7.5e-15 Score=136.72 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=66.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...++|||+|||+++++++|+++|+.|+.+....|... ..||||||+|.+.++|.+||+.|||..|+ ||.|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~---gr~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG---NRVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 45678999999999999999999999954443333221 24699999999999999999999999998 899999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|...+
T Consensus 344 ~~~~~~ 349 (352)
T TIGR01661 344 SFKTNK 349 (352)
T ss_pred EEccCC
Confidence 999765
No 45
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=3.4e-15 Score=137.58 Aligned_cols=81 Identities=17% Similarity=0.396 Sum_probs=74.1
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
.....++|||+|||.++||++|+++|+.||.|++|+|+++.. +|||||+|.++++|.+||+.|||..|.+ ++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g---r~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN---KRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC---cee
Confidence 334578999999999999999999999999999999987543 7999999999999999999999999999 999
Q ss_pred EEEeecCC
Q 020917 295 RIQYSKNP 302 (320)
Q Consensus 295 ~v~~ak~~ 302 (320)
+|.|++..
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998764
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.60 E-value=6.2e-14 Score=126.88 Aligned_cols=236 Identities=15% Similarity=0.210 Sum_probs=137.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhC-CCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWL-PGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~-~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...|.+||+|||+++.|++|++||... +.++-+-+-+. ..||||.|+|+++|.+++|++.||.+.+. ||+|+|
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR~l~v 118 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GRELVV 118 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---CceEEE
Confidence 345679999999999999999999988 33333334442 24699999999999999999999999998 899999
Q ss_pred EEcccccccccCCcc-CCc-cccccccccCC-CCCCCCCC------CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVA-DTN-AYDQSKRLRTG-GDYTHTGY------SAPSPFHAP-PAPVWGPHGYMAPPPPPYDPYGGY 192 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 192 (320)
.-........+.+.. ++. .+-.....+.. ........ ......... .........+....-. ...|..|
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~-~~~~~lf 197 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNN-SSNYNLF 197 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccccccccc-chhhhcc
Confidence 755443222111100 000 00000000000 00000000 000000000 0000000000000000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEc
Q 020917 193 GVPPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFE 269 (320)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~ 269 (320)
.. . ..+......-.+|.+..+||.||...+..+.|++.|.-.|.|.+|.+--++. +||+.++|+
T Consensus 198 gl-------~------~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~ 264 (608)
T KOG4212|consen 198 GL-------S------ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYD 264 (608)
T ss_pred cc-------h------hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEec
Confidence 00 0 0000000112344578899999999999999999999999998887754432 899999999
Q ss_pred CHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 270 DVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 270 ~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.+-+|.+||..|++.-+.. +++.+.+.+-+
T Consensus 265 hpveavqaIsml~~~g~~~---~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 265 HPVEAVQAISMLDRQGLFD---RRMTVRLDRIP 294 (608)
T ss_pred chHHHHHHHHhhccCCCcc---ccceeeccccc
Confidence 9999999999898866665 78877776555
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=8.7e-15 Score=117.54 Aligned_cols=78 Identities=27% Similarity=0.402 Sum_probs=72.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.+.|||+||+.++++.||..+|..||.|.+|-|..+ --|||||+|+|..+|..|+..|+|..|.| ..|+|++++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG---~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICG---SRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccC---ceEEEEeecCC
Confidence 689999999999999999999999999999988763 45999999999999999999999999999 79999999877
Q ss_pred CC
Q 020917 303 FG 304 (320)
Q Consensus 303 ~~ 304 (320)
..
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 48
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.1e-14 Score=125.72 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=78.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
-++|+|+|||+..-|-||+.+|.+||.|++|.|+.+.. ||||||+|++.++|++|..+|||..+.| |+|.|..+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG---RkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG---RKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec---eEEEEeccc
Confidence 47899999999999999999999999999999987654 9999999999999999999999999999 999999998
Q ss_pred CCCCCCCCCCCC
Q 020917 301 NPFGKRKDGTNG 312 (320)
Q Consensus 301 ~~~~~~~~~~~~ 312 (320)
.+.-+++....+
T Consensus 173 arV~n~K~~v~p 184 (376)
T KOG0125|consen 173 ARVHNKKKKVLP 184 (376)
T ss_pred hhhccCCcccCC
Confidence 886666655433
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.5e-14 Score=125.44 Aligned_cols=76 Identities=18% Similarity=0.351 Sum_probs=70.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
.++|||+||++.++|++|+++|+.||.|.+|+|.++. .+|||||+|.+.++|..||. |||..|.| +.|+|+++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~g---r~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVD---QSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCC---ceEEEEeccC
Confidence 5799999999999999999999999999999998765 37999999999999999994 99999999 9999999875
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 50
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.56 E-value=2.2e-14 Score=139.08 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=65.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...++|||+||+.++|+|+|+++|+.|. .+.|.+++..++||||+|.+.++|++|++.|||..|. |+.|+|.|++
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~--~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~---Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFK--PGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELE---GSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcC--CCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEEEEcc
Confidence 3468999999999999999999999981 1233333334689999999999999999999999998 8999999997
Q ss_pred ccc
Q 020917 127 KNL 129 (320)
Q Consensus 127 ~~~ 129 (320)
+..
T Consensus 306 p~~ 308 (578)
T TIGR01648 306 PVD 308 (578)
T ss_pred CCC
Confidence 754
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=3.6e-14 Score=133.48 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=128.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.....+||++||..++++++++++..|+....--+.. ..++||||.+|.++.....|++.|||..++ ++.|.|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DKKLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc---CceeEe
Confidence 4467899999999999999999999994433322222 245799999999999999999999999998 699999
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
..|.........-. . ....+ .. +
T Consensus 364 q~A~~g~~~~~~~~---~-------------------~~~~~-------~~---~------------------------- 386 (500)
T KOG0120|consen 364 QRAIVGASNANVNF---N-------------------ISQSQ-------VP---G------------------------- 386 (500)
T ss_pred ehhhccchhccccC---C-------------------ccccc-------cc---c-------------------------
Confidence 98865433211000 0 00000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCC--CCC-CH-------HHHHHhhccCCCeeEEEEEec-C------CcceEE
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLG--ESI-NE-------EELRGLFSAQPGFKQMKVLRQ-E------RHTVCF 265 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~--~~~-te-------e~L~~~F~~~G~i~~v~i~~~-~------~~g~aF 265 (320)
.........+.++.+|.+.|+= .++ ++ |+|+..|++||.|.+|.+-++ . +-|..|
T Consensus 387 --------i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVF 458 (500)
T KOG0120|consen 387 --------IPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVF 458 (500)
T ss_pred --------chhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEE
Confidence 0000001122346777777762 111 11 678889999999999999765 2 268999
Q ss_pred EEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 266 IEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 266 V~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
|+|.+.+++++|+.+|+|+.|.+ +.+..+|
T Consensus 459 Vefas~ed~qrA~~~L~GrKF~n---RtVvtsY 488 (500)
T KOG0120|consen 459 VEFADTEDSQRAMEELTGRKFAN---RTVVASY 488 (500)
T ss_pred EEecChHHHHHHHHHccCceeCC---cEEEEEe
Confidence 99999999999999999999999 7877776
No 52
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=5.6e-13 Score=118.27 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=63.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
-.+|||..+..+.+|+||+.+|+.|+.+..|.+.. .+.|||||++|.+..+-..|+..||=+++. |.-|+|.-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG---GQyLRVGk 286 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYLRVGK 286 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc---cceEeccc
Confidence 56899999999999999999999995555555544 234699999999999999999999999988 78999876
Q ss_pred cc
Q 020917 125 AK 126 (320)
Q Consensus 125 a~ 126 (320)
+.
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 53
No 53
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.9e-14 Score=121.39 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..++|=|.||+.+++|+||++||.+||.|.++.|.+++. ||||||.|.++++|++||+.|||+-+.. =.|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~---LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN---LILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce---EEEEEE
Confidence 357899999999999999999999999999999998765 8999999999999999999999999998 799999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|+|.+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99975
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2.8e-14 Score=104.83 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=68.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
++.|||+|||+++|.|++.++|.+||.|.-|+|-... ++|.|||.|+++.+|.+|++.|+|+.+.+ +-|.|-|-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~---ryl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN---RYLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC---ceEEEEec
Confidence 7899999999999999999999999999999995433 38999999999999999999999999999 89998873
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.4e-14 Score=124.44 Aligned_cols=79 Identities=14% Similarity=0.332 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe------eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~------~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
+.+.-++|+|+|||+..-|-||+.+|++| |.|+.+ +++||||||+|++.+||++|.++|+|..+. ||
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE---GR 164 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE---GR 164 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee---ce
Confidence 44667899999999999999999999999 555443 678999999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020917 119 VLHTEMAKKNLF 130 (320)
Q Consensus 119 ~l~v~~a~~~~~ 130 (320)
+|.|+.|..+-.
T Consensus 165 kIEVn~ATarV~ 176 (376)
T KOG0125|consen 165 KIEVNNATARVH 176 (376)
T ss_pred EEEEeccchhhc
Confidence 999999876543
No 56
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.4e-14 Score=131.38 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=74.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCH--HHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDV--NSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~--~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
...+||||||.++++++||+.+|+.||.|.+|.|++..+||||||+|.+. .++.+||..|||..+.| +.|+|+-|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG---R~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG---GRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC---ceeEEeec
Confidence 46789999999999999999999999999999999877799999999987 78999999999999999 89999999
Q ss_pred cCCC
Q 020917 300 KNPF 303 (320)
Q Consensus 300 k~~~ 303 (320)
|..|
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 8775
No 57
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.5e-13 Score=97.31 Aligned_cols=67 Identities=27% Similarity=0.473 Sum_probs=60.6
Q ss_pred EEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 226 LFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 226 LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
|||+|||+.+++++|+++|+.||.|..+++..+.. +++|||+|.+.++|.+|++.++|..|.| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g---~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG---RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT---EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC---EEcC
Confidence 79999999999999999999999999999987643 7999999999999999999999999999 7774
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.2e-14 Score=107.36 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=68.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.++||||+||.+.++||+|.+||++.|.|+.|.+--++. -|||||+|.+.++|..||+-+||..|.. ++|+|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd---r~ir~D 111 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD---RPIRID 111 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc---cceeee
Confidence 479999999999999999999999999999997643332 6899999999999999999999999999 899999
Q ss_pred ee
Q 020917 298 YS 299 (320)
Q Consensus 298 ~a 299 (320)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 84
No 59
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=1.9e-13 Score=96.39 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=56.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNYK---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 52 L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
|||+|||.++|+++|+++|+.|+.+....+..+ ..++||||+|.+.++|++|++.|+|..+. |+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~---~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN---GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC---ccCcC
Confidence 799999999999999999999955533333332 12499999999999999999999999998 68775
No 60
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.9e-13 Score=114.34 Aligned_cols=94 Identities=19% Similarity=0.399 Sum_probs=82.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
...+.|.|--||.++|+|||+++|+..|+|+++++++++- -||+||.|.++++|++|+..|||..|.. |.|||
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~---KTIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN---KTIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc---ceEEE
Confidence 3467799999999999999999999999999999998765 5799999999999999999999999999 99999
Q ss_pred EeecCCCCCCCCC---CCCCCCCC
Q 020917 297 QYSKNPFGKRKDG---TNGVPPAL 317 (320)
Q Consensus 297 ~~ak~~~~~~~~~---~~~~~~~~ 317 (320)
+|++.+...=++. .-|-|--|
T Consensus 116 SyARPSs~~Ik~aNLYvSGlPktM 139 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLYVSGLPKTM 139 (360)
T ss_pred EeccCChhhhcccceEEecCCccc
Confidence 9999987666655 34444444
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.46 E-value=1.5e-13 Score=115.18 Aligned_cols=78 Identities=33% Similarity=0.536 Sum_probs=72.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHH----hhccCCCeeEEEEEecCC-cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 222 PCNTLFIGNLGESINEEELRG----LFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~----~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
++.||||.||.+.+..++|+. +|++||.|++|...+... +|-|||.|.+.+.|..|+++|+|+.|.| |+|+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG---KPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC---chhhe
Confidence 467999999999999999998 999999999999875444 9999999999999999999999999999 99999
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
+||++.
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 999887
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.2e-13 Score=109.58 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=66.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEe-eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY-KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~-~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
-.++||||||+..+++.||..+|..| +.+ |++ .+--|||||+|+|+.+|+.|+..|+|..|. |..|+|++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~c---G~r~rVE~ 81 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDIC---GSRIRVEL 81 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeecCCCceEEeccCcccHHHHHhhcCCcccc---CceEEEEe
Confidence 37899999999999999999999999 555 333 234599999999999999999999999997 89999999
Q ss_pred cccccc
Q 020917 125 AKKNLF 130 (320)
Q Consensus 125 a~~~~~ 130 (320)
++....
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 976544
No 63
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.44 E-value=3.4e-12 Score=113.67 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=127.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.++-.|.|++|-..++|.||.+.++.| |.|.-+ -..+..|.|+|+|.+.|++++..-..-.++ ..|..--++|
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~f----G~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~-i~gq~Al~Ny 103 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNF----GPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIY-IAGQQALFNY 103 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcC----CceEEEEeccccceeeeeeccccchhhheehhccCccc-ccCchhhccc
Confidence 456789999999999999999999999 887444 344689999999999999998733222221 1156666666
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
+.+++....
T Consensus 104 Stsq~i~R~----------------------------------------------------------------------- 112 (494)
T KOG1456|consen 104 STSQCIERP----------------------------------------------------------------------- 112 (494)
T ss_pred chhhhhccC-----------------------------------------------------------------------
Confidence 654432110
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEe--CCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIG--NLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~--NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
..++..++..|.+. |--..+|.|-|..+|...|.|.+|.|++ ++.-.|.|+|++.+.|++|..+||
T Consensus 113 -----------g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 113 -----------GDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred -----------CCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcc
Confidence 01112246777655 5567799999999999999999999986 455689999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020917 283 GAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 283 G~~l~g~~~~~l~v~~ak~~ 302 (320)
|..|.. ++.+|||+|+|..
T Consensus 181 GADIYs-GCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 181 GADIYS-GCCTLKIEYAKPT 199 (494)
T ss_pred cccccc-cceeEEEEecCcc
Confidence 999984 4789999999875
No 64
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=5.6e-13 Score=113.93 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=68.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
..+|||+||++.+||++|+++|+.||.|.+|+|+++.. ++||||+|.+.++|..|+ .|||..|.+ ++|.|.-..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d---~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD---QRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC---ceEEEEeCc
Confidence 57999999999999999999999999999999998754 689999999999999999 699999999 889988744
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=6.3e-13 Score=89.88 Aligned_cols=56 Identities=25% Similarity=0.486 Sum_probs=51.0
Q ss_pred HHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 240 LRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 240 L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
|+++|++||.|.++.+..+. +++|||+|.+.++|..|++.|||..+.| ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g---~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG---RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT---EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC---cEEEEEEC
Confidence 68899999999999997543 5999999999999999999999999999 99999997
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=7.6e-13 Score=92.94 Aligned_cols=70 Identities=30% Similarity=0.537 Sum_probs=64.2
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC--CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~--~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+|||+|||..+++++|+++|.+||.|..+++..+. .+|+|||+|.+.++|..|++.|+|..+.| +.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~---~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG---RPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC---EEEeeC
Confidence 58999999999999999999999999999998644 36999999999999999999999999998 888873
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=8.3e-13 Score=114.67 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=63.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~ 127 (320)
.++|||+||++.+||++|+++|+.|+.++...|... ..+|||||+|.+.++|+.||. |||..|. |+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~---gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV---DQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC---CceEEEEeccC
Confidence 689999999999999999999999944433333322 246999999999999999996 9999998 79999999853
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=95.81 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
.+.++-|||+|||+.+|.|++.++|-+| |.| |++ +..+|-|||.|++..+|++|++.|+|..+. ++-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~---~ryl 87 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD---NRYL 87 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC---CceE
Confidence 3568999999999999999999999999 888 444 345799999999999999999999999998 6999
Q ss_pred EEEEcccccc
Q 020917 121 HTEMAKKNLF 130 (320)
Q Consensus 121 ~v~~a~~~~~ 130 (320)
.|.|-.....
T Consensus 88 ~vlyyq~~~~ 97 (124)
T KOG0114|consen 88 VVLYYQPEDA 97 (124)
T ss_pred EEEecCHHHH
Confidence 9999876543
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.42 E-value=2e-13 Score=117.82 Aligned_cols=72 Identities=31% Similarity=0.494 Sum_probs=69.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
..|||+|||.++++.+|+.+|++||+|++++|++ .||||+.++...|..|++.|||+.|.| ..|.|+-+|++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg---~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHG---VNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecc---eEEEEEecccc
Confidence 4699999999999999999999999999999996 799999999999999999999999999 99999999998
No 70
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.41 E-value=3.7e-12 Score=113.13 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=65.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.++|||+|||..+|+++|+++|..|+.+....+... ..+|||||+|.+.++|..|++.++|..|. |+.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~---~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE---GRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC---CceeEeec
Confidence 699999999999999999999999955433333332 24699999999999999999999999998 89999999
Q ss_pred ccc
Q 020917 125 AKK 127 (320)
Q Consensus 125 a~~ 127 (320)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 764
No 71
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.3e-12 Score=110.32 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=67.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-----e--C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K--G-EKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-----~--~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
.++...+|=|.||+.+++|++|++||.+| |.|.++ + + .||||||.|.+.++|.+|++.|||+-++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd--- 257 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD--- 257 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc---
Confidence 45678899999999999999999999999 555443 2 2 3699999999999999999999999998
Q ss_pred CCeEEEEEcccc
Q 020917 117 KSVLHTEMAKKN 128 (320)
Q Consensus 117 gr~l~v~~a~~~ 128 (320)
.-.|+|+|++++
T Consensus 258 ~LILrvEwskP~ 269 (270)
T KOG0122|consen 258 NLILRVEWSKPS 269 (270)
T ss_pred eEEEEEEecCCC
Confidence 488999999875
No 72
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=3.1e-13 Score=111.36 Aligned_cols=75 Identities=21% Similarity=0.385 Sum_probs=69.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
-.+|.|-||-+-++.++|+.+|.+||.|-+|.|.++.- +|||||.|.+..+|+.|+++|.|..|+| +.|+|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg---RelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG---RELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc---ceeeehh
Confidence 46799999999999999999999999999999976543 8999999999999999999999999999 9999998
Q ss_pred ec
Q 020917 299 SK 300 (320)
Q Consensus 299 ak 300 (320)
++
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 75
No 73
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=5.3e-13 Score=108.13 Aligned_cols=77 Identities=21% Similarity=0.423 Sum_probs=70.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
.++|||+|||.++-|.||.++|.+||.|..|.|..... -+||||+|++..+|+.||..-+|+.+.| ..|+|+|++.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg---~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG---CRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc---ceEEEEeccC
Confidence 68899999999999999999999999999999964333 5799999999999999999999999999 8999999765
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.6e-13 Score=101.35 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=63.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..++|||||||++.+|||+|.+||++.+.+...|+-+. +-.|||||+|.+.++|+.||.-++|..++ .++|+|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd---dr~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD---DRPIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc---ccceee
Confidence 34789999999999999999999999933333332222 22399999999999999999999999998 599999
Q ss_pred EEc
Q 020917 123 EMA 125 (320)
Q Consensus 123 ~~a 125 (320)
.|.
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 986
No 75
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=4.9e-12 Score=89.25 Aligned_cols=71 Identities=32% Similarity=0.608 Sum_probs=65.9
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. +++|||+|.+.++|..|++.++|..+.| +.|+|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~---~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG---RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC---eEEEEeC
Confidence 489999999999999999999999999999987543 7999999999999999999999999999 8999875
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.1e-13 Score=110.55 Aligned_cols=77 Identities=21% Similarity=0.407 Sum_probs=72.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEec----CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQ----ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~----~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+||||++|.+++||.-|...|-.||.|+.|.+.-+ +.|||+||+|...|+|..||+.||+.+|.| |.|+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G---rtirVN~ 86 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG---RTIRVNL 86 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc---eeEEEee
Confidence 689999999999999999999999999999998532 338999999999999999999999999999 9999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
+++.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9987
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=3.8e-12 Score=88.95 Aligned_cols=67 Identities=28% Similarity=0.528 Sum_probs=61.5
Q ss_pred EeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 228 IGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 228 V~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
|+||+..+++++|+++|++||.|..+.+..+.. +|+|||+|.+.++|..|++.|+|..+.| +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~---~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG---RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC---cEEEeC
Confidence 679999999999999999999999999987543 7899999999999999999999999998 888874
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=1.3e-13 Score=111.38 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+.-|||||||+++||.||.-+|++||+|+.|.++++.+ +||||+.|+|..+..-|++.|||..|.| |.|+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g---RtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG---RTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc---eeEEeee
Confidence 45699999999999999999999999999999998765 8999999999999999999999999999 9999987
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
--+.
T Consensus 112 v~~Y 115 (219)
T KOG0126|consen 112 VSNY 115 (219)
T ss_pred cccc
Confidence 5443
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=3e-12 Score=117.70 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCH--HHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTA--QLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~--e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
...-+||||||++.+|++||+.+|..|+.+....|...+.||||||+|.+. +++.+||+.|||..|. |+.|+|+-
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK---GR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec---CceeEEee
Confidence 446799999999999999999999999444333232223489999999987 7899999999999998 89999999
Q ss_pred ccccc
Q 020917 125 AKKNL 129 (320)
Q Consensus 125 a~~~~ 129 (320)
|++..
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 98764
No 80
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=117.34 Aligned_cols=78 Identities=21% Similarity=0.252 Sum_probs=72.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~ 127 (320)
..+.|||+||+.++|||.|+++|+.| |+|.+++..|-||||+|.+.++|.+||+.+||..|+ |..|.|.+||+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeld---G~~iEvtLAKP 330 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELD---GSPIEVTLAKP 330 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccceeEEeecchHHHHHHHHHhcCceec---CceEEEEecCC
Confidence 46899999999999999999999999 999999877899999999999999999999999999 89999999998
Q ss_pred ccccc
Q 020917 128 NLFVK 132 (320)
Q Consensus 128 ~~~~~ 132 (320)
....+
T Consensus 331 ~~k~k 335 (506)
T KOG0117|consen 331 VDKKK 335 (506)
T ss_pred hhhhc
Confidence 76543
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.8e-12 Score=98.81 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=70.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
...|||.+++.+++|++|.+.|+.||.|+.|.+--+.. +|||.|+|++.++|+.|+.+|||..|-| ..|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~---q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG---QNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC---CceeEEE
Confidence 67899999999999999999999999999998844333 8999999999999999999999999999 8999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7544
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.2e-11 Score=107.45 Aligned_cols=81 Identities=21% Similarity=0.369 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCcee
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGM 294 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l 294 (320)
...|-+||||+-|+.+++|..|+..|.+||.|+.|+|+++. .+|||||+|+++.+...|.+.-+|..|+| +.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg---rri 173 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG---RRI 173 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC---cEE
Confidence 34578999999999999999999999999999999998763 38999999999999999999999999999 899
Q ss_pred EEEeecCC
Q 020917 295 RIQYSKNP 302 (320)
Q Consensus 295 ~v~~ak~~ 302 (320)
-|.+-+..
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 99886544
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=3.1e-10 Score=103.21 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
...++|||+|||++.||+.|++-|..||.|+.+.|+- ..+-.+.|.|.++++|++|+..|||..|.| +.|+|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s~edAEra~a~Mngs~l~G---r~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFSPEDAERACALMNGSRLDG---RNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecCHHHHHHHHHHhccCcccC---ceeeeeeC
Confidence 4568899999999999999999999999999999964 333456999999999999999999999999 99999873
No 84
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=9.4e-12 Score=88.00 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=51.8
Q ss_pred EEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eC----CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 52 IFITGLPDDVKERELQNLLRWLPGYEASQVNY---KG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 52 L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~----~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
|||+|||.++++++|+++|+.+ +.|..+ .. .+|+|||+|.+.++|.+|++.++|..|. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~---g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID---GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC---CEEcC
Confidence 7999999999999999999999 544332 22 2599999999999999999999999998 78764
No 85
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=6.5e-12 Score=117.67 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=73.4
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
+.+||||+|++++|++|.++|+..|.|.+++++.|+. +||||++|.+.++|.+|++.|||.++.| ++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g---r~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG---RKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC---ceEEeecc
Confidence 8899999999999999999999999999999987665 8999999999999999999999999999 99999998
Q ss_pred cCCCC
Q 020917 300 KNPFG 304 (320)
Q Consensus 300 k~~~~ 304 (320)
.+...
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 77633
No 86
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=109.14 Aligned_cols=76 Identities=33% Similarity=0.540 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.++|||+||+.++++++|+++|.+||.|..+++..+. .+|||||+|.+.++|..|+..|+|..|.| ++|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~---~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG---RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC---ceeEeec
Confidence 6899999999999999999999999999999997764 28999999999999999999999999999 9999999
Q ss_pred ecC
Q 020917 299 SKN 301 (320)
Q Consensus 299 ak~ 301 (320)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 754
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.28 E-value=1.1e-10 Score=107.89 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=107.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
+....|-+++||+.+|++||+++|+......-.+.+..+ .+|-|||+|.+.|++++|++ .+...+. .|=|.|.-+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg---~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMG---HRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhC---CceEEEEcc
Confidence 445678899999999999999999998333322222222 34999999999999999998 7787786 377887655
Q ss_pred ccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (320)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (320)
....-... + +..+
T Consensus 84 ~~~e~d~~--------~--------------~~~g--------------------------------------------- 96 (510)
T KOG4211|consen 84 GGAEADWV--------M--------------RPGG--------------------------------------------- 96 (510)
T ss_pred CCcccccc--------c--------------cCCC---------------------------------------------
Confidence 33211000 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEE---ecCCcceEEEEEcCHHHHHHHHHHh
Q 020917 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVL---RQERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~-v~i~---~~~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
+ .......+|=+++||+.+|++||.++|+----+.. |-+. +.+..|=|||+|++.+.|++||+ -
T Consensus 97 --~---------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-r 164 (510)
T KOG4211|consen 97 --P---------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-R 164 (510)
T ss_pred --C---------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-H
Confidence 0 00012567889999999999999999986533322 2222 22236889999999999999996 4
Q ss_pred CCCeeCC
Q 020917 282 QGAVIPS 288 (320)
Q Consensus 282 nG~~l~g 288 (320)
|-..|..
T Consensus 165 hre~iGh 171 (510)
T KOG4211|consen 165 HRENIGH 171 (510)
T ss_pred HHHhhcc
Confidence 4444543
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=7.5e-12 Score=105.42 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=62.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
-+.||||+|++++..|+|++.|.+||+|++..|+.++. |||+||+|.|.++|.+|++.-| -.|+| |+--|++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG---R~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG---RKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccc---cccccch
Confidence 46799999999999999999999999999999987754 8999999999999999997544 46677 6655555
Q ss_pred e
Q 020917 299 S 299 (320)
Q Consensus 299 a 299 (320)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=103.95 Aligned_cols=75 Identities=12% Similarity=0.021 Sum_probs=61.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
...+|||+||++.+||++|+++|+.|+.++...|.. +..+++|||+|.++++|+.|+. |+|..|. ++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~---d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIV---DQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeC---CceEEEEeCc
Confidence 468999999999999999999999994433333322 2345899999999999999996 9999998 6999998764
No 90
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.26 E-value=1.6e-10 Score=96.62 Aligned_cols=95 Identities=19% Similarity=0.340 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
...+||||.+||.++...||..+|..|-..+...|....+ +.+|||.|.+..+|..|+++|||..|+-.....|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3479999999999999999999999998887776643222 47999999999999999999999999854446899
Q ss_pred EEeecCCCCCCCCCCCCCCC
Q 020917 296 IQYSKNPFGKRKDGTNGVPP 315 (320)
Q Consensus 296 v~~ak~~~~~~~~~~~~~~~ 315 (320)
|+++|+--..+.....|.|.
T Consensus 112 iElAKSNtK~kr~k~sgtP~ 131 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPG 131 (284)
T ss_pred eeehhcCcccccCCCCCCCC
Confidence 99999875545555555554
No 91
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=1.9e-11 Score=117.88 Aligned_cols=80 Identities=16% Similarity=0.366 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
.++|||||.|+.+++|.||.++|..||.|.+|.++ ..++||||.+....+|.+|+++|++..+.+ +.|||.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li--~~R~cAfI~M~~RqdA~kalqkl~n~kv~~---k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI--PPRGCAFIKMVRRQDAEKALQKLSNVKVAD---KTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec--cCCceeEEEEeehhHHHHHHHHHhcccccc---eeeEEeeecc
Confidence 47999999999999999999999999999999997 457999999999999999999999999999 9999999998
Q ss_pred CCCCCC
Q 020917 302 PFGKRK 307 (320)
Q Consensus 302 ~~~~~~ 307 (320)
+ +.|.
T Consensus 495 ~-G~ks 499 (894)
T KOG0132|consen 495 K-GPKS 499 (894)
T ss_pred C-Ccch
Confidence 8 5554
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.23 E-value=2.3e-11 Score=114.05 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=66.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
+.|||||+|++++||+|.++|+.. |.|+.++ ..|||||++|.+.++|..|++.|||.++. ||+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~ 91 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLR 91 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEE
Confidence 899999999999999999999999 6665442 23699999999999999999999999998 89999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|+|+.....
T Consensus 92 v~~~~~~~~ 100 (435)
T KOG0108|consen 92 VNYASNRKN 100 (435)
T ss_pred eecccccch
Confidence 999976654
No 93
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.2e-10 Score=109.91 Aligned_cols=183 Identities=18% Similarity=0.258 Sum_probs=129.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCc----c---c-cEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGY----E---A-SQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~----~---~-~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
..-..+.+||++++..++++++-.+|..-... . | .++.+ .-.+++||++|.+.++|..|+. ++++.+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~- 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMA-LDGIIFE- 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhc-ccchhhC-
Confidence 34568999999999999999999888765221 0 1 13333 2346999999999999999997 8888887
Q ss_pred CCCCeEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 115 ETKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGV 194 (320)
Q Consensus 115 ~~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (320)
|.++++---........ ......+ ++.+
T Consensus 249 --g~~~~~~r~~d~~~~p~-------------------------------------~~~~~~~-----------~~~~-- 276 (500)
T KOG0120|consen 249 --GRPLKIRRPHDYQPVPG-------------------------------------ITLSPSQ-----------LGKV-- 276 (500)
T ss_pred --CCCceecccccccCCcc-------------------------------------chhhhcc-----------cccc--
Confidence 67777632211100000 0000000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcC
Q 020917 195 PPVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFED 270 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~ 270 (320)
+ .........-..+.+||+|||..+++++++++...||.++.++++.+.. +||||-+|.+
T Consensus 277 -------------~---~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~d 340 (500)
T KOG0120|consen 277 -------------G---LLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCD 340 (500)
T ss_pred -------------C---CcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeC
Confidence 0 0000011222357899999999999999999999999999998876543 8999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 271 VNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 271 ~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
......|+..|||..+++ +.|.|+.+-
T Consensus 341 psvtd~A~agLnGm~lgd---~~lvvq~A~ 367 (500)
T KOG0120|consen 341 PSVTDQAIAGLNGMQLGD---KKLVVQRAI 367 (500)
T ss_pred CcchhhhhcccchhhhcC---ceeEeehhh
Confidence 999999999999999999 899999863
No 94
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=1.7e-10 Score=80.81 Aligned_cols=65 Identities=26% Similarity=0.367 Sum_probs=55.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eC----CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~----~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
+|||+|||..+++++|+++|+.| |.+..+ .. .+|+|||+|.+.++|++|++.++|..+. |+.|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEee
Confidence 59999999999999999999999 544322 11 3599999999999999999999999997 788876
No 95
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.6e-11 Score=101.36 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=59.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
-.+||||||++.++.|+|++.|+.|+.++..+|.. + .+||||||+|+|.|+|++|++.-| -.|+ ||+-.|++
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId---GR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID---GRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc---ccccccch
Confidence 46899999999999999999999996555444333 2 357999999999999999987443 3456 89888887
Q ss_pred ccc
Q 020917 125 AKK 127 (320)
Q Consensus 125 a~~ 127 (320)
|.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 754
No 96
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.17 E-value=2.7e-11 Score=98.21 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=69.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..||||+||+..++++-|+++|-+.|.|+.+++.++. .+|||||+|.++++|+=|++.||.-.|.| |+|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg---rpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG---RPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC---ceeEEEe
Confidence 5799999999999999999999999999999996432 48999999999999999999999999999 9999988
Q ss_pred ec
Q 020917 299 SK 300 (320)
Q Consensus 299 ak 300 (320)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 76
No 97
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.1e-10 Score=103.51 Aligned_cols=74 Identities=22% Similarity=0.487 Sum_probs=66.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHH-hCCCeeCCCCCceeEEEeecC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHN-LQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~-lnG~~l~g~~~~~l~v~~ak~ 301 (320)
-.+|||++|.+.++|.+|++.|.+||+|.+++++. .+++|||+|.+.++|+.|... +|-..|.| .+|+|.|++.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G---~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVING---FRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecc---eEEEEEeCCC
Confidence 57899999999999999999999999999999984 468999999999999998764 56667788 8999999999
No 98
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.5e-11 Score=101.08 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=68.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
...|+||||+|-.++||.-|...|=+| |.|..++ ..||||||+|.-.|+|..||+.||+..+. ||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---Gr 80 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---GR 80 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---ce
Confidence 457999999999999999999999999 6664442 23699999999999999999999999998 89
Q ss_pred eEEEEEcccccc
Q 020917 119 VLHTEMAKKNLF 130 (320)
Q Consensus 119 ~l~v~~a~~~~~ 130 (320)
.|+|+||++.+.
T Consensus 81 tirVN~AkP~ki 92 (298)
T KOG0111|consen 81 TIRVNLAKPEKI 92 (298)
T ss_pred eEEEeecCCccc
Confidence 999999988754
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.5e-10 Score=81.97 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=49.3
Q ss_pred HHHHHHhhc----cCCCeeEEE-EEec------CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 237 EEELRGLFS----AQPGFKQMK-VLRQ------ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 237 ee~L~~~F~----~~G~i~~v~-i~~~------~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
+++|+++|+ +||.|.++. ++.+ ..+|+|||+|.+.++|..|++.|||+.|.| +.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g---r~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG---RTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC---EEEEeC
Confidence 577888888 999999985 4322 238999999999999999999999999999 888863
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=3.5e-10 Score=79.58 Aligned_cols=71 Identities=27% Similarity=0.369 Sum_probs=57.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC---CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG---EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~---~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
+|+|+|||..+++++|+++|+.++.+....+.... .+|+|||+|.+.++|..|++.+++..+. |+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEeC
Confidence 58999999999999999999999333222222221 2699999999999999999999999987 78888864
No 101
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=9.3e-11 Score=96.85 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=65.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--------eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS 118 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--------~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr 118 (320)
+.-.+|-|-||-+.++.++|+.+|++| |.|..+ +..+|||||.|.+..+|+.||++|+|..++ |+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld---gR 83 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GR 83 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---cc
Confidence 446789999999999999999999999 555333 234699999999999999999999999999 89
Q ss_pred eEEEEEccccc
Q 020917 119 VLHTEMAKKNL 129 (320)
Q Consensus 119 ~l~v~~a~~~~ 129 (320)
.|+|.+|+-..
T Consensus 84 elrVq~arygr 94 (256)
T KOG4207|consen 84 ELRVQMARYGR 94 (256)
T ss_pred eeeehhhhcCC
Confidence 99999886543
No 102
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.3e-10 Score=89.64 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
-+.-.|||.++...+||++|.+.|..|+.+.-..+.+. + .||||+|+|.+.++|.+|++.|||..+. |..|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~v~V 146 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQNVSV 146 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCceeE
Confidence 34668999999999999999999999955444445542 2 3799999999999999999999999998 799999
Q ss_pred EEcccc
Q 020917 123 EMAKKN 128 (320)
Q Consensus 123 ~~a~~~ 128 (320)
.|+..+
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 999654
No 103
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=5e-10 Score=97.40 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=66.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
..++.+||||+-|+++++|.+|+..|+.|+.+.-..|.- + .++|||||+|.+..+...|.+..+|+.|+ |+.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id---grri 173 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID---GRRI 173 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec---CcEE
Confidence 458899999999999999999999999993332222221 1 24699999999999999999999999998 8999
Q ss_pred EEEEcccc
Q 020917 121 HTEMAKKN 128 (320)
Q Consensus 121 ~v~~a~~~ 128 (320)
.|.+-.-.
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 99886433
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.09 E-value=4.3e-10 Score=78.32 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=53.4
Q ss_pred EcCCCCCCCHHHHHHHhhhCCCccccEEEeeC----CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 54 ITGLPDDVKERELQNLLRWLPGYEASQVNYKG----EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 54 V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~----~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
|+|||..+++++|+++|+.|+.+....+.... .+|+|||+|.+.++|.+|++.|++..+. |+.|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~---~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD---GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC---CcEEEe
Confidence 68999999999999999999433222222221 2599999999999999999999999997 788876
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.6e-10 Score=113.33 Aligned_cols=166 Identities=16% Similarity=0.254 Sum_probs=132.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
..++|||+|||+..+++.+|+..|..++.++..-++. +...-||||.|.+...+-.|+..+.+..|.. | .+++.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~--g-~~r~g 446 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN--G-THRIG 446 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc--C-ccccc
Confidence 4489999999999999999999999993333322322 2234899999999999999998898888863 2 33333
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
+...
T Consensus 447 lG~~---------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 447 LGQP---------------------------------------------------------------------------- 450 (975)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCC
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG 283 (320)
...+++.+++++|..-+....|..+|..||.|..|.+. .+..|++|.|++...|+.|+..|-|
T Consensus 451 ---------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~--hgq~yayi~yes~~~aq~a~~~~rg 513 (975)
T KOG0112|consen 451 ---------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR--HGQPYAYIQYESPPAAQAATHDMRG 513 (975)
T ss_pred ---------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc--cCCcceeeecccCccchhhHHHHhc
Confidence 01136889999999999999999999999999999885 4568999999999999999999999
Q ss_pred CeeCCCCCceeEEEeecCCCCCCCCC
Q 020917 284 AVIPSSGSVGMRIQYSKNPFGKRKDG 309 (320)
Q Consensus 284 ~~l~g~~~~~l~v~~ak~~~~~~~~~ 309 (320)
..|++- .+.|+|.|++.+++.-++.
T Consensus 514 ap~G~P-~~r~rvdla~~~~~~Pqq~ 538 (975)
T KOG0112|consen 514 APLGGP-PRRLRVDLASPPGATPQQN 538 (975)
T ss_pred CcCCCC-CcccccccccCCCCChhhh
Confidence 999974 4679999999997754443
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=1e-09 Score=74.06 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=45.7
Q ss_pred HHHHhhhCCCccccEEEee--CC-cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 66 LQNLLRWLPGYEASQVNYK--GE-KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 66 L~~lF~~~~~~~~~iv~~~--~~-kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
|+++|++| |.|.++. .. +++|||+|.+.++|.+|++.|||..+. |++|+|.||
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~---g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFN---GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEET---TEEEEEEEE
T ss_pred ChHHhCCc----ccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 68899999 7775552 33 499999999999999999999999998 899999986
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=4.5e-09 Score=97.89 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=104.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e-------CCcc---eEEEEeCCHHHHHHHHHHhcCceeCcC
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-------GEKP---MGFALFSTAQLAVAAKDALQEMIFDAE 115 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~-------~~kg---~aFV~F~~~e~A~~A~~~lng~~~~~~ 115 (320)
.++||||+||.+++|++|...|..| |.+... + ..+| |+|+.|+++.+...-+++..- .
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~F----Gs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~-- 329 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQF----GSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G-- 329 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccc----cceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c--
Confidence 6899999999999999999999999 555322 1 1136 999999999998887665432 2
Q ss_pred CCCeEEEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 116 TKSVLHTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVP 195 (320)
Q Consensus 116 ~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (320)
...+-+..+......+. ...+ +|...
T Consensus 330 -~~~~yf~vss~~~k~k~----------VQIr------------------------PW~la------------------- 355 (520)
T KOG0129|consen 330 -EGNYYFKVSSPTIKDKE----------VQIR------------------------PWVLA------------------- 355 (520)
T ss_pred -ccceEEEEecCcccccc----------eeEE------------------------eeEec-------------------
Confidence 22333333322211100 0000 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhc-cCCCeeEEEEEecCC----cceEEEEEcC
Q 020917 196 PVQMPAPAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFS-AQPGFKQMKVLRQER----HTVCFIEFED 270 (320)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~-~~G~i~~v~i~~~~~----~g~aFV~F~~ 270 (320)
.+.+.. .......+.+|||||+||.-++-+||..+|. -||.|+.+-|..|.+ +|-|=|.|.+
T Consensus 356 ------------Ds~fv~-d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsn 422 (520)
T KOG0129|consen 356 ------------DSDFVL-DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSN 422 (520)
T ss_pred ------------cchhhh-ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecc
Confidence 000000 0011122579999999999999999999998 799999999987754 8999999999
Q ss_pred HHHHHHHHHH
Q 020917 271 VNSASSVHHN 280 (320)
Q Consensus 271 ~~~A~~Al~~ 280 (320)
..+-.+||.+
T Consensus 423 qqsYi~AIsa 432 (520)
T KOG0129|consen 423 QQAYIKAISA 432 (520)
T ss_pred cHHHHHHHhh
Confidence 9999999863
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=9.5e-10 Score=94.26 Aligned_cols=79 Identities=23% Similarity=0.460 Sum_probs=68.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCee-CCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVI-PSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l-~g~~~~~l~v~ 297 (320)
..+.||||-|.+.-.|||++.+|+.||.|.++-+.+..+ |||+||+|.+..+|+.||.+|||..- .|. .-.|-|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA-SSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA-SSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCC-ccceEEE
Confidence 468899999999999999999999999999999987554 99999999999999999999999754 442 2579999
Q ss_pred eecC
Q 020917 298 YSKN 301 (320)
Q Consensus 298 ~ak~ 301 (320)
|+..
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 9754
No 109
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.1e-09 Score=97.16 Aligned_cols=84 Identities=24% Similarity=0.440 Sum_probs=76.0
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcc----eEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 216 NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHT----VCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 216 ~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g----~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
.+...||-++|||--|.+.++++||.-+|+.||.|.++.++++...| ||||+|++.++.++|.=.|.+-.|..
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD--- 308 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD--- 308 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc---
Confidence 34456788999999999999999999999999999999999887644 99999999999999999999999999
Q ss_pred ceeEEEeecCC
Q 020917 292 VGMRIQYSKNP 302 (320)
Q Consensus 292 ~~l~v~~ak~~ 302 (320)
++|+|.|+-+-
T Consensus 309 rRIHVDFSQSV 319 (479)
T KOG0415|consen 309 RRIHVDFSQSV 319 (479)
T ss_pred ceEEeehhhhh
Confidence 89999996443
No 110
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=4.9e-11 Score=96.61 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=63.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-----e-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCe
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSV 119 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-----~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~ 119 (320)
.+.=|||||||+++||.||.-+|+.| |.||.+ + + ++||||+.|+|..+.-.|++.|||+.|. ||.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRt 106 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRT 106 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---cee
Confidence 36679999999999999999999999 555443 2 2 4699999999999999999999999998 899
Q ss_pred EEEEEccc
Q 020917 120 LHTEMAKK 127 (320)
Q Consensus 120 l~v~~a~~ 127 (320)
|+|.....
T Consensus 107 irVDHv~~ 114 (219)
T KOG0126|consen 107 IRVDHVSN 114 (219)
T ss_pred EEeeeccc
Confidence 99987643
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=2.5e-10 Score=95.16 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=109.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK------GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
+..+||||+||-..++||-|.+||-.- |.|++++ ....||||.|.++-+..-|++.+||.+++ ++.|
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~---~~e~ 79 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE---EDEE 79 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc---cchh
Confidence 568999999999999999999999999 8887763 12269999999999999999999999998 5776
Q ss_pred EEEEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 121 HTEMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMP 200 (320)
Q Consensus 121 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (320)
+|.+-.-.+.
T Consensus 80 q~~~r~G~sh---------------------------------------------------------------------- 89 (267)
T KOG4454|consen 80 QRTLRCGNSH---------------------------------------------------------------------- 89 (267)
T ss_pred hcccccCCCc----------------------------------------------------------------------
Confidence 6643311100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHH
Q 020917 201 APAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSV 277 (320)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~A 277 (320)
. -|...++++.+.++|+..|.+..+++.+..+ +.++|+.+...-+.-.+
T Consensus 90 -----------------------a-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 90 -----------------------A-----PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred -----------------------c-----hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 0 1344578888899999999999998865443 78999999988888889
Q ss_pred HHHhCCCeeCC
Q 020917 278 HHNLQGAVIPS 288 (320)
Q Consensus 278 l~~lnG~~l~g 288 (320)
++...+.++.-
T Consensus 142 ~~~y~~l~~~~ 152 (267)
T KOG4454|consen 142 LDLYQGLELFQ 152 (267)
T ss_pred hhhhcccCcCC
Confidence 98888888765
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=2.1e-09 Score=100.82 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=112.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.-..++|+|-|||..|++++|+.+|+.|+.+.+ +++. ..+|..||+|.|..+|++|+++|++..|. |+.|+...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~---~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--IRETPNKRGIVFVEFYDVRDAERALKALNRREIA---GKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhh--hhcccccCceEEEEEeehHhHHHHHHHHHHHHhh---hhhhcCCC
Confidence 345799999999999999999999999954444 4443 34699999999999999999999999998 67777111
Q ss_pred cccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 125 AKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAP 204 (320)
Q Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (320)
. ..+.+.-..+ ..++.+...+
T Consensus 147 ~-----~~~~~~~~~~------------------------------~~~~~~~~~p------------------------ 167 (549)
T KOG4660|consen 147 G-----ARRAMGLQSG------------------------------TSFLNHFGSP------------------------ 167 (549)
T ss_pred c-----ccccchhccc------------------------------chhhhhccch------------------------
Confidence 0 0110000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC
Q 020917 205 VPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (320)
.......+-+...+| +.|.+..+..-++-.|+.+|.+.. +... ..+..-|+.|.+..++..+...+ |.
T Consensus 168 --------~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~-~~~hq~~~~~~~~~s~a~~~~~~-G~ 235 (549)
T KOG4660|consen 168 --------LANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RETP-LLNHQRFVEFADNRSYAFSEPRG-GF 235 (549)
T ss_pred --------hhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cccc-chhhhhhhhhccccchhhcccCC-ce
Confidence 000000000112232 338888777666777888888877 5542 22346799999999987777655 77
Q ss_pred eeCCCCCceeEEEeecC
Q 020917 285 VIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 285 ~l~g~~~~~l~v~~ak~ 301 (320)
.+.+ +..-++|+.+
T Consensus 236 ~~s~---~~~v~t~S~~ 249 (549)
T KOG4660|consen 236 LISN---SSGVITFSGP 249 (549)
T ss_pred ecCC---CCceEEecCC
Confidence 7777 6788888766
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.95 E-value=1.7e-09 Score=104.72 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=65.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
++|||||+|+..++|.||+.+|+.| |.|..+ ...+|||||.+....+|.+|+..|+...+. ++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~---~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVA---DKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc----ccceeEeeccCCceeEEEEeehhHHHHHHHHHhccccc---ceeeEEeeec
Confidence 6899999999999999999999999 666333 467899999999999999999999999997 6999999986
Q ss_pred cc
Q 020917 127 KN 128 (320)
Q Consensus 127 ~~ 128 (320)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 54
No 114
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.90 E-value=5.1e-09 Score=100.47 Aligned_cols=80 Identities=23% Similarity=0.425 Sum_probs=73.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~ 292 (320)
.|-++.|||+||++.++++.|...|+.||.|.+|+|+...+ +.|+||-|-+..+|++|++.|+|..+.+ .
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~---~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME---Y 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee---e
Confidence 45578899999999999999999999999999999986543 7899999999999999999999999999 8
Q ss_pred eeEEEeecCC
Q 020917 293 GMRIQYSKNP 302 (320)
Q Consensus 293 ~l~v~~ak~~ 302 (320)
.|++.|+|.-
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999999654
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=2.4e-10 Score=103.55 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=121.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhC-CCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccccc
Q 020917 51 TIFITGLPDDVKERELQNLLRWL-PGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNL 129 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~-~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~ 129 (320)
.|||+||.+.++..||+.+|... ....+..+. + .||+||.+.+...|.+|++.++|..-.- |+.+.++++-.+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-k--~gyafvd~pdq~wa~kaie~~sgk~elq--Gkr~e~~~sv~kk 77 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-K--SGYAFVDCPDQQWANKAIETLSGKVELQ--GKRQEVEHSVPKK 77 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-e--cceeeccCCchhhhhhhHHhhchhhhhc--CceeeccchhhHH
Confidence 58999999999999999999877 223333333 2 3999999999999999999999977533 8999988875543
Q ss_pred ccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 130 FVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPVPAPS 209 (320)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (320)
..
T Consensus 78 qr------------------------------------------------------------------------------ 79 (584)
T KOG2193|consen 78 QR------------------------------------------------------------------------------ 79 (584)
T ss_pred HH------------------------------------------------------------------------------
Confidence 22
Q ss_pred CCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEe-cCCcceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 210 SYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR-QERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~-~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
++.+-|+|+++...++.|..|...||.+..+..+. +...-..-|+|...+.+..||..|||..+..
T Consensus 80 -------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en 146 (584)
T KOG2193|consen 80 -------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN 146 (584)
T ss_pred -------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh
Confidence 23477999999999999999999999998886653 2224466788999999999999999999998
Q ss_pred CCCceeEEEe
Q 020917 289 SGSVGMRIQY 298 (320)
Q Consensus 289 ~~~~~l~v~~ 298 (320)
..++|.|
T Consensus 147 ---~~~k~~Y 153 (584)
T KOG2193|consen 147 ---QHLKVGY 153 (584)
T ss_pred ---hhhhccc
Confidence 8999999
No 116
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=1.8e-09 Score=101.33 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=66.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
...+..+|+|-|||..+++++|+++|+.||+|+.|+.-. ..+|.+||+|.|+.+|++|+++||+++|.| +.|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~---~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAG---KRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhh---hhhc
Confidence 344578999999999999999999999999999987754 457999999999999999999999999999 8888
No 117
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.85 E-value=1.4e-08 Score=95.26 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=69.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
.-.++|||++|...+.-.||+.||++|+.+.|..|... +.+.|+||++.+.++|.++|+.|+...+. |+.|.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---GrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---GRMISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc---ceeeee
Confidence 44789999999999999999999999966666554442 34699999999999999999999999999 899999
Q ss_pred EEccccc
Q 020917 123 EMAKKNL 129 (320)
Q Consensus 123 ~~a~~~~ 129 (320)
+-+++.-
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9987653
No 118
>smart00361 RRM_1 RNA recognition motif.
Probab=98.83 E-value=1.3e-08 Score=71.87 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHHHHHhh----hCCCccccE-EEe-e-----CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 63 ERELQNLLR----WLPGYEASQ-VNY-K-----GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 63 ee~L~~lF~----~~~~~~~~i-v~~-~-----~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
+++|+++|+ .|+.+.... +.+ + .++|||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEe
Confidence 678999998 774333221 222 2 24699999999999999999999999998 798876
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.82 E-value=9.7e-09 Score=96.36 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
..+.|||.+|...+--.||+.+|++||.|+..+++++.. +.|+||+|.+.++|.+||..||-.+|.| +-|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG---rmISVE 480 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG---RMISVE 480 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc---eeeeee
Confidence 467899999999988999999999999999999997644 8899999999999999999999999999 999999
Q ss_pred eecCCCC
Q 020917 298 YSKNPFG 304 (320)
Q Consensus 298 ~ak~~~~ 304 (320)
-+|+--+
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 9988644
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=83.85 Aligned_cols=74 Identities=14% Similarity=0.254 Sum_probs=66.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccC-CCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQ-PGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~-G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
...+||..++.-+.+.+++..|.+| |.|..+++-|+.. +|||||+|++.+.|..|-..|||+-|.| +.|.|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e---~lL~c~ 125 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME---HLLECH 125 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh---heeeeE
Confidence 4679999999999999999999998 6678888855443 8999999999999999999999999999 999999
Q ss_pred ee
Q 020917 298 YS 299 (320)
Q Consensus 298 ~a 299 (320)
|=
T Consensus 126 vm 127 (214)
T KOG4208|consen 126 VM 127 (214)
T ss_pred Ee
Confidence 84
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=2.4e-09 Score=104.75 Aligned_cols=141 Identities=17% Similarity=0.132 Sum_probs=114.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe----eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY----KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~----~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
.++||+||+..+.+++|...|..++..+...+.. +.-||+|||.|.+.++|.+|+....+..+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------ 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------ 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------
Confidence 4679999999999999999999994433322222 223699999999999999999844443332
Q ss_pred ccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (320)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (320)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhC
Q 020917 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~ln 282 (320)
...|||+|+|+..|.++|+.+|.++|.+.+++++..+. +|.+||.|.+..+|.+++..+.
T Consensus 736 -----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 -----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred -----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccch
Confidence 23489999999999999999999999999998875444 8999999999999999999999
Q ss_pred CCeeCCCCCceeEEEeecCC
Q 020917 283 GAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 283 G~~l~g~~~~~l~v~~ak~~ 302 (320)
+..+.. +.+.|+.+...
T Consensus 799 ~~~~rE---~~~~v~vsnp~ 815 (881)
T KOG0128|consen 799 VAGKRE---NNGEVQVSNPE 815 (881)
T ss_pred hhhhhh---cCccccccCCc
Confidence 888887 67777775543
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2.5e-08 Score=88.67 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=60.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcC-ceeCcCCCCeEEEEEc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQE-MIFDAETKSVLHTEMA 125 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~~~~kg~aFV~F~~~e~A~~A~~~lng-~~~~~~~gr~l~v~~a 125 (320)
-++|||++|...++|.+|++.|..| |.| +++-..+++|||+|.+.+.|+.|.+.+-. ..|. |+.|+|.|+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~---G~Rl~i~Wg 300 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVIN---GFRLKIKWG 300 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeec---ceEEEEEeC
Confidence 5899999999999999999999999 555 33334468999999999999998876544 4445 899999999
Q ss_pred cc
Q 020917 126 KK 127 (320)
Q Consensus 126 ~~ 127 (320)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=3.3e-08 Score=84.43 Aligned_cols=76 Identities=25% Similarity=0.469 Sum_probs=67.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..+||.|.|..+++++-|...|.+|..+...+++++.. +||+||.|.+..++..||+.|||.-++. ++|++.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs---rpiklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS---RPIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc---chhHhhh
Confidence 46799999999999999999999999998888877544 8999999999999999999999999998 8888765
Q ss_pred ecC
Q 020917 299 SKN 301 (320)
Q Consensus 299 ak~ 301 (320)
+..
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 433
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.70 E-value=3.2e-08 Score=88.95 Aligned_cols=182 Identities=11% Similarity=0.098 Sum_probs=108.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhC----CCccccEEEee-CCc--ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 51 TIFITGLPDDVKERELQNLLRWL----PGYEASQVNYK-GEK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~----~~~~~~iv~~~-~~k--g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
-|=+++||++.|+.|+.++|..- ++.++.+...+ ..| |-|||.|..+++|..|+. -+...|. .|-|.+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iG---qRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIG---QRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHh---HHHHHHH
Confidence 46789999999999999999533 23344333223 234 999999999999999997 4444553 1333332
Q ss_pred EcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 124 MAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPA 203 (320)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (320)
.+......+ .-++... .... . .. .+ + +.
T Consensus 239 RSTaaEvqq-----------vlnr~~s-~pLi-~-~~------~s--------p-----------~~------------- 266 (508)
T KOG1365|consen 239 RSTAAEVQQ-----------VLNREVS-EPLI-P-GL------TS--------P-----------LL------------- 266 (508)
T ss_pred HHhHHHHHH-----------HHHhhcc-cccc-C-CC------CC--------C-----------CC-------------
Confidence 221111000 0000000 0000 0 00 00 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCC-eeE--EEEEecCC---cceEEEEEcCHHHHHHH
Q 020917 204 PVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPG-FKQ--MKVLRQER---HTVCFIEFEDVNSASSV 277 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~-i~~--v~i~~~~~---~g~aFV~F~~~~~A~~A 277 (320)
+. .+........+..+|=+++||++.+.|||.++|..|.. |.. |.++-+.. .|-|||+|.+.++|..|
T Consensus 267 ----p~--~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aa 340 (508)
T KOG1365|consen 267 ----PG--GPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAA 340 (508)
T ss_pred ----CC--CccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHH
Confidence 00 00000111123678999999999999999999998873 332 55554332 68999999999999999
Q ss_pred HHHhCCCeeCCCCCceeEEE
Q 020917 278 HHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 278 l~~lnG~~l~g~~~~~l~v~ 297 (320)
++.-|....+. |-|.|-
T Consensus 341 aqk~hk~~mk~---RYiEvf 357 (508)
T KOG1365|consen 341 AQKCHKKLMKS---RYIEVF 357 (508)
T ss_pred HHHHHHhhccc---ceEEEe
Confidence 99998887765 555553
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.68 E-value=3.8e-08 Score=88.33 Aligned_cols=169 Identities=15% Similarity=0.213 Sum_probs=119.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCc-eeCcCCCCeEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEM-IFDAETKSVLHT 122 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~-~~~~~~gr~l~v 122 (320)
...++|++++.+.+.+.+...++...+......... . ..+|++.|.|...+.+..|+. +.+. ..+ ++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~---~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLD---GNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccc---cccccC
Confidence 467899999999999998888888884333332222 1 346999999999999999998 5454 333 333333
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
...+....... .+ .
T Consensus 163 dl~~~~~~~~~-----------n~----------~--------------------------------------------- 176 (285)
T KOG4210|consen 163 DLNTRRGLRPK-----------NK----------L--------------------------------------------- 176 (285)
T ss_pred ccccccccccc-----------ch----------h---------------------------------------------
Confidence 22221110000 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al 278 (320)
..-....+.+.++|+||++++++++|+..|..+|.|..+++..... +||++|.|.+...+..++
T Consensus 177 ------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 177 ------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ------------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 0000111233445999999999999999999999999999975444 889999999999999999
Q ss_pred HHhCCCeeCCCCCceeEEEeecCC
Q 020917 279 HNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 279 ~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.. +...+.+ ++++|.+.+..
T Consensus 245 ~~-~~~~~~~---~~~~~~~~~~~ 264 (285)
T KOG4210|consen 245 ND-QTRSIGG---RPLRLEEDEPR 264 (285)
T ss_pred hc-ccCcccC---cccccccCCCC
Confidence 88 8888888 89999998766
No 126
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.64 E-value=8.3e-06 Score=76.03 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=57.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEe-eCC--cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY-KGE--KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~-~~~--kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
....|=+++||+.+|++||.++|+.+..+...| +.+ ... .|-|||+|++.+.|++||. -+...|. .|=|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iG---hRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIG---HRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhc---cceEEee
Confidence 456799999999999999999999994433333 333 222 3999999999999999998 5566675 3777776
Q ss_pred Ecc
Q 020917 124 MAK 126 (320)
Q Consensus 124 ~a~ 126 (320)
.+.
T Consensus 178 ~Ss 180 (510)
T KOG4211|consen 178 RSS 180 (510)
T ss_pred hhH
Confidence 653
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.62 E-value=1.2e-07 Score=82.39 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=68.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEee
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYS 299 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~a 299 (320)
.++|+|.||+..++++||+++|..||.+..+-+..++. .|+|=|.|...++|.+|++.+||..++| +.|+++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG---~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG---RPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC---ceeeeEEe
Confidence 47899999999999999999999999888887765554 6899999999999999999999999999 89999885
Q ss_pred cCC
Q 020917 300 KNP 302 (320)
Q Consensus 300 k~~ 302 (320)
.++
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 444
No 128
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=5e-08 Score=82.89 Aligned_cols=71 Identities=20% Similarity=0.381 Sum_probs=66.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
.+||++|+..+.+.+|..+|..||.|.++.+.. ||+||+|.|.-+|.-|+..|||.+|.+. .+.|+|++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecce---eeeeeccccc
Confidence 589999999999999999999999999998864 8999999999999999999999999993 4999999854
No 129
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.3e-08 Score=85.86 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=70.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe--e-CCc-ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY--K-GEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~--~-~~k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
.+|...|||.-|++-+|.|||.-+|+.|+.+.+|-|.. + +.+ -||||+|.+.+++++|.=.|++..|+ .+.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID---DrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID---DRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec---cceEE
Confidence 35688999999999999999999999997777665443 2 223 89999999999999999999999998 59999
Q ss_pred EEEcccccc
Q 020917 122 TEMAKKNLF 130 (320)
Q Consensus 122 v~~a~~~~~ 130 (320)
|.|+.+-+.
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 999977655
No 130
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.51 E-value=6.5e-07 Score=63.84 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=48.7
Q ss_pred CeEEEeCCCCCCCHHH----HHHhhccCCC-eeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 224 NTLFIGNLGESINEEE----LRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~----L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+.|||.|||.+.+... |++++...|. |.+| . .+.|+|.|.+.+.|.+|.+.|+|..+.| ++|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVFG---NKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhccccccc---ceEEEEE
Confidence 4699999999888754 5577778875 5555 2 3789999999999999999999999999 8999999
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8544
No 131
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.49 E-value=4.3e-07 Score=75.51 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=64.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEE-e---e-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-Y---K-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~-~---~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
......+||..+|..+.+.++...|..|++..-.... . + ++||||||+|.+.+.|+.|-+.||++.|. ++.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---e~lL 122 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---EHLL 122 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh---hhee
Confidence 3456789999999999999999999999533222211 1 1 34699999999999999999999999998 7999
Q ss_pred EEEEcccc
Q 020917 121 HTEMAKKN 128 (320)
Q Consensus 121 ~v~~a~~~ 128 (320)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99887554
No 132
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.48 E-value=4.1e-07 Score=85.22 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=65.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC--C--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE--R--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~--~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
..+|||+|||.++++++|.++|.+||.|+...|.... . ..||||+|.+.+++..|+.+= =..|++ ++|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~---~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG---RKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC---eeEEEEe
Confidence 4559999999999999999999999999988885422 2 379999999999999999754 566666 8999998
Q ss_pred ecCCCC
Q 020917 299 SKNPFG 304 (320)
Q Consensus 299 ak~~~~ 304 (320)
.+..+.
T Consensus 364 k~~~~~ 369 (419)
T KOG0116|consen 364 KRPGFR 369 (419)
T ss_pred cccccc
Confidence 776544
No 133
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=5.6e-08 Score=81.30 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+||||+||-..++||-|.++|-+.|.|..|.|....+ ..||||.|.++.+-.-|++.|||-.+.+ +.|+|.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~---~e~q~~~ 83 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEE---DEEQRTL 83 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhcc---chhhccc
Confidence 68999999999999999999999999999999864433 3499999999999999999999999999 8888887
No 134
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.47 E-value=1.7e-07 Score=84.63 Aligned_cols=200 Identities=14% Similarity=0.114 Sum_probs=113.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEE-------eeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVN-------YKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~-------~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
..|-|.||...+|.++|+.||..++.+...-|- +......|||.|.|..++..|.+.-|-+.++ +.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd----raliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD----RALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee----eeEEE
Confidence 489999999999999999999988433221111 1123489999999999999999844444445 55554
Q ss_pred -EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 -EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPA 201 (320)
Q Consensus 123 -~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (320)
.|....-- +..++......... +...+ +.+.+. ++.+...++..+..-...
T Consensus 84 ~p~~~~~~p-------~r~af~~l~~~nav------------prll~------pdg~Lp-~~~~lt~~nh~p~ailkt-- 135 (479)
T KOG4676|consen 84 RPYGDEVIP-------DRFAFVELADQNAV------------PRLLP------PDGVLP-GDRPLTKINHSPNAILKT-- 135 (479)
T ss_pred EecCCCCCc-------cHHHHHhcCccccc------------ccccC------CCCccC-CCCccccccCCccceecC--
Confidence 44422110 00011000000000 00000 001111 011111111100000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh
Q 020917 202 PAPVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
..+ +..+.+. ....-.+|++|.+|.......++.++|..+|+|...++.......+|-|.|....+...|+. +
T Consensus 136 -P~L--p~~~~A~---kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~ 208 (479)
T KOG4676|consen 136 -PEL--PPQAAAK---KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-S 208 (479)
T ss_pred -CCC--ChHhhhh---hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-h
Confidence 000 0000111 11112578999999999999999999999999999888755556788899999888888885 7
Q ss_pred CCCeeCC
Q 020917 282 QGAVIPS 288 (320)
Q Consensus 282 nG~~l~g 288 (320)
+|+++.-
T Consensus 209 ~gre~k~ 215 (479)
T KOG4676|consen 209 HGRERKR 215 (479)
T ss_pred cchhhhh
Confidence 8888763
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.46 E-value=6.3e-07 Score=79.86 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=69.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCe--------eEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGF--------KQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i--------~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
++.|||+|||.++|.+|+.++|+++|.| -.|+|.++.. +|-|.+.|-..++..-|++.|++..|.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg--- 210 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG--- 210 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC---
Confidence 6679999999999999999999999987 4577776554 8999999999999999999999999999
Q ss_pred ceeEEEeecCC
Q 020917 292 VGMRIQYSKNP 302 (320)
Q Consensus 292 ~~l~v~~ak~~ 302 (320)
+.|+|+-|+--
T Consensus 211 ~~~rVerAkfq 221 (382)
T KOG1548|consen 211 KKLRVERAKFQ 221 (382)
T ss_pred cEEEEehhhhh
Confidence 99999987654
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.46 E-value=6.5e-07 Score=77.79 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=64.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee--C-CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK--G-EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--~-~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
..+|+|.||++.|+++||++||+.|+...-..+-+. + +.|.|=|.|...++|.+||+.+||+.++ |+.|+++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld---G~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD---GRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC---CceeeeEEe
Confidence 378999999999999999999999942222222222 2 2499999999999999999999998888 899999988
Q ss_pred ccccccc
Q 020917 126 KKNLFVK 132 (320)
Q Consensus 126 ~~~~~~~ 132 (320)
.......
T Consensus 160 ~~~~~~~ 166 (243)
T KOG0533|consen 160 SSPSQSK 166 (243)
T ss_pred cCccccc
Confidence 7665543
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.43 E-value=1.8e-06 Score=64.42 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=59.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccE----EEe--eC--CcceEEEEeCCHHHHHHHHHHhcCceeCcC-CCCeE
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ----VNY--KG--EKPMGFALFSTAQLAVAAKDALQEMIFDAE-TKSVL 120 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i----v~~--~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~-~gr~l 120 (320)
.||.|+|||...|.++|.+++...+ .+.. +.+ ++ +.|||||.|.+++.|.+-.+.++|..+..- -.|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 6899999999999999999998762 2222 333 22 359999999999999999999999999421 15777
Q ss_pred EEEEccc
Q 020917 121 HTEMAKK 127 (320)
Q Consensus 121 ~v~~a~~ 127 (320)
.|.||+-
T Consensus 80 ~i~yAri 86 (97)
T PF04059_consen 80 EISYARI 86 (97)
T ss_pred EEehhHh
Confidence 8888854
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1.6e-06 Score=83.83 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=65.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee-----------CCcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK-----------GEKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~-----------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
.+.+++|||+||+..++|+.|...|-.| |.+..++ ..+.||||-|-+..+|++|++.|+|+-+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~- 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM- 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee-
Confidence 3457899999999999999999999999 6663331 23599999999999999999999999998
Q ss_pred CCCCeEEEEEcccc
Q 020917 115 ETKSVLHTEMAKKN 128 (320)
Q Consensus 115 ~~gr~l~v~~a~~~ 128 (320)
+..+++.|++.-
T Consensus 246 --~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 --EYEMKLGWGKAV 257 (877)
T ss_pred --eeeeeecccccc
Confidence 699999999654
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.31 E-value=3.5e-06 Score=79.02 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=60.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC--Cc--ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeE
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVL 120 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~--~k--g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l 120 (320)
......+|||+|||.++++++|+++|..|+.+...-|.++. .+ .||||+|.+.+++..|+++- -..+. ++.|
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig---~~kl 359 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG---GRKL 359 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC---CeeE
Confidence 34456679999999999999999999999444322233322 33 99999999999999999844 44455 7999
Q ss_pred EEEEcccc
Q 020917 121 HTEMAKKN 128 (320)
Q Consensus 121 ~v~~a~~~ 128 (320)
.|+--+..
T Consensus 360 ~Veek~~~ 367 (419)
T KOG0116|consen 360 NVEEKRPG 367 (419)
T ss_pred EEEecccc
Confidence 99865443
No 140
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.31 E-value=1e-06 Score=79.61 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=61.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.+.|||++|.+++++|.|++.|.+||+|..+.++++.. +||+||+|.+.+.-..+|.. --..|.| +.|-+.=
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg---r~ve~k~ 81 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG---RSVEPKR 81 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCC---cccccee
Confidence 57899999999999999999999999999999998654 89999999999988888753 3345555 5555444
Q ss_pred ecCC
Q 020917 299 SKNP 302 (320)
Q Consensus 299 ak~~ 302 (320)
+-++
T Consensus 82 av~r 85 (311)
T KOG4205|consen 82 AVSR 85 (311)
T ss_pred ccCc
Confidence 4333
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.29 E-value=2.4e-05 Score=70.84 Aligned_cols=156 Identities=11% Similarity=0.098 Sum_probs=102.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEe--eCCc-ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNY--KGEK-PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~--~~~k-g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
+.+-.|=.++||+..++.+|-.+|.-.-...+.+ +.. .+.| |.|.|.|.|.|.-+.|++ .+...+. +|.|.|
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g---~ryiev 133 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMG---TRYIEV 133 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhcc---CCceee
Confidence 4566677789999999999999998774444433 443 3444 999999999999999987 5555555 588877
Q ss_pred EEcccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 123 EMAKKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAP 202 (320)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (320)
--+......+- .++ .. ...+..
T Consensus 134 Yka~ge~f~~i----agg-------------------~s--------------~e~~~f--------------------- 155 (508)
T KOG1365|consen 134 YKATGEEFLKI----AGG-------------------TS--------------NEAAPF--------------------- 155 (508)
T ss_pred eccCchhheEe----cCC-------------------cc--------------ccCCCC---------------------
Confidence 65544333221 000 00 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCC----CeeEEEEEecCC---cceEEEEEcCHHHHH
Q 020917 203 APVPAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQP----GFKQMKVLRQER---HTVCFIEFEDVNSAS 275 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G----~i~~v~i~~~~~---~g~aFV~F~~~~~A~ 275 (320)
. +...--.|=.++||+++++.|+.++|.... ....|-+++..+ .|-|||.|..+++|+
T Consensus 156 -----l----------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 156 -----L----------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred -----C----------CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHH
Confidence 0 000012355689999999999999997433 345555554322 689999999999999
Q ss_pred HHHH
Q 020917 276 SVHH 279 (320)
Q Consensus 276 ~Al~ 279 (320)
.|+.
T Consensus 221 ~aL~ 224 (508)
T KOG1365|consen 221 FALR 224 (508)
T ss_pred HHHH
Confidence 9995
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.29 E-value=5.9e-06 Score=61.68 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=61.6
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccC--CCeeEEEEE----ecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC-CceeEE
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVL----RQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG-SVGMRI 296 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~--G~i~~v~i~----~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~-~~~l~v 296 (320)
+||-|+|||...|.++|.+++... |...-+.+. ...+.|||||.|.+++.|.+-.+.+||+...... .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888643 444433332 2233899999999999999999999999986321 377889
Q ss_pred EeecCC
Q 020917 297 QYSKNP 302 (320)
Q Consensus 297 ~~ak~~ 302 (320)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998743
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.27 E-value=4.2e-06 Score=59.74 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=48.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhC-CCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcccc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWL-PGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~-~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~ 128 (320)
..|||.|||.+.....++.-+..+ ..--|.++.+. .+.|.|.|.+.+.|++|..-|+|-++. |+.|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--~~tAilrF~~~~~A~RA~KRmegEdVf---G~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--GGTAILRFPNQEFAERAQKRMEGEDVF---GNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SS---SS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--CCEEEEEeCCHHHHHHHHHhhcccccc---cceEEEEEcCCc
Confidence 369999999999988876655544 22234566664 389999999999999999999999998 899999988543
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.20 E-value=2.9e-06 Score=73.84 Aligned_cols=77 Identities=14% Similarity=0.342 Sum_probs=68.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
....+||+|+.+.++-+++...|+.+|.|..+.+..+.. +||+||+|.+.+..+.|++ |+|..|.| +.++|+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~---~~i~vt 175 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG---PAIEVT 175 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc---ccceee
Confidence 357899999999999999999999999998777754433 7899999999999999998 99999999 899999
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 97655
No 145
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.16 E-value=6.4e-06 Score=62.81 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=39.8
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (320)
+.|+|.+++..++.++|+++|++||.|..|.+.+ +...|||.|.+.+.|..|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999974 3457999999999999999877544
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.08 E-value=4.6e-06 Score=71.53 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=61.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEee-C--CcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYK-G--EKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~~-~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
.-+||+|.|.-+++++.|-..|.+|..+.+.- ++.+ + ++||+||.|.+.+++..||.+|+|.-+. .|+|++-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg---srpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG---SRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc---cchhHhh
Confidence 56899999999999999999999998777644 4443 2 4699999999999999999999999887 4887764
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.03 E-value=5.1e-05 Score=73.48 Aligned_cols=193 Identities=8% Similarity=-0.064 Sum_probs=113.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEeeCC-cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGE-KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~~~~-kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
.+-+-+.+.+++..+.|++++|...-.-...+ ..+... -|.++|.|....++.+|+. -|...+- .|.+.|..+
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~---~R~~q~~P~ 386 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDV---NRPFQTGPP 386 (944)
T ss_pred hheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhh---hcceeecCC
Confidence 45566789999999999999986552211122 222333 3999999999999999987 4444443 378877655
Q ss_pred ccccccccCCccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020917 126 KKNLFVKRGIVADTNAYDQSKRLRTGGDYTHTGYSAPSPFHAPPAPVWGPHGYMAPPPPPYDPYGGYGVPPVQMPAPAPV 205 (320)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (320)
......-. +.. .....+.+ ....++-.. ..+......+.
T Consensus 387 g~~~~~~a-----~~~---------------~~~~~~~~-------~~~~hg~p~------------~~pr~~~~~gq-- 425 (944)
T KOG4307|consen 387 GNLGRNGA-----PPF---------------QAGVPPPV-------IQNNHGRPI------------APPRAMVRPGQ-- 425 (944)
T ss_pred CccccccC-----ccc---------------cccCCCCc-------ccccCCCCC------------CCcccccCCCC--
Confidence 33211000 000 00000000 000000000 00000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeE-EEEEec---CCcceEEEEEcCHHHHHHHHHHh
Q 020917 206 PAPSSYVPVQNTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQ-MKVLRQ---ERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~-v~i~~~---~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
..........+|||..||..+++.++..+|...-.|++ |.|.+. ..++.|||.|..++++..|..--
T Consensus 426 ---------~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~ 496 (944)
T KOG4307|consen 426 ---------NVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVK 496 (944)
T ss_pred ---------CCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcc
Confidence 00011123678999999999999999999998776666 655432 23789999999999999998766
Q ss_pred CCCeeCCCCCceeEEEe
Q 020917 282 QGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 282 nG~~l~g~~~~~l~v~~ 298 (320)
+-+-++. +.|+|.=
T Consensus 497 ~k~y~G~---r~irv~s 510 (944)
T KOG4307|consen 497 TKFYPGH---RIIRVDS 510 (944)
T ss_pred cccccCc---eEEEeec
Confidence 6555555 7888864
No 148
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.87 E-value=2e-05 Score=78.36 Aligned_cols=91 Identities=21% Similarity=0.334 Sum_probs=74.4
Q ss_pred CCCCCCCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC---CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc
Q 020917 216 NTKDNPPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE---RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (320)
Q Consensus 216 ~~~~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~---~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~ 292 (320)
..++...++|||++||+..+++.+|+..|..+|.|.+|+|.+.. .-.|+||.|.+.+.+..|...|.|..|.. .
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~---g 441 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGN---G 441 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcccc---C
Confidence 33455568999999999999999999999999999999997542 24599999999999999999999999987 5
Q ss_pred eeEEEee--cCCCCCCCCC
Q 020917 293 GMRIQYS--KNPFGKRKDG 309 (320)
Q Consensus 293 ~l~v~~a--k~~~~~~~~~ 309 (320)
.+++.++ +.....+..-
T Consensus 442 ~~r~glG~~kst~ttr~~s 460 (975)
T KOG0112|consen 442 THRIGLGQPKSTPTTRLQS 460 (975)
T ss_pred cccccccccccccceeecc
Confidence 7777776 5544444443
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.85 E-value=2.4e-05 Score=68.12 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
.-..+.+||+|+.+.+|.+++...|+.++.+....+.. + ..|||+||+|.+.+.+.+|+. |||..+. |+.++
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~---~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP---GPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc---cccce
Confidence 45678999999999999999999999995554333332 2 247999999999999999999 9999998 79999
Q ss_pred EEEcccc
Q 020917 122 TEMAKKN 128 (320)
Q Consensus 122 v~~a~~~ 128 (320)
|.+..-.
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9887543
No 150
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.83 E-value=0.00017 Score=69.97 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCC----cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEE
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGE----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHT 122 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~----kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v 122 (320)
...+.|-|.|+|++++.|||.++|+.|...-+.|+...+. -|-|.|-|++.++|+.|...|++..|. .|.+++
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~---nr~V~l 941 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIR---NRVVSL 941 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccc---ceeEEE
Confidence 3345899999999999999999999996665555444332 299999999999999999999999997 377776
Q ss_pred E
Q 020917 123 E 123 (320)
Q Consensus 123 ~ 123 (320)
.
T Consensus 942 ~ 942 (944)
T KOG4307|consen 942 R 942 (944)
T ss_pred E
Confidence 4
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.80 E-value=4.6e-05 Score=67.89 Aligned_cols=78 Identities=14% Similarity=0.339 Sum_probs=63.8
Q ss_pred CCeEEEeCCCCCCCHHHHH------HhhccCCCeeEEEEEecCC-------cceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 223 CNTLFIGNLGESINEEELR------GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~------~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
.+-+||-+|++.+-.|++. +.|.+||.|..|.+-+... ..-.||.|.+.++|.+||....|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG- 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG- 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC-
Confidence 5678999999887777632 7899999999998853221 2235999999999999999999999999
Q ss_pred CCceeEEEeecCCC
Q 020917 290 GSVGMRIQYSKNPF 303 (320)
Q Consensus 290 ~~~~l~v~~ak~~~ 303 (320)
|.|+..|+..++
T Consensus 193 --r~lkatYGTTKY 204 (480)
T COG5175 193 --RVLKATYGTTKY 204 (480)
T ss_pred --ceEeeecCchHH
Confidence 999999987653
No 152
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.69 E-value=1.7e-05 Score=68.37 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHHHHhhc-cCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 238 EELRGLFS-AQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 238 e~L~~~F~-~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
|||...|. +||+|+++++-.+.. .|-++|.|...++|++|++.|||+.|.| ++|..+|+-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G---~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG---RPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC---CcceeeecC
Confidence 56666666 999999998754333 7899999999999999999999999999 999999864
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.57 E-value=0.00023 Score=47.13 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=43.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHH
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al 278 (320)
+.|-|.+.+.... ++++..|..||+|.++.+. ......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 4678888887754 6677799999999999885 34678999999999999985
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00015 Score=65.42 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=68.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHhhccCCCee--------EEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeC
Q 020917 220 NPPCNTLFIGNLGESINEEELRGLFSAQPGFK--------QMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIP 287 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~--------~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~ 287 (320)
..-+.++||-+|+..+++++|.+.|.+.|.|+ .|.|.++. .|+-|.|.|+|...|..|+.-++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 33478899999999999999999999998772 23343332 2889999999999999999999999999
Q ss_pred CCCCceeEEEeecCCC
Q 020917 288 SSGSVGMRIQYSKNPF 303 (320)
Q Consensus 288 g~~~~~l~v~~ak~~~ 303 (320)
+ .+|+|.++..+.
T Consensus 143 g---n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 G---NTIKVSLAERRT 155 (351)
T ss_pred C---CCchhhhhhhcc
Confidence 9 799999987774
No 155
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.37 E-value=0.00046 Score=60.60 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=57.9
Q ss_pred CCCeEEEeCC--CCCCCH---HHHHHhhccCCCeeEEEEEecCC-----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCC
Q 020917 222 PCNTLFIGNL--GESINE---EELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGS 291 (320)
Q Consensus 222 ~~~~LfV~NL--~~~~te---e~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~ 291 (320)
++.+|.++|+ +..+++ +++++.|.+||.|..|.|.-..+ .---||+|+..++|.+|+..|||+-|+|
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG--- 356 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG--- 356 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc---
Confidence 4555777777 233443 68899999999998887754332 2348999999999999999999999999
Q ss_pred ceeEEEe
Q 020917 292 VGMRIQY 298 (320)
Q Consensus 292 ~~l~v~~ 298 (320)
+.++..|
T Consensus 357 r~v~A~F 363 (378)
T KOG1996|consen 357 RVVSACF 363 (378)
T ss_pred eeeehee
Confidence 7887766
No 156
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.37 E-value=0.00015 Score=66.64 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=60.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-----------------CcceEEEEEcCHHHHHHHHHHhCC
Q 020917 221 PPCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----------------RHTVCFIEFEDVNSASSVHHNLQG 283 (320)
Q Consensus 221 ~~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-----------------~~g~aFV~F~~~~~A~~Al~~lnG 283 (320)
.+.+||.+.|||.+-.-+-|..+|+.+|.|+.|+|.... ++-+|||+|+..+.|.+|...||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 368999999999998889999999999999999997651 145999999999999999987755
Q ss_pred CeeCCCCCceeEEEe
Q 020917 284 AVIPSSGSVGMRIQY 298 (320)
Q Consensus 284 ~~l~g~~~~~l~v~~ 298 (320)
..-.. ..|+|.+
T Consensus 309 e~~wr---~glkvkL 320 (484)
T KOG1855|consen 309 EQNWR---MGLKVKL 320 (484)
T ss_pred hhhhh---hcchhhh
Confidence 44332 3455444
No 157
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.35 E-value=0.0011 Score=52.83 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=53.4
Q ss_pred CCCCCeEEEeCCC-----C-CCCH---HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 220 NPPCNTLFIGNLG-----E-SINE---EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 220 ~~~~~~LfV~NL~-----~-~~te---e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
+||.-|+.|+=+. . ..++ ++|.+.|..||.+.-+|++. +.-+|+|.+-.+|.+|+. |+|.++.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g-- 96 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNG-- 96 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETT--
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECC--
Confidence 3456677776444 1 2222 47889999999999999984 458999999999999994 99999999
Q ss_pred CceeEEEee
Q 020917 291 SVGMRIQYS 299 (320)
Q Consensus 291 ~~~l~v~~a 299 (320)
+.|+|...
T Consensus 97 -~~l~i~LK 104 (146)
T PF08952_consen 97 -RTLKIRLK 104 (146)
T ss_dssp -EEEEEEE-
T ss_pred -EEEEEEeC
Confidence 99999874
No 158
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.32 E-value=0.00057 Score=65.36 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=66.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAK 126 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~ 126 (320)
..+..|||.||=.-.|.-+|+.|+.+-++..... +|..-|..|||.|.+.++|.+-.++|+|+.|-..+++.|.+.|..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVR 520 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecc
Confidence 4578999999999999999999999773322222 444445789999999999999999999999966668999999985
Q ss_pred cc
Q 020917 127 KN 128 (320)
Q Consensus 127 ~~ 128 (320)
..
T Consensus 521 ~d 522 (718)
T KOG2416|consen 521 AD 522 (718)
T ss_pred hh
Confidence 43
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.30 E-value=0.00066 Score=51.73 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=36.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEeeCCcceEEEEeCCHHHHHHHHHHhcCc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYKGEKPMGFALFSTAQLAVAAKDALQEM 110 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~~~~kg~aFV~F~~~e~A~~A~~~lng~ 110 (320)
..|.|.+++..++.++|+++|+.| +.| |.+......|||.|.+.+.|..|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468999999999999999999999 666 444444478999999999999999877544
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.10 E-value=0.0035 Score=47.18 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=52.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEE------------EEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMK------------VLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~------------i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
.+-|.|-+.|+. ....|.+.|++||.|++.. -. .......-|+|++..+|.+||+ -||..|.|+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~-~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPI-PSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS- 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E--CCTTEEEEEESSHHHHHHHHT-TTTEEETTC-
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccC-CCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc-
Confidence 456888899987 5688889999999998875 11 2346799999999999999995 899999983
Q ss_pred CceeEEEeec
Q 020917 291 SVGMRIQYSK 300 (320)
Q Consensus 291 ~~~l~v~~ak 300 (320)
--+-|.|.+
T Consensus 82 -~mvGV~~~~ 90 (100)
T PF05172_consen 82 -LMVGVKPCD 90 (100)
T ss_dssp -EEEEEEE-H
T ss_pred -EEEEEEEcH
Confidence 344466654
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0017 Score=61.90 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=58.7
Q ss_pred CCeEEEeCCCCCCCH------HHHHHhhccCCCeeEEEEEec---CCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCce
Q 020917 223 CNTLFIGNLGESINE------EELRGLFSAQPGFKQMKVLRQ---ERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (320)
Q Consensus 223 ~~~LfV~NL~~~~te------e~L~~~F~~~G~i~~v~i~~~---~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~ 293 (320)
.++++|-|+|---.. .-|..+|+++|.|..+.+.-+ +.+||.|++|.+..+|..|++.|||+.|.-+ ++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn--Ht 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN--HT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--ce
Confidence 578999999853221 345589999999998887532 2389999999999999999999999999875 56
Q ss_pred eEEEe
Q 020917 294 MRIQY 298 (320)
Q Consensus 294 l~v~~ 298 (320)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 162
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.01 E-value=0.017 Score=52.08 Aligned_cols=73 Identities=7% Similarity=0.044 Sum_probs=55.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e---CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEE
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K---GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLH 121 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~ 121 (320)
..-.+|||||-+++|++||.+.+...+...-.-+++ + -+||||+|...+....++-|+.|-...|. |..-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH---GQ~P~ 155 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH---GQSPT 155 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec---CCCCe
Confidence 345789999999999999998888773332222222 1 24799999999999999999999999997 54444
Q ss_pred EE
Q 020917 122 TE 123 (320)
Q Consensus 122 v~ 123 (320)
|.
T Consensus 156 V~ 157 (498)
T KOG4849|consen 156 VL 157 (498)
T ss_pred ee
Confidence 43
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.94 E-value=0.0012 Score=59.02 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=58.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhh--hCCCccccEEEe----eCC-----cceE--EEEeCCHHHHHHHHHHhcCceeCcC
Q 020917 49 VRTIFITGLPDDVKERELQNLLR--WLPGYEASQVNY----KGE-----KPMG--FALFSTAQLAVAAKDALQEMIFDAE 115 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~--~~~~~~~~iv~~----~~~-----kg~a--FV~F~~~e~A~~A~~~lng~~~~~~ 115 (320)
..-+||-+|+..+-.|+.-.++. .||+-+|.|.++ ++. .+.+ ||+|.+.|+|.+++...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 34579999999988887443333 224444777544 321 1444 99999999999999999999998
Q ss_pred CCCeEEEEEccccc
Q 020917 116 TKSVLHTEMAKKNL 129 (320)
Q Consensus 116 ~gr~l~v~~a~~~~ 129 (320)
||.|+..|...+.
T Consensus 192 -Gr~lkatYGTTKY 204 (480)
T COG5175 192 -GRVLKATYGTTKY 204 (480)
T ss_pred -CceEeeecCchHH
Confidence 8999999987664
No 164
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.91 E-value=0.0013 Score=60.05 Aligned_cols=73 Identities=15% Similarity=0.404 Sum_probs=60.1
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEE
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRI 296 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v 296 (320)
..|.|.||.+.++.+++..||...|.|..++|+.+.+ .-.|||.|.|...+..|. .|.++.|-+ +.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvd---raliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVD---RALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeee---eeEEE
Confidence 3799999999999999999999999999999986333 458999999999998885 788888877 55444
Q ss_pred -Eeec
Q 020917 297 -QYSK 300 (320)
Q Consensus 297 -~~ak 300 (320)
-|+.
T Consensus 84 ~p~~~ 88 (479)
T KOG4676|consen 84 RPYGD 88 (479)
T ss_pred EecCC
Confidence 4443
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=0.003 Score=54.67 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=52.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---cceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
..|||.||...++-|.|.+.|..||.|....++-+-. .+-++|.|...-.|.+|+..++-.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 3599999999999999999999999996665543222 4678999999999999999885444443
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0011 Score=63.55 Aligned_cols=80 Identities=19% Similarity=0.413 Sum_probs=64.7
Q ss_pred CCCCCCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 219 DNPPCNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 219 ~~~~~~~LfV~NL~~~~tee~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
-..++++|+|.||-..+|.-+|+.++++-|. |.++ .| +.-+.-|||.|.+.++|..-+.+|||..-..+.-+.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3446899999999999999999999997765 4444 43 3345679999999999999999999997764444789999
Q ss_pred eec
Q 020917 298 YSK 300 (320)
Q Consensus 298 ~ak 300 (320)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 964
No 167
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.83 E-value=0.0045 Score=48.92 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCCCCeEEEeCCCCCC----CHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 220 NPPCNTLFIGNLGESI----NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~~----tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
.+|-.||.|+=|..++ +-..+.+.++.||.|.+|-+.. +--|.|.|.|..+|=.|+.+++.+. .| ..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s~~-pg---tm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQSRA-PG---TMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcCCC-CC---ceEE
Confidence 3456788887554443 3345556678999999998863 4569999999999999999999854 44 6899
Q ss_pred EEeec
Q 020917 296 IQYSK 300 (320)
Q Consensus 296 v~~ak 300 (320)
++|--
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 98853
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.80 E-value=0.00072 Score=58.35 Aligned_cols=66 Identities=14% Similarity=0.239 Sum_probs=57.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC---------c-------ceEEEEEcCHHHHHHHHHHhCCCee
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER---------H-------TVCFIEFEDVNSASSVHHNLQGAVI 286 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~---------~-------g~aFV~F~~~~~A~~Al~~lnG~~l 286 (320)
.-+||++|||+.++..-|+++|++||.|-.|.|..... + .-|.|+|.+...|-.....|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45799999999999999999999999999998854221 0 1478999999999999999999999
Q ss_pred CC
Q 020917 287 PS 288 (320)
Q Consensus 287 ~g 288 (320)
+|
T Consensus 154 gg 155 (278)
T KOG3152|consen 154 GG 155 (278)
T ss_pred CC
Confidence 99
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0052 Score=58.69 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=53.7
Q ss_pred CCcceEEEcCCCC--CCCHHHHHHHhhhCCCccccEEEe-------eCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLPD--DVKERELQNLLRWLPGYEASQVNY-------KGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp~--~~tee~L~~lF~~~~~~~~~iv~~-------~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
.....|+|-|+|- ....+.|+.++.+.+...|.++.+ .+.+||.|++|.+..+|..|++.|||..++. .
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk--n 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK--N 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc--c
Confidence 3456899999983 344555554333333333777665 2457999999999999999999999999963 5
Q ss_pred CeEEEE
Q 020917 118 SVLHTE 123 (320)
Q Consensus 118 r~l~v~ 123 (320)
.++.|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 666664
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.012 Score=39.99 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=44.0
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCC---CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQP---GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G---~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
..|+|+++. +++.+||+..|..|. ...+|..+.+. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 569999996 578899999999981 34577777654 3999999999999999876
No 171
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.54 E-value=0.0031 Score=58.19 Aligned_cols=72 Identities=24% Similarity=0.437 Sum_probs=58.2
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccC--CCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC-eeCCCCCceeEEEeec
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQ--PGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA-VIPSSGSVGMRIQYSK 300 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~--G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~-~l~g~~~~~l~v~~ak 300 (320)
+.||++||.+.++..||.++|... +.-..+ +++ .||+||.+.|..-|.+|++.|+|. ++.| +++.|.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k---~gyafvd~pdq~wa~kaie~~sgk~elqG---kr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK---SGYAFVDCPDQQWANKAIETLSGKVELQG---KRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee---cceeeccCCchhhhhhhHHhhchhhhhcC---ceeeccchh
Confidence 459999999999999999999854 222233 222 489999999999999999999998 5667 899999875
Q ss_pred CC
Q 020917 301 NP 302 (320)
Q Consensus 301 ~~ 302 (320)
.+
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 54
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.49 E-value=0.0081 Score=39.65 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=40.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC--CcceEEEEeCCHHHHHHHH
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG--EKPMGFALFSTAQLAVAAK 104 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~--~kg~aFV~F~~~e~A~~A~ 104 (320)
+.|-|.+.+.+..++ ++..|..| |.|+.+.- .+...||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~f----GeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASF----GEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhc----CCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 568899998877754 45588889 88887743 4699999999999999985
No 173
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.38 E-value=0.0091 Score=50.18 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=47.3
Q ss_pred CHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC--CCeeCCCCCceeEEEeecCC
Q 020917 236 NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ--GAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 236 tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln--G~~l~g~~~~~l~v~~ak~~ 302 (320)
..+.|+++|..|+.+..+...+.-+| ..|.|.+.+.|..|+..|+ +..+.| +.|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrR--i~v~f~~~~~A~~~r~~l~~~~~~~~g---~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRR--IRVVFESPESAQRARQLLHWDGTSFNG---KRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTE--EEEE-SSTTHHHHHHHTST--TSEETT---EE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCE--EEEEeCCHHHHHHHHHHhcccccccCC---CceEEEEcccc
Confidence 45889999999999999988864444 8999999999999999999 999999 89999999544
No 174
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.38 E-value=0.0024 Score=57.51 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCCcceEE-EcCCCCCCCHHHHHHHhhhCCCccccEEEee--------CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 46 HDEVRTIF-ITGLPDDVKERELQNLLRWLPGYEASQVNYK--------GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 46 ~~~~~~L~-V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~--------~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
..+..++| |+||+..+++++|+..|..+ +.|..++ ..+|||||.|.+..++..++.. +...++
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~--- 252 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG--- 252 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc---
Confidence 45566666 99999999999999777776 6665542 1259999999999999999886 777777
Q ss_pred CCeEEEEEcccccc
Q 020917 117 KSVLHTEMAKKNLF 130 (320)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (320)
++++.+.+......
T Consensus 253 ~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 253 GRPLRLEEDEPRPK 266 (285)
T ss_pred CcccccccCCCCcc
Confidence 79999998876543
No 175
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.34 E-value=0.00021 Score=70.93 Aligned_cols=58 Identities=21% Similarity=0.364 Sum_probs=49.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEe--cCC--cceEEEEEcCHHHHHHHHHH
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLR--QER--HTVCFIEFEDVNSASSVHHN 280 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~--~~~--~g~aFV~F~~~~~A~~Al~~ 280 (320)
..++||+||+..+.++||...|..+|.+..+++.. +.+ +|+|+|.|...+++.+|+..
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 46799999999999999999999999887776651 122 89999999999999999853
No 176
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.01 Score=56.24 Aligned_cols=62 Identities=29% Similarity=0.317 Sum_probs=48.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEee----CCcceEEEEeCCHHHHHHHHHH
Q 020917 45 AHDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYK----GEKPMGFALFSTAQLAVAAKDA 106 (320)
Q Consensus 45 ~~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~~----~~kg~aFV~F~~~e~A~~A~~~ 106 (320)
.-++.+|||||+||.-+|-++|-.+|+..++-...+ |... --+|-|=|.|++..+=.+||++
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 457899999999999999999999999553332222 3322 2359999999999999999873
No 177
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.27 E-value=0.0062 Score=54.89 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=61.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCC--CeeEEEEEecC----CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeE
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQP--GFKQMKVLRQE----RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMR 295 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G--~i~~v~i~~~~----~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~ 295 (320)
..-++|||||-+-+|++||.+....-| .|.+++++-++ +||||.|...+..+..+-|+.|--++|.|. .+.-
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ--~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ--SPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC--CCee
Confidence 356799999999999999999998877 46777775333 389999999999999999999999999884 4555
Q ss_pred EEee
Q 020917 296 IQYS 299 (320)
Q Consensus 296 v~~a 299 (320)
+.|-
T Consensus 157 ~~~N 160 (498)
T KOG4849|consen 157 LSYN 160 (498)
T ss_pred eccc
Confidence 5553
No 178
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.19 E-value=0.0066 Score=55.04 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCcccc------EEEe----eC--CcceEEEEeCCHHHHHHHHHHhcCceeCc
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEAS------QVNY----KG--EKPMGFALFSTAQLAVAAKDALQEMIFDA 114 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~------iv~~----~~--~kg~aFV~F~~~e~A~~A~~~lng~~~~~ 114 (320)
..+.+|||-+|+..+++++|.+.|..+..+.-. .|.+ .+ .|+-|.|.|.|...|+.|+..+++.+|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~- 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC- 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc-
Confidence 457799999999999999999999988332110 0111 11 3599999999999999999999999998
Q ss_pred CCCCeEEEEEcccccc
Q 020917 115 ETKSVLHTEMAKKNLF 130 (320)
Q Consensus 115 ~~gr~l~v~~a~~~~~ 130 (320)
+.+|+|..|.....
T Consensus 143 --gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 --GNTIKVSLAERRTG 156 (351)
T ss_pred --CCCchhhhhhhccC
Confidence 68999988876653
No 179
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.15 E-value=0.0035 Score=62.46 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=65.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~ 302 (320)
..+.++.|.+-+.+..-|..+|.+||.|.+....++- ..|.|+|.+.+.|..|+++|+|+++...| -+-+|.|+|.-
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs~~g-~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVSVTG-APSRVSFAKTL 374 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCcccccC-CceeEEecccc
Confidence 4456666667778888999999999999999987654 56999999999999999999999987544 58999999865
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.08 E-value=0.0023 Score=57.54 Aligned_cols=79 Identities=11% Similarity=0.243 Sum_probs=63.5
Q ss_pred CeEEEeCCCCCCCHHHHH---HhhccCCCeeEEEEEecCC-------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCce
Q 020917 224 NTLFIGNLGESINEEELR---GLFSAQPGFKQMKVLRQER-------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVG 293 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~---~~F~~~G~i~~v~i~~~~~-------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~ 293 (320)
+-+||-+|+..+..+++. +.|.+||.|.+|.+-++.. ..-++|+|...++|..||+..+|..++| +.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg---~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG---RA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh---hh
Confidence 456777887766555554 5899999999998876441 2258999999999999999999999999 88
Q ss_pred eEEEeecCCCCC
Q 020917 294 MRIQYSKNPFGK 305 (320)
Q Consensus 294 l~v~~ak~~~~~ 305 (320)
|+..|+..++-.
T Consensus 155 lka~~gttkycs 166 (327)
T KOG2068|consen 155 LKASLGTTKYCS 166 (327)
T ss_pred hHHhhCCCcchh
Confidence 999999887653
No 181
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.05 E-value=0.0035 Score=52.47 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=50.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhh-CCCc-cccEEE--e--eCC----cceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRW-LPGY-EASQVN--Y--KGE----KPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~-~~~~-~~~iv~--~--~~~----kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
.+..+|.|++||+++||+++.+.++. +... .-..+. . ... -.-|||.|.+.++...-++.++|+.|.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999987776 3211 001111 1 111 178999999999999999999999995444
Q ss_pred C--CeEEEEEccc
Q 020917 117 K--SVLHTEMAKK 127 (320)
Q Consensus 117 g--r~l~v~~a~~ 127 (320)
| ..-.|++|-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 4 3456677744
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.80 E-value=0.02 Score=41.09 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=40.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEE-eeCCcceEEEEeCCHHHHHHHHHHhcC
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN-YKGEKPMGFALFSTAQLAVAAKDALQE 109 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~-~~~~kg~aFV~F~~~e~A~~A~~~lng 109 (320)
.+..||+ +|..+...||.+||+.| |.|.. .- +-..|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspf----G~I~VsWi-~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPF----GQIYVSWI-NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCC----CCEEEEEE-CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccC----CcEEEEEE-cCCcEEEEeecHHHHHHHHHHhcc
Confidence 4566777 99999999999999999 66622 21 115799999999999999998853
No 183
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.78 E-value=0.04 Score=46.09 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=51.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhcc-CCCe---eEEEEEecCC------cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc
Q 020917 223 CNTLFIGNLGESINEEELRGLFSA-QPGF---KQMKVLRQER------HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV 292 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~-~G~i---~~v~i~~~~~------~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~ 292 (320)
...|.|++||+++||+++++.++. ++.- ..+.-..... -.-|||.|.+.++...-++.++|+.|-++.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999999998887 7765 3333211111 23699999999999999999999998664322
Q ss_pred --eeEEEee
Q 020917 293 --GMRIQYS 299 (320)
Q Consensus 293 --~l~v~~a 299 (320)
+-.|+||
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 4566665
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.75 E-value=0.19 Score=38.49 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=52.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
+.++.+...+.-++.++|..+.+.+- .|..++|+++.. +..+.++|.+.++|..=...+||+.|..-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 44555666666777777876666554 578999998654 77999999999999999999999999753
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.67 E-value=0.0052 Score=53.25 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=35.9
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcccc
Q 020917 87 KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKN 128 (320)
Q Consensus 87 kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~ 128 (320)
+|-++|.|...|+|++|++.|||..|. |++|..+++...
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~~---G~pi~ae~~pvT 148 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWYN---GRPIHAELSPVT 148 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCcccc---CCcceeeecCcC
Confidence 599999999999999999999999998 899999988554
No 186
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.66 E-value=0.067 Score=40.23 Aligned_cols=71 Identities=10% Similarity=0.078 Sum_probs=50.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEee---------------CCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYK---------------GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~---------------~~kg~aFV~F~~~e~A~~A~~~lng~~~ 112 (320)
..+-|.|-+.|...+ ..+.+.|+.| |.|+... ...+.--|+|+++.+|.+||. -||..+
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~ 78 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIF 78 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEE
Confidence 356689999999855 6677899999 8876653 234889999999999999998 999999
Q ss_pred CcCCCC-eEEEEEccc
Q 020917 113 DAETKS-VLHTEMAKK 127 (320)
Q Consensus 113 ~~~~gr-~l~v~~a~~ 127 (320)
. |. -+-|.|+++
T Consensus 79 ~---g~~mvGV~~~~~ 91 (100)
T PF05172_consen 79 S---GSLMVGVKPCDP 91 (100)
T ss_dssp T---TCEEEEEEE-HH
T ss_pred c---CcEEEEEEEcHH
Confidence 7 44 444667643
No 187
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.59 E-value=0.048 Score=43.67 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=47.1
Q ss_pred CCcceEEEcCCC-----C-CCCHH---HHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 47 DEVRTIFITGLP-----D-DVKER---ELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 47 ~~~~~L~V~nLp-----~-~~tee---~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
++..||.|.=+. . ...++ +|.+.|..| |.++-++--.+.=+|+|.+-++|.+|++ ++|..+. |
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~----GevvLvRfv~~~mwVTF~dg~sALaals-~dg~~v~---g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQY----GEVVLVRFVGDTMWVTFRDGQSALAALS-LDGIQVN---G 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCC----S-ECEEEEETTCEEEEESSCHHHHHHHH-GCCSEET---T
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhC----CceEEEEEeCCeEEEEECccHHHHHHHc-cCCcEEC---C
Confidence 456677777666 2 23332 344555555 6554333223688999999999999998 9999997 8
Q ss_pred CeEEEEEccc
Q 020917 118 SVLHTEMAKK 127 (320)
Q Consensus 118 r~l~v~~a~~ 127 (320)
+.|+|..-.+
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999976543
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.33 E-value=0.029 Score=54.82 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=62.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
+..++||+|+-..+..+-++.+....|.|.+++.+. |||..|..+..+..|+..|+-..+.| +.|-+.--++
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~---~kl~~~~d~q 110 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDD---QKLIENVDEQ 110 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCc---chhhccchhh
Confidence 467899999999999999999999999999887763 89999999999999999999999988 6666555444
Q ss_pred C
Q 020917 302 P 302 (320)
Q Consensus 302 ~ 302 (320)
.
T Consensus 111 ~ 111 (668)
T KOG2253|consen 111 T 111 (668)
T ss_pred h
Confidence 3
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.31 E-value=0.13 Score=37.02 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=41.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
.++++|. .|.+=...||.++|+.||.|. |..+.+ .-|||...+.+.|..|++.+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 4667777 888888899999999999964 445543 569999999999999999886
No 190
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.28 E-value=0.024 Score=52.56 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=48.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccc-cEEEe-------e---------CCcceEEEEeCCHHHHHHHHHHhcC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEA-SQVNY-------K---------GEKPMGFALFSTAQLAVAAKDALQE 109 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~-~iv~~-------~---------~~kg~aFV~F~~~e~A~~A~~~lng 109 (320)
-+.++|.+.|||.+-.-|.|.++|..++.+.. .|+.- + ..+-+|||+|...+.|++|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 57899999999999888999999999943321 11110 1 1247999999999999999998853
No 191
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.22 E-value=0.013 Score=50.84 Aligned_cols=61 Identities=13% Similarity=0.272 Sum_probs=50.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-----e-----------CCc----ceEEEEeCCHHHHHHHHHHhc
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-----K-----------GEK----PMGFALFSTAQLAVAAKDALQ 108 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-----~-----------~~k----g~aFV~F~~~e~A~~A~~~ln 108 (320)
...||+++||+.+.-.-||++|+.| |.|-++ + ++. .-|+|+|.+...|....+.||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999 555332 0 111 458899999999999999999
Q ss_pred CceeC
Q 020917 109 EMIFD 113 (320)
Q Consensus 109 g~~~~ 113 (320)
|..|.
T Consensus 150 n~~Ig 154 (278)
T KOG3152|consen 150 NTPIG 154 (278)
T ss_pred CCccC
Confidence 99997
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.15 E-value=0.098 Score=35.58 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=40.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccE-EEeeCCcceEEEEeCCHHHHHHHHHHh
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQ-VNYKGEKPMGFALFSTAQLAVAAKDAL 107 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i-v~~~~~kg~aFV~F~~~e~A~~A~~~l 107 (320)
..|+|+|+ .+++.+|++..|..|+...+.. |..-.. ..|=|.|.|.+.|.+|+.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 46999999 4578899999999994433322 332111 24779999999999999765
No 193
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.09 E-value=0.084 Score=37.37 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=41.4
Q ss_pred eEEEe-CCCCCCCHHHHHHhhccCCC-----eeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 225 TLFIG-NLGESINEEELRGLFSAQPG-----FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 225 ~LfV~-NL~~~~tee~L~~~F~~~G~-----i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+|||. +--+.++..+|..+++..+. |-.|++.. .|+||+-. .+.|..+++.|++..+.| ++|+|+-
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~-~~~a~~v~~~l~~~~~~g---k~v~ve~ 73 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVP-EEVAEKVLEALNGKKIKG---KKVRVER 73 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE--TT-HHHHHHHHTT--SSS-------EEE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEEC-HHHHHHHHHHhcCCCCCC---eeEEEEE
Confidence 46652 33456889999999988764 56777763 67999966 468999999999999999 9999975
Q ss_pred e
Q 020917 299 S 299 (320)
Q Consensus 299 a 299 (320)
|
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 4
No 194
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.56 E-value=0.059 Score=52.72 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEE
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEM 124 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~ 124 (320)
.++.-+|||+|+-+.+..+-++.++... |.|...+..+ |||.+|.+..-+.+|+..++-..++ |..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~---~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNID---DQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh-hcccchhhHHHHHHHHHHhcccCCC---cchhhccc
Confidence 3667899999999999999999999888 6665554333 9999999999999999988887776 45555443
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.48 E-value=0.27 Score=46.13 Aligned_cols=68 Identities=15% Similarity=0.242 Sum_probs=60.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCC--cceEEEEEcCHHHHHHHHHHhCCCeeCCCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQER--HTVCFIEFEDVNSASSVHHNLQGAVIPSSG 290 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~--~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~ 290 (320)
+++|+|--+|-.++..||..++..+- .|.+++|++++. +-.+.|+|.+.++|..-...+||..|...+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLE 144 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCC
Confidence 78999999999999999999988665 689999998654 779999999999999999999999998643
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.81 E-value=0.6 Score=35.76 Aligned_cols=66 Identities=9% Similarity=-0.030 Sum_probs=48.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e---CCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 47 DEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K---GEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 47 ~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~---~~kg~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
.....+.+...|+.++.++|..+.+.+..... .+++ + .++=.+++.|++.++|......+||..|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~-~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIE-HIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEE-EEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44566677777788888888877776622222 2222 2 24578999999999999999999999984
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.69 E-value=0.039 Score=51.88 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=58.5
Q ss_pred CCeEEEeCCCCCC-CHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecC
Q 020917 223 CNTLFIGNLGESI-NEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKN 301 (320)
Q Consensus 223 ~~~LfV~NL~~~~-tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~ 301 (320)
.+.|-+.-.++.. +.++|...|.+||.|..|.+.... --|.|+|.+..+|-+|. +.+|..|++ +.|||-|-+.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~-~s~~avlnn---r~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAY-ASHGAVLNN---RFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchh-ccccceecC---ceeEEEEecC
Confidence 4555565555543 458999999999999999886432 34899999999998886 699999999 9999999765
No 198
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.15 E-value=0.12 Score=45.00 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=59.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC---CcceEEEEeCCHHHHHHHHHHhc-CceeCcCCCCeEEEEEc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG---EKPMGFALFSTAQLAVAAKDALQ-EMIFDAETKSVLHTEMA 125 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~---~kg~aFV~F~~~e~A~~A~~~ln-g~~~~~~~gr~l~v~~a 125 (320)
..|||.||...+.-|.|...|+.|+.++..|+.+.. ..+-++|.|...-.|.+|+..++ |--.+..++++.-|+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 679999999999999999999999877777766632 23889999999999999998774 22234444666666543
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.15 E-value=0.45 Score=32.82 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 60 DVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 60 ~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
.++.+||+..+..| .-.-......|| ||.|.+.++|+++....+|..+.
T Consensus 11 ~~~v~d~K~~Lr~y----~~~~I~~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY----RWDRIRDDRTGF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcC----CcceEEecCCEE-EEEECChHHHHHHHHhcCCCEEE
Confidence 47789999999988 433111122364 89999999999999999999886
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.67 E-value=0.24 Score=41.68 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=41.2
Q ss_pred HHHHHHHhhhCCCccccEEEeeCCc--ceEEEEeCCHHHHHHHHHHhc--CceeCcCCCCeEEEEEcccc
Q 020917 63 ERELQNLLRWLPGYEASQVNYKGEK--PMGFALFSTAQLAVAAKDALQ--EMIFDAETKSVLHTEMAKKN 128 (320)
Q Consensus 63 ee~L~~lF~~~~~~~~~iv~~~~~k--g~aFV~F~~~e~A~~A~~~ln--g~~~~~~~gr~l~v~~a~~~ 128 (320)
.+.|+++|..+ +.++.+.-.+ +-..|.|.+.++|.+|+..|+ +..+. |..++|.|+...
T Consensus 9 ~~~l~~l~~~~----~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~---g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTY----DPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFN---GKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-----SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEET---TEE-EEE----S
T ss_pred HHHHHHHHHhc----CCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccC---CCceEEEEcccc
Confidence 46788888888 6665553222 568899999999999999999 88998 789999999543
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.35 E-value=1.1 Score=40.16 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=49.1
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
=+=|.+.++. ...-|..+|.+||.|++...- .+..+-.|.|.++-+|++||. -||+.|+|
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeecc
Confidence 3556677765 457788999999999887654 445789999999999999995 89999998
No 202
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.91 E-value=0.73 Score=36.68 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=53.5
Q ss_pred CCCcceEEEcCCCCCCC-HHHHHHHhhhCCCccccEEEee-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEE
Q 020917 46 HDEVRTIFITGLPDDVK-ERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTE 123 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~t-ee~L~~lF~~~~~~~~~iv~~~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~ 123 (320)
+.+-.||.|+=|..++. .|||+.+..++ ...|.|..++ -.+-.|.|.|+|..+|-+|+.++....- |.-+.+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~L-s~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s~~p----gtm~qCs 157 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRL-SVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQSRAP----GTMFQCS 157 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHH-HhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcCCCC----CceEEee
Confidence 56678999988876643 45677665544 1227776654 2457899999999999999999876433 5777777
Q ss_pred Ec
Q 020917 124 MA 125 (320)
Q Consensus 124 ~a 125 (320)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 75
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.58 E-value=0.56 Score=45.26 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=47.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhcc--CCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHh
Q 020917 223 CNTLFIGNLGESINEEELRGLFSA--QPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNL 281 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~--~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~l 281 (320)
.+.+.|+-|+..+-+|+++-||.. ...+.+|.+..+.+ =||+|++..+|++|.+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHH
Confidence 577888999999999999999974 56788888865432 699999999999998765
No 204
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=91.49 E-value=1.2 Score=39.56 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=39.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccE---EEeeCCcceEEEEeCCHH
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQ---VNYKGEKPMGFALFSTAQ 98 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i---v~~~~~kg~aFV~F~~~e 98 (320)
...-|||+||+.++...||+..+.+. +|+ +.+++..|-||++|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~----~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKR----ECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhc----CCCceeEeeecCCcceeEecCCcc
Confidence 35569999999999999999999998 777 445788899999997753
No 205
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.20 E-value=0.66 Score=41.25 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=46.6
Q ss_pred HHHHHHHhhhCCCccccEEEeeCC-----cceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcccccc
Q 020917 63 ERELQNLLRWLPGYEASQVNYKGE-----KPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLF 130 (320)
Q Consensus 63 ee~L~~lF~~~~~~~~~iv~~~~~-----kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~~ 130 (320)
++++++-+++|+.+..+||-...+ .---||+|...++|.+|+=.|||.-|. ||.++..|-+....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG---Gr~v~A~Fyn~ekf 369 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG---GRVVSACFYNLEKF 369 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec---ceeeeheeccHHhh
Confidence 456778888884443333322211 256899999999999999999999998 89988877654443
No 206
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=0.96 Score=43.91 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=62.9
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccC----CCeeEEEEEec--------------C---------------------
Q 020917 220 NPPCNTLFIGNLGES-INEEELRGLFSAQ----PGFKQMKVLRQ--------------E--------------------- 259 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~-~tee~L~~~F~~~----G~i~~v~i~~~--------------~--------------------- 259 (320)
.-++++|-|-||.++ +..+||.-+|+.| |.|++|.|... +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999986 8889999998865 48999999531 1
Q ss_pred ----------------CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 260 ----------------RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 260 ----------------~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
.-.||.|+|.+++.|........|.+|..++ ..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~-~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA-NKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc-ceeeeee
Confidence 0139999999999999999999999998753 5666666
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.09 E-value=0.28 Score=49.49 Aligned_cols=75 Identities=20% Similarity=0.095 Sum_probs=60.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCc--ceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccc
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEK--PMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~k--g~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~ 127 (320)
.+.++.|.+-..+..-|-.+|+.| |.+....+.| ..|.|+|.+.+.|-.|+++|+|+++. ..|-+-+|.+|+.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~y----g~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs-~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDY----GSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVS-VTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhh----cchhhheecccccchhhhhHHHHHHHHhhhhhcCCccc-ccCCceeEEeccc
Confidence 345666777888899999999999 7776554434 78999999999999999999999982 1388999999976
Q ss_pred cc
Q 020917 128 NL 129 (320)
Q Consensus 128 ~~ 129 (320)
..
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.41 E-value=2.1 Score=30.14 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHhhhCCCccc-cEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEc
Q 020917 59 DDVKERELQNLLRWLPGYEA-SQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMA 125 (320)
Q Consensus 59 ~~~tee~L~~lF~~~~~~~~-~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a 125 (320)
..++..+|..++....++.+ .|-++.-...|+||+-.. +.|+.+++.|++..+. |+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~---gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIK---GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SS---S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCC---CeeEEEEEC
Confidence 45788899999988855543 333333234799999854 4889999999999998 899999864
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.67 E-value=2.5 Score=29.19 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=40.1
Q ss_pred CCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 234 SINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 234 ~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
.++-++++..+.+|+- ..|+.. . .| =||.|.|..+|.++..+.||..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d--~-tG-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD--R-TG-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec--C-CE-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 4678999999999964 344332 2 24 4999999999999999999999887
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.04 E-value=1.4 Score=32.24 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.2
Q ss_pred CCeEEEeCCCCCCCHHHHHHhh
Q 020917 223 CNTLFIGNLGESINEEELRGLF 244 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F 244 (320)
.++|.|.|||..+++|+|++..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 6889999999999999998643
No 211
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.97 E-value=5.9 Score=35.29 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=39.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhccCCCe-eEEEEEecCCcceEEEEEcCHHH
Q 020917 222 PCNTLFIGNLGESINEEELRGLFSAQPGF-KQMKVLRQERHTVCFIEFEDVNS 273 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~~~G~i-~~v~i~~~~~~g~aFV~F~~~~~ 273 (320)
..+-|+|+||+.++-..||++.+.+-+.+ .++.. ....|-||++|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--KGHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee--ecCCcceeEecCCccC
Confidence 35669999999999999999999888764 45544 3456889999998543
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.76 E-value=0.28 Score=44.41 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=56.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---e-CC---c----ceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---K-GE---K----PMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~-~~---k----g~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
..-+||-+|+..+..+.+.+--+. |+.+|.|.++ + .+ . --++|+|...|+|..||+..+|..++ |
T Consensus 77 knlvyvvgl~~~~ade~~l~~~ey-fgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g 152 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEY-FGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---G 152 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccc-ccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---h
Confidence 456799999988766655433333 3444666444 2 11 1 44899999999999999999999998 7
Q ss_pred CeEEEEEcccccc
Q 020917 118 SVLHTEMAKKNLF 130 (320)
Q Consensus 118 r~l~v~~a~~~~~ 130 (320)
+.|+..+...+..
T Consensus 153 ~~lka~~gttkyc 165 (327)
T KOG2068|consen 153 RALKASLGTTKYC 165 (327)
T ss_pred hhhHHhhCCCcch
Confidence 9999888876643
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=82.89 E-value=0.86 Score=37.74 Aligned_cols=74 Identities=12% Similarity=0.229 Sum_probs=54.4
Q ss_pred CeEEEeCCCCCCCH-----HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCc-eeEEE
Q 020917 224 NTLFIGNLGESINE-----EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSV-GMRIQ 297 (320)
Q Consensus 224 ~~LfV~NL~~~~te-----e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~-~l~v~ 297 (320)
+++++.+++.++-. .....+|.+|-....+++.+ ..+..-|.|.+.+.|..|...+|++.|.| + .|+.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~~---~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFNG---KNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccCC---CceEEEE
Confidence 56778888765333 24446777777766666654 23457789999999999999999999999 5 88887
Q ss_pred eecCC
Q 020917 298 YSKNP 302 (320)
Q Consensus 298 ~ak~~ 302 (320)
|+-.-
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 76443
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.17 E-value=7 Score=38.24 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHhhhCCCccccEEEee-----------------CC---------------------
Q 020917 46 HDEVRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYK-----------------GE--------------------- 86 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~-~tee~L~~lF~~~~~~~~~iv~~~-----------------~~--------------------- 86 (320)
..++++|=|.|+.++ +.-+||..+|+.|.-.-|.|+.++ +-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999977 899999999999955555554441 11
Q ss_pred ----------------c-ceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 87 ----------------K-PMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 87 ----------------k-g~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
+ =||.|+|.+.+.|.+..+.++|+.|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 1 48999999999999999999999995
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.80 E-value=6.8 Score=37.13 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=52.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccE--EEee-CCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQ--VNYK-GEKPMGFALFSTAQLAVAAKDALQEMIF 112 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i--v~~~-~~kg~aFV~F~~~e~A~~A~~~lng~~~ 112 (320)
...|.|=.+|..+|..||..++..+-.....| |+.. .++=..+|.|++.++|....+.+||..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 78999999999999999999988773322222 3321 3467899999999999999999999998
No 216
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=80.56 E-value=4 Score=39.68 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=42.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhC--CCccccEEEeeCCcceEEEEeCCHHHHHHHHHHh
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWL--PGYEASQVNYKGEKPMGFALFSTAQLAVAAKDAL 107 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~--~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~l 107 (320)
.+.|+++.||+.+-+|+++.||..- ..+..|-.... .-=||+|++..||..|...|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N---~nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN---DNWYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec---CceEEEeecchhHHHHHHHH
Confidence 5778999999999999999999863 22223322222 34689999999999998655
No 217
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=4.9 Score=37.44 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=48.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCcee
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIF 112 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~ 112 (320)
=-+.|-|.++|.....|||..+|+.|.+---.|.+|. ...||-.|.+...|..|+. | ++.|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt-~-kh~~ 450 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT-L-KHDW 450 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh-c-cCce
Confidence 4688999999999999999999999955444454443 2589999999999999987 4 5555
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.49 E-value=20 Score=32.40 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=44.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeC-Cc-ceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNYKG-EK-PMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~-~k-g~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
=|=|-+++...+ .-|..+|+++ |.||+.-. +. .+=+|.|.+.-+|.+||. -||.-|+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~c----G~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRC----GEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhh----CeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 355567777655 4567789999 98888743 22 899999999999999998 8898886
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.51 E-value=3.5 Score=38.39 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=44.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEEecCCcceEEEEEcCHHHHHHHHH
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~ 279 (320)
-++|-|+|.|...-.+||..+|+.|++ =..|+.+. ...+|-.|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD---dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD---DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee---cceeEEeecchHHHHHHhh
Confidence 478999999999999999999999985 34555553 3569999999999999985
No 220
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=76.41 E-value=2 Score=40.88 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=53.9
Q ss_pred cceEEEcCCCCC-CCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEccc
Q 020917 49 VRTIFITGLPDD-VKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKK 127 (320)
Q Consensus 49 ~~~L~V~nLp~~-~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~ 127 (320)
.+.|-+.-.|.. -|.++|-..|..|+.++-+.+... .-.|.|+|.+..+|-+|-. ..+..|. +|.|+|.|-++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avln---nr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLN---NRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceec---CceeEEEEecC
Confidence 444555555555 457789999999944444333332 4679999999999977765 7799998 69999999876
Q ss_pred c
Q 020917 128 N 128 (320)
Q Consensus 128 ~ 128 (320)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.64 E-value=9 Score=31.87 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=50.3
Q ss_pred ceEEEcCCCCCC-CHHHHHHHhhhCCCccccEEEee--CCcceEEEEeCCHHHHHHHHHHhcCceeCcCCCC-eEEEEEc
Q 020917 50 RTIFITGLPDDV-KERELQNLLRWLPGYEASQVNYK--GEKPMGFALFSTAQLAVAAKDALQEMIFDAETKS-VLHTEMA 125 (320)
Q Consensus 50 ~~L~V~nLp~~~-tee~L~~lF~~~~~~~~~iv~~~--~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~gr-~l~v~~a 125 (320)
.++++.+++..+ ++.+.+..|+..|......+-++ .+.+.--|.|.+++.|..|.-.+++..|. |+ .++.-++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~---~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFN---GKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccC---CCceEEEEEc
Confidence 458888888663 33445555555533223332222 12356678999999999999999999997 55 7887777
Q ss_pred ccc
Q 020917 126 KKN 128 (320)
Q Consensus 126 ~~~ 128 (320)
...
T Consensus 88 Q~~ 90 (193)
T KOG4019|consen 88 QPG 90 (193)
T ss_pred cCC
Confidence 543
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=66.53 E-value=2.3 Score=31.15 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCC
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLP 74 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~ 74 (320)
-.++|.|+|||....||+|++.++-+|
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~LeIhF 77 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLEIHF 77 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEEEEE
Confidence 378999999999999999999887663
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.29 E-value=2.8 Score=37.07 Aligned_cols=68 Identities=13% Similarity=0.350 Sum_probs=46.4
Q ss_pred CCHHHHHHhhccCCCeeEEEEEe---------cCC-----cce---------EEEEEcCHHHHHHHHHHhCCCeeC--CC
Q 020917 235 INEEELRGLFSAQPGFKQMKVLR---------QER-----HTV---------CFIEFEDVNSASSVHHNLQGAVIP--SS 289 (320)
Q Consensus 235 ~tee~L~~~F~~~G~i~~v~i~~---------~~~-----~g~---------aFV~F~~~~~A~~Al~~lnG~~l~--g~ 289 (320)
-+++-|+..|..||.|..|+|.- ... +|| |||+|-....-..||.+|.|+.+. |.
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 56789999999999999888731 111 333 346677777778899999888663 21
Q ss_pred CC---ceeEEEeecCC
Q 020917 290 GS---VGMRIQYSKNP 302 (320)
Q Consensus 290 ~~---~~l~v~~ak~~ 302 (320)
++ -.++|.|.+++
T Consensus 253 ~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRSR 268 (445)
T ss_pred Ccccccccccccchhh
Confidence 11 24778777665
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.89 E-value=10 Score=29.35 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=26.0
Q ss_pred eEEEeCCCCC---------CCHHHHHHhhccCCCeeEEEEEecCC--cceEEEEEcCHHHH
Q 020917 225 TLFIGNLGES---------INEEELRGLFSAQPGFKQMKVLRQER--HTVCFIEFEDVNSA 274 (320)
Q Consensus 225 ~LfV~NL~~~---------~tee~L~~~F~~~G~i~~v~i~~~~~--~g~aFV~F~~~~~A 274 (320)
++.|-|++.. .+.++|++.|..|..++..-+. +.. .|+++|+|..--..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~-~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLY-GKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEE-ETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECc-CCCCCcEEEEEEECCChHH
Confidence 4666777533 3458999999999987644443 333 78999999964443
No 225
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.64 E-value=13 Score=37.96 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=4.8
Q ss_pred EcCCCCCCCH
Q 020917 54 ITGLPDDVKE 63 (320)
Q Consensus 54 V~nLp~~~te 63 (320)
+-.||+..+.
T Consensus 607 aPvlP~gLkp 616 (1102)
T KOG1924|consen 607 APVLPFGLKP 616 (1102)
T ss_pred cccCCCCCCc
Confidence 3345555443
No 226
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=56.12 E-value=2.6 Score=40.86 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=52.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
.++||++|++++++-.+|..+|..+..++.+-+-...- .-++.|.|..--.-..|.-+|||..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 57899999999999999999999999998887742111 3468899987667777777888877765
No 227
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=54.90 E-value=16 Score=32.83 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecC-----------CcceEEEEEcCHHHHHH----HHHHhCCC--e
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQE-----------RHTVCFIEFEDVNSASS----VHHNLQGA--V 285 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~-----------~~g~aFV~F~~~~~A~~----Al~~lnG~--~ 285 (320)
++.|...|+..+++-.++...|.+||.|++|.++.+. ......+.|-+.+.+.. .++.|+-+ .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6779999999999999999999999999999998755 13578889988877544 33334332 3
Q ss_pred eCCCCCceeEEEeecCC
Q 020917 286 IPSSGSVGMRIQYSKNP 302 (320)
Q Consensus 286 l~g~~~~~l~v~~ak~~ 302 (320)
+.. ..|+|+|-.-.
T Consensus 95 L~S---~~L~lsFV~l~ 108 (309)
T PF10567_consen 95 LKS---ESLTLSFVSLN 108 (309)
T ss_pred cCC---cceeEEEEEEe
Confidence 444 68888886543
No 228
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=54.57 E-value=45 Score=24.40 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=35.7
Q ss_pred HHHHHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 237 EEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 237 ee~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
.+.+++++.+.| .++++.+....-..+.++++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 366788888888 5888888765556789999999999888765554
No 229
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=54.32 E-value=63 Score=21.59 Aligned_cols=49 Identities=8% Similarity=0.145 Sum_probs=30.8
Q ss_pred HHHHHHhhccCC-CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCee
Q 020917 237 EEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI 286 (320)
Q Consensus 237 ee~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l 286 (320)
=.++.++|.+.| +|.++......++++.-+.+.+.+.|.++++ =+|+.+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~-~~G~~v 64 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK-EAGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH-HCCCEE
Confidence 367888898887 6888877654445555555666555555553 245543
No 230
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=50.93 E-value=57 Score=20.84 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHHHHhhccCC-CeeEEEEEecC-CcceEEEEEcCHHHHHHHH
Q 020917 238 EELRGLFSAQP-GFKQMKVLRQE-RHTVCFIEFEDVNSASSVH 278 (320)
Q Consensus 238 e~L~~~F~~~G-~i~~v~i~~~~-~~g~aFV~F~~~~~A~~Al 278 (320)
.++.+++.+.| .|.++.+.... +++...+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 56777888887 68888776543 4667777788877777665
No 231
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=50.85 E-value=57 Score=22.78 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 238 EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 238 e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
+++++.+.++| +...++-.-...++.|+-+.+.+.+.++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777888898 677777532226799999989999988887763
No 232
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=49.98 E-value=26 Score=32.65 Aligned_cols=69 Identities=12% Similarity=0.178 Sum_probs=49.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCC-ccccEEE-----eeCC-cceEEEEeCCHHHHHHHHHHhcCceeCcCCC
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPG-YEASQVN-----YKGE-KPMGFALFSTAQLAVAAKDALQEMIFDAETK 117 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~-~~~~iv~-----~~~~-kg~aFV~F~~~e~A~~A~~~lng~~~~~~~g 117 (320)
-..|.|.+||...++++|.+-+..|.. ++..-.. .... .+.|||.|...++...-....+|+.|.+..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 467999999999999999988888722 1111111 1111 2899999999999888888899998854334
No 233
>PRK10905 cell division protein DamX; Validated
Probab=49.89 E-value=1.5e+02 Score=27.17 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=36.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEeeCCcc---eEEE--EeCCHHHHHHHHHHhcC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNYKGEKP---MGFA--LFSTAQLAVAAKDALQE 109 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~~~~kg---~aFV--~F~~~e~A~~A~~~lng 109 (320)
....-+|-|+.+.. ++.|+++..++. ....++..+...| |-.+ .|.+.++|++|++.|-.
T Consensus 244 pa~~YTLQL~A~Ss---~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 244 PSSHYTLQLSSSSN---YDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCCceEEEEEecCC---HHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 34456777777765 677777777772 2222322222222 2222 59999999999997753
No 234
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=49.38 E-value=74 Score=30.05 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=60.4
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHhhccC---C-CeeEEEEEecC-----------------------------------
Q 020917 220 NPPCNTLFIGNLGES-INEEELRGLFSAQ---P-GFKQMKVLRQE----------------------------------- 259 (320)
Q Consensus 220 ~~~~~~LfV~NL~~~-~tee~L~~~F~~~---G-~i~~v~i~~~~----------------------------------- 259 (320)
+.++.+|-|-||.++ +...+|.-.|+.| | .|..|.|....
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 456889999999986 8888999888754 4 57778774310
Q ss_pred ---------------Cc-------------------ceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeec
Q 020917 260 ---------------RH-------------------TVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSK 300 (320)
Q Consensus 260 ---------------~~-------------------g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak 300 (320)
.. .||.|.|.+.+.+.....+..|.++..+. ..+-+.|--
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~sa-n~~DLRfvP 296 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSA-NVLDLRFVP 296 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccccc-ceeeeeecC
Confidence 01 28999999999999999999999998752 566666643
No 235
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=49.18 E-value=37 Score=27.50 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=39.8
Q ss_pred eEEEcCCCC-CCCHHHHHHHhhhCCCccccEEEeeCC--cceEEEEeCCHHHHHHHHHHhc
Q 020917 51 TIFITGLPD-DVKERELQNLLRWLPGYEASQVNYKGE--KPMGFALFSTAQLAVAAKDALQ 108 (320)
Q Consensus 51 ~L~V~nLp~-~~tee~L~~lF~~~~~~~~~iv~~~~~--kg~aFV~F~~~e~A~~A~~~ln 108 (320)
..|+|+|.. ..+-++|+..+..........++.+.. -+.+.|+|..+.+|..-+..|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKVEPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeeccccCceEEEEEechHHHHHHHHHHh
Confidence 467888872 245566777777764444444555433 2899999999999888777664
No 236
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=47.74 E-value=4.3 Score=37.22 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=40.1
Q ss_pred HHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCC
Q 020917 237 EEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGA 284 (320)
Q Consensus 237 ee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~ 284 (320)
...+.++.++.|+|..-.+.+--+.|.+||-....+++.++++.|.++
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 367778888999887666665567899999999999999999999876
No 237
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.98 E-value=14 Score=22.10 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=10.5
Q ss_pred CCCCHHHHHHhhccCCC
Q 020917 233 ESINEEELRGLFSAQPG 249 (320)
Q Consensus 233 ~~~tee~L~~~F~~~G~ 249 (320)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36899999999987653
No 238
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.64 E-value=3 Score=39.29 Aligned_cols=80 Identities=9% Similarity=-0.098 Sum_probs=61.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEe
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQY 298 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ 298 (320)
+...|+..|+-.++++++.-+|.-||-|..+.+-+-.. +-.+||+-.. +.|.-+++-+.-..+.| -.+++.+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~---~~~r~~~ 78 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFE---SQDRKAV 78 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhh---hhhhhhc
Confidence 35678889999999999999999999998887754222 4578888654 56777888777777777 5888888
Q ss_pred ecCCCCCC
Q 020917 299 SKNPFGKR 306 (320)
Q Consensus 299 ak~~~~~~ 306 (320)
+++.+-.|
T Consensus 79 ~~~s~~~r 86 (572)
T KOG4365|consen 79 SPSSSEKR 86 (572)
T ss_pred Cchhhhhh
Confidence 87776544
No 239
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=42.96 E-value=44 Score=26.51 Aligned_cols=56 Identities=5% Similarity=-0.063 Sum_probs=36.2
Q ss_pred ceEEEcCCC--CCCCHHHHHHHhhhCCCccccEEEeeCCcceEEEEeCCHHHHHHHHH
Q 020917 50 RTIFITGLP--DDVKERELQNLLRWLPGYEASQVNYKGEKPMGFALFSTAQLAVAAKD 105 (320)
Q Consensus 50 ~~L~V~nLp--~~~tee~L~~lF~~~~~~~~~iv~~~~~kg~aFV~F~~~e~A~~A~~ 105 (320)
+...|+.+- ...+.+.|...+...-...+.+-...-..++..+.|.+.+++.++++
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl~ 73 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVLK 73 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEEe
Confidence 345555553 23667778877777633333332222235899999999999999976
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.89 E-value=80 Score=22.87 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHH
Q 020917 50 RTIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKD 105 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~ 105 (320)
.+-|+-..+..++..+++..++.+|++...-++. .....=|||.+..-++|.....
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 3577778889999999999999997765444333 2233679999999988887644
No 241
>PRK15464 cold shock-like protein CspH; Provisional
Probab=38.93 E-value=28 Score=24.21 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=15.4
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|......||||||+=.+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred eEEEEEEECCCCeEEEccCC
Confidence 46777778889999997654
No 242
>PF14893 PNMA: PNMA
Probab=38.84 E-value=23 Score=32.68 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=34.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhhhCCCccccE------EEeeCCcceEEEEeCC
Q 020917 46 HDEVRTIFITGLPDDVKERELQNLLRWLPGYEASQ------VNYKGEKPMGFALFST 96 (320)
Q Consensus 46 ~~~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~i------v~~~~~kg~aFV~F~~ 96 (320)
-+..|.|.|.+||.++++++|.+.+..-....|.. .+..-...-|+|+|..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 35678899999999999999998887643322322 1111123778898854
No 243
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.93 E-value=46 Score=31.07 Aligned_cols=66 Identities=12% Similarity=0.254 Sum_probs=49.5
Q ss_pred CeEEEeCCCCCCCHHHHHHhhccCCC-eeEEEEEec------CCcceEEEEEcCHHHHHHHHHHhCCCeeCCC
Q 020917 224 NTLFIGNLGESINEEELRGLFSAQPG-FKQMKVLRQ------ERHTVCFIEFEDVNSASSVHHNLQGAVIPSS 289 (320)
Q Consensus 224 ~~LfV~NL~~~~tee~L~~~F~~~G~-i~~v~i~~~------~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~ 289 (320)
..+.|.+||+..++++|.+-...|-. +....+... ...+.++|.|...++-..-...++|+.|-.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 56789999999999999988877653 222233210 1156899999999998888888999988764
No 244
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=37.74 E-value=31 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=15.0
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|......||||||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 46667777789999998643
No 245
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=36.70 E-value=9.6 Score=26.31 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhC
Q 020917 238 EELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 238 e~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~ln 282 (320)
++|.+.|..+..+..+.-. .+|..|.+.++|..++.+++
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 6888888876655443222 28999999999999887764
No 246
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.67 E-value=5.2 Score=38.87 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=47.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEE----eeCCcceEEEEeCCHHHHHHHHHHhcCceeC
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVN----YKGEKPMGFALFSTAQLAVAAKDALQEMIFD 113 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~----~~~~kg~aFV~F~~~e~A~~A~~~lng~~~~ 113 (320)
.++|||+|++++++.++|..++..+.++..--+. .+.-..+++|+|.---.-..|+.+||++.+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 5789999999999999999999988333211111 1222378899998777777777778888774
No 247
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.27 E-value=1.5e+02 Score=20.58 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=30.1
Q ss_pred HHHHHHhhhCCCccc-cEEEeeCC--cceEEEEeCCHHHHHHHHHHhc
Q 020917 64 RELQNLLRWLPGYEA-SQVNYKGE--KPMGFALFSTAQLAVAAKDALQ 108 (320)
Q Consensus 64 e~L~~lF~~~~~~~~-~iv~~~~~--kg~aFV~F~~~e~A~~A~~~ln 108 (320)
+++++.+..+ | .-..+.+. -++.|+.+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~----Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEEN----GALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHT----TESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHC----CCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3456666666 5 33556666 6999999999999999888763
No 248
>PRK10943 cold shock-like protein CspC; Provisional
Probab=36.08 E-value=34 Score=23.65 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=15.0
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|......||||||+=.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 46666777788999997644
No 249
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.46 E-value=1.1e+02 Score=21.64 Aligned_cols=55 Identities=7% Similarity=0.047 Sum_probs=41.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe---eCCcceEEEEeCCHHHHHHHHH
Q 020917 51 TIFITGLPDDVKERELQNLLRWLPGYEASQVNY---KGEKPMGFALFSTAQLAVAAKD 105 (320)
Q Consensus 51 ~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~---~~~kg~aFV~F~~~e~A~~A~~ 105 (320)
+-|+-..+.+++..+|+..++.++++...-++. ...--=|||.+..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 578888999999999999999987765444333 2223569999998888877543
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.30 E-value=44 Score=30.49 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=26.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCceeCcCCCCeEEEEEcccccc
Q 020917 90 GFALFSTAQLAVAAKDALQEMIFDAETKSVLHTEMAKKNLF 130 (320)
Q Consensus 90 aFV~F~~~e~A~~A~~~lng~~~~~~~gr~l~v~~a~~~~~ 130 (320)
|||+|++..+|..|.+.+....- +.+++..|-+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~-----~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP-----NSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC-----CCceEeeCCCccc
Confidence 79999999999999996554433 4557777765554
No 251
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.07 E-value=33 Score=26.50 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=26.9
Q ss_pred EEEcCCCCC---------CCHHHHHHHhhhCCCccccEEEee-CCcceEEEEeCCHHHHH-HHHH
Q 020917 52 IFITGLPDD---------VKERELQNLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAV-AAKD 105 (320)
Q Consensus 52 L~V~nLp~~---------~tee~L~~lF~~~~~~~~~iv~~~-~~kg~aFV~F~~~e~A~-~A~~ 105 (320)
++|-|++.. +..++|++.|+.|.......+-.. +.+|++.|.|..--..- .|+.
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 556666433 345789999999844433333332 34599999998765533 3544
No 252
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=34.46 E-value=1.3e+02 Score=19.48 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=31.0
Q ss_pred EEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCCcceE--EEEEcCHHHHHHHHHHhC
Q 020917 226 LFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVC--FIEFEDVNSASSVHHNLQ 282 (320)
Q Consensus 226 LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~~g~a--FV~F~~~~~A~~Al~~ln 282 (320)
|+|..-...-.-.+|.++|+++| .|.++........+++ .+.+.+. .....++.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-~~~~l~~~l~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-VPEEVLEELK 60 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-CCHHHHHHHH
Confidence 34433333334578889999887 6888887654312444 4444443 3334444444
No 253
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=33.54 E-value=41 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=13.6
Q ss_pred ccEEEeeCCcceEEEEeC
Q 020917 78 ASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~ 95 (320)
|.|..+...||||||+=.
T Consensus 4 G~Vkwfn~~KGfGFI~~~ 21 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPE 21 (74)
T ss_pred eEEEEEeCCCCeEEEeeC
Confidence 566666778999999653
No 254
>PRK14998 cold shock-like protein CspD; Provisional
Probab=33.14 E-value=42 Score=23.53 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.4
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020917 78 ASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~~ 96 (320)
|.|......||||||.=.+
T Consensus 4 G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred eEEEEEeCCCceEEEecCC
Confidence 6666677789999997643
No 255
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.89 E-value=95 Score=22.25 Aligned_cols=37 Identities=5% Similarity=0.002 Sum_probs=25.5
Q ss_pred CeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCee
Q 020917 249 GFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVI 286 (320)
Q Consensus 249 ~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l 286 (320)
.|.++... +.-+||-||+=.+..+...|++.+-+-..
T Consensus 33 ~I~Si~~~-~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSIFAP-DSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EEEE--TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEEEEe-CCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 56676443 45699999999999999999988766543
No 256
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.29 E-value=1.5e+02 Score=19.24 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=36.0
Q ss_pred eEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCCcceEEEEEcCHH
Q 020917 225 TLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQERHTVCFIEFEDVN 272 (320)
Q Consensus 225 ~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~ 272 (320)
||.|.||.=.--...+...+.+.-+|.++.+- ...+.+-|.|....
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd--~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVD--LETKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEE--TTTTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEE--CCCCEEEEEEecCC
Confidence 57788887666667889999999999999885 44577999998553
No 257
>PRK15463 cold shock-like protein CspF; Provisional
Probab=30.08 E-value=48 Score=23.00 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=14.8
Q ss_pred cccEEEeeCCcceEEEEeCC
Q 020917 77 EASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~~ 96 (320)
.|.|......||||||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSD 25 (70)
T ss_pred eEEEEEEeCCCceEEEecCC
Confidence 36666677788999997644
No 258
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.25 E-value=94 Score=22.69 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=28.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-e--CCcceEEEEeCC
Q 020917 49 VRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-K--GEKPMGFALFST 96 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~--~~kg~aFV~F~~ 96 (320)
..-||||+++..+-+.--..+-+.+ .-+|..+.+ . +..||.|-.+.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~-~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHC-PPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhC-CCCccEEEEEeCCCCCCcEEEecCC
Confidence 4459999998877654333333332 334655554 2 345998887744
No 259
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.83 E-value=74 Score=28.34 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=21.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhhC
Q 020917 50 RTIFITGLPDDVKERELQNLLRWL 73 (320)
Q Consensus 50 ~~L~V~nLp~~~tee~L~~lF~~~ 73 (320)
....|+||||+++..=|..+++..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~ 119 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEK 119 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhcc
Confidence 468999999999999999999877
No 260
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.68 E-value=2.3e+02 Score=20.49 Aligned_cols=54 Identities=4% Similarity=0.127 Sum_probs=38.4
Q ss_pred EEEeCCCCCCCHHHHHHhhcc-CC-CeeEEEEEecCC-cceEEEEEcCHHHHHHHHH
Q 020917 226 LFIGNLGESINEEELRGLFSA-QP-GFKQMKVLRQER-HTVCFIEFEDVNSASSVHH 279 (320)
Q Consensus 226 LfV~NL~~~~tee~L~~~F~~-~G-~i~~v~i~~~~~-~g~aFV~F~~~~~A~~Al~ 279 (320)
-|+--.+.+.+..++++.+.. || .|.+|+...-.. .--|||.+..-..|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 455566778899999988876 55 467776654322 3469999998888877644
No 261
>PRK11901 hypothetical protein; Reviewed
Probab=27.89 E-value=4.3e+02 Score=24.39 Aligned_cols=59 Identities=10% Similarity=0.000 Sum_probs=35.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhhhCCCccccEEEe-eCCc-ceEEE--EeCCHHHHHHHHHHhcC
Q 020917 48 EVRTIFITGLPDDVKERELQNLLRWLPGYEASQVNY-KGEK-PMGFA--LFSTAQLAVAAKDALQE 109 (320)
Q Consensus 48 ~~~~L~V~nLp~~~tee~L~~lF~~~~~~~~~iv~~-~~~k-g~aFV--~F~~~e~A~~A~~~lng 109 (320)
..-+|-|..+. .++.|+.+...+..-...|... +..+ =|..| .|.+.++|+.|+..|-.
T Consensus 244 ~~YTLQL~Aas---~~~~L~~f~~~~~L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSAS---RSDTLNAYAKKQNLSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecCC---CHHHHHHHHHHcCcCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 34566666654 4888888887773211122222 1222 23322 59999999999998754
No 262
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.70 E-value=1.5e+02 Score=21.76 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHhhccCCC-eeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCC
Q 020917 230 NLGESINEEELRGLFSAQPG-FKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQG 283 (320)
Q Consensus 230 NL~~~~tee~L~~~F~~~G~-i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG 283 (320)
.+-+.++...+..-|...|. -+-..+.+|-=+.+|-|+|.+.+.+..|.+.|--
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 34556777878777766663 2223333222278999999999999999987753
No 263
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=27.67 E-value=54 Score=22.65 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=14.3
Q ss_pred cccEEEeeCCcceEEEEeC
Q 020917 77 EASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~ 95 (320)
.|.|......||||||.=.
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~ 24 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPD 24 (70)
T ss_pred eEEEEEEeCCCCcEEEecC
Confidence 3666677778899999853
No 264
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=27.49 E-value=60 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.143 Sum_probs=14.5
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020917 78 ASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~~ 96 (320)
|.|......||||||.=.+
T Consensus 4 G~Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 4 GIVKWFNNAKGFGFICPEG 22 (68)
T ss_pred eEEEEEeCCCCeEEEecCC
Confidence 5566667788999998765
No 265
>PRK09890 cold shock protein CspG; Provisional
Probab=26.71 E-value=58 Score=22.53 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=14.5
Q ss_pred cccEEEeeCCcceEEEEeC
Q 020917 77 EASQVNYKGEKPMGFALFS 95 (320)
Q Consensus 77 ~~~iv~~~~~kg~aFV~F~ 95 (320)
.|.|..+...||||||+=.
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~ 24 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPD 24 (70)
T ss_pred eEEEEEEECCCCcEEEecC
Confidence 3666667778899999864
No 266
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.61 E-value=71 Score=26.70 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=43.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCCCeeEEEEEecCC-----cceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEE
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQPGFKQMKVLRQER-----HTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQ 297 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G~i~~v~i~~~~~-----~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~ 297 (320)
.+++|.. +-+..-++|.++-+ |.+..|...+... +|-.||.|.+.++|...++ -++..+.. ..|...
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e---~el~r~ 182 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAE---TELKRS 182 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccc---hHHHHH
Confidence 3556666 32333455555554 7888887754332 6899999999999988765 45555555 566655
Q ss_pred e
Q 020917 298 Y 298 (320)
Q Consensus 298 ~ 298 (320)
|
T Consensus 183 ~ 183 (205)
T KOG4213|consen 183 G 183 (205)
T ss_pred H
Confidence 5
No 267
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.81 E-value=80 Score=21.83 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.6
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 262 TVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 262 g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
.+.+|.|.+..+|.+|-+.|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 468999999999999999988766544
No 268
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=25.21 E-value=77 Score=21.51 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred HHHHHhhccCCCeeEEEE
Q 020917 238 EELRGLFSAQPGFKQMKV 255 (320)
Q Consensus 238 e~L~~~F~~~G~i~~v~i 255 (320)
++||+.|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999876665
No 269
>PHA01632 hypothetical protein
Probab=24.83 E-value=81 Score=20.80 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhC
Q 020917 52 IFITGLPDDVKERELQNLLRWL 73 (320)
Q Consensus 52 L~V~nLp~~~tee~L~~lF~~~ 73 (320)
|.|-.+|..-||++||.++.+.
T Consensus 19 ilieqvp~kpteeelrkvlpki 40 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPKI 40 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHHH
Confidence 3567899999999999988766
No 270
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=24.65 E-value=93 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=14.4
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020917 78 ASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~~ 96 (320)
|.|..+...+|||||.-.+
T Consensus 3 G~V~~~~~~kgyGFI~~~~ 21 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDD 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCceEEEEcc
Confidence 5566667778999999865
No 271
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.15 E-value=3.1e+02 Score=25.35 Aligned_cols=77 Identities=14% Similarity=0.022 Sum_probs=42.2
Q ss_pred cceEEEcCCCCCCCHHHHH-----------HHhhhCCCccccEEEee-CCcceEEEEeCCHHHHHHHHHHhcCceeCcCC
Q 020917 49 VRTIFITGLPDDVKERELQ-----------NLLRWLPGYEASQVNYK-GEKPMGFALFSTAQLAVAAKDALQEMIFDAET 116 (320)
Q Consensus 49 ~~~L~V~nLp~~~tee~L~-----------~lF~~~~~~~~~iv~~~-~~kg~aFV~F~~~e~A~~A~~~lng~~~~~~~ 116 (320)
.|+-.+-++++--|..||| -|.++|+-.+..|+.+. ... --+.--+..--++||.-|- -...-
T Consensus 63 krrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~--s~~~~PT~~Nir~Al~wLV---~~aq~ 137 (362)
T KOG1546|consen 63 KRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE--SPVRIPTGKNIRRALRWLV---ESAQP 137 (362)
T ss_pred cceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC--cccccCcHHHHHHHHHHHH---hcCCC
Confidence 3445566799999999998 34556644455555542 111 0122233444455655442 12222
Q ss_pred CCeEEEEEcccccc
Q 020917 117 KSVLHTEMAKKNLF 130 (320)
Q Consensus 117 gr~l~v~~a~~~~~ 130 (320)
|-.|.+.|+-+-..
T Consensus 138 gD~LvfHYSGHGtr 151 (362)
T KOG1546|consen 138 GDSLVFHYSGHGTR 151 (362)
T ss_pred CCEEEEEecCCCCc
Confidence 56889999866544
No 272
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=23.45 E-value=2.3e+02 Score=19.41 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=29.3
Q ss_pred HHHHHHhhccCC-CeeEEEEEecCC---cceEEEEEc-CHHHHHHHHHHhCC
Q 020917 237 EEELRGLFSAQP-GFKQMKVLRQER---HTVCFIEFE-DVNSASSVHHNLQG 283 (320)
Q Consensus 237 ee~L~~~F~~~G-~i~~v~i~~~~~---~g~aFV~F~-~~~~A~~Al~~lnG 283 (320)
--++.+.|..+| .+.+|.-..... .-.-||+|+ ..+.-.+|++.|..
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 467888999988 466664432222 346678887 44445567777754
No 273
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=22.90 E-value=89 Score=20.83 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=14.1
Q ss_pred ccEEEeeCCcceEEEEeCC
Q 020917 78 ASQVNYKGEKPMGFALFST 96 (320)
Q Consensus 78 ~~iv~~~~~kg~aFV~F~~ 96 (320)
|.|......||||||.=.+
T Consensus 3 G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 3 GTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 4555666678999998765
No 274
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.43 E-value=97 Score=30.39 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=36.5
Q ss_pred CcceEEEEEcCHHHHHHHHHHhCCCeeCCCCCceeEEEeecCCCC
Q 020917 260 RHTVCFIEFEDVNSASSVHHNLQGAVIPSSGSVGMRIQYSKNPFG 304 (320)
Q Consensus 260 ~~g~aFV~F~~~~~A~~Al~~lnG~~l~g~~~~~l~v~~ak~~~~ 304 (320)
...++++.|.+...+.+|+..++|....+ ..+++..++...+
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~---~~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKG---FILRVQLGATEVG 103 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhc---chhhhhhcccccc
Confidence 35799999999999999999999999998 7888888766644
No 275
>PF14893 PNMA: PNMA
Probab=22.07 E-value=60 Score=30.02 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHhhc----cCCCe--eEEEEEecCCcceEEEEEcC
Q 020917 222 PCNTLFIGNLGESINEEELRGLFS----AQPGF--KQMKVLRQERHTVCFIEFED 270 (320)
Q Consensus 222 ~~~~LfV~NL~~~~tee~L~~~F~----~~G~i--~~v~i~~~~~~g~aFV~F~~ 270 (320)
+.+.|.|.+||.+++++||.+.++ ..|.. ..-.+.+..+---++|+|..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 357799999999999999887665 34432 22222222233457777764
No 276
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=21.50 E-value=4e+02 Score=20.82 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=40.8
Q ss_pred CCeEEEeCCCC-CCCHHHH-------H-----HhhccCCCeeEEEEEecCCcceEEEEEcCHHHHHHHHHHhCCCeeCC
Q 020917 223 CNTLFIGNLGE-SINEEEL-------R-----GLFSAQPGFKQMKVLRQERHTVCFIEFEDVNSASSVHHNLQGAVIPS 288 (320)
Q Consensus 223 ~~~LfV~NL~~-~~tee~L-------~-----~~F~~~G~i~~v~i~~~~~~g~aFV~F~~~~~A~~Al~~lnG~~l~g 288 (320)
+-+|||+=..+ .-++.++ . ++|..+=.+..+.|. .+ -|+.-|.+-+.|-.|.+-|-|..+..
T Consensus 66 tlmlfv~v~~psqp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~--dd--raifm~kdge~a~e~k~fll~qd~~a 140 (164)
T KOG4357|consen 66 TLMLFVGVSDPSQPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIID--DD--RAIFMFKDGEQAFEAKDFLLGQDFCA 140 (164)
T ss_pred eEEEEEEecCCCCCChhhccchhHHHHHHHHHHhhccccceEEEEec--CC--eEEEEEeChhHHHHHHHHhhccchhe
Confidence 56788885543 2334333 3 355555455555443 22 38999999999999999998888764
No 277
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=20.63 E-value=1.2e+02 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=35.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHhhccCC-CeeEEEEEecCCcceEEEEEc
Q 020917 223 CNTLFIGNLGESINEEELRGLFSAQP-GFKQMKVLRQERHTVCFIEFE 269 (320)
Q Consensus 223 ~~~LfV~NL~~~~tee~L~~~F~~~G-~i~~v~i~~~~~~g~aFV~F~ 269 (320)
.++.||++|.++.--++|.+..+++| .+..++...+...++++|.-.
T Consensus 61 ~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~ 108 (330)
T KOG2855|consen 61 GRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVS 108 (330)
T ss_pred cceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEc
Confidence 67899999999988899999999987 356666655544566666543
Done!